RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4687
(339 letters)
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 40.3 bits (94), Expect = 3e-05
Identities = 11/78 (14%), Positives = 33/78 (42%)
Query: 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVD 88
+ L ++ ++++ NL+ T+ ++ L + ++ + + + +V + D
Sbjct: 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 61
Query: 89 IKEICWNLNNIRLRDCEL 106
+ +N RL D +
Sbjct: 62 AENAMRYINGTRLDDRII 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.4 bits (89), Expect = 1e-04
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVD 88
RA+ +TS + + L T+ +++ + L V + G+V F
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62
Query: 89 IKEICWNLNNIRLRDCE 105
++ + I R C+
Sbjct: 63 QVKVMSQRHMIDGRWCD 79
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 37.6 bits (87), Expect = 1e-04
Identities = 12/71 (16%), Positives = 29/71 (40%)
Query: 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
S+++ +L P +T+A + L + + RR +V F++ D +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 96 LNNIRLRDCEL 106
+N ++ +
Sbjct: 62 MNFDVIKGKPV 72
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 37.7 bits (87), Expect = 2e-04
Identities = 9/70 (12%), Positives = 22/70 (31%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+F+ L + +V+ L + + + + + L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 97 NNIRLRDCEL 106
N ++L D +L
Sbjct: 64 NGMQLGDKKL 73
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 37.4 bits (86), Expect = 2e-04
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 22 SKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWV 81
++ P P + + L+ T+ ++ + +Y V+I Q RR +V
Sbjct: 2 NRANPDP-----NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 56
Query: 82 TFRRDVDIKEICWNLNNIRLRDCEL 106
F D KE N + L +
Sbjct: 57 YFENVDDAKEAKERANGMELDGRRI 81
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 37.2 bits (86), Expect = 2e-04
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+ + NL ++ A+++ L + + A+ R V F R D +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVH-YDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 97 NNIRLRDCEL 106
N + L +
Sbjct: 62 NGVPLDGRPM 71
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 36.6 bits (84), Expect = 4e-04
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEI 92
R +++++ L T+T+ E+E L +Y + I Q G++ F + ++ +E
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 93 CWNLNNIRLRDCELGAIVN 111
LN + V
Sbjct: 65 IKGLNGQKPSGATEPITVK 83
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 36.6 bits (84), Expect = 5e-04
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
+ +F+RNL+ T ++ ++E L Y + ++ +VTF +
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 94 WNLNNIRLRDCELGAIVNRDLSRRVRTVSG 123
++ + L V ++ + SG
Sbjct: 68 AEVDGQVFQGRML--HVLPSTIKKEASQSG 95
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 36.1 bits (83), Expect = 6e-04
Identities = 13/72 (18%), Positives = 27/72 (37%)
Query: 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
+++ + L +T E+ L + I + +V F ++D +
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 95 NLNNIRLRDCEL 106
LN I +R+ L
Sbjct: 63 VLNGITVRNKRL 74
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 36.1 bits (83), Expect = 6e-04
Identities = 13/73 (17%), Positives = 33/73 (45%)
Query: 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEI 92
+ +++++ NL TIT +++ + +Y ++ I + R +V + + + +E
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 93 CWNLNNIRLRDCE 105
LNN+
Sbjct: 65 ISALNNVIPEGGS 77
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 35.9 bits (82), Expect = 6e-04
Identities = 11/72 (15%), Positives = 28/72 (38%)
Query: 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
+++ + L +T+ E +L + + + G+V + D ++
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 95 NLNNIRLRDCEL 106
LN +RL+ +
Sbjct: 63 TLNGLRLQTKTI 74
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 36.5 bits (84), Expect = 6e-04
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKE 91
TS I +RN+ + E+ L + V + G+V F D K+
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 92 ICWNLNN 98
L +
Sbjct: 67 AFNALCH 73
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 36.2 bits (83), Expect = 7e-04
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
+++ LA + + + + I + +V F D N
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 96 LNNIRLRDCELGAIVNRDLSRRVR 119
+N L + VN R++
Sbjct: 67 MNESELFGRTI--RVNLAKPMRIK 88
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.4 bits (81), Expect = 0.001
Identities = 12/80 (15%), Positives = 31/80 (38%)
Query: 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
P R ++I + NL+ + +++ L + + R+ +A + + +++F R
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 87 VDIKEICWNLNNIRLRDCEL 106
D ++ L
Sbjct: 61 EDAARAIAGVSGFGYDHLIL 80
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 34.6 bits (79), Expect = 0.002
Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLR---VAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
+F++NL + T+ ++ + + + G+V +++ ++
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 94 WNLNNIRLRDCEL 106
L + +L
Sbjct: 61 KQLQGHTVDGHKL 73
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 34.4 bits (78), Expect = 0.002
Identities = 9/70 (12%), Positives = 24/70 (34%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+++ N P+ T+ + +L + + R ++ D + L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 97 NNIRLRDCEL 106
N +++ L
Sbjct: 64 NGLKIEGYTL 73
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.2 bits (78), Expect = 0.003
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
S +F+ NL P IT+ E+ L ++Y V + G++ +
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKV 62
Query: 95 NLNNIRLRDCEL 106
L+N+ LR +L
Sbjct: 63 ELDNMPLRGKQL 74
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 34.5 bits (79), Expect = 0.003
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 22 SKNEPPPRALHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGW 80
S + PR+++ +F+ NL + K++VE + +Y + +
Sbjct: 5 SSGKTDPRSMNSR--VFIGNLNTLVVKKSDVEAIFSKYGKIVGC--------SVHKGFAF 54
Query: 81 VTFRRDVDIKEICWNLNNIRLRDCEL 106
V + + + + + + L
Sbjct: 55 VQYVNERNARAAVAGEDGRMIAGQVL 80
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.3 bits (78), Expect = 0.003
Identities = 11/95 (11%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 12 SYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQP 71
+ +I G K P +++F+ +L ++ + + + + +
Sbjct: 2 TQQSIGAAGSQKEGPE------GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ 55
Query: 72 DRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106
G+V++ V + ++N ++ L
Sbjct: 56 TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 90
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 34.6 bits (79), Expect = 0.003
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
PP +++RNL IT E+ ++ +Y G +R P+ R +V +
Sbjct: 3 PPEV---NRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNTPETRGT--AYVVYEDI 56
Query: 87 VDIKEICWNLNNIRLRDCEL 106
D K C +L+ + + L
Sbjct: 57 FDAKNACDHLSGFNVCNRYL 76
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 33.7 bits (76), Expect = 0.004
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
+++ ++NL + + +V K + V +AD F R
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60
Query: 95 N 95
+
Sbjct: 61 H 61
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.8 bits (77), Expect = 0.004
Identities = 9/80 (11%), Positives = 31/80 (38%)
Query: 27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
P ++ +++++ L +++ + L + + + + + G+V F +
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
Query: 87 VDIKEICWNLNNIRLRDCEL 106
D ++ I+L +
Sbjct: 62 EDADYAIKIMDMIKLYGKPI 81
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 33.4 bits (76), Expect = 0.006
Identities = 7/86 (8%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 21 ESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGW 80
+ N+ P+ +++ +A +T + + + + + +
Sbjct: 9 DVVNQSSPK----NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSF 58
Query: 81 VTFRRDVDIKEICWNLNNIRLRDCEL 106
V F ++N + +
Sbjct: 59 VRFSTHESAAHAIVSVNGTTIEGHVV 84
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 33.5 bits (76), Expect = 0.006
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
++F LA I ++E+ V I + RR +V F +
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL-AIG 78
Query: 96 LNNIRLRDCELGAIVNRDLSRRVR 119
L RL + IV + + R
Sbjct: 79 LTGQRLLGVPI--IVQASQAEKNR 100
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 33.2 bits (75), Expect = 0.007
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 19 GGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRR 78
G S P R+ R + + L P+ + ++++ + D +
Sbjct: 3 SGSSGGPPTRRSDFR---VLVSGLPPSGSWQDLKDHMREAGDV-------CYADVQKDGM 52
Query: 79 GWVTFRRDVDIKEICWNLNNIRLRDCEL 106
G V + R D++ L++ + R E
Sbjct: 53 GMVEYLRKEDMEYALRKLDDTKFRSHEG 80
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 32.6 bits (74), Expect = 0.008
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+F+ L+ T+ + ++ + +R G+VTF + ++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 97 NNIRL 101
+ L
Sbjct: 62 SRHEL 66
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 32.9 bits (74), Expect = 0.012
Identities = 6/68 (8%), Positives = 21/68 (30%)
Query: 36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
++F+RNL+ + + + +++ V + + F ++
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 96 LNNIRLRD 103
+
Sbjct: 70 ASLEAEGG 77
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 32.3 bits (73), Expect = 0.013
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
+IF++NL +I + + + L + + G+V F +
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAI 65
Query: 94 WNLNNIRLRDCELGAIVNRDLSRRVR 119
+N + L D ++ V R SR+ R
Sbjct: 66 EKMNGMLLNDRKV--FVGRFKSRKER 89
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 32.3 bits (73), Expect = 0.016
Identities = 9/84 (10%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 23 KNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVT 82
++ + + ++ +NL+ IT+ E++ + + V+ D + ++
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIE 59
Query: 83 FRRDVDIKEICWNLNNIRLRDCEL 106
F+ + D ++ + +
Sbjct: 60 FKSEADAEKNLEEKQGAEIDGRSV 83
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 31.7 bits (71), Expect = 0.018
Identities = 11/66 (16%), Positives = 25/66 (37%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+++R L P T ++ LC+ Y + + + G+V F ++ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 97 NNIRLR 102
++
Sbjct: 61 KASGVQ 66
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 31.9 bits (72), Expect = 0.020
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 24 NEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTF 83
++ PR ++++ NL+ +T+ + L + + + +V F
Sbjct: 4 DDGQPR------TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC--FVEF 55
Query: 84 RRDVDIKEICWNLNNIRLRDCEL 106
D +N ++ E+
Sbjct: 56 YEHRDAAAALAAMNGRKILGKEV 78
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 31.6 bits (71), Expect = 0.021
Identities = 11/70 (15%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
IF+ L+ T +V++ +++ + + R G+VTF + ++++C +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60
Query: 97 NNIRLRDCEL 106
+ + + +
Sbjct: 61 HFHEINNKMV 70
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 32.0 bits (72), Expect = 0.023
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 18 NGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR 77
+ G S+++ P+ + + N+ ++ + ++ L V I + + F
Sbjct: 1 SSGNSESKSTPK------RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFG 54
Query: 78 RGWVTFRRDVDIKEICWNLNNIRLRDCEL 106
+VTF D L+ + ++
Sbjct: 55 --FVTFENSADADRAREKLHGTVVEGRKI 81
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.6 bits (71), Expect = 0.024
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
IF+ + + + + ++Y + I + + +VTF D D +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQ 63
Query: 97 NNIRLRDCEL 106
+
Sbjct: 64 KYHTVNGHNC 73
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.9 bits (69), Expect = 0.041
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+F+ L+ + +E + +Y V + + +R G+VTF D K+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 97 NNIRLRDCEL 106
N + ++
Sbjct: 68 NGKSVDGRQI 77
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 30.8 bits (69), Expect = 0.045
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 20 GESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRG 79
G S +P P + I ++N+ T++ E+ + Y + + + G
Sbjct: 1 GASSGKPGP------TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC--LKYNEKGMPTG 52
Query: 80 --WVTFRRDVDIKEICWNLNNIRLRDCEL 106
V F + +LN+ + ++
Sbjct: 53 EAMVAFESRDEATAAVIDLNDRPIGSRKV 81
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 30.8 bits (69), Expect = 0.056
Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRG--WVTFRRDVDIKEICW 94
+F+ + + E+ + + + I + RG +V +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 95 NLNN 98
L
Sbjct: 64 KLMP 67
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.5 bits (68), Expect = 0.072
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
+S I ++NL EV +L K Y R R +VT +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYC------YVDRNKRTAFVTLLNGEQAQNAI 57
Query: 94 WNLNNIRLRDCEL 106
+ R +L
Sbjct: 58 QMFHQYSFRGKDL 70
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 30.1 bits (67), Expect = 0.087
Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 23 KNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVT 82
KN+ R S++++ T +++ + L + + + +V
Sbjct: 1 KNDVKNR------SVYIKGFPTDATLDDIKEWLEDKGQVLNI-QMRRTLHKAFKGSIFVV 53
Query: 83 FRRDVDIKEICWNLNNIRLRDCEL 106
F ++ + + ++ +L
Sbjct: 54 F-DSIESAKKFVETPGQKYKETDL 76
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 29.6 bits (66), Expect = 0.094
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+F+ L+ TK ++++ ++ + + R G+V F+ + ++ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQ 60
Query: 97 NNIRL 101
+L
Sbjct: 61 KEHKL 65
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.2 bits (65), Expect = 0.16
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
+S +F+ +T+ E+ +Y + V + + +VTF D + +C
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLC 59
Query: 94 WNLNNIRLRDCELGAIVNRDLSRR 117
I+ + + S
Sbjct: 60 GEDLIIKGISVHISNAEPKHNSNS 83
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 28.9 bits (64), Expect = 0.20
Identities = 6/72 (8%), Positives = 19/72 (26%)
Query: 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
+F+ ++ + E++ Y + + + V +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 95 NLNNIRLRDCEL 106
LN + +
Sbjct: 68 ALNGAEIMGQTI 79
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 28.4 bits (63), Expect = 0.29
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
IF+ L+P + ++ + + + + ++TF+ + +K+I
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 97 N-NIRLRDCE 105
N+ L CE
Sbjct: 62 YHNVGLSKCE 71
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 28.5 bits (63), Expect = 0.29
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+F+ L+ T + + +++ + +R G+VT+ V+ + N
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEEVDAAMNA 67
Query: 97 NNIRLRDCELGAIVNRDLS 115
++ + R +S
Sbjct: 68 RPHKVDGRVV--EPKRAVS 84
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.9 bits (64), Expect = 0.31
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
IF+ L T A + + + + + + G+VT + C +
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 97 N 97
N
Sbjct: 73 N 73
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 28.2 bits (62), Expect = 0.43
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVA-IADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
IF+ NL P I + + + + L+ I ++ F
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 96 LNNIRLRDCEL 106
+N L + +
Sbjct: 61 MNGQYLCNRPI 71
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.6 bits (63), Expect = 0.43
Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 25 EPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFR 84
+P R+ +F+ N+ T+ +++++ + + + + G+ ++
Sbjct: 1 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 58
Query: 85 RDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVR 119
NLN L V+ S + +
Sbjct: 59 DQETALSAMRNLNGREFSGRAL--RVDNAASEKNK 91
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.2 bits (64), Expect = 0.53
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
+F+ L+ T + + +++ G L + P+ + R V+ + N
Sbjct: 9 LFIGGLSFETTDESLRSHFEQW-GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 97 NNIRLRDC 104
++
Sbjct: 68 RPHKVDGR 75
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.61
Identities = 8/55 (14%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 23 KNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR 77
+N PP ++++ L N+ P++++ +++ L G ++ + +
Sbjct: 4 QNIFPP-----SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALI 53
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 27.8 bits (61), Expect = 0.67
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR---------RGWVTFR 84
S+I+++ L ++T ++ + K+ G +++ QP + V++
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 66
Query: 85 RDVDIKEICWNLNNIRLRDCEL 106
K + + +L
Sbjct: 67 DPPTAKAAVEWFDGKDFQGSKL 88
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 26.8 bits (58), Expect = 1.2
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
I +R L +T EV +L Y ++ +VT +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELK-------YCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 97 NNIRLRDCEL 106
+ RLR+ EL
Sbjct: 54 HQSRLREREL 63
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 25.2 bits (55), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 308 CPLSGKKFKGPDFIRKHIFNK-HAEKVEE 335
C L G K+ IR HIF+K H KV E
Sbjct: 9 CTLCGVKYSARLSIRDHIFSKQHISKVRE 37
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.9 bits (56), Expect = 3.0
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 6/84 (7%)
Query: 20 GESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRG 79
G S + H + +R L T+ ++ N + P R
Sbjct: 4 GSSGSSFQSTTGH---CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEA 58
Query: 80 WVTFRRDVDIKEICWNLNNIRLRD 103
V F D + ++
Sbjct: 59 DVEFATHEDAVAAM-AKDKANMQH 81
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Length = 103
Score = 25.9 bits (56), Expect = 3.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 248 TPQEITDYCSTFQNKM 263
TPQ ITD C+ + N
Sbjct: 1 TPQNITDLCAEYHNTQ 16
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.8 bits (56), Expect = 3.3
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR-RGWVTFRRDVDIKEICWN 95
+F+ L+ T+ + N +++ G L + P + R G+VTF ++
Sbjct: 23 LFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 80
Query: 96 LNNIRLRDCEL 106
+ +
Sbjct: 81 ARPHSIDGRVV 91
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.2 bits (57), Expect = 6.3
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 24 NEPPPRALHRTSSIFLRNLAPTITKAEVENLCKR 57
+ +L + L L T +V LC +
Sbjct: 2 TDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQ 35
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 24.6 bits (53), Expect = 6.6
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR-RGWVTFRRDVDIKEI 92
+I++ NL I K E++ + R + +V F+
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 93 CWNLNNIRLRDCEL 106
++ D +
Sbjct: 63 LRSMQGFPFYDKPM 76
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 24.9 bits (53), Expect = 9.3
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
+ I +NL AE++ R+ RV V F ++ ++
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRV------LLPEGGITAIVEFLEPLEARKAF 63
Query: 94 WNLNNIRLRDCEL 106
+L + L
Sbjct: 64 RHLAYSKFHHVPL 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,281,506
Number of extensions: 60366
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 67
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)