BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4688
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 36/201 (17%)
Query: 39 NKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLK 98
K CP C KS+ + ++ +H R H C C K+F +K +H QR H G K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEK 76
Query: 99 ISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQE 158
++C C FS ++ L H +HTG K Y C C K++S L+ H H E
Sbjct: 77 P-----YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 159 KVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKY 218
K K CP+C + + N+ H +R HT + Y
Sbjct: 132 KPYK----------------------------CPECGKSFSREDNLHTH-QRTHTGEKPY 162
Query: 219 GCDECGKMLKSRDSLNTHKKI 239
C ECGK RD+LN H++
Sbjct: 163 KCPECGKSFSRRDALNVHQRT 183
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
K + C C FS L++H +HTG K YKC C K++S +K L H H EK K
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE 222
CP+C + + N+R H +R HT + Y C E
Sbjct: 80 ----------------------------CPECGKSFSQRANLRAH-QRTHTGEKPYACPE 110
Query: 223 CGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHIC 282
CGK L H++ H G C CG + + L H HTG + C
Sbjct: 111 CGKSFSQLAHLRAHQRT-HTG-----EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 283 KICNKGYACAASLKIHNIKTH 303
C K ++ +L +H +TH
Sbjct: 165 PECGKSFSRRDALNVHQ-RTH 184
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHT 275
+ Y C ECGK D L H++ H G C CG + +K L+ H HT
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRT-HTGEKPYK-----CPECGKSFSDKKDLTRHQRTHT 73
Query: 276 GIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNW 335
G + C C K ++ A+L+ H Q T + + C C K F + L H+
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAH------QRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Query: 336 AHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKL 377
G+K + C CG + +L H THTGE+ Y C CGK
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 30 ADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKH 89
A+ R K CP C KS+ +++ +H R H C C K+F +A + H
Sbjct: 38 AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAH 96
Query: 90 MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALK 149
QR H G K + C C FS + L H +HTG K YKC C K++S L
Sbjct: 97 -QRTHTGEKP-----YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150
Query: 150 THTLLHEQEKVIK 162
TH H EK K
Sbjct: 151 THQRTHTGEKPYK 163
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 33 WRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQR 92
R K CP C KS+ N+R H R H C C K+F A + H QR
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAH-QR 126
Query: 93 AHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHT 152
H G K ++C C FS + L H +HTG K YKC C K++S R AL H
Sbjct: 127 THTGEKP-----YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 153 LLHEQEKV 160
H +K
Sbjct: 182 RTHTGKKT 189
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 129 GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
G K Y C C K++S L H H EK K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK-------------------------- 51
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXX 248
CP+C + + + +++ +H +R HT + Y C ECGK R +L H++ H G
Sbjct: 52 --CPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYA 107
Query: 249 XXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTG 308
C CG + L H HTG + C C K ++ + N+ TH Q T
Sbjct: 108 -----CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS-----REDNLHTH-QRTH 156
Query: 309 VPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDK 340
+ +KC C K F + LN H+ G K
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 338 GDKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKLRGK 380
G+K + C CG S L +H THTGE+ Y C CGK K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C C K+F + QKH QR H G K ++C C FS S L H +HTG K
Sbjct: 7 CPECGKSFSQSSNLQKH-QRTHTGEKP-----YKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEK 159
YKC C K++S L H H+ +K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCH 371
+KC C K F + L KH+ G+K + C CG S L++H THTGE+ Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 372 ICGKKL 377
CGK
Sbjct: 65 ECGKSF 70
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSK 103
CP C KS+ + N++KH R H C C K+F + QKH QR H G K
Sbjct: 7 CPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKP---- 60
Query: 104 HFECNYCHAKFSNKSLLSDHISSHTGLK 131
++C C FS LS H +H K
Sbjct: 61 -YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 29/109 (26%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV 190
K YKC C K++S L+ H H EK K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK---------------------------- 34
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
CP+C + + +++KH +R HT + Y C ECGK D L+ H++
Sbjct: 35 CPECGKSFSQSSDLQKH-QRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXX 250
CP+C + + N++KH +R HT + Y C ECGK L H++ H G
Sbjct: 7 CPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTG-----EK 59
Query: 251 XXXCDYCGAKYPNKYTLSDHISGH 274
C CG ++ SDH+S H
Sbjct: 60 PYKCPECG----KSFSRSDHLSRH 79
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKV 160
+ K ++C C FS S L H +HTG K YKC C K++S L+ H H EK
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 161 IK 162
K
Sbjct: 61 YK 62
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF 341
C C K ++ +++L+ H +TH TG + +KC C K F + L KH+ G+K
Sbjct: 7 CPECGKSFSQSSNLQKHQ-RTH---TGE--KPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 342 HLCKVCGAKIKGS--LKQHMITH 362
+ C CG S L +H TH
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK 313
C CG + L H HTG + C C K ++ ++ L+ H Q T +
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH------QRTHTGEKP 60
Query: 314 FKCDLCDKEFFEKKKLNKHK 333
+KC C K F L++H+
Sbjct: 61 YKCPECGKSFSRSDHLSRHQ 80
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHT 275
+ Y C ECGK +L H++ H G C CG + L H HT
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTG-----EKPYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 276 GIPNHICKICNKGYACAASLKIHNIKTH 303
G + C C K ++ + L H +TH
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQ-RTH 83
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +C K+F+ +T H+ L S ++ + C YC +F KS + H HTG K
Sbjct: 4 CKICGKSFKRSSTLSTHL------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 133 YKCHVCDKAYSCRKALKTHTLLH 155
+KC VC KA+S L TH+ H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKH 80
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
+ C CGK K +L+TH I + C YCG ++ K + H HTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD------TRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 278 PNHICKICNKGYACAASLKIHNIK 301
H C++C K ++ +++L H+ K
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRK 79
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH 371
F C +C K F L+ H + + C+ CG + K +K+H HTGE+ + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 372 ICGKKL 377
+CGK
Sbjct: 62 VCGKAF 67
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
F+C C F S LS H+ H+ + Y C C K + + +K HT +H EK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF 341
CKIC K + +++L H + + C C K F +K + KH G+K
Sbjct: 4 CKICGKSFKRSSTLSTHLL------IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 342 HLCKVCGAKIKGS--LKQHMITHTG 364
H C+VCG S L H HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSK 103
C IC KS+ + + HL L+H C C K F K+ +KH H G K
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTG-----EK 56
Query: 104 HFECNYCHAKFSNKSLLSDHISSHTG 129
+C C FS S L H HTG
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXX 250
C C + ++ + HL +H+ R Y C CGK + + H I H G
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTG-----EK 56
Query: 251 XXXCDYCGAKYPNKYTLSDHISGHTG 276
C CG + L H HTG
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 344 CKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKLRGK--LKEHML 386
CK+CG K S L H++ H+ R Y C CGK+ K +K+H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF 50
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 30/112 (26%)
Query: 132 NYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVC 191
++ C +C K++ L TH L+H DT R C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHS--------------DT--------------RPYPC 32
Query: 192 PKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG 243
C + + +M+KH +HT + + C CGK +L TH + +H G
Sbjct: 33 QYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSR-KHTG 82
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
K ++C+ C A F K L+ H + HTG K Y+C++C ++ LKTHT +H EK
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGER 366
+ +KCD C F K L HK G+K + C +CGA+ +LK H H+GE+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 339 DKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGKKL 377
DK + C C A + KG+L H HTGE+ Y C+ICG +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
CD C A + K L+ H + HTG + C IC + A+LK H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG 243
C +C +R N+ H + VHT + Y C+ CG +L TH +I H G
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSG 70
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHT 275
+ Y CD C + + +L +HK + H G C+ CGA++ L H H+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTV-HTG-----EKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 276 G 276
G
Sbjct: 70 G 70
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F A +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 12 CDRRFSRSADLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ K HT +H ++K
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
P+E CD+ F L +H G K C++C S L H+ THTGE+
Sbjct: 8 PVES-----CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + ++ +H+R +HT + + C C + D L TH + H G
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 60 ----EKPFACDICG----RKFARSDERKRHTKI 84
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 43 TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
CP+ C++ + + ++ +H+R +H C +C + F H+ R H G
Sbjct: 6 ACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + L H +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC 344
C++ ++ +A L H I+ H TG + F+C +C + F L H G+K C
Sbjct: 12 CDRRFSRSADLTRH-IRIH---TGQ--KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 345 KVCGAKIKGS 354
+CG K S
Sbjct: 66 DICGRKFARS 75
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F A +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 12 CDRRFSRSAELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ K HT +H ++K
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
P+E CD+ F +L +H G K C++C S L H+ THTGE+
Sbjct: 8 PVES-----CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + + +H+R +HT + + C C + D L TH + H G
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 60 ----EKPFACDICG----RKFARSDERKRHTKI 84
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 43 TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
CP+ C++ + + + +H+R +H C +C + F H+ R H G
Sbjct: 6 ACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + L H +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC 344
C++ ++ +A L H I+ H TG + F+C +C + F L H G+K C
Sbjct: 12 CDRRFSRSAELTRH-IRIH---TGQ--KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 345 KVCGAKIKGS 354
+CG K S
Sbjct: 66 DICGRKFARS 75
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F + +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 12 CDRRFSQSGSLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ K HT +H ++K
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
P+E CD+ F + L +H G K C++C S L H+ THTGE+
Sbjct: 8 PVES-----CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + ++ +H+R +HT + + C C + D L TH + H G
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 60 ----EKPFACDICG----RKFARSDERKRHTKI 84
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + SL H +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 43 TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
CP+ C++ + + ++ +H+R +H C +C + F H+ R H G
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC 344
C++ ++ + SL H I+ H TG + F+C +C + F L H G+K C
Sbjct: 12 CDRRFSQSGSLTRH-IRIH---TGQ--KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 345 KVCGAKIKGS 354
+CG K S
Sbjct: 66 DICGRKFARS 75
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 131 KNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
+ Y C V CD+ +S +L H +H +K +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ-------------------------- 36
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
C C R++ ++ H+R HT + + CD CG+ D H KI
Sbjct: 37 --CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F + + +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 12 CDRRFSDSSNLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ K HT +H ++K
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
P+E CD+ F + L +H G K C++C S L H+ THTGE+
Sbjct: 8 PVES-----CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + + N+ +H+R +HT + + C C + D L TH + H G
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 60 ----EKPFACDICG----RKFARSDERKRHTKI 84
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 43 TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
CP+ C++ + + N+ +H+R +H C +C + F H+ R H G
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + +L H +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLC 344
C++ ++ +++L H I+ H TG + F+C +C + F L H G+K C
Sbjct: 12 CDRRFSDSSNLTRH-IRIH---TGQ--KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 345 KVCGAKIKGS 354
+CG K S
Sbjct: 66 DICGRKFARS 75
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERK 367
P+E CD+ F +K L+ H G K C++C + SL H+ THTGE+
Sbjct: 8 PVES-----CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F K H+ R H G K F+C C FS ++ L+ HI +HTG K + C
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTG-----QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ HT +H ++K
Sbjct: 66 DICGRKFATLHTRTRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 255 DYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
+ C ++ K L HI HTG C+IC + ++ ASL H I+TH TG + F
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTH---TGE--KPF 63
Query: 315 KCDLCDKEF 323
CD+C ++F
Sbjct: 64 ACDICGRKF 72
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + N+ H+R +HT + + C C + + SLN H + H G
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGH 274
CD CG K+ +T + H H
Sbjct: 60 ----EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 44 CPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISV 101
CP+ C++ + N+ H+R +H C +C + F +A+ H+ R H G
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHI-RTHTG----- 59
Query: 102 SKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ + H H K+
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + + +L+TH +I H G C C + + +L+ HI
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQ-----CRICMRNFSQQASLNAHIRT 56
Query: 274 HTGIPNHICKICNKGYA 290
HTG C IC + +A
Sbjct: 57 HTGEKPFACDICGRKFA 73
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 299 NIKTHLQF-TGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI 351
N+ TH++ TG + F+C +C + F ++ LN H G+K C +CG K
Sbjct: 21 NLDTHIRIHTGQ--KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 184 IKRRVTVCP--KCNRDYRNPRNMRKHLRRVHT-SVRKYGCDECGKMLKSRDSLNTHKKIQ 240
++ R CP C + +R+ MRKHL HT R + C ECGK L H+ +
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLV- 56
Query: 241 HEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIH 298
H G + CG ++ + L H+ HTG ++C CNK +A + +LK H
Sbjct: 57 HTGEKPFQCTF---EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Query: 299 NIKTH 303
I TH
Sbjct: 114 -ILTH 117
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 37 IKNKTKTCP--ICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAH 94
++ +T CP C K + MRKHL + C C K F + ++H Q H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPR--VHVCAECGKAFVESSKLKRH-QLVH 57
Query: 95 VGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKT 150
G K F+C + C +FS L H+ HTG + Y C C+K ++ LK+
Sbjct: 58 TG-----EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 151 HTLLHEQEK 159
H L H + K
Sbjct: 113 HILTHAKAK 121
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 319 CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCHI--CG 374
C K F + + KH + HG + H+C CG S LK+H + HTGE+ + C CG
Sbjct: 13 CTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 375 KKL 377
K+
Sbjct: 72 KRF 74
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 39/137 (28%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C K FR+ + +KH+ G ++ V C C F S L H HTG K ++C
Sbjct: 13 CTKMFRDNSAMRKHLHTH--GPRVHV-----CAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 136 HV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCP- 192
C K +S L+TH +H TGD R VCP
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIH----------------TGD------------RPYVCPF 97
Query: 193 -KCNRDYRNPRNMRKHL 208
CN+ + N++ H+
Sbjct: 98 DGCNKKFAQSTNLKSHI 114
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 30/129 (23%)
Query: 110 CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFI 169
C F + S + H+ +H G + + C C KA+ LK H L+H EK +
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ------- 64
Query: 170 IDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGC--DECGKML 227
CT + C + + N+R H+ R+HT R Y C D C K
Sbjct: 65 -----CTFE--------------GCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKF 104
Query: 228 KSRDSLNTH 236
+L +H
Sbjct: 105 AQSTNLKSH 113
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 316 CDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAK--IKGSLKQHMITHTGERKYCCH 371
C C K F E KL +H+ G+K C CG + + +L+ H+ HTG+R Y C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 372 I--CGKKL--RGKLKEHML 386
C KK LK H+L
Sbjct: 97 FDGCNKKFAQSTNLKSHIL 115
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 40 KTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTM--CKKTFRNKATFQKHMQRAHVGL 97
+ C C K++ + +++H +LVH CT C K F + H+ R H G
Sbjct: 33 RVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGD 90
Query: 98 KISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
+ V CN KF+ + L HI +H KN
Sbjct: 91 RPYVCPFDGCN---KKFAQSTNLKSHILTHAKAKN 122
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 272 SGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNK 331
SG +G+ C C+K + LK+HN K TG + F+C C K +F K+ L +
Sbjct: 3 SGSSGVE---CPTCHKKFLSKYYLKVHNRK----HTGE--KPFECPKCGKCYFRKENLLE 53
Query: 332 HKN---WAHGDKFHLCKVCGAKIKG--SLKQHMITHTGERKYCCHICGKKLRGK--LKEH 384
H+ ++ C VC + L+ HM++HTGE Y C C ++ K L+ H
Sbjct: 54 HEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 385 ML 386
M+
Sbjct: 114 MI 115
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 26/144 (18%)
Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S S EC CH KF +K L H HTG K ++C C K Y K + L HE
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY----FRKENLLEHEARN 58
Query: 160 VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
+ S++ F C C +R +R H+ HT Y
Sbjct: 59 CMNRSEQVF---------------------TCSVCQETFRRRMELRLHM-VSHTGEMPYK 96
Query: 220 CDECGKMLKSRDSLNTHKKIQHEG 243
C C + + L +H H G
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX--XXXX 248
CP C++ + + ++ H R+ HT + + C +CGK +++L ++HE
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENL-----LEHEARNCMNRS 63
Query: 249 XXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
C C + + L H+ HTG + C C++ + L+ H IK H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 44 CPICNKSYPGARNMRKH--LRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISV 101
CP C K Y N+ +H ++ TC++C++TFR + + HM +H G
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTG----- 91
Query: 102 SKHFECNYCHAKFSNKSLLSDH-ISSHTG 129
++C+ C +F K L H I H+G
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK--GSLKQHMITHTGERK 367
P+E CD+ F +K L+ H G K C++C L QH+ THTGE+
Sbjct: 8 PVES-----CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F K H+ R H G K F+C C FS + L+ HI +HTG K + C
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTG-----QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ HT +H ++K
Sbjct: 66 DICGRKFATLHTRDRHTKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 255 DYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
+ C ++ K L HI HTG C+IC + ++ L H I+TH TG + F
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH-IRTH---TGE--KPF 63
Query: 315 KCDLCDKEF 323
CD+C ++F
Sbjct: 64 ACDICGRKF 72
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + N+ H+R +HT + + C C + LN H + H G
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGH 274
CD CG K+ +T H H
Sbjct: 60 ----EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + + +L+TH +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQ-----CRICMRNFSQHTGLNQHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + H K HL+
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHT-KIHLR 87
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 44 CPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISV 101
CP+ C++ + N+ H+R +H C +C + F +H+ R H G
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHI-RTHTG----- 59
Query: 102 SKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 299 NIKTHLQF-TGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI 351
N+ TH++ TG + F+C +C + F + LN+H G+K C +CG K
Sbjct: 21 NLDTHIRIHTGQ--KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 31/111 (27%)
Query: 131 KNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
+ Y C V CD+ +S + L TH +H +K +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-------------------------- 36
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
C C R++ + +H+R HT + + CD CG+ + + + H KI
Sbjct: 37 --CRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDRHTKI 84
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 12 CDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ K HT +H ++K
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
P+E CD+ F +L +H G K C++C S L H+ THTGE+
Sbjct: 8 PVES-----CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 63 FACDICGRKF 72
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + D L H +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + + +H+R +HT + + C C + D L TH + H G
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 60 ----EKPFACDICG----RKFARSDERKRHTKI 84
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 43 TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
CP+ C++ + + + +H+R +H C +C + F H+ R H G
Sbjct: 6 ACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C K+F +K+ +HM H+GL+ + C C KF K L H+ HTG+K Y+C
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLGLRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 136 HVCDKAYSCRKALKTHT 152
++C K + R + H
Sbjct: 69 NICAKRFMWRDSFHRHV 85
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S K + C C F++KS H+S H GL+ Y C VC K + + L H +H K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 160 VIKSS--KKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRN 203
+ + K F+ W D R VT C K + +N
Sbjct: 65 PYECNICAKRFM----------WRDSFHRHVTSCTKSYEAAKAEQN 100
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 319 CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK--IKGSLKQHMITHTGERKYCCHICGKK 376
C K F K + ++H + G + + C VCG K +K L HM HTG + Y C+IC K+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 377 L 377
Sbjct: 75 F 75
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCHICGKKLRGKLKEHMLN 387
GDK + C+ CG K +HM H G R Y C +CGKK K+K H++
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF--KMKHHLVG 55
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 257 CGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQF-TGVPIEKFK 315
CG + +K H+S H G+ + C +C K + H++ H++ TG I+ ++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK-----HHLVGHMKIHTG--IKPYE 67
Query: 316 CDLCDKEFFEKKKLNKH 332
C++C K F + ++H
Sbjct: 68 CNICAKRFMWRDSFHRH 84
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 193 KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
+C + + + +H+ +H +R YGC CGK K + L H KI
Sbjct: 14 QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNK 287
C CG K+ K+ L H+ HTGI + C IC K
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 65 HDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHI 124
H++ C + F +H+ R H G K F+C C FS L+ HI
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHI 54
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
+HTG K + C +C + ++ K HT +H
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 303 HLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMI 360
H + P+E CD+ F +L +H G K C++C S L H+
Sbjct: 1 HERPYACPVES-----CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 361 THTGERKYCCHICGKKL 377
THTGE+ + C ICG+K
Sbjct: 56 THTGEKPFACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 110 CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
C +FS L+ HI HTG K ++C +C + +S L TH H EK
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + D L H +I H G C C + L+ HI
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 87
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + + +H+R +HT + + C C + D L TH + H G
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 59
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 60 ----EKPFACDICG----RKFARSDERKRHTKI 84
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 11 CDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 136 HVCDKAYSCRKALKTHTLLH 155
+C + ++ K HT +H
Sbjct: 65 DICGRKFARSDERKRHTKIH 84
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGS--LKQHMITHTGERK 367
P+E CD+ F +L +H G K C++C S L H+ THTGE+
Sbjct: 7 PVES-----CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 368 YCCHICGKKL 377
+ C ICG+K
Sbjct: 62 FACDICGRKF 71
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 110 CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
C +FS L+ HI HTG K ++C +C + +S L TH H EK
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 216 RKYGC--DECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISG 273
R Y C + C + D L H +I H G C C + L+ HI
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 55
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQ 305
HTG C IC + +A + K H K HL+
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHT-KIHLR 86
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 187 RVTVCP--KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGX 244
R CP C+R + + +H+R +HT + + C C + D L TH + H G
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG- 58
Query: 245 XXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGI 277
CD CG K+ SD HT I
Sbjct: 59 ----EKPFACDICG----RKFARSDERKRHTKI 83
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 75 MCKKTFRNKATFQ-KHMQ---RAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHT 128
MC NK F+ H+Q R H G K ++C++ C +FS L H HT
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKP-----YQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 129 GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVI 161
G+K ++C C + +S LKTHT H EK
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 45 PICNKSYPGARNMRKHLRLVHDKNSTTTCTM--CKKTFRNKATFQKHMQRAHVGLKISVS 102
P CNK Y +++ H R H C C++ F ++H QR H G+K
Sbjct: 12 PGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKP--- 66
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH--VCDKAYSCRKALKTHTLLH 155
F+C C KFS L H +HTG K + C C K ++ L H +H
Sbjct: 67 --FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFH 342
CNK Y + L++H+ K TG + ++CD C++ F +L +H+ G K
Sbjct: 14 CNKRYFKLSHLQMHSRK----HTGE--KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 343 LCKVCGAKIKGS--LKQHMITHTGERKYCC 370
CK C K S LK H THTGE+ + C
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 254 CDY--CGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPI 311
CD+ C ++ L H HTG+ CK C + ++ + LK H +TH TG
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTH---TGEKP 94
Query: 312 EKFKCDLCDKEFFEKKKLNKHKN 334
+ C K+F +L +H N
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHN 117
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 257 CGAKYPNKYTLSDHISGHTGIPNHIC--KICNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
C +Y L H HTG + C K C + ++ + LK H + TGV + F
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR----HTGV--KPF 67
Query: 315 KCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITH 362
+C C ++F L H G+K C+ + K + ++ H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 194 CNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
C R + +++H RR HT V+ + C C + D L TH +
Sbjct: 44 CERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 319 CDKEFFEKKKLNKHKNWAHGDKFHLC--KVCGAKIKGS--LKQHMITHTGERKYCCHICG 374
C+K +F+ L H G+K + C K C + S LK+H HTG + + C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 375 KKL 377
+K
Sbjct: 74 RKF 76
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 179 EWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKK 238
EW +RR C +C + + + ++ KH RR HT + Y CDECGK R L H +
Sbjct: 10 EWQQRERRRYK-CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 239 I 239
+
Sbjct: 68 V 68
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
+ ++C+ C FS+ S LS H +HTG K YKC C KA+ R L H +H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTG 364
++KCD C K F L+KH+ G+K + C CG + L H HTG
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHT 275
R+Y CDECGK L+ H++ H G CD CG + + L H HT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYK-----CDECGKAFIQRSHLIGHHRVHT 70
Query: 276 G 276
G
Sbjct: 71 G 71
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG 129
C C K+F + + KH +R H G K ++C+ C F +S L H HTG
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKP-----YKCDECGKAFIQRSHLIGHHRVHTG 71
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 106 ECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
+C C FS K L H+ HTG+K YKC CD A + +L H +H E+ K
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 315 KCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC--GAKIKGSLKQHMITHTGERKYCCHI 372
KC++C K F K KL H G K + CK C A SL +H+ H+ ER + C I
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 373 C 373
C
Sbjct: 70 C 70
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +C K F K + HM R H G+K ++C C ++ S L+ H+ H+ +
Sbjct: 11 CEVCGKCFSRKDKLKTHM-RCHTGVKP-----YKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEKVIKS 163
+KC +C A L H H + S
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 272 SGHTGIPNHICKICNKGYACAASLKIHNIKTHLQ-FTGVPIEKFKCDLCDKEFFEKKKLN 330
SG +G H C++C K ++ + +KTH++ TGV + +KC CD + LN
Sbjct: 3 SGSSGP--HKCEVCGKCFS-----RKDKLKTHMRCHTGV--KPYKCKTCDYAAADSSSLN 53
Query: 331 KHKNWAHGDKFHLCKVC--GAKIKGSLKQHMITHTGE 365
KH ++ C++C ++ L H+ +HTG+
Sbjct: 54 KHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK 313
C+ CG + K L H+ HTG+ + CK C+ A ++SL H ++ H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSD-----ERP 64
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGD 339
FKC +C +L H GD
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSK 103
C +C K + ++ H+R H C C + ++ KH+ R H S +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHL-RIH-----SDER 63
Query: 104 HFECNYCHAKFSNKSLLSDHISSHTG 129
F+C C N S L+ H+ SHTG
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXX 250
C C + + ++ H+R HT V+ Y C C SLN H +I +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD------ER 63
Query: 251 XXXCDYCGAKYPNKYTLSDHISGHTG 276
C C N L+ H+ HTG
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
K + C C FS S+L H HTG K YKC C KA+S L H +H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG 243
C +C + + + +H +RVHT + Y C ECGK L H++I G
Sbjct: 17 CVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHT 128
C C K F + +H QR H G K ++C C FS S L +H HT
Sbjct: 17 CVECGKAFSRSSILVQH-QRVHTG-----EKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 339 DKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKL 377
+K + C CG S L QH HTGE+ Y C CGK
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHV-GLKISVSKHFE-CNYCHAKFSNKSLLSDHISSHTGLKNY 133
C + F ++ H+ H+ G + H+ C+ F + +L H+ HTG K +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 134 KCHV--CDKAYSCRKALKTHTLLHEQEKVI----KSSKKEFIIDTGDCTLDEWNDFIKRR 187
KC C K+YS + LKTH H EK + K F + D + +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS-NASDRAKHQNRTHSNEK 127
Query: 188 VTVC--PKCNRDYRNPRNMRKHLRRVH 212
VC P C + Y +P ++RKH++ VH
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 47 CNKSYPGARNMRKHLRLVHDKNSTTTCTM--CKKTFRNKATFQKHMQRAHVGLKISVSKH 104
C KSY N++ HLR H C C K F N + KH R H K V K
Sbjct: 75 CRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK- 132
Query: 105 FECNYCHAKFSNKSLLSDHISS 126
C ++++ S L H+ +
Sbjct: 133 --LPGCTKRYTDPSSLRKHVKT 152
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 257 CGAKYPNKYTLSDHISGHTGIPNHIC--KICNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
C Y L H+ HTG ++C + C+K ++ A+ H +TH + +
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN-----EKPY 129
Query: 315 KCDL--CDKEFFEKKKLNKHKNWAHG 338
C L C K + + L KH HG
Sbjct: 130 VCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 257 CGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
CGA Y + L H+ HTG CK C KG+ L H++ T + F
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL------THTGEKNF 73
Query: 315 KCDL--CDKEFFEKKKLNKHKNWAHGDKF--HLCKV--CGAKIK--GSLKQHMITHTGER 366
CD CD F K + KH N H K ++C CG K LK H +HT +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 367 KYCC--HICGKK--LRGKLKEH 384
Y C C K+ L +LK H
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRH 155
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 33/144 (22%)
Query: 101 VSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKC--HVCDKAYSCRKALKTHTLLHE 156
V K + C++ C A ++ L H+ HTG K + C C+K ++ L H+L H
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 157 QEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT-SV 215
EK F D+ C L + NM+KH R H +
Sbjct: 69 GEK-------NFTCDSDGCDLR-------------------FTTKANMKKHFNRFHNIKI 102
Query: 216 RKYGC--DECGKMLKSRDSLNTHK 237
Y C + CGK K + L H+
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQ 126
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 47 CNKSYPGARNMRKH-LRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSK-H 104
C K + ++ +H L +KN T C F KA +KH R H +KI V H
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH-NIKICVYVCH 108
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKC--HVCDKAYSCRKALKTHTLLHEQEKVIK 162
FE C F + L H SHT Y+C CDK +S LK H +H K
Sbjct: 109 FE--NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 166
Query: 163 SSKKEFIIDT 172
F+ T
Sbjct: 167 DDSCSFVGKT 176
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 68 NSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSH 127
+S C +C K FR+ +H L S K + C C +F K +S H+ SH
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHK------LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Query: 128 TGL--KNYKCHVCDKAYSCRKALKTH 151
G K Y C C K +S L H
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 316 CDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGE--RKYCCH 371
C++C K F + LN+HK G+K + C VCG + K + H+ +H G + Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 372 ICGKKL 377
CGK
Sbjct: 70 SCGKGF 75
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 37/117 (31%), Gaps = 29/117 (24%)
Query: 128 TGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRR 187
+G C +C K + L H L H EK
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS------------------------- 37
Query: 188 VTVCPKCNRDYRNPRNMRKHLRRVHTSVRK-YGCDECGKMLKSRDSLNTHKKIQHEG 243
CP C ++ M H+R SV K Y C CGK D LN H K H G
Sbjct: 38 ---CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK 313
C+ CG + + Y L+ H H+G + C +C + + H +++H G P
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKP--- 65
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAH 337
+ C C K F LN H H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 344 CKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKLRGKLKEHM 385
C++CG + L +H ++H+GE+ Y C +CG LR K K+ M
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCG--LRFKRKDRM 51
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 26/115 (22%)
Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S S C C F + L+ H SH+G K Y C VC + + + H H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD--- 59
Query: 160 VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTS 214
S K +I C C + + P ++ H+++VH+
Sbjct: 60 --GSVGKPYI---------------------CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXX 248
C C + +R+ ++ +H + H+ + Y C CG K +D ++ H + H+G
Sbjct: 8 VACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG---SV 62
Query: 249 XXXXXCDYCGAKYPNKYTLSDHISGH 274
C CG ++ DH++GH
Sbjct: 63 GKPYICQSCG----KGFSRPDHLNGH 84
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 106 ECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
EC+YC F + L+ H+ +HTG K YKC C+ A + + +L+ H H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
C YCG + + Y L+ H+ HTG + C+ C A SL+ H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
K F+C C FS L+ HI +HTG K + C +C + ++ K H + +++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 163 SSKKEFI 169
+E +
Sbjct: 62 DKVEELL 68
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 344 CKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKL 377
C++C S L H+ THTGE+ + C ICG+K
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
C C R++ ++ H+R HT + + CD CG+ D H+ IQH
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAH 337
C+IC + ++ + L H I+TH TG + F CD+C ++F + +H++ H
Sbjct: 6 CRICMRNFSRSDHLTTH-IRTH---TGE--KPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 67 KNSTTTCTM--CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSD 122
+ +T TC C KT+ + + H+ R H G K + C++ C KF+ L+
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHL-RTHTGEKP-----YHCDWDGCGWKFARSDELTR 56
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
H HTG + ++C CD+A+S L H H
Sbjct: 57 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 67 KNSTTTCTM--CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSD 122
+ +T TC C KT+ + + H+ R H G K + C++ C KF+ L+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHL-RTHTGEKP-----YHCDWDGCGWKFARSDELTR 55
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
H HTG + ++C CD+A+S L H H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 97 LKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHE 156
L K F C +C F+ L H +HT + Y C +C KA+ + L+ H +H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 157 QEKVIK 162
+EK K
Sbjct: 70 KEKPFK 75
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ 157
+ C+ CH F + L DH H+ K +KC C K + + L H LH Q
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXX 249
+C C R + N+ H R HT R Y CD C K + +D L H+ I
Sbjct: 19 ICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIH------SKE 71
Query: 250 XXXXCDYCGAKYPNKYTLSDHISGH 274
C CG + TL+ H + H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 254 CDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK 313
C +CG + Y L H HT + C IC+K + L+ H ++ +
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH------RYIHSKEKP 73
Query: 314 FKCDLCDKEFFEKKKLNKHKNW 335
FKC C K F + + L HK
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTL 95
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 343 LCKVCGAKIKGS--LKQHMITHTGERKYCCHICGKKLRGK--LKEH 384
+CK CG S L H THT ER Y C IC K R + L++H
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 281 ICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDK 340
ICK C + + + +L IH +TH + CD+C K F + L H+ +K
Sbjct: 19 ICKFCGRHFTKSYNLLIHE-RTH-----TDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 341 FHLCKVCG 348
C+ CG
Sbjct: 73 PFKCQECG 80
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVC--GAKIKGSLKQHMITHTGERKYC 369
++F C C + F + L H+ ++ + C +C + + L+ H H+ E+ +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 370 CHICGK 375
C CGK
Sbjct: 76 CQECGK 81
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 60 HLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSL 119
H L+ D C +CK+++ + ++H S K + C YC F
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIH------SWEKKYPCRYCEKVFPLAEY 65
Query: 120 LSDHISSHTGLKNYKCHVCDKAYSCRKALKTHT-LLHEQE 158
+ H HTG + Y+C C K++ + + +H +H Q+
Sbjct: 66 RTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 34/103 (33%)
Query: 276 GIPNHICKICNKGYACAASLKIH-NIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKN 334
G +IC +C + Y C SL+ H NI + + K+ C C+K F + KH+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEK-------KYPCRYCEKVFPLAEYRTKHE- 70
Query: 335 WAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKL 377
I HTGER+Y C CGK
Sbjct: 71 -------------------------IHHTGERRYQCLACGKSF 88
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 31 DKWRALIKNKTK-TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKH 89
D + ++ + C +C +SY ++R+H +H C C+K F A ++
Sbjct: 11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVF-PLAEYRTK 68
Query: 90 MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISS 126
+ H G + ++C C F N +S HI S
Sbjct: 69 HEIHHTG-----ERRYQCLACGKSFINYQFMSSHIKS 100
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%)
Query: 129 GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
G Y C VC ++Y C +L+ H +H EK E + + R
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHT 213
C C + + N + M H++ VH+
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHS 103
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
C K + + + H+ R H G K ++C + C +F+ L+ H HTG K +
Sbjct: 23 CTKVYTKSSHLKAHL-RTHTGEKP-----YKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 134 KCHVCDKAYSCRKALKTHTLLHE 156
+C VC++++S L H H+
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 35/119 (29%)
Query: 182 DFIKRRVTVC--PKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
D KRR+ C P C + Y +++ HLR HT + Y C G
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEG--------------- 52
Query: 240 QHEGXXXXXXXXXXCDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
CD+ ++ L+ H HTG C +CN+ ++ + L +H
Sbjct: 53 --------------CDW---RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 223 CGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYC---GAKYPNKYTLSDHISGHTGIPN 279
C + + L TH ++H G + C G + KY L +HI HTG
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 280 HICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKH 332
C C K +A + +LKIH +TH TG + FKC+ CD+ F KH
Sbjct: 91 FPCPFPGCGKIFARSENLKIHK-RTH---TGE--KPFKCEFEGCDRRFANSSDRKKH 141
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKIS---VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +TF H+ HVG V EC F K L +HI HTG K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 133 YKCHV--CDKAYSCRKALKTHTLLHEQEKVIK 162
+ C C K ++ + LK H H EK K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGL 130
C K+F+ K H+ R H G K F C + C F+ L H +HTG
Sbjct: 65 CPREGKSFKAKYKLVNHI-RVHTG-----EKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 131 KNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSS 164
K +KC CD+ ++ K H +H +K SS
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
R C C + YR+ + +H RR H R C ECGK + + +N H K+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKV 160
+ F CN+C + + S LS H +H G + C C K + + + H +H+ +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQ 91
C C K+Y A + +H R H +C C K FR+++ +H++
Sbjct: 7 CNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 110 CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
C +FS L+ HI HTG K ++C +C + +S L TH H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 295 LKIHNIKTHLQFTGVPIEKFKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK 352
++ H + L + + + C + CD+ F +L +H G K C++C
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 353 GS--LKQHMITHT 363
S L H+ THT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHT 128
C + F +H+ R H G K F+C C FS L+ HI +HT
Sbjct: 27 CDRRFSRSDELTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 35.4 bits (80), Expect = 0.049, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAH 94
CP+C +S+ +HLRL+H C C TF + +H+ + H
Sbjct: 31 CPVCGESFASKGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +C ++F +K ++H++ H ++ F C YC A F + L+ HI+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHA------AQVFPCKYCPATFYSSPGLTRHIN------- 77
Query: 133 YKCH 136
KCH
Sbjct: 78 -KCH 80
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 257 CGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
CGA Y + L H+S HTG CK C KG+ L H++ T + F
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL------THTGEKNF 64
Query: 315 KCDL--CDKEFFEKKKLNKHKNWAHGDK 340
CD CD F K + KH N H K
Sbjct: 65 TCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 28/105 (26%)
Query: 110 CHAKFSNKSLLSDHISSHTGLKNYKC--HVCDKAYSCRKALKTHTLLHEQEKVIKSSKKE 167
C A ++ L H+S HTG K + C C+K ++ L H+L H E K
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-------KN 63
Query: 168 FIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVH 212
F D+ C L R T NM+KH R H
Sbjct: 64 FTCDSDGCDL---------RFTT----------KANMKKHFNRFH 89
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHT 152
F C C F+ + L H SHT K Y C +C++A++ R L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG 243
VC C R + ++++H R HT+ + Y C C + RD L H + H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVG 96
C +C +++ ++++H R H C +C + F + +H Q+ H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.097, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS T K ++C CDK++ R AL +H ++H EK
Sbjct: 5 SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 307 TGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDK 340
+G + F+CD CDK F ++ LN H+ G+K
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS T K YKC+ C KA+ R L TH ++H EK
Sbjct: 5 SSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 213 TSVRKYGCDECGKMLKSRDSLNTHKKI 239
T + Y C ECGK ++R +L TH+ I
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVI 34
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKK 238
+C +C + P ++KH+R HT VR Y C C K++ +L H K
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 342 HLCKVCGAKIK--GSLKQHMITHTGERKYCCHIC--GKKLRGKLKEHM 385
++C+ CG + K LK+H+ THT R Y C C K +G L +HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
+ C C + S+L HI +HT ++ Y C C+ ++ + L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLK 228
+CP C+++YR+P + R H + V C ECG L+
Sbjct: 68 PLCPACDKEYRDPLDRRFHAQPV-------ACPECGPYLE 100
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLK 228
+CP C+++YR+P + R H + V C ECG L+
Sbjct: 68 PLCPACDKEYRDPLDRRFHAQPV-------ACPECGPYLE 100
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSS 164
K YKC C K + CR+ L TH ++H EK S
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLK 131
K + CN C FS KS+LS H +HTG K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
K Y+C+ C KA+S R +L TH +H +K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKI 239
+ Y C++CGK R SL TH+ I
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAI 34
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLK 131
K +ECN C FS +S L+ H + HTG K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLK 131
KHFEC C F+ KS LS H HTG K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 315 KCDLCDKEFFEKKKLNKH-KNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHIC 373
K L D F+ K L ++ D FHL K K+ ++ T T ++K+ CHI
Sbjct: 212 KLILVDYVLFKGKWLTPFDPSFTEADTFHLDKYRAIKVPMMYREGNFTSTFDKKFRCHIL 271
Query: 374 GKKLRG 379
+G
Sbjct: 272 KLPYQG 277
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 178 DEWNDFI-KRRVTVCPKCNRDYRNPR-NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNT 235
++W I +R VCP CN R ++KH+ C C K KS+ LN
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 236 HKKIQH 241
H +H
Sbjct: 73 HTMAEH 78
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 31 DKW-RALIKNKTKTCPICN----KSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKAT 85
++W RA+ + CP CN K+ G ++KH+ + C C+K F++KA
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVG---LKKHMEVCQKLQDALKCQHCRKQFKSKAG 69
Query: 86 FQKHMQRAH 94
H H
Sbjct: 70 LNYHTMAEH 78
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 105 FECNYCHAKFSNKSLLSDHISS 126
+ CN C+A+FS S LS+H+ S
Sbjct: 117 YVCNVCNARFSTMSALSEHLRS 138
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 105 FECNYCHAKFSNKSLLSDHISS 126
+ CN C+A+FS S LS+H+ S
Sbjct: 99 YVCNVCNARFSTMSALSEHLRS 120
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 130 LKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
+K Y C+ C KA+S +L TH ++H EK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSS 164
K YKC+ C KA+ L TH ++H EK S
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD 221
+C C + + P ++ H+++VHTS R + C
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKH 332
H+G + C IC+ + + ++K+H ++ H + + KF C CD K L H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTE----NVAKFHCPHCDTVIARKSDLGVH 64
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 151 HTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT-------VCPKCNRDYRNPRN 203
H L EQ+++I++ K I + LDE + ++ R + VCP C + + +
Sbjct: 33 HQLTPEQKRLIRAIVKTLIHNPQ--LLDE-SSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 204 MRKHLRRV-HTSVRKYGCDECGKMLKSRDSLNTH 236
+++H+R HT V C C K S DS H
Sbjct: 90 LKQHIRYTEHTKV----CPVCKKEFTSTDSALDH 119
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAH 94
CP+C + + ++++H+R T C +CKK F + + H+ + H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
K +KC +C K++ R L H+++H EK
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 314 FKCDLCDKEFFEKKKLNKH 332
FKCD+C K F + +LN+H
Sbjct: 13 FKCDICGKSFCGRSRLNRH 31
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
K Y+C VC KA+S R++L H +H +K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 64 VHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDH 123
H C+ C KTFR K H +R H + + F C+ C F+ ++ ++ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--FVCSKCGKTFTRRNTMARH 66
Query: 124 I 124
Sbjct: 67 A 67
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGXXXXXXXXXXCDYCGAKYPNKYTLSD 269
R HT + Y C C K + + L+ H K H+ C CG + + T++
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD--PNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 270 HI 271
H
Sbjct: 66 HA 67
>pdb|1YUI|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX,
Regularized Mean Structure
pdb|1YUJ|A Chain A, Solution Nmr Structure Of The Gaga FactorDNA COMPLEX, 50
Structures
Length = 54
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 43 TCPICNKSYPGARNMRKHLRLVH 65
TCPIC +RN+R+HL L H
Sbjct: 26 TCPICYAVIRQSRNLRRHLELRH 48
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 213 TSVRKYGCDECGKMLKSRDSLNTHKK 238
+ V+ YGC ECGK +S+ L H +
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMR 31
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVH-TSVRKYGCDECGKMLKSRDSLNTHKKIQHE 242
C C+R Y + N +H H +V+ Y C C K +D++ H KI H+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S +G K + C C+KA+S + L H H +EK
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
S +G K Y+C C K++S R +L H LH
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
K YKC+ C KA+ R +L H H EK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSS 164
K +KC C K +S R AL H LH EK S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKI 239
+ Y C ECGK R +L TH+KI
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKI 34
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSS 164
K Y+C C KA++ R L TH +H EK S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKI 239
+ YGC+ECGK S+ L H++I
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRI 32
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKV 160
S +G K Y C+ C K +S + L H +H EK+
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKL 38
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 24 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 79
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 80 VVKLKQIEHTLN 91
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 9 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 64
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 65 VVKLKQIEHTLN 76
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 307 TGVPIEKFKCDL--CDKEFFEKKKLNKHKNWAH-GDKFHLCK--VCGAKI--KGSLKQHM 359
+G+P CD C + F ++ LN HK + H K C CG K LK+HM
Sbjct: 6 SGMP-----CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 360 ITHTGERKYCCHICG 374
H+ R Y C G
Sbjct: 61 KLHSDTRDYICEFSG 75
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKEIEHTLN 90
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 24 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 79
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 80 VVKLKQIEHTLN 91
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQ 240
R Y C ECGK + + SL H++I
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTIGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 24 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 79
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 80 VVKLKQIEHTLN 91
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTIGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTIGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 24 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 79
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 80 VVKLKQIEHTLN 91
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKEIEHTLN 90
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 24 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 79
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 80 VVKLKQIEHTLN 91
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 24 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 79
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 80 VVKLKQIEHTLN 91
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMIT---HTGERKYCCHICGKKL 377
KE F KK N +N AH D+F K G GS + M+ TG Y I K+
Sbjct: 23 KEDFLKKWENPAQNTAHLDQFERIKTLGT---GSFGRVMLVKHMETGNH-YAMKILDKQK 78
Query: 378 RGKLK--EHMLN 387
KLK EH LN
Sbjct: 79 VVKLKQIEHTLN 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,569,929
Number of Sequences: 62578
Number of extensions: 452283
Number of successful extensions: 2340
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 906
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)