RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4688
(388 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 82.9 bits (206), Expect = 7e-19
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
+ + + Y C ECGK D L H++ H G+K Y+C CG +
Sbjct: 8 SSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEK-----PYKCPECGKSFS 60
Query: 263 NKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDK 321
+K L+ H HTG + C C K ++ A+L+ H +TH TG EK + C C K
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTH---TG---EKPYACPECGK 113
Query: 322 EFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
F + L H+ G+K + C CG + +L H THTGE+ Y C CGK
Sbjct: 114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Score = 82.1 bits (204), Expect = 1e-18
Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 41/220 (18%)
Query: 79 TFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVC 138
+ ++ G K + C C FS L++H +HTG K YKC C
Sbjct: 2 SEFGSSSSVAQ-AALEPG-----EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPEC 55
Query: 139 DKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDY 198
K++S +K L H H EK K CP+C + +
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYK----------------------------CPECGKSF 87
Query: 199 RNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCG 258
N+R H +R HT + Y C ECGK L H++ H G+K Y+C CG
Sbjct: 88 SQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEK-----PYKCPECG 140
Query: 259 AKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
+ + L H HTG + C C K ++ +L +H
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 74.8 bits (185), Expect = 5e-16
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
CP+C + + ++ +H +R HT + Y C ECGK + L H++ H G+K
Sbjct: 24 CPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEK----- 76
Query: 251 EYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVP 310
Y+C CG + + L H HTG + C C K ++ A L+ H +TH TG
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ-RTH---TG-- 130
Query: 311 IEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI---KGSLKQHMITHTGER 366
EK +KC C K F + L+ H+ G+K + C CG K + +L H THTG++
Sbjct: 131 -EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG-KSFSRRDALNVHQRTHTGKK 188
Score = 74.4 bits (184), Expect = 6e-16
Identities = 64/208 (30%), Positives = 89/208 (42%), Gaps = 47/208 (22%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTT-----TCTMCKKTFRNKATFQKHMQRAHVGL 97
CP C KS+ + ++ +H R H T C C K+F +K +H QR H G
Sbjct: 23 ACPECGKSFSRSDHLAEHQR-TH-----TGEKPYKCPECGKSFSDKKDLTRH-QRTHTG- 74
Query: 98 KISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ 157
K ++C C FS ++ L H +HTG K Y C C K++S L+ H H
Sbjct: 75 ----EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 158 EKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRK 217
EK K CP+C + + N+ H +R HT +
Sbjct: 131 EKPYK----------------------------CPECGKSFSREDNLHTH-QRTHTGEKP 161
Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGKK 245
Y C ECGK RD+LN H++ H GKK
Sbjct: 162 YKCPECGKSFSRRDALNVHQRT-HTGKK 188
Score = 34.0 bits (79), Expect = 0.039
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 352 KGSLKQHMITHTGERKYCCHICGK 375
S GE+ Y C CGK
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGK 29
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 71.9 bits (177), Expect = 3e-15
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 218 YGCDECGKMLKSRDSLNTHKKIQ--HEGKKVKVKYEYECDYCGAKYPNK-----YTLSDH 270
D C + S++ L H + H +K E+ C + G + Y L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERK-----EFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 271 ISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKC--DLCDKEFFE 325
+ HTG H C C K Y+ +LK H +++H TG EK + C + C K F
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSH---TG---EKPYMCEHEGCSKAFSN 111
Query: 326 KKKLNKHKNWAH-GDKFHLCKV--CGAK--IKGSLKQHMITHTG 364
KH+N H +K ++CK+ C + SL++H+ T G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 64.5 bits (158), Expect = 9e-13
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 32/174 (18%)
Query: 72 TCTMCKKTFRNKATFQKHM--QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG 129
C + F ++ H+ + H K V C+ F + +L H+ HTG
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 130 LKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRR 187
K +KC C K+YS + LKTH H EK C
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM------------CEH---------- 102
Query: 188 VTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKI 239
C++ + N + KH R H++ + Y C C K SL H K
Sbjct: 103 ----EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 53.4 bits (129), Expect = 8e-09
Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 44/186 (23%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISS---HTGLKNYKCHVCD-----KAYSCRKALKTHTLL 154
+ C +F ++ L HI+S H K + CH + + + L H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 155 HEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTS 214
H EK K CT + C + Y N++ HL R HT
Sbjct: 62 HTGEKPHK------------CTFEG--------------CRKSYSRLENLKTHL-RSHTG 94
Query: 215 VRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDH 270
+ Y C+ C K + H+ H +K Y C C +Y + +L H
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK-----PYVCKLPGCTKRYTDPSSLRKH 149
Query: 271 ISGHTG 276
+ G
Sbjct: 150 VKTVHG 155
Score = 49.9 bits (120), Expect = 1e-07
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAH---GDKFHLCKVCGAKI-------KGSLKQHMI 360
E + D C +EF +++L H N H K +C G + L HM
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 361 THTGERKYCCHI--CGKK--LRGKLKEHM 385
HTGE+ + C C K LK H+
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 49.5 bits (119), Expect = 2e-07
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHD-------KNSTTTCTMCKKTFRNKATFQKHMQRAHV 95
C++ + + H+ H C+ + F+ + HM R H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHT 63
Query: 96 GLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCH--VCDKAYSCRKALKTH 151
G K +C + C +S L H+ SHTG K Y C C KA+S H
Sbjct: 64 G-----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 49.1 bits (118), Expect = 2e-07
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV 190
+ + C + + ++ L H + I +KEF+ C W
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHI----NSEHIHGERKEFV-----C---HWGG-------- 41
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKV 248
C + R ++ + H+ R HT + + C C K ++L TH + H G+K
Sbjct: 42 CSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEK--- 96
Query: 249 KYEYECDY--CGAKYPNKYTLSDHISG-HTGIPNHICKI--CNKGYACAASLKIHNIKTH 303
Y C++ C + N + H + H+ ++CK+ C K Y +SL+ H +KT
Sbjct: 97 --PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH-VKTV 153
Score = 36.0 bits (84), Expect = 0.007
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
C K F N + KH R H K + C C ++++ S L H+ + G
Sbjct: 105 CSKAFSNASDRAKHQNRTHSN-----EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 68.1 bits (167), Expect = 5e-14
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 41/170 (24%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGK---KVKVKYEYECDYCGAKYPNKY 265
+ + + C + + L TH ++H G V Y EC G + KY
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 266 TLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CD 320
L +HI HTG C C K +A + +LKIH +TH TG EK FKC+ CD
Sbjct: 77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTH---TG---EKPFKCEFEGCD 129
Query: 321 KEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCC 370
+ F K+HM HT ++
Sbjct: 130 RRFAN--------------------------SSDRKKHMHVHTSDKSGPS 153
Score = 59.2 bits (144), Expect = 7e-11
Identities = 40/180 (22%), Positives = 57/180 (31%), Gaps = 33/180 (18%)
Query: 47 CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVG---LKISVSK 103
S + + + + C +TF H+ HVG V
Sbjct: 3 SGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 104 HFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVI 161
EC F K L +HI HTG K + C C K ++ + LK H H EK
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 162 KSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCD 221
K C + C+R + N + +KH VHTS +
Sbjct: 122 K------------CEFEG--------------CDRRFANSSDRKKH-MHVHTSDKSGPSS 154
Score = 56.5 bits (137), Expect = 7e-10
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 40 KTKTCPICNKSYPGARNMRKHLRLVH--------DKNSTTTCTMCKKTFRNKATFQKHMQ 91
++ C++++ + H+ + H C K+F+ K H+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI- 82
Query: 92 RAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKA 147
R H G K F C + C F+ L H +HTG K +KC CD+ ++
Sbjct: 83 RVHTG-----EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 148 LKTHTLLHEQEK 159
K H +H +K
Sbjct: 138 RKKHMHVHTSDK 149
Score = 48.4 bits (116), Expect = 4e-07
Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 51/191 (26%)
Query: 78 KTFRNKATFQKHM--QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYK- 134
+ + ++ + + C FS L H++ +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEA-----QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56
Query: 135 --------CHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
C K++ + L H +H EK C
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP------------CPFPG------- 97
Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGC--DECGKMLKSRDSLNTHKKIQHEGK 244
C + + N++ H +R HT + + C + C + + H + H
Sbjct: 98 -------CGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSD 148
Query: 245 KVKVKYEYECD 255
K
Sbjct: 149 K-----SGPSS 154
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 66.0 bits (162), Expect = 1e-13
Identities = 35/146 (23%), Positives = 48/146 (32%), Gaps = 32/146 (21%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH---TLLHEQEK 159
EC CH KF +K L H HTG K ++C C K Y ++ L H ++ E+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 160 VIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG 219
V C C +R +R H HT Y
Sbjct: 66 VFT----------------------------CSVCQETFRRRMELRLH-MVSHTGEMPYK 96
Query: 220 CDECGKMLKSRDSLNTHKKIQHEGKK 245
C C + + L +H H G
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 61.0 bits (149), Expect = 9e-12
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 273 GHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNK 331
G +G C C+K + LK+HN + H TG EK F+C C K +F K+ L +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHN-RKH---TG---EKPFECPKCGKCYFRKENLLE 53
Query: 332 HKNWAH---GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK--KLRGKLKEH 384
H+ ++ C VC + + L+ HM++HTGE Y C C + + L+ H
Sbjct: 54 HEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 385 M 385
M
Sbjct: 114 M 114
Score = 60.2 bits (147), Expect = 1e-11
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRA--HVGLKIS 100
CP C+K + ++ H R H C C K + K +H R +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS---- 63
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
+ F C+ C F + L H+ SHTG YKC C + + +K L++H
Sbjct: 64 -EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 58.7 bits (143), Expect = 6e-11
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDH- 270
+ C C K S+ L H + H G+K +EC CG Y K L +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEK-----PFECPKCGKCYFRKENLLEHE 55
Query: 271 --ISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKK 327
+ C +C + + L++H +H TG E +KC C ++F +KK
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSH---TG---EMPYKCSSCSQQFMQKK 108
Query: 328 KLNKHKNWAH 337
L H H
Sbjct: 109 DLQSHMIKLH 118
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 67.6 bits (166), Expect = 2e-13
Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 25/197 (12%)
Query: 206 KHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKY 261
+ + ++Y C +CG L H H G+K + C C +
Sbjct: 2 GE-KALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEK-----PFPCKEEGCEKGF 54
Query: 262 PNKYTLSDHISGHTGIPNHICK--ICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDL- 318
+ + L+ H HTG N C C+ + A++K H + I + C
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH-FNRF---HNIKICVYVCHFE 110
Query: 319 -CDKEFFEKKKLNKHKNWAHGDKFHLCK--VCGA--KIKGSLKQHMITHTGERKYCCHIC 373
C K F + +L H+ + C C + LK+H H G C
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Query: 374 GK--KLRGKLKEHMLNT 388
K +H+
Sbjct: 171 SFVGKTWTLYLKHVAEC 187
Score = 60.7 bits (148), Expect = 3e-11
Identities = 39/190 (20%), Positives = 61/190 (32%), Gaps = 42/190 (22%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
C + Q H H G K F C C F++ L+ H +HTG KN+
Sbjct: 20 CGAAYNKNWKLQAH-LCKHTG-----EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 134 KC--HVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVC 191
C CD ++ + +K H K+ C +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV----------CHFEN------------ 111
Query: 192 PKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVK 249
C + ++ ++ H + HT Y C C K L H+K+ H G
Sbjct: 112 --CGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP---C 164
Query: 250 YE-YECDYCG 258
+ C + G
Sbjct: 165 KKDDSCSFVG 174
Score = 57.6 bits (140), Expect = 4e-10
Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 39/173 (22%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECN--YCHAKFSNKSLLSDHISSHTGLKN- 132
C+K F + +H H G K+F C+ C +F+ K+ + H + +K
Sbjct: 50 CEKGFTSLHHLTRH-SLTHTG-----EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103
Query: 133 -YKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT 189
Y CH C KA+ LK H H Q+ + C +
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE------------CPHEG---------- 141
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHE 242
C++ + P +++H +VH D C + K+ H H+
Sbjct: 142 ----CDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 53.0 bits (128), Expect = 2e-08
Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 44/210 (20%)
Query: 123 HISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEW 180
+ K Y C C AY+ L+ H H EK C +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP------------CKEE-- 48
Query: 181 NDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKK 238
C + + + ++ +H HT + + CD C ++ ++ H
Sbjct: 49 ------------GCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 239 IQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDHISGHTGIPNHICK--ICNKGYACAAS 294
K+ V Y C + CG + L H HT + C C+K ++ +
Sbjct: 96 R-FHNIKICV---YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR 151
Query: 295 LKIHNIKTHLQFTGVPIEK-FKCDLCDKEF 323
LK H K H G P +K C K +
Sbjct: 152 LKRHE-KVH---AGYPCKKDDSCSFVGKTW 177
Score = 50.3 bits (121), Expect = 2e-07
Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 28/184 (15%)
Query: 194 CNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKVKYE 251
C Y ++ HL HT + + C E C K S L H H G+K
Sbjct: 20 CGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEK-----N 72
Query: 252 YECD--YCGAKYPNKYTLSDHISGHTGIPNH----ICKICNKGYACAASLKIHNIKTHLQ 305
+ CD C ++ K + H + I + C K + LK+H +H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSH-- 129
Query: 306 FTGVPIEK-FKC--DLCDKEFFEKKKLNKHKNWAHGDKF---HLCKVCGAKIKGSLKQHM 359
T + ++C + CDK F +L +H+ G C G LK
Sbjct: 130 -TQ---QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Query: 360 ITHT 363
H
Sbjct: 186 ECHQ 189
Score = 47.2 bits (113), Expect = 2e-06
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 47 CNKSYPGARNMRKHLRLVH--DKNSTTTCTM--CKKTFRNKATFQKHMQRAHVGLKISVS 102
C+ + NM+KH K C C K F+ + H Q +H
Sbjct: 80 CDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQ-----Q 132
Query: 103 KHFECN--YCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
+EC C +FS S L H H G K C H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 60.1 bits (147), Expect = 8e-12
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +C K F K + H R H G K ++C C ++ S L+ H+ H+ +
Sbjct: 11 CEVCGKCFSRKDKLKTH-MRCHTG-----VKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEK 159
+KC +C A L H H +
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 52.4 bits (127), Expect = 4e-09
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKH 332
H C++C K ++ LK H ++ H TG K +KC CD + LNKH
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-MRCH---TG---VKPYKCKTCDYAAADSSSLNKH 55
Query: 333 KNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
++ C++C + L H+ +HTG+
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 51.7 bits (125), Expect = 7e-09
Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 35/129 (27%)
Query: 126 SHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIK 185
S +KC VC K +S + LKTH H K K
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK----------------------- 38
Query: 186 RRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C C+ + ++ KH R+H+ R + C C ++ L H + H G
Sbjct: 39 -----CKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVHLRS-HTGDS 91
Query: 246 VKVKYEYEC 254
Sbjct: 92 -----GPSS 95
Score = 51.3 bits (124), Expect = 1e-08
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
+C C FS K L H+ HTG+K YKC CD A + +L H +H E+
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Score = 50.9 bits (123), Expect = 1e-08
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCG--AKIKGSLKQHMITHTGERKY 368
KC++C K F K KL H G K + CK C A SL +H+ H+ ER +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 369 CCHICGK 375
C IC
Sbjct: 66 KCQICPY 72
Score = 50.5 bits (122), Expect = 2e-08
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI 271
S + C+ CGK +D L TH + H G K Y+C C + +L+ H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVK-----PYKCKTCDYAAADSSSLNKHL 56
Query: 272 SGHTGIPNHICKICNKGYACAASLKIH 298
H+ C+IC ++ L +H
Sbjct: 57 RIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 47.8 bits (115), Expect = 2e-07
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
C C + + ++ H R HT V+ Y C C SLN H +I H ++
Sbjct: 11 CEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDER----- 63
Query: 251 EYECDYCGAKYPNKYTLSDHISGHTG 276
++C C N L+ H+ HTG
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 45.5 bits (109), Expect = 1e-06
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C C + ++ KH R H + F+C C N S L+ H+ SHTG
Sbjct: 39 CKTCDYAAADSSSLNKH-LRIHSD-----ERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Query: 133 YKC 135
Sbjct: 93 PSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 59.4 bits (145), Expect = 2e-11
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C C + F H +R H + + C+ CH F + L DH H+ K
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTHTD-----ERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEK 159
+KC C K + + L H LH Q
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTS 100
Score = 48.6 bits (117), Expect = 1e-07
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
R + +++ C CG+ +L H++ H ++ Y CD C +
Sbjct: 4 GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HTDER-----PYTCDICHKAFR 56
Query: 263 NKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
+ L DH H+ C+ C KG+ + +L +H
Sbjct: 57 RQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 48.6 bits (117), Expect = 1e-07
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 83 KATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAY 142
+ + K F C +C F+ L H +HT + Y C +C KA+
Sbjct: 2 SSGSSGG-RLPSKT-----KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
Query: 143 SCRKALKTHTLLHEQEK 159
+ L+ H +H +EK
Sbjct: 56 RRQDHLRDHRYIHSKEK 72
Score = 47.0 bits (113), Expect = 4e-07
Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 40/140 (28%)
Query: 232 SLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYAC 291
+ + + KK E+ C +CG + Y L H HT + C IC+K +
Sbjct: 4 GSSGGRLP-SKTKK-----EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57
Query: 292 AASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK 350
L+ H H + EK FKC C K F +
Sbjct: 58 QDHLRDHR-YIH---SK---EKPFKCQECGKGFCQS------------------------ 86
Query: 351 IKGSLKQHMITHTGERKYCC 370
+L H H
Sbjct: 87 --RTLAVHKTLHMQTSSPTA 104
Score = 46.3 bits (111), Expect = 8e-07
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
+K F C C + F + L H+ ++ + C +C + + L+ H H+ E+ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 369 CCHICGK 375
C CGK
Sbjct: 75 KCQECGK 81
Score = 45.9 bits (110), Expect = 9e-07
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
C C R + N+ H R HT R Y CD C K + +D L H+ I H +K
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEK----- 72
Query: 251 EYECDYCGAKYPNKYTLSDHISGHTG 276
++C CG + TL+ H + H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 44.0 bits (105), Expect = 4e-06
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
TC +C K FR + + H + H K F+C C F L+ H + H
Sbjct: 47 TCDICHKAFRRQDHLRDH-RYIHSK-----EKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
Query: 132 NYKC 135
+
Sbjct: 101 SPTA 104
Score = 37.8 bits (89), Expect = 7e-04
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 329 LNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
+ + + K +CK CG +L H THT ER Y C IC K
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHK 53
Score = 32.4 bits (75), Expect = 0.062
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 352 KGSLKQHMITHTGERKYCCHICGK 375
+ ++++ C CG+
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGR 25
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 56.7 bits (138), Expect = 9e-11
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +C K+F+ +T H H ++ + C YC +F KS + H HTG K
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSD-----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 133 YKCHVCDKAYSCRKALKTHTLLH 155
+KC VC KA+S L TH+ H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKH 80
Score = 47.4 bits (114), Expect = 1e-07
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
F+C C F S LS H+ H+ + Y C C K + + +K HT +H EK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Score = 46.6 bits (112), Expect = 4e-07
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGI 277
+ C CGK K +L+TH I H + Y C YCG ++ K + H HTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTR-----PYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 278 PNHICKICNKGYACAASLKIH 298
H C++C K ++ +++L H
Sbjct: 56 KPHKCQVCGKAFSQSSNLITH 76
Score = 45.9 bits (110), Expect = 6e-07
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
F C +C K F L+ H + + C+ CG K +K+H HTGE+ + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 372 ICGK 375
+CGK
Sbjct: 62 VCGK 65
Score = 44.3 bits (106), Expect = 2e-06
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
C C + ++ + H +H+ R Y C CGK + + H I H G+K
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEK----- 56
Query: 251 EYECDYCGAKYPNKYTLSDHISGHTG 276
++C CG + L H HTG
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 40.5 bits (96), Expect = 6e-05
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 29/107 (27%)
Query: 133 YKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCP 192
+ C +C K++ L TH L+H + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYP----------------------------CQ 33
Query: 193 KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
C + + +M+KH +HT + + C CGK +L TH +
Sbjct: 34 YCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 38.2 bits (90), Expect = 3e-04
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
CKIC K + +++L H H + + + C C K F +K + KH G+K
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIH---SD---TRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 341 FHLCKVCGA--KIKGSLKQHMITHTG 364
H C+VCG +L H HTG
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 37.0 bits (87), Expect = 7e-04
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG 129
C C K F K+ +KH H G K +C C FS S L H HTG
Sbjct: 32 CQYCGKRFHQKSDMKKH-TFIHTG-----EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 56.7 bits (138), Expect = 1e-10
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C + F + +H+ R H G K F+C C FS L+ HI +HTG K + C
Sbjct: 12 CDRRFSQSGSLTRHI-RIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 136 HVCDKAYSCRKALKTHTLLHEQEK 159
+C + ++ K HT +H ++K
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 52.5 bits (127), Expect = 4e-09
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 311 IEK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK--IKGSLKQHMITHTGE 365
+E+ + C + CD+ F + L +H G K C++C L H+ THTGE
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 366 RKYCCHICGKK--LRGKLKEHM 385
+ + C ICG+K + K H
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 46.7 bits (112), Expect = 4e-07
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHL 343
C++ ++ + SL H I+ H TG +K F+C +C + F L H G+K
Sbjct: 12 CDRRFSQSGSLTRH-IRIH---TG---QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 344 CKVCGAKI--KGSLKQHMITHTGER 366
C +CG K K+H H ++
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.0 bits (105), Expect = 3e-06
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 194 CNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYE 253
C+R + ++ +H R+HT + + C C + D L TH + H G+K +
Sbjct: 12 CDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFA 64
Query: 254 CDYCGAKYPNKYTLSDHISGHTG 276
CD CG K+ H H
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 41.3 bits (98), Expect = 3e-05
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 218 YGC--DECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
Y C + C + SL H +I H G+K ++C C + L+ HI HT
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 276 GIPNHICKICNKGYACAASLKIHNIKTH 303
G C IC + +A + K H K H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH-TKIH 85
Score = 40.1 bits (95), Expect = 7e-05
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 32/117 (27%)
Query: 131 KNYKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
+ Y C V CD+ +S +L H +H +K +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ-------------------------- 36
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C C R++ ++ H R HT + + CD CG+ D H KI H +K
Sbjct: 37 --CRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 38.6 bits (91), Expect = 2e-04
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 43 TCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
CP+ C++ + + ++ +H+R +H C +C + F H+ R H G
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG---- 59
Query: 101 VSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
K F C+ C KF+ H H K+
Sbjct: 60 -EKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 56.3 bits (137), Expect = 2e-10
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG-- 129
C +C K FR+ +H + +H G K + C C +F K +S H+ SH G
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSG-----EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 130 LKNYKCHVCDKAYSCRKALKTH 151
K Y C C K +S L H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGH 84
Score = 51.0 bits (123), Expect = 1e-08
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI 271
+ C+ CGK+ + LN HK H G+K Y C CG ++ K +S H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEK-----PYSCPVCGLRFKRKDRMSYHV 55
Query: 272 SGHTGIPN--HICKICNKGYACAASLKIHNIKTH 303
H G +IC+ C KG++ L H + H
Sbjct: 56 RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 50.6 bits (122), Expect = 2e-08
Identities = 29/121 (23%), Positives = 35/121 (28%), Gaps = 31/121 (25%)
Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
+G C +C K + L H L H EK
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS------------------------ 37
Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHT--SVRKYGCDECGKMLKSRDSLNTHKKIQHEGK 244
CP C ++ M H R H + Y C CGK D LN H K H G
Sbjct: 38 ----CPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Query: 245 K 245
Sbjct: 93 S 93
Score = 47.1 bits (113), Expect = 3e-07
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 26/111 (23%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
C C F + L+ H SH+G K Y C VC + + + H H+
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS---- 61
Query: 163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
K +I C C + + P ++ H+++VH+
Sbjct: 62 -VGKPYI---------------------CQSCGKGFSRPDHLNGHIKQVHS 90
Score = 45.2 bits (108), Expect = 1e-06
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERK- 367
C++C K F + LN+HK G+K + C VCG K K + H+ +H G
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 368 -YCCHICGK--KLRGKLKEHM 385
Y C CGK L H+
Sbjct: 65 PYICQSCGKGFSRPDHLNGHI 85
Score = 44.4 bits (106), Expect = 3e-06
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
C C + +R+ ++ +H + H+ + Y C CG K +D ++ H + H+G K
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGK--- 64
Query: 251 EYECDYCGAKYPNKYTLSDHISG-HTG 276
Y C CG + L+ HI H+G
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 41.3 bits (98), Expect = 3e-05
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 252 YECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPI 311
C+ CG + + Y L+ H H+G + C +C + + H +++H G
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH---DGSVG 63
Query: 312 EKFKCDLCDKEFFEKKKLNKHKNWAH 337
+ + C C K F LN H H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 336 AH-GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK--KLRGKLKEHM 385
G C++CG + L +H ++H+GE+ Y C +CG K + ++ H+
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 30.9 bits (71), Expect = 0.16
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTT--TCTMCKKTFRNKATFQKHMQRAHVGLK 98
+CP+C + M H+R HD + C C K F H+++ H G
Sbjct: 37 SCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 54.5 bits (132), Expect = 5e-10
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
C+ C KTFR K H + + V F C+ C F+ ++ ++ H + G
Sbjct: 17 ACSHCDKTFRQKQLLDMH-FKRYHD-PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 132 NYKCHVCDKAY 142
+ +
Sbjct: 75 GVEGENSGPSS 85
Score = 47.5 bits (114), Expect = 2e-07
Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 294 SLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHL----CKVCG 348
S +TH TG EK + C CDK F +K+ L+ H H F C CG
Sbjct: 2 SSGSSG-RTH---TG---EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG 54
Query: 349 AKI---KGSLKQHMITHTGERKYCCHICGK 375
K + ++ +H G G
Sbjct: 55 -KTFTRRNTMARHADNCAGPDGVEGENSGP 83
Score = 46.8 bits (112), Expect = 3e-07
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
+ R HT + Y C C K + + L+ H K + + C CG +
Sbjct: 2 SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVPA-AFVCSKCGKTFT 58
Query: 263 NKYTLSDHISGHTGIPNHICKICNK 287
+ T++ H G +
Sbjct: 59 RRNTMARHADNCAGPDGVEGENSGP 83
Score = 46.0 bits (110), Expect = 6e-07
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG----LKNYKCHVCDKAYSCRK 146
R H G K + C++C F K LL H + + C C K ++ R
Sbjct: 7 GRTHTG-----EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 147 ALKTHTLLHEQEK 159
+ H
Sbjct: 62 TMARHADNCAGPD 74
Score = 44.4 bits (106), Expect = 2e-06
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 25/106 (23%)
Query: 120 LSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDE 179
+HTG K Y C CDK + ++ L H + F
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---NFVPAAF----------- 48
Query: 180 WNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
VC KC + + M +H + G
Sbjct: 49 ----------VCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGP 83
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 353 GSLKQHMITHTGERKYCCHICGK--KLRGKLKEHM 385
GS THTGE+ Y C C K + + L H
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF 35
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 55.1 bits (134), Expect = 7e-10
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
C K+F +K+ +H H+GL+ + C C KF K L H+ HTG+K Y+C
Sbjct: 15 CGKSFTHKSQRDRH-MSMHLGLR-----PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 136 HVCDKAYSCRKAL--KTHT 152
++C K + R + +
Sbjct: 69 NICAKRFMWRDSFHRHVTS 87
Score = 52.8 bits (128), Expect = 4e-09
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C +C K F+ K H + H G K +ECN C +F + H+ + K+
Sbjct: 40 CGVCGKKFKMKHHLVGH-MKIHTG-----IKPYECNICAKRFMWRDSFHRHV--TSCTKS 91
Query: 133 YKCHVCDKAYSCRKALKT 150
Y+ ++ + +
Sbjct: 92 YEAAKAEQNTTEASGPSS 109
Score = 50.5 bits (122), Expect = 3e-08
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 34/134 (25%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
K + C C F++KS H+S H GL+ Y C VC K + + L H +H K +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 163 SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHL-RRVHTSVRKYGCD 221
C C + + R R V + + Y
Sbjct: 68 ----------------------------CNICAKRFMW----RDSFHRHVTSCTKSYEAA 95
Query: 222 ECGKMLKSRDSLNT 235
+ + ++
Sbjct: 96 KAEQNTTEASGPSS 109
Score = 49.7 bits (120), Expect = 5e-08
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
+ + Y C +CGK + + H + H G + Y C CG K+ K+ L
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSM-HLGLR-----PYGCGVCGKKFKMKHHLVG 55
Query: 270 HISGHTGIPNHICKICNKGYACAASL--KIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEK 326
H+ HTGI + C IC K + S + + K ++ ++ E
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRHVT--------SC---TKSYEAAKAEQNTTEA 104
Query: 327 KKLN 330
+
Sbjct: 105 SGPS 108
Score = 48.6 bits (117), Expect = 1e-07
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLS 268
+H +R YGC CGK K + L H KI H G K YEC+ C ++ + +
Sbjct: 29 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK-----PYECNICAKRFMWRDSFH 82
Query: 269 DHISGHTGIPNHICKICNKGYACAASL 295
H+ + ++ + A+
Sbjct: 83 RHV--TSCTKSYEAAKAEQNTTEASGP 107
Score = 46.7 bits (112), Expect = 6e-07
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
+K + C C K F K + ++H + G + + C VCG K+K L HM HTG + Y
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 369 CCHICGK 375
C+IC K
Sbjct: 67 ECNICAK 73
Score = 44.4 bits (106), Expect = 3e-06
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 272 SGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLN 330
SG +G + C+ C K + + H H G + + C +C K+F K L
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHM-SMH---LG---LRPYGCGVCGKKFKMKHHLV 54
Query: 331 KHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
H G K + C +C + S +H+ + + Y +
Sbjct: 55 GHMKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQ 99
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 53.7 bits (130), Expect = 3e-09
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 40 KTKTCPI--CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGL 97
+T CP C K + MRKHL + C C K F + ++H H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPR--VHVCAECGKAFVESSKLKRHQ-LVHTG- 59
Query: 98 KISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTL 153
K F+C + C +FS L H+ HTG + Y C C+K ++ LK+H L
Sbjct: 60 ----EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 154 LHEQEK 159
H + K
Sbjct: 116 THAKAK 121
Score = 50.6 bits (122), Expect = 3e-08
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 312 EK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGER 366
+ C C K F + + KH HG + H+C CG LK+H + HTGE+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 367 KYCCHI--CGK--KLRGKLKEHM 385
+ C CGK L L+ H+
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHV 84
Score = 48.3 bits (116), Expect = 3e-07
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
K C K + ++++ H + TH G + C C K F E KL +H+ G+K
Sbjct: 10 HKGCTKMFRDNSAMRKH-LHTH----G---PRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 341 FHLCKV--CGA--KIKGSLKQHMITHTGERKYCCHI--CGKKLR--GKLKEHM 385
C CG + +L+ H+ HTG+R Y C C KK LK H+
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 47.5 bits (114), Expect = 4e-07
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 47/158 (29%)
Query: 218 YGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
C C KM + ++ H H G +V + C CG + L H HT
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT-H-GPRV-----HVCAECGKAFVESSKLKRHQLVHT 58
Query: 276 GIPNHICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLN 330
G C C K ++ +L+ H ++ H TG ++ + C C+K+F +
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTH-VRIH---TG---DRPYVCPFDGCNKKFAQS---- 107
Query: 331 KHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKY 368
+LK H++TH +
Sbjct: 108 ----------------------TNLKSHILTHAKAKNN 123
Score = 41.3 bits (98), Expect = 5e-05
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
C + +R+ MRKHL H R + C ECGK L H+ + H G+K
Sbjct: 10 HKGCTKMFRDNSAMRKHLH-THGP-RVHVCAECGKAFVESSKLKRHQLV-HTGEK----- 61
Query: 251 EYECDY--CGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTH 303
++C + CG ++ + L H+ HTG ++C CNK +A + +LK H I TH
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTH 117
Score = 36.7 bits (86), Expect = 0.003
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 43 TCPICNKSYPGARNMRKHLRLVH--DKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
C C K++ + +++H VH +K T C K F + H+ R H G
Sbjct: 36 VCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTG---- 89
Query: 101 VSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYK 134
+ + C + C+ KF+ + L HI +H KN +
Sbjct: 90 -DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 53.7 bits (130), Expect = 3e-09
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 285 CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKF 341
CNK Y + L++H + H TG EK ++CD C++ F +L +H+ G K
Sbjct: 14 CNKRYFKLSHLQMH-SRKH---TG---EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 342 HLCKVCGAKI--KGSLKQHMITHTGERKYCCHI--CGKK--LRGKLKEHM 385
CK C K LK H THTGE+ + C C KK +L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 52.9 bits (128), Expect = 4e-09
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
C K + + Q H R H G K ++C++ C +FS L H HTG+K +
Sbjct: 14 CNKRYFKLSHLQMHS-RKHTG-----EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 134 KCHVCDKAYSCRKALKTHTLLHEQEK 159
+C C + +S LKTHT H EK
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEK 93
Score = 51.4 bits (124), Expect = 2e-08
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 45 PICNKSYPGARNMRKHLRLVH--DKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
P CNK Y +++ H R H +K C++ F ++H R H G
Sbjct: 12 PGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHTG-----V 64
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTH 151
K F+C C KFS L H +HTG K + C C K ++ L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 45.6 bits (109), Expect = 2e-06
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 192 PKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVK 249
P CN+ Y +++ H R HT + Y CD +C + D L H++ H G K
Sbjct: 12 PGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVK---- 65
Query: 250 YEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKI--CNKGYACAASLKIHNIKTH 303
++C C K+ L H HTG C+ C K +A + L H H
Sbjct: 66 -PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119
Score = 44.0 bits (105), Expect = 5e-06
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 312 EK-FKCD--LCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAK--IKGSLKQHMITHTG 364
++ F C C+K +F+ L H G+K + C C + LK+H HTG
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 365 ERKYCCHICGKK--LRGKLKEHM 385
+ + C C +K LK H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHT 86
Score = 41.7 bits (99), Expect = 4e-05
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 37/151 (24%)
Query: 128 TGLKNYKC--HVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIK 185
+ + + C C+K Y L+ H+ H EK + C +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ------------CDFKD------ 43
Query: 186 RRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C R + +++H +R HT V+ + C C + D L TH + H G+K
Sbjct: 44 --------CERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 93
Query: 246 VKVKYEYECDY--CGAKYPNKYTLSDHISGH 274
+ C + C K+ L H + H
Sbjct: 94 -----PFSCRWPSCQKKFARSDELVRHHNMH 119
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 51.7 bits (125), Expect = 5e-09
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
K ++C+ C A F K L+ H + HTG K Y+C++C ++ LKT
Sbjct: 9 SHMTHS-----DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 151 HTLLHEQEK 159
HT +H EK
Sbjct: 64 HTRIHSGEK 72
Score = 44.4 bits (106), Expect = 2e-06
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
+ S + Y CD C + + +L +HK + H G+K Y C+ CGA++ L
Sbjct: 10 HMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEK-----PYRCNICGAQFNRPANLKT 63
Query: 270 HISGHTG 276
H H+G
Sbjct: 64 HTRIHSG 70
Score = 40.9 bits (97), Expect = 3e-05
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
+K +KCD C F K L HK G+K + C +CGA +LK H H+GE+ Y
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 40.9 bits (97), Expect = 3e-05
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 329 LNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
+ H + H DK + C C A + KG+L H HTGE+ Y C+ICG
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGA 53
Score = 38.2 bits (90), Expect = 2e-04
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C C+ +FR K H + H G K + CN C A+F+ + L H H+G K
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTG-----EKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Query: 133 Y 133
Y
Sbjct: 74 Y 74
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 118 SLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
H K YKC C ++ + L +H +H EK
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK 44
Score = 35.9 bits (84), Expect = 0.002
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 232 SLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYAC 291
+ H + K Y+CD C A + K L+ H + HTG + C IC +
Sbjct: 4 HHHHHSHM-THSDK-----PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57
Query: 292 AASLKIH 298
A+LK H
Sbjct: 58 PANLKTH 64
Score = 32.8 bits (76), Expect = 0.020
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 354 SLKQHMITHTGERKYCCHICGK--KLRGKLKEHM 385
H ++ Y C C + +G L H
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 51.3 bits (124), Expect = 8e-09
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
C +C + F H+ R H G K F C+ C KF+ H
Sbjct: 5 QCRICMRNFSRSDHLTTHI-RTHTG-----EKPFACDICGRKFARSDERKRHRDIQHI-L 57
Query: 132 NYKCHVCDKAYSCRKALKTH 151
++ S L+
Sbjct: 58 PILEDKVEELLSKNYHLENE 77
Score = 45.6 bits (109), Expect = 9e-07
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
K F+C C FS L+ HI +HTG K + C +C + ++ K H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 45.2 bits (108), Expect = 1e-06
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
C+IC + ++ + L H I+TH TG EK F CD+C ++F + +H++
Sbjct: 6 CRICMRNFSRSDHLTTH-IRTH---TG---EKPFACDICGRKFARSDERKRHRD-IQHIL 57
Query: 341 FHLCKVCGAKI--KGSLKQHMI---THTGER 366
L + L+ + GER
Sbjct: 58 PILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 44.0 bits (105), Expect = 3e-06
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
C C R++ ++ H R HT + + CD CG+ D H+ IQH
Sbjct: 6 CRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP----- 58
Query: 251 EYECDYCGAKYPNKYTLSDHISG---HTG 276
D Y L + ++ G
Sbjct: 59 -ILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 44.0 bits (105), Expect = 3e-06
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 215 VRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGH 274
++ + C C + D L TH + H G+K + CD CG K+ H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFACDICGRKFARSDERKRHRDIQ 54
Query: 275 TGIPNHICKICNKGYACAASLKIHN--IKTH 303
+P + + + L+ +K
Sbjct: 55 HILP-ILEDKVEELLSKNYHLENEVARLKKL 84
Score = 43.3 bits (103), Expect = 6e-06
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAK--IKGSLKQHMITHTGERKYCCH 371
F+C +C + F L H G+K C +CG K K+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 372 ICGKKLR--GKLKEHM 385
+ L L+ +
Sbjct: 63 KVEELLSKNYHLENEV 78
Score = 39.4 bits (93), Expect = 1e-04
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 32/118 (27%)
Query: 130 LKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVT 189
+K ++C +C + +S L TH H EK
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA--------------------------- 33
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQ--HEGKK 245
C C R + ++H R + D+ ++L L G++
Sbjct: 34 -CDICGRKFARSDERKRH-RDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 50.9 bits (122), Expect = 9e-09
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 273 GHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNK 331
G +G C+IC ASL H + H F C+ C K F + +
Sbjct: 1 GSSGSSGLQCEICGFTCRQKASLNWH-QRKH---AETVAALRFPCEFCGKRFEKPDSVAA 56
Query: 332 HKNWAHGDKFHLCKVCGAKIKG 353
H++ +H + G
Sbjct: 57 HRSKSHPALLLAPQESSGPSSG 78
Score = 47.0 bits (112), Expect = 3e-07
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHT---GLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
+C C K+ L+ H H + C C K + ++ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 160 VIKSSKK 166
++ +
Sbjct: 66 LLAPQES 72
Score = 43.9 bits (104), Expect = 3e-06
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHT---GERKYCCHICGKKLRGK--LKEHM 385
G C++CG + K SL H H ++ C CGK+ + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 43.5 bits (103), Expect = 4e-06
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
C +C T R KA+ H R H + F C +C +F ++ H S
Sbjct: 9 QCEICGFTCRQKASLNWHQ-RKHAETV--AALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 132 NYKCHVCDK 140
Sbjct: 66 LLAPQESSG 74
Score = 42.8 bits (101), Expect = 7e-06
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSV---RKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C C R ++ H +R H ++ C+ CGK + DS+ H+ H
Sbjct: 10 CEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Score = 41.6 bits (98), Expect = 2e-05
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI 271
+ C+ CG + + SLN H++ E + C++CG ++ +++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL---RFPCEFCGKRFEKPDSVAAHR 58
Query: 272 SGHTGIPNHICK 283
S +
Sbjct: 59 SKSHPALLLAPQ 70
Score = 40.5 bits (95), Expect = 4e-05
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 25/99 (25%)
Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
+G +C +C + +L H H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP--------------------- 40
Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
C C + + P ++ H + H ++ + G
Sbjct: 41 ----CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGP 75
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTT---TCTMCKKTFRNKATFQKHMQRAHVGLK 98
C IC + ++ H R H + C C K F + H ++H L
Sbjct: 9 QCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Score = 32.0 bits (73), Expect = 0.050
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 362 HTGERKYCCHICGKKLRGK--LKEHM 385
+G C ICG R K L H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ 27
Score = 30.1 bits (68), Expect = 0.26
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTF 80
C C K + ++ H H +
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 50.2 bits (121), Expect = 1e-08
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 314 FKCDL--CDKEFFEKKKLNKHKNWAH-GDKFHLCK--VCGA--KIKGSLKQHMITHTGER 366
CD C + F ++ LN HK + H K C CG K LK+HM H+ R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 367 KYCCHICGK 375
Y C G
Sbjct: 68 DYICEFSGP 76
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
C + F N+ H + H+ K F C C F+ K L +H+ H+
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIH-----QKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 130 LKNYKCHVCDKAY 142
++Y C +
Sbjct: 66 TRDYICEFSGPSS 78
Score = 42.9 bits (102), Expect = 7e-06
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 212 HTSVRKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTL 267
+ CD CG++ +R LN HKK QH +K + C CG + K L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-----SFSCPEPACGKSFNFKKHL 56
Query: 268 SDHISGHTGIPNHICKICNKGY 289
+H+ H+ ++IC+
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
Score = 39.5 bits (93), Expect = 1e-04
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKV 248
P C R + N + + H + H + + C E CGK + L H K+ H +
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTR--- 67
Query: 249 KYEYECDYCG 258
+Y C++ G
Sbjct: 68 --DYICEFSG 75
Score = 39.1 bits (92), Expect = 1e-04
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 103 KHFECNY--CHAKFSNKSLLSDHI-SSHTGLKNYKC--HVCDKAYSCRKALKTHTLLHEQ 157
C++ C FSN+ L+ H H K++ C C K+++ +K LK H LH
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 158 EK 159
+
Sbjct: 66 TR 67
Score = 35.2 bits (82), Expect = 0.003
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 30/102 (29%)
Query: 127 HTGLKNYKCHV--CDKAYSCRKALKTHT-LLHEQEKVIKSSKKEFIIDTGDCTLDEWNDF 183
+G C C + +S R+ L H H +K C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS------------CPE------ 43
Query: 184 IKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
P C + + +++++H ++H+ R Y C+ G
Sbjct: 44 --------PACGKSFNFKKHLKEH-MKLHSDTRDYICEFSGP 76
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 49.8 bits (120), Expect = 2e-08
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
H G K + C C FS S+L H HTG K YKC C KA+S L
Sbjct: 6 SGIHSG-----EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 151 HTLLHEQEK 159
H +H
Sbjct: 61 HQRIHTSGP 69
Score = 42.8 bits (102), Expect = 5e-06
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLS 268
+H+ + YGC ECGK L H+++ H G+K Y+C CG + L
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEK-----PYKCLECGKAFSQNSGLI 59
Query: 269 DHISGHTG 276
+H HT
Sbjct: 60 NHQRIHTS 67
Score = 39.8 bits (94), Expect = 8e-05
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C C K F + +H QR H G K ++C C FS S L +H HT +
Sbjct: 17 CVECGKAFSRSSILVQH-QRVHTG-----EKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Query: 133 Y 133
Sbjct: 71 S 71
Score = 36.7 bits (86), Expect = 8e-04
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C +C + + + +H +RVHT + Y C ECGK L H++I H
Sbjct: 17 CVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP 69
Score = 35.5 bits (83), Expect = 0.002
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 120 LSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S H+G K Y C C KA+S L H +H EK
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK 41
Score = 35.1 bits (82), Expect = 0.003
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 329 LNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
+ G+K + C CG L QH HTGE+ Y C CGK
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50
Score = 35.1 bits (82), Expect = 0.003
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
EK + C C K F L +H+ G+K + C CG L H HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIK 162
+C+ C S+K+ L H H + +KC+ C L H +
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67
Query: 163 SS 164
SS
Sbjct: 68 SS 69
Score = 46.0 bits (110), Expect = 4e-07
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSD 269
+S C EC S+ +L H++I H + ++C+YC LS
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDR-----PFKCNYCSFDTKQPSNLSK 55
Query: 270 HISGHTG 276
H+ G
Sbjct: 56 HMKKFHG 62
Score = 41.3 bits (98), Expect = 2e-05
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C+ C + +KA + H R H + F+CNYC S LS H+ G +
Sbjct: 12 CSECSYSCSSKAALRIHE-RIHCT-----DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 133 YKC 135
Sbjct: 66 GPS 68
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 338 GDKFHLCKVCG--AKIKGSLKQHMITHTGERKYCCHICGK--KLRGKLKEHM 385
C C K +L+ H H +R + C+ C K L +HM
Sbjct: 6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 35.2 bits (82), Expect = 0.003
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 274 HTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKH 332
+ C C+ + A+L+IH + H ++ FKC+ C + + L+KH
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH-ERIH---CT---DRPFKCNYCSFDTKQPSNLSKH 56
Query: 333 KNWAHGDK 340
HGD
Sbjct: 57 MKKFHGDM 64
Score = 34.0 bits (79), Expect = 0.006
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C +C+ + +R H R+H + R + C+ C K +L+ H K G
Sbjct: 12 CSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDM 64
Score = 32.9 bits (76), Expect = 0.017
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS + KC C + S + AL+ H +H ++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR 36
Score = 26.3 bits (59), Expect = 4.0
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 361 THTGERKYCCHICGKKLRGK--LKEHM 385
+ + C C K L+ H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHE 29
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.6 bits (118), Expect = 4e-08
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 64 VHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS---KHFECNYCHAKFSNKSLL 120
+ + + C +TF H+ HVG + EC F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 121 SDHISSHTGLKNYKC 135
+HI HTG K+
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 40.7 bits (95), Expect = 6e-05
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 211 VHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYE---YECDYCGAKYPNKYTL 267
+ + C + + L TH ++H G + + EC G + KY L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 268 SDHISGHTGIPNHIC 282
+HI HTG +
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 33.8 bits (77), Expect = 0.015
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAH----GDKFHLCKVCGAKIKG-------SLKQHMITH 362
CD+ F +L H H H+C +G L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 363 TGERKYCC 370
TGE+
Sbjct: 86 TGEKSGPS 93
Score = 33.0 bits (75), Expect = 0.029
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKY--------GCDECGKMLKSRDSLNTH 236
C+R + + H+ H + C GK K++ L H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 49.0 bits (118), Expect = 4e-08
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKT 150
+ + ++C+ C FS+ S LS H +HTG K YKC C KA+ R L
Sbjct: 10 EWQQRE-----RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 151 HTLLHEQEK 159
H +H
Sbjct: 65 HHRVHTGSG 73
Score = 43.6 bits (104), Expect = 3e-06
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
+ + R+Y CDECGK L+ H++ H G+K Y+CD CG +
Sbjct: 5 SSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEK-----PYKCDECGKAFI 57
Query: 263 NKYTLSDHISGHTG 276
+ L H HTG
Sbjct: 58 QRSHLIGHHRVHTG 71
Score = 39.0 bits (92), Expect = 2e-04
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKN 132
C C K+F + + KH +R H G K ++C+ C F +S L H HTG
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTG-----EKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 133 YK 134
Sbjct: 75 SS 76
Score = 34.7 bits (81), Expect = 0.005
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 329 LNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCHICGK 375
+ + + + C CG L +H THTGE+ Y C CGK
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
Score = 34.3 bits (80), Expect = 0.007
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 352 KGSLKQHMITHTGERKYCCHICGK 375
GS + R+Y C CGK
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGK 26
Score = 32.8 bits (76), Expect = 0.019
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
+ +KCD C K F L+KH+ G+K + C CG + L H HTG
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 48.7 bits (117), Expect = 5e-08
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 85 TFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTG--LKNYKCHVCDKAY 142
+ R H G K +EC CHA+F+ + HI + + C CD
Sbjct: 2 SSGSSG-RTHSG-----EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
Query: 143 SCRKALKTH 151
+ + L H
Sbjct: 56 ARKSDLGVH 64
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 203 NMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYP 262
+ R H+ + Y C C ++ H + V + C +C
Sbjct: 2 SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENVAK---FHCPHCDTVIA 56
Query: 263 NKYTLSDHI-SGHTG 276
K L H+ H+
Sbjct: 57 RKSDLGVHLRKQHSY 71
Score = 43.7 bits (104), Expect = 3e-06
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 30/96 (31%)
Query: 120 LSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH--EQEKVIKSSKKEFIIDTGDCTL 177
+H+G K Y+C++C ++ +K H L E
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH--------------- 47
Query: 178 DEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
CP C+ ++ HLR+ H+
Sbjct: 48 -------------CPHCDTVIARKSDLGVHLRKQHS 70
Score = 42.5 bits (101), Expect = 9e-06
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 353 GSLKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
GS TH+GE+ Y C+IC + G +K H+
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 266 TLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE 325
+ H+G + C IC+ + + ++K+H I + KF C CD
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH-ILQK---HTENVAKFHCPHCDTVIAR 57
Query: 326 KKKLNKHKNWAH-GDK 340
K L H H
Sbjct: 58 KSDLGVHLRKQHSYSG 73
Score = 40.6 bits (96), Expect = 4e-05
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 338 GDKFHLCKVCGAK--IKGSLKQHMITHTGE--RKYCCHICGKKL--RGKLKEHM 385
G+K + C +C A+ G++K H++ E K+ C C + + L H+
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHT--SVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
C C+ + M+ H +V K+ C C ++ + L H + QH
Sbjct: 18 CYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTT-TCTMCKKTFRNKATFQKHMQRAHVGLK 98
C IC+ + + M+ H+ H +N C C K+ H+++ H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 47.9 bits (115), Expect = 7e-08
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 90 MQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDH--ISSHTGLKNYKCHVCDKAYSCRKA 147
M+ G + C C +++ S H S +K Y C C K ++ +
Sbjct: 1 MEFTKEG-----EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDN 55
Query: 148 LKTHTLLHEQ 157
+ H + +
Sbjct: 56 MTAHVKIIHK 65
Score = 42.5 bits (101), Expect = 6e-06
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 191 CPKCNRDYRNPRNMRKHLR-RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHE 242
C C+R Y + N +H +V+ Y C C K +D++ H KI H+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 208 LRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI-QHEGKKVKVKYEYECDYCGAKYPNKYT 266
+ Y C C ++ + H KV Y C +C ++ K
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-----YPCPFCFKEFTRKDN 55
Query: 267 LSDHISGHTGI 277
++ H+ I
Sbjct: 56 MTAHVKIIHKI 66
Score = 38.3 bits (90), Expect = 2e-04
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 72 TCTMCKKTFRNKATFQKHMQ-RAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGL 130
C +C + + + + F +H K + C +C +F+ K ++ H+ +
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRN-----VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMIT--HTGERKYCCHICGKKL--RGKLKEHM 385
G+ + CKVC + +H +T + Y C C K+ + + H+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 32.1 bits (74), Expect = 0.027
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 241 HEGKKVKVKYEYECDYCGAKYPNKYTLSDH--ISGHTGIPNHICKICNKGYACAASLKIH 298
EG+ Y C C Y + H S + + C C K + ++ H
Sbjct: 5 KEGEHT-----YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Query: 299 NIKTH 303
+K
Sbjct: 60 -VKII 63
Score = 29.4 bits (67), Expect = 0.25
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTT-TCTMCKKTFRNKATFQKHMQRAH 94
C +C++ Y N +H H +N C C K F K H++ H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 29.4 bits (67), Expect = 0.32
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 361 THTGERKYCCHICGK--KLRGKLKEHM 385
T GE Y C +C + H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHY 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 48.8 bits (117), Expect = 9e-08
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNY 133
C K + + + H+ R H G K ++C + C +F+ L+ H HTG K +
Sbjct: 23 CTKVYTKSSHLKAHL-RTHTG-----EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 134 KCHVCDKAYSCRKALKTHTLLHE 156
+C VC++++S L H H+
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 42.2 bits (100), Expect = 2e-05
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 319 CDKEFFEKKKLNKHKNWAHGDKFHLC--KVCGAKIKGS--LKQHMITHTGERKYCCHICG 374
C K + + L H G+K + C + C + S L +H HTG + + C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 375 KKL--RGKLKEHM 385
+ L HM
Sbjct: 83 RSFSRSDHLALHM 95
Score = 41.1 bits (97), Expect = 5e-05
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 280 HICKI--CNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLNKHKN 334
H C C K Y ++ LK H ++TH TG EK +KC CD F +L +H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAH-LRTH---TG---EKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 335 WAHGDKFHLCKVCGAKI--KGSLKQHMITHT 363
G K C VC L HM H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.1 bits (97), Expect = 5e-05
Identities = 24/128 (18%), Positives = 35/128 (27%), Gaps = 31/128 (24%)
Query: 112 AKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIID 171
+ + H C K Y+ LK H H EK K
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYK--------- 47
Query: 172 TGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRD 231
CT + C+ + + +H R HT + + C C + D
Sbjct: 48 ---CTWEG--------------CDWRFARSDELTRH-YRKHTGAKPFQCGVCNRSFSRSD 89
Query: 232 SLNTHKKI 239
L H K
Sbjct: 90 HLALHMKR 97
Score = 39.5 bits (93), Expect = 2e-04
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 181 NDFIKRRVTVCPK--CNRDYRNPRNMRKHLRRVHTSVRKYGC--DECGKMLKSRDSLNTH 236
D KRR+ C C + Y +++ HLR HT + Y C + C D L H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 237 KKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
+ H G K ++C C + L+ H+ H
Sbjct: 67 YRK-HTGAK-----PFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 35.3 bits (82), Expect = 0.005
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 216 RKYGCD--ECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDHI 271
R + CD C K+ L H + H G+K Y+C + C ++ L+ H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEK-----PYKCTWEGCDWRFARSDELTRHY 67
Query: 272 SGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
HTG C +CN+ ++ + L +H +K H
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALH-MKRH 98
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 47.5 bits (114), Expect = 2e-07
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
C KT+ + + H R H G K + C++ C KF+ L+ H HTG
Sbjct: 9 DYAGCGKTYTKSSHLKAH-LRTHTG-----EKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 130 LKNYKCHVCDKAYSCRKALKTHTLLH 155
+ ++C CD+A+S L H H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 42.1 bits (100), Expect = 1e-05
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAKIKGS--LKQHMITHTGERKY 368
C K + + L H G+K + C CG K S L +H HTG R +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 369 CCHICGKK 376
C C +
Sbjct: 67 QCQKCDRA 74
Score = 41.4 bits (98), Expect = 3e-05
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSD 269
T+ CGK L H + H G+K Y CD+ CG K+ L+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEK-----PYHCDWDGCGWKFARSDELTR 55
Query: 270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTHL 304
H HTG C+ C++ ++ + L +H +K H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALH-MKRHF 89
Score = 39.4 bits (93), Expect = 1e-04
Identities = 24/113 (21%), Positives = 31/113 (27%), Gaps = 27/113 (23%)
Query: 127 HTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKR 186
T C K Y+ LK H H EK C D
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH------------CDWDG------- 42
Query: 187 RVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
C + + +H R HT R + C +C + D L H K
Sbjct: 43 -------CGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEK 159
+ C ++ S L H+ +HTG K Y C C ++ L H H +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 46.7 bits (112), Expect = 2e-07
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH 151
+ F C C F+ + L H SHT K Y C +C++A++ R L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 36.3 bits (85), Expect = 9e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 342 HLCKVCGAKI---KGSLKQHMITHTGERKYCCHICGK 375
+C+VC + + LK+H +HT E+ Y C +C +
Sbjct: 3 FVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNR 38
Score = 33.6 bits (78), Expect = 0.008
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEG 243
VC C R + ++++H R HT+ + Y C C + RD L H + H G
Sbjct: 4 VCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.3 bits (72), Expect = 0.052
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 218 YGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISG-HTG 276
+ C+ C + ++ L H + H +K Y C C + + L H H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEK-----PYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.9 bits (71), Expect = 0.080
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 252 YECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
+ C+ C + + L H HT + C +CN+ + L H K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 28.6 bits (65), Expect = 0.42
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEFFEKKKLNKHK 333
+C++C + +A LK H ++H T EK + C LC++ F + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSH---TN---EKPYPCGLCNRAFTRRDLLIRHA 50
Score = 26.7 bits (60), Expect = 2.2
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVG 96
C +C +++ ++++H R H C +C + F + +H Q+ H G
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 25.5 bits (57), Expect = 6.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
+++ C VC +A++ ++ LK H H EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 48.2 bits (114), Expect = 2e-07
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLS 268
+ T K+ C +C + L H + + P K +L
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD-DNHETDNNNPKRWSKPRKRSLL 69
Query: 269 DHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
+ C C + L +H IKT
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 46.3 bits (109), Expect = 1e-06
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 4/111 (3%)
Query: 56 NMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFS 115
+ + + + S C C + HM + + N
Sbjct: 6 SGKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETG-HYRDDNHETDNNNPKRWSKP 63
Query: 116 NKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTL--LHEQEKVIKSS 164
K L + K KC C ++ + L H + H Q+ SS
Sbjct: 64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 42.4 bits (99), Expect = 2e-05
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 7/104 (6%)
Query: 229 SRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKG 288
S S + I G + C C A Y L+ H++ TG +
Sbjct: 3 SGSSGKLYGSI-FTGASK-----FRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNN 55
Query: 289 YACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKH 332
S ++ + KC C F + L+ H
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 41.7 bits (97), Expect = 4e-05
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 265 YTLSDHISGHTGIPNHICKICNKGYACAASLKIH-NIKTHLQFTGVPIEKFKCDLCDKEF 323
+ + S TG CK C+ Y L +H N H + E +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDD--NHETDNNNPKRWSK 62
Query: 324 FEKKKLNKHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHT 363
K+ L + + K C CG + L HMI
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 36.7 bits (84), Expect = 0.002
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
C C+ +Y + H+ + + + + + K
Sbjct: 21 RCKDCSAAYDTLVELTVHMN--ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHT 128
K +C YC F + LS H+
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 32.0 bits (72), Expect = 0.087
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 115 SNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTH-----TLLHEQEKVIKSSKKEFI 169
S+ S + S TG ++C C AY L H + + ++ K +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 170 IDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVH 212
L+ ++V C C + + +++ H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 31.7 bits (71), Expect = 0.11
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 354 SLKQHMITHTGERKYCCHICGKKLR--GKLKEHMLNT 388
S K + TG K+ C C +L HM T
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET 42
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 44.5 bits (106), Expect = 2e-06
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTG 129
C K F+ + H Q +H +EC + C +FS S L H H G
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSHTQQLP-----YECPHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 130 LKNYKCHVCDKAYSCRKALKTH 151
K C H
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKH 80
Score = 37.2 bits (87), Expect = 7e-04
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 29/111 (26%)
Query: 133 YKCHV--CDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTV 190
Y CH C KA+ LK H H Q+ + C +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE------------CPHEG----------- 38
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
C++ + P +++H +VH D C + K+ H H
Sbjct: 39 ---CDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.7 bits (83), Expect = 0.002
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 220 CDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDY--CGAKYPNKYTLSDHISGHTGI 277
+ CGK K + L H+ H + YEC + C ++ L H H G
Sbjct: 6 FENCGKAFKKHNQLKVHQFS-HTQQL-----PYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 278 PNHICKICNKGYACAASLKIHNIKTH 303
P C+ H + H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.3 bits (82), Expect = 0.003
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 252 YECDY--CGAKYPNKYTLSDHISGHTGIPNHICK--ICNKGYACAASLKIHNIKTHLQFT 307
Y C + CG + L H HT + C C+K ++ + LK H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH---A 57
Query: 308 GVPIEKFKCDLCDKEFFEKKKLNKHKNWAH 337
G P K D C KH H
Sbjct: 58 GYP--CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 34.9 bits (81), Expect = 0.005
Identities = 23/112 (20%), Positives = 33/112 (29%), Gaps = 32/112 (28%)
Query: 105 FECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEKV 160
+ C++ C F + L H SHT Y+C CDK +S LK H +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 161 IKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVH 212
K C+ + KH+ H
Sbjct: 62 KK----------------------------DDSCSFVGKTWTLYLKHVAECH 85
Score = 33.7 bits (78), Expect = 0.012
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKKVKV 248
C + ++ ++ H HT Y C C K L H+K+ H G K
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKK 63
Query: 249 KYEYECDYCG 258
+ C + G
Sbjct: 64 --DDSCSFVG 71
Score = 32.6 bits (75), Expect = 0.035
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 314 FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKV--CGAK--IKGSLKQHMITHTGERK 367
+ C C K F + +L H+ + C C + + LK+H H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 368 YCCHICGK 375
C
Sbjct: 62 KKDDSCSF 69
Score = 28.4 bits (64), Expect = 0.90
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCD--LCDKEFFEKKKLNKHKNWAHG 338
+ C K + LK+H +H T + ++C CDK F +L +H+ G
Sbjct: 6 FENCGKAFKKHNQLKVH-QFSH---TQ---QLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 339 DKF---HLCKVCGAKIKGSLKQHMITH 362
C G LK H
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 26.0 bits (58), Expect = 7.1
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 47 CNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAH 94
C+K + +++H + VH C + + KH+ H
Sbjct: 39 CDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 41.9 bits (97), Expect = 3e-05
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 178 DEWNDFIKRRVTV-CPKCNR-DYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNT 235
++W I R CP CN + ++KH+ C C K KS+ LN
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 236 HKKIQHEGKKV 246
H +H K
Sbjct: 73 HTMAEHSAKPS 83
Score = 40.7 bits (94), Expect = 7e-05
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 31 DKW-RALIKNKTKTCPICNK-SYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQK 88
++W RA+ + CP CN + ++KH+ + C C+K F++KA
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 89 HMQRAHVGLKISVSK 103
H H
Sbjct: 73 HTMAEHSAKPSDAEA 87
Score = 30.7 bits (68), Expect = 0.24
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 297 IHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDK 340
+ +K H++ + KC C K+F K LN H H K
Sbjct: 38 LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 28.4 bits (62), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 344 CKVCGAKIKGSLKQHM-ITHTGERKYCCHICGKKLRGK--LKEHML 386
C V K LK+HM + + C C K+ + K L H +
Sbjct: 30 CNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 27.2 bits (59), Expect = 4.0
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 97 LKISVSKHFECNYCHAKF--SNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLL 154
I C C+ + L KC C K + + L HT+
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 155 HEQEKVIKSSKKE 167
K + E
Sbjct: 77 EHSAKPSDAEASE 89
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G K +KC CD +S +L+ H +H EK
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEK 39
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ +G K ++C C FS S L H + H G K
Sbjct: 4 GSSGMG-----EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.042
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + C EC SL H+ + H G+K
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEK 39
Score = 27.1 bits (61), Expect = 1.2
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 358 HMITHTGERKYCCHICGK 375
+ GE+ + C C
Sbjct: 3 SGSSGMGEKTWKCRECDM 20
Score = 24.4 bits (54), Expect = 9.7
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 27/60 (45%)
Query: 312 EK-FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCC 370
EK +KC CD F + SL+ H H GE+
Sbjct: 10 EKTWKCRECDMCFSQ--------------------------ASSLRLHQNVHVGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G+ YKC C+K++S + L H +H +EK
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G ++C+ C FS K L H HT K
Sbjct: 4 GSSGAG-----VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.7 bits (73), Expect = 0.030
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
V Y C +C K + L H+++ H +K
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREK 39
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 358 HMITHTGERKYCCHICGK 375
+ G Y C C K
Sbjct: 3 SGSSGAGVNPYKCSQCEK 20
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G + C C K L H HT E+
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 24.4 bits (54), Expect = 9.8
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C+ C+K+F K H QR H K +
Sbjct: 15 CSQCEKSFSGKLRLLVH-QRMHTR-----EKPSGPS 44
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 39.7 bits (92), Expect = 5e-05
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
+ C C + S+L HI +HT ++ Y C C+ ++ + L H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.0 bits (85), Expect = 5e-04
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 217 KYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTG 276
KY C+ECG K L H + H + Y C YC + K L+ H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVR-----PYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 34.3 bits (78), Expect = 0.005
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 313 KFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCG--AKIKGSLKQHMITHTGERK 367
K+ C+ C + L KH + + C C K KG+L +HM + +K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 33.5 bits (76), Expect = 0.008
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+C +C + P ++KH+R HT VR Y C C K++ +L H K + KK
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 33.2 bits (75), Expect = 0.013
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 252 YECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIH 298
Y C+ CG + L HI HT + + C CN + +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.1 bits (67), Expect = 0.14
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 344 CKVCG--AKIKGSLKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
C+ CG K LK+H+ THT R Y C C +G L +HM
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 29.7 bits (66), Expect = 0.22
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
C C + + +KH+ R H + + C YC+ F K L+ H+ S K
Sbjct: 3 ICEECGIRXKKPSMLKKHI-RTHTD-----VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 27.4 bits (60), Expect = 1.2
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLK 98
C C ++KH+R H CT C +F+ K KHM ++ K
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAHSK 56
Score = 26.6 bits (58), Expect = 2.8
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 280 HICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGD 339
+IC+ C + LK H I+TH + + C C+ F K L KH
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTH-----TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Query: 340 K 340
K
Sbjct: 56 K 56
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 40.0 bits (94), Expect = 6e-05
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 103 KHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
+ + C C +FS L+ HI HTG K ++C +C + +S L TH H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 355 LKQHMITHTGERKYCCHICGKKL--RGKLKEHM 385
L +H+ HTG++ + C IC + L H+
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 31.5 bits (72), Expect = 0.063
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 192 PKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKI 239
C+R + + +H+R HT + + C C + D L TH +
Sbjct: 25 ESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 30.0 bits (68), Expect = 0.23
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 296 KIHNIKTHLQFTGVPIEK-FKCDL--CDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIK 352
++N+ ++ + + C + CD+ F +L +H G K C++C
Sbjct: 5 PMNNLLNYVV-PK---MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 353 GS--LKQHMITHT 363
S L H+ THT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 27.7 bits (62), Expect = 1.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHT 128
C + F +H+ R H G K F+C C FS L+ HI +HT
Sbjct: 27 CDRRFSRSDELTRHI-RIHTGQK-----PFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 27.3 bits (61), Expect = 1.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 252 YECDY--CGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
Y C C ++ L+ HI HTG C+IC + ++ + L H I+TH
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTH 72
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.7 bits (91), Expect = 9e-05
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S G K YKC C + L+ H L+H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 33.7 bits (78), Expect = 0.005
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 358 HMITHTGERKYCCHICGKKL--RGKLKEHM 385
+ GE+ Y C CG + L+ H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 30.6 bits (70), Expect = 0.058
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKY 368
G+K + C+ CGA+ L+ H++ HTG
Sbjct: 8 GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 30.6 bits (70), Expect = 0.069
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ Y C+ CG L H I H G
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSG 38
Score = 27.9 bits (63), Expect = 0.58
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNY 133
K ++C C A+F + L H+ HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC C K + CR+ L TH ++H EK
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C+ECGK R L TH + H G+K
Sbjct: 4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEK 39
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C C F + L H HTG K
Sbjct: 4 GSSGTG-----EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYKCEECGK 20
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C+ CG + L H + HTGE+
Sbjct: 9 GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS + K+++CH C + ++ + L H +H EK
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+S + + C ECG+ + LN H++I H G+K
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEK 39
Score = 30.6 bits (70), Expect = 0.070
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
K +C+ C F+ KS L+ H HTG K
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.31
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 357 QHMITHTGERKYCCHICGK--KLRGKLKEH 384
+ + + + CH CG+ L+ L +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 27.5 bits (62), Expect = 0.97
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
K H C CG +K L QH HTGE+
Sbjct: 9 STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 40.3 bits (93), Expect = 2e-04
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVG 96
CP+C + + ++++H+R T C +CKK F + + H+ + H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 39.1 bits (90), Expect = 4e-04
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 117 KSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFI----IDT 172
S ++S+H G+ HV + + + H L EQ+++I++ K I +
Sbjct: 7 DSGSKKYLSNHKGIF---IHVTLE-----ELKRYHQLTPEQKRLIRAIVKTLIHNPQLLD 58
Query: 173 GDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDS 232
L VCP C + + ++++H+R C C K S DS
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTSTDS 115
Query: 233 LNTHKKIQHEG 243
H +H
Sbjct: 116 ALDHVCKKHNI 126
Score = 35.3 bits (80), Expect = 0.009
Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 30/107 (28%)
Query: 110 CHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFI 169
+ + ++S + + + + C +C +S +LK H E K
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK---------- 101
Query: 170 IDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVR 216
VCP C +++ + + H+ + H
Sbjct: 102 --------------------VCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 30.7 bits (68), Expect = 0.37
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSH 127
C +C F + + ++H++ C C +F++ DH+
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTE--------HTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 30.3 bits (67), Expect = 0.41
Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 5/124 (4%)
Query: 28 ITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQ 87
+T + K R H +L ++ + + +
Sbjct: 1 MTESDVDSGSKKYLSNHKGIFIHVTLEELKRYH-QLTPEQKRLIRAIVKTLIHNPQLLDE 59
Query: 88 KHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKA 147
+ K F C C FS+ L HI C VC K ++ +
Sbjct: 60 SSYLYRLLASK--AISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDS 115
Query: 148 LKTH 151
H
Sbjct: 116 ALDH 119
Score = 28.4 bits (62), Expect = 2.0
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 269 DHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKK 328
+ I +C +C ++ + SLK H T C +C KEF
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--------HTKVCPVCKKEFTSTDS 115
Query: 329 LNKHKNWAHG 338
H H
Sbjct: 116 ALDHVCKKHN 125
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S G K Y C +C + + LK+H +H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 358 HMITHTGERKYCCHICGKKLR--GKLKEHM 385
+ GE+ Y C ICG + R LK H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKY 368
G+K + C++CG + +LK H+ HTG
Sbjct: 8 GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.12
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ Y C+ CG + +L +H +I H G
Sbjct: 4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSG 38
Score = 29.0 bits (66), Expect = 0.21
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNY 133
K + C C +F + L H+ HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 252 YECDYCGAKYPNKYTLSDHISGHTG 276
Y C+ CG ++ + TL H+ HTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 26.3 bits (59), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLK 98
C +C FR+ T + H+ R H G
Sbjct: 13 PCEICGTRFRHLQTLKSHL-RIHTGSG 38
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K ++C C +S +L H HE+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 29.9 bits (68), Expect = 0.11
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + + C ECG SL H + HE
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTD 39
Score = 29.9 bits (68), Expect = 0.13
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 357 QHMITHTGERKYCCHICGK--KLRGKLKEHM 385
+ TGE+ + C CG L +H+
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 29.5 bits (67), Expect = 0.17
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K CK CG SL +H+ +H
Sbjct: 9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 28.7 bits (65), Expect = 0.36
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
K F+C C FS L H+ SH
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 25.6 bits (57), Expect = 4.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTH 303
S TG CK C ++ + SL H +++H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G +EC+ C FS K L H +H G K
Sbjct: 4 GSSGTG-----ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG Y+CH C KA+S + L +H H EK
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 32.5 bits (75), Expect = 0.016
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T Y C ECGK + L +H++ H G+K
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEK-----PSGP 43
Score = 30.2 bits (69), Expect = 0.097
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE Y CH CGK
Sbjct: 2 SSGSSGTGENPYECHECGK 20
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+ + C CG K L H TH GE+
Sbjct: 9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.0 bits (90), Expect = 2e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 236 HKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHI-SGHTGI---PNHICKICNKGYAC 291
H H + KV+ YEC YC + P+ + H+ S H + +++C CN
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 292 AASLKIHNIKTH 303
+L HN+K H
Sbjct: 63 YDALSEHNLKYH 74
Score = 38.2 bits (88), Expect = 5e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 54 ARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAK 113
A + H + C C + F H+ H + ++ S + C C+
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS--YVCVECNFL 59
Query: 114 FSNKSLLSDHIS-SHTGLKNYKCHV 137
LS+H H G +N+K +
Sbjct: 60 TKRYDALSEHNLKYHPGEENFKLTM 84
Score = 37.1 bits (85), Expect = 0.002
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRK---YGCDECGKMLKSRDSLNTHKKIQHEG 243
C C + H+ H +V Y C EC + K D+L+ H H G
Sbjct: 21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 30.5 bits (68), Expect = 0.28
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 40 KTKTCPICNKSYPGARNMRKHLRLVH---DKNSTTTCTMCKKTFRNKATFQKHMQRAHVG 96
C C P H+ H NS+ C C + +H + H G
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 27.4 bits (60), Expect = 2.7
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
Query: 202 RNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKY 261
+ H ++ Y C C + H +H V + Y C C
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN--VVLNSSYVCVECNFLT 60
Query: 262 PNKYTLSDHISG-HTGIPNHICKI 284
LS+H H G N +
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLTM 84
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISS-HTGLKNYKCHVCDKAYS 143
SV K + C C FS L+ HI HT + +KC V S
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 37.6 bits (88), Expect = 3e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGK 225
C C + + P ++ H+++VHTS R + C
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCG 258
+ + Y C CGK D LN H K H ++ ++C
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER-----PHKCQVWV 48
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHM-ITHTGERKYCCHICGK 375
K ++C+ CG L H+ HT ER + C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 31.8 bits (73), Expect = 0.033
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTH 151
SS + K Y C C K +S L H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
Score = 31.4 bits (72), Expect = 0.036
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEK-FKCDLCDKEF 323
S + +IC+ C KG++ L H + H T E+ KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH---TS---ERPHKCQVWVSGP 51
Score = 31.4 bits (72), Expect = 0.047
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSN 116
C C K F H+++ H + +C + S+
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTS-----ERPHKCQVWVSGPSS 53
Score = 25.6 bits (57), Expect = 5.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 361 THTGERKYCCHICGK--KLRGKLKEHM 385
+ + + Y C CGK L H+
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHI 32
Score = 25.2 bits (56), Expect = 6.0
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 252 YECDYCGAKYPNKYTLSDHISG-HTGIPNHICKICNKGYACA 292
Y C CG + L+ HI HT H C++ G +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y C+VC KA+ L H +H QE
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + CN C F + L+ H+ HT
Sbjct: 4 GSSGTG-----EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECD 255
T + Y C+ CGK LN H ++ H +
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQET-----LSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C++CGK
Sbjct: 2 SSGSSGTGEKPYSCNVCGK 20
Score = 27.9 bits (63), Expect = 0.69
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C VCG + L QH+ HT E
Sbjct: 9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G K Y+C C K++S L H + H +EK
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C+ C FS L+ H +HT K
Sbjct: 4 GSSGEG-----EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ Y C ECGK L H H +K
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREK 39
Score = 29.4 bits (67), Expect = 0.19
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
+ G+K + C CG L QH ITHT E+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 28.3 bits (64), Expect = 0.48
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ GE+ Y C CGK
Sbjct: 2 SSGSSGEGEKPYQCSECGK 20
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G K YKC VC K +S L+TH +H EK
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ Y CD CGK L TH+++ H G+K
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEK 39
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ +G K ++C+ C +FS S L H HTG K
Sbjct: 4 GSSGMG-----EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.30
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ GE+ Y C +CGK
Sbjct: 3 SGSSGMGEKCYKCDVCGK 20
Score = 26.7 bits (60), Expect = 1.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C VCG + L+ H HTGE+
Sbjct: 9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K +KC C K +S R AL H LH EK
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+C C FS +S L+ H HTG K
Sbjct: 4 GSSGTG-----EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + + C ECGK R +LN H K+ H G+K
Sbjct: 4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEK 39
Score = 27.5 bits (62), Expect = 0.82
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ + C CGK
Sbjct: 2 SSGSSGTGEKPFKCVECGK 20
Score = 25.9 bits (58), Expect = 2.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K C CG + +L H HTGE+
Sbjct: 9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K Y+C C K + L H +H E+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
K +EC C F L+ H HTG ++
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 31.0 bits (71), Expect = 0.047
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + Y C EC K LN HK++ H G++
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGER 39
Score = 28.3 bits (64), Expect = 0.42
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +G++ Y C C K
Sbjct: 3 SGSSGSGKKPYECKECRK 20
Score = 27.9 bits (63), Expect = 0.65
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G K + CK C G L QH HTGER
Sbjct: 9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG+K Y C+ C KA+S +L TH ++H EK
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T V+ Y C+ECGK SL TH+ I H G+K
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + CN C FS S L+ H HTG K
Sbjct: 4 GSSGTG-----VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.86
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TG + Y C+ CGK
Sbjct: 2 SSGSSGTGVKPYMCNECGK 20
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G K ++C CG + SL H + HTGE+
Sbjct: 9 GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G KHFEC C F+ KS LS H HTG K
Sbjct: 4 GSSGTG-----GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 121 SDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K+++C C KA++ + L H +H EK
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 32.9 bits (76), Expect = 0.012
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + + C ECGK + +L+ H+KI H G+K
Sbjct: 4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEK-----PSGP 43
Score = 28.6 bits (65), Expect = 0.38
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TG + + C CGK
Sbjct: 2 SSGSSGTGGKHFECTECGK 20
Score = 27.5 bits (62), Expect = 0.83
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G K C CG K +L H HTGE+
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C C KA++ R L TH +H EK
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C ECGK R +L TH+KI H G+K
Sbjct: 4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEK 39
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C C F+++S L H HTG K
Sbjct: 4 GSSGTG-----EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.64
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 2 SSGSSGTGEKPYRCAECGK 20
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG + +L H HTGE+
Sbjct: 9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + CN C F +KS L H +HTG
Sbjct: 4 GSSGTG-----MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG+K Y C+ C KA+ + L HT H E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 32.1 bits (74), Expect = 0.022
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T ++ Y C+ECGK +S+ L H + H G+
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGES-----GPSS 43
Score = 28.2 bits (64), Expect = 0.48
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TG + Y C+ CGK
Sbjct: 3 SGSSGTGMKPYVCNECGK 20
Score = 27.4 bits (62), Expect = 0.75
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G K ++C CG + K L H THTGE
Sbjct: 9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K + C C KA+S L H +H EK
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + + C +CGK LN H++I H G+K
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+C C FS+ L+ H HTG K
Sbjct: 4 GSSGTG-----EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ + C CGK
Sbjct: 2 SSGSSGTGEKPFDCIDCGK 20
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C CG L QH HTGE+
Sbjct: 9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+CN C F+ S L+ H HTG K
Sbjct: 4 GSSGAG-----KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G K +KC+ C K ++ +L H +H EK
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 32.1 bits (74), Expect = 0.018
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ + C+EC K SL H++I H G+K
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEK-----PSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 358 HMITHTGERKYCCHICGK 375
+ G++ + C+ C K
Sbjct: 3 SGSSGAGKKLFKCNECKK 20
Score = 25.5 bits (57), Expect = 4.6
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G K C C SL H HTGE+
Sbjct: 9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.1
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 235 THKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTG 276
+ GKK ++C+ C + +L+ H HTG
Sbjct: 2 SSGSS-GAGKK-----LFKCNECKKTFTQSSSLTVHQRIHTG 37
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC VC K++ +L H +H EK
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C+ CH F S L+ H HTG K
Sbjct: 4 GSSGTG-----EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y CD C K + SL H++I H G+K
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEK 39
Score = 29.8 bits (68), Expect = 0.13
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C +C K
Sbjct: 2 SSGSSGTGEKPYKCDVCHK 20
Score = 28.2 bits (64), Expect = 0.47
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C VC + SL H HTGE+
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC VC KA+ L H +H E+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C C F S L H S H+G +
Sbjct: 4 GSSGTG-----EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.1 bits (74), Expect = 0.017
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C CGK + L H + H G++
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGER-----PSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C +CGK
Sbjct: 2 SSGSSGTGEKPYKCQVCGK 20
Score = 29.0 bits (66), Expect = 0.23
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C+VCG ++ L QH H+GER
Sbjct: 9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C+ C F+ KS L H SHTG ++
Sbjct: 4 GSSGTG-----EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC C KA++ + L H H E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.3 bits (72), Expect = 0.033
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C +CGK + L+ H++ H G++
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGER-----HSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 2 SSGSSGTGEKPYKCSDCGK 20
Score = 26.7 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C CG K L H +HTGER
Sbjct: 9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G +H+EC+ C F KS LS H H G K
Sbjct: 4 GSSGTG-----ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG ++Y+C C KA+ + L H +H EK
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 32.9 bits (76), Expect = 0.009
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T R Y C ECGK + +L+ H++I H G+K
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEK-----PSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGER Y C CGK
Sbjct: 2 SSGSSGTGERHYECSECGK 20
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G++ + C CG K +L H H GE+
Sbjct: 9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G +H+EC+ C F+ KS L H HTG K
Sbjct: 4 GSSGTG-----ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T R Y C ECGK + +L H++I H G+K
Sbjct: 4 GSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEK-----PSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG ++Y+C C KA++ + L H +H EK
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 31.3 bits (72), Expect = 0.042
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGER Y C CGK
Sbjct: 2 SSGSSGTGERHYECSECGK 20
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G++ + C CG K +L H HTGE+
Sbjct: 9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 38.3 bits (88), Expect = 5e-04
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 32/113 (28%)
Query: 129 GLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGDCTLDEWNDFIKRRV 188
+ Y+C +C+ S +H L R
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC------------------------------RNA 42
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
VCP C+ + +P ++H +K C EC + KS S+ H+ H
Sbjct: 43 AVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 36.8 bits (84), Expect = 0.002
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 43 TCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
C +CN H RL + C C F + Q+H +
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHESK-------CEY 67
Query: 103 KHFECNYCHAKFSNKSLLSDHISS 126
K C C F + + H
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVE 91
Score = 36.0 bits (82), Expect = 0.003
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 243 GKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKT 302
V+ K Y+C C AK + H +C C+ + + H K
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHESKC 65
Query: 303 HLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHG 338
+K C C + F + +H+ H
Sbjct: 66 E-------YKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 36.0 bits (82), Expect = 0.004
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHT 275
Y C C L S +H+++ C YC ++ + +H
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRN--------AAVCPYCSLRFFSPELKQEH-ESKC 65
Query: 276 GIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKF 314
C C + + + S+ H ++ H Q P
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGP 104
Score = 35.6 bits (81), Expect = 0.005
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
C +C + H + C YC +F + L +H S K
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCR--------NAAVCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 132 NYKCHVCDKAYSCRKALKTH 151
C C + + ++ H
Sbjct: 69 KLTCLECMRTFKSSFSIWRH 88
Score = 33.3 bits (75), Expect = 0.032
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 312 EKFKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKIKG-SLKQHMITHTGERKYCC 370
E ++C LC+ + + H+ +C C + LKQ + +K C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLTC 72
Query: 371 HICGKKLRGK 380
C + +
Sbjct: 73 LECMRTFKSS 82
Score = 31.0 bits (69), Expect = 0.20
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 31/109 (28%)
Query: 105 FECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSS 164
++C C+AK S+ H C C + + + H E +K+
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKL---- 70
Query: 165 KKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHT 213
C +C R +++ ++ +H VH
Sbjct: 71 -------------------------TCLECMRTFKSSFSIWRHQVEVHN 94
Score = 31.0 bits (69), Expect = 0.20
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 282 CKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKLNKHKNWAHGDKF 341
C++CN + H C C FF + +H++ K
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCR--------NAAVCPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 342 HLCKVCGAKIKGS 354
C C K S
Sbjct: 70 LTCLECMRTFKSS 82
Score = 26.0 bits (56), Expect = 9.9
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAH 94
CP C+ + ++H + TC C +TF++ + +H H
Sbjct: 45 CPYCSLRFFSPELKQEHES--KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C VC KA+S R++L H +H +K
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +EC+ C FS++ LS H H+G K
Sbjct: 4 GSSGTG-----EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C CGK R SL+ H++I H GKK
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKK-----PSGP 43
Score = 28.6 bits (65), Expect = 0.31
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C +CGK
Sbjct: 2 SSGSSGTGEKPYECSVCGK 20
Score = 27.9 bits (63), Expect = 0.61
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C VCG + SL H H+G++
Sbjct: 9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSK 165
SS + K YKC C K Y+ R L H +H EK S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 34.4 bits (80), Expect = 0.003
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ K ++C C ++ + L H H G K
Sbjct: 4 GSSGSV-----EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + Y C++CGK R +L+ H+++ H G+K
Sbjct: 4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEK 39
Score = 28.2 bits (64), Expect = 0.46
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ + E+ Y C CGK
Sbjct: 2 SSGSSGSVEKPYKCEDCGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
+K + C+ CG + +L H H GE+
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +EC C F+ K+ L+ H +HTG K
Sbjct: 4 GSSGTG-----EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C VC KA++ + L H H EK
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C C K + L H+K H G+K
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEK-----PSGP 43
Score = 27.9 bits (63), Expect = 0.68
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C +C K
Sbjct: 2 SSGSSGTGEKPYECKVCSK 20
Score = 27.5 bits (62), Expect = 0.85
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + CKVC K L QH THTGE+
Sbjct: 9 GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 9.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C +C K F KA +H Q+ H G K +
Sbjct: 15 CKVCSKAFTQKAHLAQH-QKTHTG-----EKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C VC KA+S +L H +H EK
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y CD C K SL H+++ H G+K
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEK-----PSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +EC+ C FS+ + L+ H H+G K
Sbjct: 4 GSSGTG-----EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C +C K
Sbjct: 2 SSGSSGTGEKPYECDVCRK 20
Score = 27.1 bits (61), Expect = 1.4
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C VC SL QH H+GE+
Sbjct: 9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C +C+K F + A+ +H QR H G K +
Sbjct: 15 CDVCRKAFSHHASLTQH-QRVHSG-----EKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C KA+ L TH ++H EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C+ECGK ++ +L TH+ I H G+K
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEK 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F S L+ H HTG K
Sbjct: 4 GSSGTG-----EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 2 SSGSSGTGEKPYKCNECGK 20
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG + +L H + HTGE+
Sbjct: 9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K + L H +H EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K ++CN C F + S LS H HTG K
Sbjct: 4 GSSGTG-----EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C+ECGK+ + L+ H++I H G+K
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEK 39
Score = 28.6 bits (65), Expect = 0.38
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 2 SSGSSGTGEKPYKCNECGK 20
Score = 26.3 bits (59), Expect = 2.6
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
G+K + C CG + L +H HTGE+
Sbjct: 9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S +G K + C C+KA+S + L H H +EK
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
K F C+ C FS+KS L H +H K
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.4 bits (67), Expect = 0.17
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + +GC C K S+ L H++ H +K
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEK 37
Score = 27.9 bits (63), Expect = 0.60
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C C K L H TH E+
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 26.3 bits (59), Expect = 2.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 361 THTGERKYCCHICGK 375
+GE+ + C C K
Sbjct: 4 GSSGEKPFGCSCCEK 18
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y C C K++S L H LH EK
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C C FS L H H+G K
Sbjct: 4 GSSGTG-----EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C ECGK L H+++ H G+K
Sbjct: 4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEK 39
Score = 29.0 bits (66), Expect = 0.22
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKLYNCKECGK 20
Score = 26.0 bits (58), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + CK CG L +H H+GE+
Sbjct: 9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + CN C FS KS+LS H +HTG K
Sbjct: 4 GSSGSG-----EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K Y C+ C K +S + L H H EK
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 32.5 bits (75), Expect = 0.014
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ + YGC+ECGK + L+ H++ H G+K
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEK-----PSGP 43
Score = 28.7 bits (65), Expect = 0.36
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GE+ Y C+ CGK
Sbjct: 3 SGSSGSGEKPYGCNECGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C CG K L H THTGE+
Sbjct: 9 GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.2
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C C KTF K+ H QR H G K +
Sbjct: 15 CNECGKTFSQKSILSAH-QRTHTG-----EKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K +KC +C K++ R L H+++H EK
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECD 255
T + + CD CGK R LN H + H +K
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEK-----PSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+C+ C F +S L+ H HT K
Sbjct: 4 GSSGTG-----EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 29.0 bits (66), Expect = 0.25
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ + C ICGK
Sbjct: 3 SGSSGTGEKPFKCDICGK 20
Score = 28.2 bits (64), Expect = 0.46
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C +CG + L +H + HT E+
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC C KA+ + H LH ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK S H+++ H G++
Sbjct: 4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQR-----PSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C C F + S + H HTG +
Sbjct: 4 GSSGTG-----EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 27.5 bits (62), Expect = 0.90
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYKCMECGK 20
Score = 26.4 bits (59), Expect = 2.2
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG S QH HTG+R
Sbjct: 9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 7e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +ECN C F+ KS L H +HTG
Sbjct: 4 GSSGTG-----EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C+ C KA++ + L H H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.8 bits (76), Expect = 0.009
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+EC K ++ +L H++ H G+
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGES-----GPSS 43
Score = 27.8 bits (63), Expect = 0.53
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C+ C K
Sbjct: 3 SGSSGTGEKPYECNECQK 20
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C C K +L H THTGE
Sbjct: 9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C+ C FS+KS L H+ +H+G K
Sbjct: 4 GSSGAG-----EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G K Y C C KA+S + L H H EK
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.5 bits (75), Expect = 0.015
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ YGC ECGK S+ L H + H G+K
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEK-----PSGP 43
Score = 28.7 bits (65), Expect = 0.38
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ GE+ Y C CGK
Sbjct: 2 SSGSSGAGEKPYGCSECGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C CG K L HM TH+GE+
Sbjct: 9 GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K YKC C K Y R L H +H EK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C C + + L H HTG K
Sbjct: 4 GSSGSG-----EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECD 255
+ + Y C ECGK K R L+ H+++ H G+K
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEK-----LSGPS 44
Score = 27.5 bits (62), Expect = 0.92
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GE+ Y C CGK
Sbjct: 3 SGSSGSGEKPYKCVECGK 20
Score = 27.1 bits (61), Expect = 1.0
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG K + L H HTGE+
Sbjct: 9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y C C KA+ L+ H +H EK
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C+ECGK L H++I H G+K
Sbjct: 4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C C F + S L +H HTG K
Sbjct: 4 GSSGTG-----EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.76
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYNCEECGK 20
Score = 26.3 bits (59), Expect = 2.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C+ CG L++H HTGE+
Sbjct: 9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C KA+ R +L H H EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F +S L+ H ++H+G K
Sbjct: 4 GSSGTG-----EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.013
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK ++R SL H+ H G+K
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEK-----PSGP 43
Score = 27.9 bits (63), Expect = 0.68
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 2 SSGSSGTGEKPYKCNECGK 20
Score = 27.5 bits (62), Expect = 0.81
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG + + SL H TH+GE+
Sbjct: 9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 25.2 bits (56), Expect = 6.0
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C C K FR +++ H Q H G K +
Sbjct: 15 CNECGKAFRARSSLAIH-QATHSG-----EKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG + Y C VC KA++ R L H +H EK
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G + + C C F+++S L H HTG K
Sbjct: 4 GSSGTG-----ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.007
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T R Y C CGK R +L H+KI H G+K
Sbjct: 4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEK-----PSGP 43
Score = 30.5 bits (70), Expect = 0.078
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGER Y C +CGK
Sbjct: 2 SSGSSGTGERPYICTVCGK 20
Score = 28.2 bits (64), Expect = 0.49
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G++ ++C VCG + +L +H HTGE+
Sbjct: 9 GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K Y C C KA+ L H +H EK
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C+YC F + L H HTG K
Sbjct: 4 GSSGSG-----EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ + Y CD CGK L H++I H G+K
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEK-----PSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ +GE+ Y C CGK
Sbjct: 2 SSGSSGSGEKPYVCDYCGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
+ G+K ++C CG + L +H HTGE+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 36.0 bits (84), Expect = 8e-04
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K FEC +C F K L H HTG K+
Sbjct: 4 GSSGTG-----QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K ++C C K++ + L TH +H EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + + C CGK +++ +L TH++I H G+K
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEK-----SGPS 43
Score = 27.9 bits (63), Expect = 0.59
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 358 HMITHTGERKYCCHICGKKLRGK 380
+ TG++ + C CGK R K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAK 25
Score = 27.5 bits (62), Expect = 0.76
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G K C CG + KG+L H HTGE+
Sbjct: 9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 26.0 bits (58), Expect = 2.7
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
CT C K+FR K H QR H G K +
Sbjct: 15 CTHCGKSFRAKGNLVTH-QRIHTG-----EKSGPSS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S G K Y+C C KA+S + +L H +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ Y CD+CGK + SL H ++ H G
Sbjct: 3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSG 38
Score = 32.9 bits (76), Expect = 0.008
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNY 133
+ G K + C+ C FS K L HI HTG
Sbjct: 3 SGSSGG-----EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 28.7 bits (65), Expect = 0.28
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 358 HMITHTGERKYCCHICGKKL--RGKLKEHM 385
+ GE+ Y C CGK +G L H+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 27.9 bits (63), Expect = 0.60
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKY 368
G+K + C CG KGSL H+ HTG
Sbjct: 8 GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 25.6 bits (57), Expect = 3.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 236 HKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTG 276
G+K Y CD CG + K +L HI HTG
Sbjct: 2 SSGS-SGGEK-----PYRCDQCGKAFSQKGSLIVHIRVHTG 36
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 9e-04
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C +C K+++ + L H +H EK
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +EC+ C F+ KS L H HTG K
Sbjct: 4 GSSGTG-----EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C CGK + L+ H++I H G+K
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEK-----PSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C ICGK
Sbjct: 2 SSGSSGTGEKPYECSICGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K + C +CG K L H HTGE+
Sbjct: 9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C+ C KA+S R +L TH +H +K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +ECN C FS +S L+ H + HTG K
Sbjct: 4 GSSGTG-----EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C++CGK R SL TH+ I H GKK
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKK-----PSGP 43
Score = 28.3 bits (64), Expect = 0.41
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 2 SSGSSGTGEKPYECNQCGK 20
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG ++ SL H HTG++
Sbjct: 9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K KC C KA+ + L H H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +C C F KS L H +H K+
Sbjct: 4 GSSGTG-----EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + C ECGK + L H++ H K
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDK 39
Score = 29.1 bits (66), Expect = 0.23
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ C CGK
Sbjct: 3 SGSSGTGEKPCKCTECGK 20
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C CG K L H TH ++
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 25.6 bits (57), Expect = 4.2
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
CT C K F K+ H QR HV KH +
Sbjct: 15 CTECGKAFCWKSQLIMH-QRTHVD-----DKHSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C+ C FS KS L H SHTG+K
Sbjct: 4 GSSGTG-----VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG+K Y C C K +S + L H H K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 32.1 bits (74), Expect = 0.018
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T V+ YGC +C K + L H++ H G K
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVK-----PSGP 43
Score = 28.3 bits (64), Expect = 0.43
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TG + Y C C K
Sbjct: 3 SGSSGTGVKPYGCSQCAK 20
Score = 27.9 bits (63), Expect = 0.57
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G K + C C +K L H +HTG +
Sbjct: 9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 24.8 bits (55), Expect = 7.7
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C+ C KTF K+ H QR+H G K +
Sbjct: 15 CSQCAKTFSLKSQLIVH-QRSHTG-----VKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC C K+++ + L+ H H E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C+ C F+ KS L H HTG ++
Sbjct: 4 GSSGTG-----EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C +CGK + L H+K H G++
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGER 39
Score = 27.5 bits (62), Expect = 0.74
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYKCSDCGK 20
Score = 26.7 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG K L+ H HTGER
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 24.8 bits (55), Expect = 8.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C+ C K+F K+ + H Q+ H G +H +
Sbjct: 15 CSDCGKSFTWKSRLRIH-QKCHTG-----ERHSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G + +KC+ C K + R L H LH +EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ F+CN C F +S L+ H+ H+ K+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ R + C+ECGK R L H ++ H +K
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREK 39
Score = 27.9 bits (63), Expect = 0.55
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GER + C+ CGK
Sbjct: 3 SGSSGSGERPFKCNECGK 20
Score = 25.2 bits (56), Expect = 5.6
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G++ C CG + L H+ H+ E+
Sbjct: 9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K F+C C +F+ S L H HTG K
Sbjct: 4 GSSGSG-----EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K ++C C K ++ L +H +H EK
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ + + C+ECGK L++H+++ H G+K
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEK-----PSGP 43
Score = 28.3 bits (64), Expect = 0.40
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ +GE+ + C CGK
Sbjct: 2 SSGSSGSGEKPFQCEECGK 20
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH 371
G+K C+ CG + L H HTGE+
Sbjct: 9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 88 KHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C FS S L+ H HTG K
Sbjct: 2 SS-GSSGTG-----GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C+ C KA+S L H +H EK
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 32.5 bits (75), Expect = 0.012
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK L H+++ H G+K
Sbjct: 2 SS-GSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEK-----PSGP 43
Score = 27.5 bits (62), Expect = 0.95
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TG + Y C+ CGK
Sbjct: 3 SGSSGTGGKPYQCNECGK 20
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G K + C CG L +H HTGE+
Sbjct: 9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 61/260 (23%)
Query: 119 LLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKEFIIDTGD---- 174
+ D +++ N+K CDK +++ +L + + +
Sbjct: 336 SIRDGLAT---WDNWKHVNCDKL---TTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 175 ----CTLDEWNDFIKRRV-TVCPKCNRD---YRNPRNMRKHLRRVHTSVRKYGCDECGKM 226
+ W D IK V V K ++ + P+ + ++ ++
Sbjct: 389 TILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV--------- 437
Query: 227 LKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHI----- 281
K + H+ I + ++ D Y ++Y S HI H H
Sbjct: 438 -KLENEYALHRSIV---DHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTL 492
Query: 282 ------------CKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFEKKKL 329
KI + A AS I N L + +K +CD + ++ +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-------KFYKPYICDNDPKYERLV 545
Query: 330 NKHKNW--AHGDKFHLCKVC 347
N ++ + K
Sbjct: 546 NAILDFLPKIEENLICSKYT 565
Score = 27.9 bits (61), Expect = 7.0
Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 65/216 (30%)
Query: 77 KKTFRNKATFQKHMQRAHVGLKISV-------SKHFECNYCHAKFSNKSLLSDH-----I 124
+K F + F + + + K SL+ I
Sbjct: 372 RKMFDRLSVFPPS-----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 125 SSHTGLKNYKCHVCDKA---------YSCRKALKTHTLL--------------H----EQ 157
S + K + ++ Y+ K + L+ H E
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 158 EKVIKSSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRK 217
+ + + F LD F+++++ R N + ++
Sbjct: 487 PERMTLFRMVF--------LDF--RFLEQKI-------RHDSTAWNASGSILNTLQQLKF 529
Query: 218 YG---CDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
Y CD K + +++ + E + KY
Sbjct: 530 YKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKY 564
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC C K Y+ + L H +H E+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C++CGK S+ +L+ H+K+ H G++
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGER-----PSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K ++C C +++K L H HTG +
Sbjct: 4 GSSGTG-----EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 27.5 bits (62), Expect = 0.76
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYKCEKCGK 20
Score = 26.7 bits (60), Expect = 1.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
G+K + C+ CG K +L H HTGER
Sbjct: 9 GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 88 KHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + CN C F KS L+ H HTG K
Sbjct: 2 SS-GSSGTG-----EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y C+ C K++ + L H +H EK
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 32.5 bits (75), Expect = 0.014
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C+ECGK + LN H++I H G+K
Sbjct: 2 SS-GSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEK 39
Score = 28.2 bits (64), Expect = 0.47
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 2 SSGSSGTGEKPYICNECGK 20
Score = 25.9 bits (58), Expect = 2.9
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
+ G+K ++C CG K L +H HTGE+
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K +KC C K ++ L +H +H EK
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+C C +F+ S L H HTG K
Sbjct: 4 GSSGSG-----EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + + C+ECGK L++H+++ H G+K
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEK 39
Score = 28.3 bits (64), Expect = 0.46
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GE+ + C CGK
Sbjct: 3 SGSSGSGEKPFKCEECGK 20
Score = 25.2 bits (56), Expect = 5.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K C+ CG + L H HTGE+
Sbjct: 9 GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K ++ L H +H K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K ++CN C F+ S L++H HTG+K
Sbjct: 4 GSSGTG-----EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK+ L H++I H G K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVK-----PSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
Score = 24.4 bits (54), Expect = 9.6
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCCH 371
G+K + C CG L H HTG +
Sbjct: 9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 88 KHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K FEC C FS S L+ H HTG K
Sbjct: 2 SS-GSSGTG-----EKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K ++C C K++S L TH +H EK
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 32.5 bits (75), Expect = 0.016
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + + C ECGK L TH++I H G+K
Sbjct: 2 SS-GSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEK-----PSGP 43
Score = 27.9 bits (63), Expect = 0.73
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ + C CGK
Sbjct: 3 SGSSGTGEKPFECAECGK 20
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C CG I L H HTGE+
Sbjct: 9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.001
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K FEC+ C F+ KS L H +HTG K
Sbjct: 4 GSSGTG-----EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K ++C C KA++ + L H H EK
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 31.3 bits (72), Expect = 0.040
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + + C EC K ++ +L H++ H G+K
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEK-----PSGP 43
Score = 27.4 bits (62), Expect = 0.79
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ + C C K
Sbjct: 3 SGSSGTGEKPFECSECQK 20
Score = 27.1 bits (61), Expect = 1.3
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C C K +L H THTGE+
Sbjct: 9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K +S L H +H EK
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K ++CN C FS S LS H HTG K
Sbjct: 4 GSSGTG-----EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T ++Y C+ECGK+ L+ H+KI H G+K
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEK-----PSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE++Y C+ CGK
Sbjct: 2 SSGSSGTGEKRYKCNECGK 20
Score = 25.9 bits (58), Expect = 2.9
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
G+K + C CG L QH HTGE+
Sbjct: 9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G + +EC C F KS L H SHTG K
Sbjct: 4 GSSGTG-----QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG + Y+C C KA+ + +L H H EK
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T R Y C ECGK K++ SL H++ H G+K
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEK-----PSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TG+R Y C CGK
Sbjct: 2 SSGSSGTGQRPYECIECGK 20
Score = 27.9 bits (63), Expect = 0.64
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G + + C CG K K SL H +HTGE+
Sbjct: 9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECN 108
C C K F+ K++ H +R+H G K +
Sbjct: 15 CIECGKAFKTKSSLICH-RRSHTG-----EKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y C C KA++ R L H +H ++K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK R +L H+KI H +K
Sbjct: 4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQK-----PSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C C F+ +S L H HT K
Sbjct: 4 GSSGTG-----EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.9 bits (63), Expect = 0.56
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYICAECGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K ++C CG I+ +L +H HT ++
Sbjct: 9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
G +EC+ C F+ K L H +H G
Sbjct: 2 SSGSSG-----ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ Y C ECGK +D L +H++ H G+
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGES-----GPSS 41
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S +G Y+C C KA++ + L +H H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 27.9 bits (63), Expect = 0.67
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 361 THTGERKYCCHICGK 375
+GE Y C CGK
Sbjct: 4 GSSGENPYECSECGK 18
Score = 26.7 bits (60), Expect = 1.3
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+ + C CG K L H TH GE
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K +KC C KA+ L +H +H EK
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K F+C C F L+ H+ HTG K
Sbjct: 4 GSSGSG-----EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.023
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
+ + + C ECGK + L +H +I H G+K
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEK-----PSGP 43
Score = 27.8 bits (63), Expect = 0.57
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ +GE+ + C CGK
Sbjct: 2 SSGSSGSGEKPFKCKECGK 20
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
G+K CK CG + L H+ HTGE+
Sbjct: 9 GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C C F+ K+ L+ H HTG K
Sbjct: 4 GSSGTG-----EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C C KA++ + L H +H EK
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK + +L H++I H G+K
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEK-----PSGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 2 SSGSSGTGEKPYRCGECGK 20
Score = 26.7 bits (60), Expect = 1.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG K +L QH HTGE+
Sbjct: 9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K YKC+ C K ++ L H +H EK
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + Y C+ECGK+ L H +I H G+K
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEK 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F+ S L++H HTG K
Sbjct: 4 GSSGSG-----EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GE+ Y C+ CGK
Sbjct: 3 SGSSGSGEKPYKCNECGK 20
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C FS S L+ H HTG K
Sbjct: 4 GSSGTG-----EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C KA+S L H +H EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.3 bits (77), Expect = 0.009
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK L H++I H G+K
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEK-----PSGP 43
Score = 27.5 bits (62), Expect = 0.86
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
Score = 25.2 bits (56), Expect = 5.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG L +H HTGE+
Sbjct: 9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.1 bits (82), Expect = 0.002
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKCH C K + L H L+H EK
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCH 136
+ G K ++C+ C F S L+ H HTG K
Sbjct: 4 GSSGTG-----EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.017
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK+ + L H+ I H G+K
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEK-----PSGP 43
Score = 27.8 bits (63), Expect = 0.57
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y CH CGK
Sbjct: 2 SSGSSGTGEKPYKCHECGK 20
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCCH 371
G+K + C CG + L +H + HTGE+
Sbjct: 9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K ++C C K++S L H +H E
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGEN 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K EC C FS S L H HTG
Sbjct: 4 GSSGTG-----EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.1 bits (74), Expect = 0.017
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + + C ECGK L H++I H G+
Sbjct: 4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGEN-----PSGP 43
Score = 27.5 bits (62), Expect = 0.96
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ + C CGK
Sbjct: 3 SGSSGTGEKPHECRECGK 20
Score = 26.3 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K H C+ CG L H HTGE
Sbjct: 9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K +KC C K+Y+ R L H +H EK
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+C C ++ + L+ H HTG K
Sbjct: 4 GSSGTG-----EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.017
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + + C ECGK R L H+++ H G+K
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEK-----PSGP 43
Score = 27.5 bits (62), Expect = 0.79
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ + C CGK
Sbjct: 3 SGSSGTGEKPFKCGECGK 20
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G+K C CG + L QH HTGE+
Sbjct: 9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K ++ L H +H EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 88 KHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F+ S L+ H HTG K
Sbjct: 2 SS-GSSGTG-----EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.016
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK+ L H+ I H G+K
Sbjct: 2 SS-GSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEK-----PSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
Score = 25.2 bits (56), Expect = 6.2
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
+ G+K + C CG L +H HTGE+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K Y+C+ C KA+ + L H H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 33.7 bits (78), Expect = 0.005
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +ECN C F KSLL H +H G+
Sbjct: 4 GSSGSG-----EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 31.7 bits (73), Expect = 0.029
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + Y C+ECGK + L H++ H G
Sbjct: 5 SSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVS 39
Score = 28.7 bits (65), Expect = 0.36
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GE+ Y C+ CGK
Sbjct: 3 SGSSGSGEKPYECNECGK 20
Score = 25.6 bits (57), Expect = 4.4
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG K L H TH G
Sbjct: 9 GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K +KC C K + +H H EK
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
Score = 34.5 bits (80), Expect = 0.003
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F+C C F S H SH+G K
Sbjct: 4 GSSGSG-----EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 31.8 bits (73), Expect = 0.028
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCG 258
+ + + C+ECGK + +H++ H G+K G
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEK-----PSGPS-SG 46
Score = 27.9 bits (63), Expect = 0.57
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K C+ CG H +H+GE+
Sbjct: 9 GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.98
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ +GE+ + C CGK
Sbjct: 2 SSGSSGSGEKPFKCEECGK 20
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +EC C FS + L H HTG K
Sbjct: 4 GSSGTG-----EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C C KA+S L H +H EK
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 31.7 bits (73), Expect = 0.030
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK L H+++ H G+K
Sbjct: 4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEK-----PSGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 2 SSGSSGTGEKPYECKECGK 20
Score = 25.9 bits (58), Expect = 3.3
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
+ G+K + CK CG L QH HTGE+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K ++ L H +H K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 88 KHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F+ S L+ H HTG K
Sbjct: 2 SS-GSSGTG-----EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 31.7 bits (73), Expect = 0.023
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 206 KHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK+ L H+++ H G K
Sbjct: 2 SS-GSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGK-----PSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
Score = 25.2 bits (56), Expect = 6.5
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
+ G+K + C CG L +H HTG +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S G Y C C K+++ R +L H Q
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 29.9 bits (68), Expect = 0.11
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
Y C +CGK R SL H++
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSG 38
Score = 29.2 bits (66), Expect = 0.22
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
G+ +LC CG +GSL H + +
Sbjct: 8 GETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 28.4 bits (64), Expect = 0.41
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 361 THTGERKYCCHICGKKL--RGKLKEHM 385
+ GE Y C CGK RG L H
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 26.5 bits (59), Expect = 2.1
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYK 134
+ C C F+ + L+ H S +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 25.3 bits (56), Expect = 5.5
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLK 98
C C K+F + + H QR+
Sbjct: 13 LCGQCGKSFTQRGSLAVH-QRSCSQSG 38
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.5 bits (80), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y C C K++ L H +H EK
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K + C C F S L H H+G K
Sbjct: 4 GSSGTG-----EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK + L H+++ H G+K
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEK-----PSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 3 SGSSGTGEKPYNCKECGK 20
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + CK CG + L +H H+GE+
Sbjct: 9 GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 24.5 bits (54), Expect = 9.8
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLK 98
C C K+FR + KH QR H G K
Sbjct: 15 CKECGKSFRWASCLLKH-QRVHSGEK 39
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ R YGC+ECGK L H K H +K
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREK 39
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G + Y C+ C K + L H H +EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 31.7 bits (73), Expect = 0.029
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ + CN C F S L +H+ H K+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 28.3 bits (64), Expect = 0.54
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ +GER Y C+ CGK
Sbjct: 2 SSGSSGSGERPYGCNECGK 20
Score = 27.5 bits (62), Expect = 0.93
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G++ + C CG L +H+ H E+
Sbjct: 9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G F C+ C F++K+ L H HTG +
Sbjct: 4 GSSGTG-----ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG + C C K ++ + L H +H E+
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 32.1 bits (74), Expect = 0.017
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + C ECGK+ + +L H+KI H G++
Sbjct: 4 GSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGER-----PSGP 43
Score = 29.0 bits (66), Expect = 0.28
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE + C CGK
Sbjct: 3 SGSSGTGENPFICSECGK 20
Score = 27.8 bits (63), Expect = 0.72
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+ +C CG K +L H HTGER
Sbjct: 9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K +EC+ C F KS L H HTG
Sbjct: 4 GSSGTG-----EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K Y+C C K++ + L H +H E
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C +CGK + L+ H++I H G+
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGEN-----PSGP 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE+ Y C CGK
Sbjct: 2 SSGSSGTGEKPYECSDCGK 20
Score = 27.5 bits (62), Expect = 0.78
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG K L H HTGE
Sbjct: 9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K ++ L H +H EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F+ S L H HTG K
Sbjct: 4 GSSGTG-----EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.010
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK+ L H+ I H G+K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEK-----PSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TGE+ Y C+ CGK
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
Score = 25.1 bits (56), Expect = 6.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG L +H HTGE+
Sbjct: 9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.2 bits (79), Expect = 0.003
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S +G K Y C C + +S L H +H +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS 37
Score = 28.1 bits (63), Expect = 0.50
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + Y C EC + + L H+K+ H K
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKS 37
Score = 27.7 bits (62), Expect = 0.70
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 361 THTGERKYCCHICGK 375
+GE+ Y C C +
Sbjct: 4 GSSGEKPYSCAECKE 18
Score = 26.5 bits (59), Expect = 1.7
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
K + C C FS+ + L H HT
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 25.0 bits (55), Expect = 7.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVG 96
+C CK+TF + +H Q+ H
Sbjct: 12 SCAECKETFSDNNRLVQH-QKMHTV 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G +KC CD+ ++ R L H H ++
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 27.5 bits (61), Expect = 0.96
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ C +C ++ R+ L H++ H K
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERT-HARKS 39
Score = 26.4 bits (58), Expect = 2.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTG 129
F+C+ C F+ ++ L H +H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 25.2 bits (55), Expect = 6.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 314 FKCDLCDKEFFEKKKLNKHK 333
FKC CD+ F ++ L +H+
Sbjct: 13 FKCSKCDRVFTQRNYLVQHE 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K YKC C KA+ L H +H +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 33.2 bits (77), Expect = 0.008
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + Y C ECGK LN H++I H G +
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYR 39
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++C+ C F + L++H HTG +
Sbjct: 4 GSSGSG-----EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ +GE+ Y C CGK
Sbjct: 2 SSGSSGSGEKPYKCSECGK 20
Score = 25.9 bits (58), Expect = 3.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K + C CG L +H HTG R
Sbjct: 9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS G + ++C C K + H +H EK
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
R + C +CGK + H++I H G+K
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEK 39
Score = 31.4 bits (72), Expect = 0.037
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G + C+ C F S H HTG K
Sbjct: 4 GSSGHG-----ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.091
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 331 KHKNWAHGDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
+ HG++ H C CG + QH HTGE+
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.28
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ GER + C CGK
Sbjct: 2 SSGSSGHGERGHRCSDCGK 20
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 63/403 (15%), Positives = 112/403 (27%), Gaps = 170/403 (42%)
Query: 84 ATFQKHM----QRAHVG-----LKISVSKHFECNY-----CHAKFSNKSLLSDH----IS 125
F ++ + + VG L + + FE Y HA + LL ++ +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCL-TEFENCYLEGNDIHALAA--KLLQENDTTLVK 118
Query: 126 SHTGLKNYK--CHVCDKAYSCRK--AL---------KTHTL----------LHE-QE--- 158
+ +KNY + + + + AL + + E ++
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 159 -------KVIKSSKK---EFIIDTGDCT------LD--EW---------NDFIKRRVTV- 190
+IK S + E I T D L+ EW D++ + +
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPIS 237
Query: 191 CP------------KCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKML---------KS 229
CP P +R +L+ G + L S
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLK---------GATGHSQGLVTAVAIAETDS 288
Query: 230 RDSLNTHKKIQHEGKKVKVKYEYECDYCGAK----YPNKY----TLSDHISGHTGIP--- 278
+S + K + V + + G + YPN L D + + G+P
Sbjct: 289 WESFFVSVR-----KAITVLF-----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 279 ------------NHICKICNKGYACAASLKIHNIKTHLQF--TGVPIEKFKCDLCDKEFF 324
+++ K N ++I + +G P L
Sbjct: 339 LSISNLTQEQVQDYVNK-TNSHLPAGKQVEISLVNGAKNLVVSGPPQ-----SL------ 386
Query: 325 EKKKLNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERK 367
+G L K K L Q I + ERK
Sbjct: 387 ------------YGLNLTLRKA---KAPSGLDQSRIPFS-ERK 413
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 34.1 bits (79), Expect = 0.004
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C ECGK SL H + H G+K
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK-----PSGP 44
Score = 31.4 bits (72), Expect = 0.036
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTH 151
SS TG K Y+C C KA+ +L H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 31.0 bits (71), Expect = 0.046
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHI-SSHTGLKNYKC 135
+ G K +EC C F + L H HTG K
Sbjct: 4 GSSGTG-----KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 29.5 bits (67), Expect = 0.21
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TG++ Y C CGK
Sbjct: 2 SSGSSGTGKKPYECIECGK 20
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
S +G + Y+C C K++ + +L H +H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 31.0 bits (71), Expect = 0.046
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ R Y C ECGK + + SL H++I H G
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI-HTGSG 37
Score = 28.7 bits (65), Expect = 0.29
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNY 133
+ +EC C F K L+ H HTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 25.6 bits (57), Expect = 3.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 73 CTMCKKTFRNKATFQKHMQRAHVGLK 98
C C K+FR K + H +R H G
Sbjct: 13 CQECGKSFRQKGSLTLH-ERIHTGSG 37
Score = 25.6 bits (57), Expect = 3.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 361 THTGERKYCCHICGK--KLRGKLKEH 384
+G+R Y C CGK + +G L H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 25.2 bits (56), Expect = 4.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKY 368
G + + C+ CG + KGSL H HTG
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG K YKC+ C K ++ L H +H EK
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K ++CN C F+ S L+ H HTG K
Sbjct: 4 GSSGTG-----KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.009
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T + Y C+ECGK+ L H+ I H G+K
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEK-----PSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 358 HMITHTGERKYCCHICGK 375
+ TG++ Y C+ CGK
Sbjct: 3 SGSSGTGKKPYKCNECGK 20
Score = 24.8 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G K + C CG L +H HTGE+
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG + +KC+ C K++ L H +H EK
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G + +CN C F + L H HTG K
Sbjct: 4 GSSGTG-----ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.026
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYEC 254
T R + C+ECGK L H++I H G+K
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEK-----PSGP 43
Score = 28.2 bits (64), Expect = 0.44
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGER + C+ CGK
Sbjct: 2 SSGSSGTGERPHKCNECGK 20
Score = 26.3 bits (59), Expect = 2.5
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGAKI--KGSLKQHMITHTGERKYCC 370
G++ H C CG L QH HTGE+
Sbjct: 9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS +G K++ C C K + AL+ H +H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 32.2 bits (74), Expect = 0.021
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + + CDECGK +L H+++ H G+K
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEK 39
Score = 30.3 bits (69), Expect = 0.096
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K C+ C F S L H H G K
Sbjct: 4 GSSGSG-----EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 28.3 bits (64), Expect = 0.52
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+K H C CG +L+ H H GE+
Sbjct: 9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 27.6 bits (62), Expect = 0.82
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 358 HMITHTGERKYCCHICGK 375
+ +GE+ + C CGK
Sbjct: 3 SGSSGSGEKSHTCDECGK 20
Score = 25.2 bits (56), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 72 TCTMCKKTFRNKATFQKHMQRAHVGLKIS 100
TC C K F + + H QR H+G K S
Sbjct: 14 TCDECGKNFCYISALRIH-QRVHMGEKCS 41
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS TG Y+C C K +S + L +H H +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G +EC C FS K L H +H+G
Sbjct: 4 GSSGTG-----ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.1 bits (74), Expect = 0.021
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 RRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T Y C ECGK+ +D L +H+K H G+
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQS 39
Score = 28.6 bits (65), Expect = 0.34
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ TGE Y C CGK
Sbjct: 2 SSGSSGTGENPYECCECGK 20
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 338 GDKFHLCKVCGA--KIKGSLKQHMITHTGERKYCC 370
G+ + C CG K L H TH+G+
Sbjct: 9 GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 122 DHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS T K+Y C+ C KA++ L H +H ++
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 30.6 bits (70), Expect = 0.056
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
T + Y C+ECGK L H+KI H K
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKS 39
Score = 29.9 bits (68), Expect = 0.11
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 357 QHMITHTGERKYCCHICGK 375
+ T + Y C+ CGK
Sbjct: 2 SSGSSGTDSKSYNCNECGK 20
Score = 27.5 bits (62), Expect = 0.84
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 91 QRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKC 135
+ SK + CN C F+ L+ H HT
Sbjct: 4 GSSGTD-----SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.1 bits (85), Expect = 0.010
Identities = 11/60 (18%), Positives = 14/60 (23%)
Query: 96 GLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
G A S + + Y+CHVC L H H
Sbjct: 144 GSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 37.1 bits (85), Expect = 0.011
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 12/124 (9%)
Query: 65 HDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHI 124
++ S + A KH R + S ++C+ C A + L H+
Sbjct: 141 NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Query: 125 SSH-----TGLKNYKCHVCDKAY-----SCRKA-LKTHTLLHEQEKVIKSSKKEFII-DT 172
+SH L + + + + + + +++ + + D
Sbjct: 201 ASHGLHGNMTLTSSEIQRHITEFISSWQNHPIVQVSADVENKKTAQLLHADTPRLVTWDA 260
Query: 173 GDCT 176
G CT
Sbjct: 261 GLCT 264
Score = 36.8 bits (84), Expect = 0.012
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 200 NPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGK 244
+ R L +S Y C C +L S L+ H
Sbjct: 163 SKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 33.7 bits (76), Expect = 0.12
Identities = 9/76 (11%), Positives = 17/76 (22%), Gaps = 5/76 (6%)
Query: 20 SGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKT 79
S S VD + + + +P + C +C
Sbjct: 134 SRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPP----TASSGHGYQCHVCSAV 189
Query: 80 FRNKATFQKHMQRAHV 95
+ H +H
Sbjct: 190 LFSPLDLDAH-VASHG 204
Score = 32.1 bits (72), Expect = 0.40
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 229 SRDSLNTHKKIQHEGKKVKV--KYEYECDYCGAKYPNKYTLSDHISGH 274
S K G + Y+C C A + L H++ H
Sbjct: 156 EATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 30.6 bits (68), Expect = 0.98
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 38 KNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCT 74
C +C+ ++ H+ + T +
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 33.3 bits (75), Expect = 0.023
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 30 ADKWRALIKNKTK-TCPICNK-SYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQ 87
++W I +K +CP C ++KH+ + K TC C K R+ A +
Sbjct: 22 EEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCGKQLRSLAGMK 79
Query: 88 KHMQRAHVGLKI 99
H+ H L
Sbjct: 80 YHVMANHNSLPS 91
Score = 33.3 bits (75), Expect = 0.027
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 178 DEWNDFIKRRVTV-CPKCNR-DYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNT 235
++W I + +V CP C + ++KH+ + + C CGK L+S +
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCGKQLRSLAGMKY 80
Query: 236 HKKIQHEGKKV 246
H H
Sbjct: 81 HVMANHNSLPS 91
Score = 26.4 bits (57), Expect = 6.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 344 CKVCGAKIKGSLKQHMITHTGERKYCCHICGKKLRGK--LKEHML 386
C+ G K LK+HM + + + CH CGK+LR +K H++
Sbjct: 40 CQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHVM 83
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.5 bits (72), Expect = 0.030
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 123 HISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
TG+K ++C CD+++S L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.2 bits (66), Expect = 0.16
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKK 238
R T ++ + C +C + D L H+K
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 28.5 bits (64), Expect = 0.32
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 358 HMITHTGERKYCCHICGKK 376
TG + + C C +
Sbjct: 2 STRGSTGIKPFQCPDCDRS 20
Score = 25.8 bits (57), Expect = 3.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 270 HISGHTGIPNHICKICNKGYACAASLKIHNIKTHL 304
G TGI C C++ ++ + L +H K H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH-RKRHM 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 32.3 bits (73), Expect = 0.030
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 200 NPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGA 259
+ + K +++H R C +CG + R +L+ K C+ C
Sbjct: 2 SSGSSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSRRKT-------------PMCEKCRK 47
Query: 260 KYPNKYTLSDHISGHTG 276
+ L+ +G
Sbjct: 48 DSCQEAALNKDEGNESG 64
Score = 31.9 bits (72), Expect = 0.044
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 84 ATFQKHMQRAHVGLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYS 143
+ K Q+ H+G + +C+ C F S+ + K C C K
Sbjct: 4 GSSGKR-QKIHLG-----DRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSC 50
Query: 144 CRKALKTHTLLHEQEK 159
AL +K
Sbjct: 51 QEAALNKDEGNESGKK 66
Score = 30.8 bits (69), Expect = 0.13
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 56 NMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVSKHFECNYCHAKFS 115
+ K + +H + + C+ C F ++T + K C C
Sbjct: 5 SSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRR-------------KTPMCEKCRKDSC 50
Query: 116 NKSLLSDHISSHTGLKNY 133
++ L+ + +G K
Sbjct: 51 QEAALNKDEGNESGKKTS 68
Score = 29.6 bits (66), Expect = 0.30
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDKFHLCKVCGAKI--KGSLKQHMITHTGERKY 368
KC C F + L++ K +C+ C + +L + +G++
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 27.3 bits (60), Expect = 1.9
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 353 GSLKQHMITHTGERKYCCHICGK 375
GS + H G+R C CG
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGI 26
Score = 26.9 bits (59), Expect = 3.1
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 266 TLSDHISGHTGIPNHICKICNKGYACAASLKIHNIKTHLQFTGVPIEKFKCDLCDKEFFE 325
+ H G + C C + ++L C+ C K+ +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK-------------TPMCEKCRKDSCQ 51
Query: 326 KKKLNKHKNWAHGDK 340
+ LNK + G K
Sbjct: 52 EAALNKDEGNESGKK 66
Score = 26.5 bits (58), Expect = 3.3
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 212 HTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ + C++C K +LN + GKK
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGN-ESGKK 66
Score = 26.2 bits (57), Expect = 5.5
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 5/49 (10%)
Query: 329 LNKHKNWAHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICGKKL 377
K + GD+ C CG T + + C C K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFI-----RRSTLSRRKTPMCEKCRKDS 49
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.4 bits (71), Expect = 0.032
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 338 GDKFHLCKVCGAKIKGS--LKQHMITHTGERKYCCHIC 373
K C++CG + L +H ++H+GE+ Y
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.4 bits (71), Expect = 0.035
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYKCHVC 138
K C C F + L+ H SH+G K Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.049
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS K C +C K + L H L H EK
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 28.0 bits (62), Expect = 0.71
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 210 RVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKK 245
+ ++ C+ CGK+ + LN HK H G+K
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEK 39
Score = 27.6 bits (61), Expect = 0.88
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 186 RRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDEC 223
R+ C C + +R+ ++ +H + H+ + Y
Sbjct: 10 RKQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 1.5
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 243 GKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTG 276
G + + + C+ CG + + Y L+ H H+G
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.038
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 30/83 (36%)
Query: 156 EQEKVIK------SSKKEFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLR 209
EQ K ++ ++ + L+EW + ++ + +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEW-----------------NQR-QS--EQVE 132
Query: 210 RVHTSVRKYGCDECGKMLKSRDS 232
+ + R D+ + D+
Sbjct: 133 KNKINNRIA--DK--AFYQQPDA 151
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 34.3 bits (79), Expect = 0.077
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECG 224
CP C+++YR+P + RR H C ECG
Sbjct: 70 CPACDKEYRDPLD-----RRFHAQPV--ACPECG 96
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.10
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ 157
SS K +KC+ C+K +SC K L H +H +
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 24.8 bits (53), Expect = 8.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHT 128
K F+CN C FS L+ H HT
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIHT 36
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 30.3 bits (67), Expect = 0.11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 43 TCPICNKSYPGARNMRKHLRLVH 65
TCPIC +RN+R+HL L H
Sbjct: 26 TCPICYAVIRQSRNLRRHLELRH 48
Score = 26.4 bits (57), Expect = 2.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 190 VCPKCNRDYRNPRNMRKHLRRVH 212
CP C R RN+R+HL H
Sbjct: 26 TCPICYAVIRQSRNLRRHLELRH 48
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 30.0 bits (68), Expect = 0.12
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 91 QRAHVGLKISVSKHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKC 135
+ G K F C + C +FS LS H SH+G+K
Sbjct: 4 GSSGTG-----EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 28.8 bits (65), Expect = 0.32
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 123 HISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEK 159
SS TG K + C C +S L H H K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
Score = 28.4 bits (64), Expect = 0.38
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 332 HKNWAHGDKFHLCKV--CGAKIKGS--LKQHMITHTGERKYCC 370
+ G+K C CG + S L +H +H+G +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 27.7 bits (62), Expect = 0.79
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 209 RRVHTSVRKYGCDE--CGKMLKSRDSLNTHKKIQHEGKK 245
T + + C CG D L+ H++ H G K
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVK 41
Score = 25.3 bits (56), Expect = 4.8
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 358 HMITHTGERKYCCH--ICGKK 376
+ TGE+ + C CG +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWR 23
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 30.4 bits (69), Expect = 0.17
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 117 KSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLHEQEK 159
S S + ++++ C C K Y LK HT H EK
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK 46
Score = 28.9 bits (65), Expect = 0.52
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 326 KKKLNKHKNWAHGDKFHLCKV--CGAKIKGS--LKQHMITHTGERKYCCHI--CGKK 376
+ + + + H+C CG S LK H THTGE+ + C C ++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58
Score = 28.1 bits (63), Expect = 1.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 103 KHFECNY--CHAKFSNKSLLSDHISSHTGLKNYKCHV--CDKAYSCRKALKTHTLLH 155
+ C++ C + S L H +HTG K + C C++ ++ L H H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 27.7 bits (62), Expect = 1.2
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 185 KRRVTVC--PKCNRDYRNPRNMRKHLRRVHTSVRKYGCD--ECGKMLKSRDSLNTHKKI 239
+ R +C P C + Y +++ H R HT + + C C + D L+ H++
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 32.4 bits (74), Expect = 0.31
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVH---TSVRKYGCDECGKMLKSRDSLNTHKKIQ 240
C KC+R+Y +P + RR H + C +CG L +I+
Sbjct: 164 CEKCSREYHDPHD-----RRFHAQPVA-----CFDCGPSLSFVGEGCFDDEIK 206
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.44
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 10/39 (25%)
Query: 39 NKTKTCPICNKSYPGARNMRKHLRLVHDKNS-TTTCTMC 76
N TCP C P ++V + C +C
Sbjct: 19 NIVLTCPECKVYPP---------KIVERFSEGDVVCALC 48
Score = 26.9 bits (59), Expect = 8.2
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 18/48 (37%)
Query: 188 VTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYG-----CDECGKMLKSR 230
V CP+C P + V ++ C CG +L +
Sbjct: 21 VLTCPECKVY---PPKI----------VERFSEGDVVCALCGLVLSDK 55
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.55
Identities = 6/49 (12%), Positives = 15/49 (30%)
Query: 107 CNYCHAKFSNKSLLSDHISSHTGLKNYKCHVCDKAYSCRKALKTHTLLH 155
+ + S + H + G K + ++ + L+ L
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.8 bits (62), Expect = 0.58
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 102 SKHFECNYCHAKFSNKSLLSDHISSH 127
+ + C++C +F + L H++ H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
Score = 24.3 bits (53), Expect = 9.4
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 310 PIEKFKCDLCDKEFFEKKKLNKHKNWAH 337
P + C C +EF + L H N H
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMN-VH 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.66
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS + K + C C+K + + +L+ H +H EK
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 1.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 96 GLKISVSKHFECNYCHAKFSNKSLLSDHISSHTGLK 131
G S K F C YC+ F K L H+ HT K
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.9 bits (69), Expect = 0.74
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 213 TSVRKYGCDECGKMLKSRDSLNTHKKIQH 241
+ Y C+ C + +L+ H + H
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 30.9 bits (69), Expect = 0.78
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 44 CPICNKSYPGARNMRKHLRLVHDKNSTTTCT 74
C +CN + + +HLR H +++T
Sbjct: 119 CNVCNARFSTMSALSEHLRSDHRDDASTLLA 149
Score = 29.8 bits (66), Expect = 1.7
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 312 EKFKCDLCDKEFFEKKKLNKHKNWAHGD 339
+ C++C+ F L++H H D
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRD 142
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.5 bits (65), Expect = 0.75
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 44 CPICNKSYPGARNMRKHLR-LVHDKNSTTTCTMCKKTFRNKATFQKHMQRAHVGLKISVS 102
C +C+ H + H + + + K + A +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQG---EDSVPAKKFKAAPAEISDGED 91
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLKNYK 134
+ C C+ FS+ + H T +KN +
Sbjct: 92 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLR 123
Score = 26.5 bits (57), Expect = 8.7
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 220 CDECGKMLKSRDSLNTHKKIQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPN 279
C C +L S H + + KV+ IS +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGED-RS 93
Query: 280 HICKICNKGYACAASLKIHNI-KTHLQ 305
C +CN ++ + H I KTH++
Sbjct: 94 KCCPVCNMTFSSPVVAESHYIGKTHIK 120
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain,
ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.37.1.4
Length = 55
Score = 27.8 bits (61), Expect = 0.90
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 253 ECDYCGAKYPNKYTLSDHI 271
EC CG KY + ++ DHI
Sbjct: 15 ECTLCGVKYSARLSIRDHI 33
Score = 26.3 bits (57), Expect = 3.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 106 ECNYCHAKFSNKSLLSDHISSHTGLKNYKCHV 137
EC C K+S + + DHI S + + V
Sbjct: 15 ECTLCGVKYSARLSIRDHIFSKQHISKVRETV 46
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 30.2 bits (67), Expect = 0.90
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 8/116 (6%)
Query: 31 DKWRALIKNKTKTCPICNKSYPGARNMRKHLRLVHDKNSTTTCTMCKKTFRNKATFQKHM 90
D +R K C IC+ + K TT C++ +N +
Sbjct: 65 DIYRTGKGYDKKICNICHILKNTD---GFEINQTDAKGRKTTRPSCRECRKNIDGVKLSS 121
Query: 91 QRAHV--GLKISVSKHFECNYCH---AKFSNKSLLSDHISSHTGLKNYKCHVCDKA 141
+ F C C +L+ DH + + C C+
Sbjct: 122 TEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTG 177
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (60), Expect = 1.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEKVIKSS 164
SS + K+++C C + + +L H +LH +K S
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS 44
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 30.2 bits (67), Expect = 1.1
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 336 AHGDKFHLCKVCGAKIKGSLKQHMITHTGERKYCCHICG 374
+ LC CG+ + + TG R C +C
Sbjct: 177 VETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCA 215
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 205 RKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQ 240
++ L+++ S++ Y D S +L ++
Sbjct: 19 KQALKKLQASLKLYADD-------SAPALAIKATME 47
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 100 SVSKHFECNYCHAKFSNKSLLSDHISSHTG 129
S K + C C +F K +S H+ SH G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.6 bits (55), Expect = 4.1
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQ 157
S +G K Y C VC + + + H H+
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 29.6 bits (66), Expect = 1.9
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 12/40 (30%)
Query: 247 KVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICN 286
+ K +C GA Y ++ ICK+
Sbjct: 274 RGKPVEKCPLSGACYSPEFK------------GQICKVTT 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 29.3 bits (65), Expect = 2.2
Identities = 5/40 (12%), Positives = 9/40 (22%), Gaps = 12/40 (30%)
Query: 247 KVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICN 286
+ G+KY + I +I
Sbjct: 283 EDTPSVSDPLTGSKYVITEK------------DKIDRIAM 310
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 29.0 bits (65), Expect = 2.5
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 187 RVTVCPKCNRDYRN----PRNMRKHLRRVHTSVRKYGCDECGKMLK 228
V C KC Y K R+ T + G C L+
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELR 182
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
SS + K +KC +C+ A + LK H H EK
Sbjct: 2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 187 RVTVCPKCNRDYRN----PRNMRKHLRRVHTSVRKYGCDECGKMLK 228
V C KC Y K R+ T + G C L+
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELR 182
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase,
tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Length = 123
Score = 27.7 bits (61), Expect = 3.3
Identities = 16/79 (20%), Positives = 25/79 (31%)
Query: 3 FDRAEVFLSQNVQMSNLSGSCVVDVITADKWRALIKNKTKTCPICNKSYPGARNMRKHLR 62
F AE + +++ + V K + K K + C C+ N R LR
Sbjct: 22 FSLAERVFPYSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLR 81
Query: 63 LVHDKNSTTTCTMCKKTFR 81
+ C C R
Sbjct: 82 QKRMPHIVVKCLECGHIMR 100
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.9 bits (64), Expect = 3.3
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 189 TVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKV 248
VC C + + N + + K + K++ T + + ++
Sbjct: 105 CVCMHCGKLLLDEHN-ELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLV- 162
Query: 249 KYEYECDYCGAKYP 262
CG P
Sbjct: 163 ----SRGGCGNTQP 172
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
engineering, molecular chaperone, redox-active center,
PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Length = 291
Score = 28.3 bits (64), Expect = 3.6
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 30/71 (42%)
Query: 191 CPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKKIQHEGKKVKVKY 250
CP C+++ R T++ G E M++ E + +
Sbjct: 235 CP-CSKE------------RFETAILGLGKKEIQDMIE-------------EDGQAEAV- 267
Query: 251 EYECDYCGAKY 261
C +C KY
Sbjct: 268 ---CHFCNEKY 275
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 25.5 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLK 131
K + C +C +F++ L H+ HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein;
2.90A {Chlorobaculum tepidum}
Length = 332
Score = 28.6 bits (63), Expect = 4.0
Identities = 5/79 (6%), Positives = 18/79 (22%), Gaps = 3/79 (3%)
Query: 167 EFIIDTGDCTLDEWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKM 226
I + + + P + + + + + K+
Sbjct: 256 SIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYV---SGKLEKV 312
Query: 227 LKSRDSLNTHKKIQHEGKK 245
L++ + K+
Sbjct: 313 FSVSKMLDSVISKEERNKE 331
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA
alpha fold, beta HAIR RAB5A GTPase, EEA1, protein
transport; HET: GTP; 2.03A {Homo sapiens}
Length = 34
Score = 25.5 bits (55), Expect = 4.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 44 CPICNKSYPGARNMRKHLRLVHD 66
CP C KS A + KH VHD
Sbjct: 8 CPQCMKSLGSADELFKHYEAVHD 30
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.2 bits (57), Expect = 4.3
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 76 CKKTFRNKATFQKHMQRAHVGLKISVSKH-FEC--NYCHAKFSNKSLLSDHISSH 127
C ++ + Q+H+ + HV C C + + + +HI++
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 4.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 339 DKFHLCKVCGAKI--KGSLKQHMITHTGE 365
K HLC +CG K KG+LK H + HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.2 bits (54), Expect = 4.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 40 KTKTCPICNKSYPGARNMRKHLRLVHDKNS 69
++ +CP+C KS+ R ++ H++ H + S
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEVS 37
Score = 25.2 bits (54), Expect = 6.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 125 SSHTGLKNYKCHVCDKAYSCRKALKTH 151
SS + ++Y C VC+K++S + +K+H
Sbjct: 2 SSGSSGRSYSCPVCEKSFSEDRLIKSH 28
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 28.5 bits (63), Expect = 5.2
Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 4/75 (5%)
Query: 134 KCHVCDKAYSCRKALKTHTLLHEQEKVIKSSKKE----FIIDTGDCTLDEWNDFIKRRVT 189
K + + LK H +K KK + + E D
Sbjct: 150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNV 209
Query: 190 VCPKCNRDYRNPRNM 204
P D P +
Sbjct: 210 KSPITGNDLSPPVSF 224
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.0 bits (55), Expect = 5.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 103 KHFECNYCHAKFSNKSLLSDHISSHTGLK 131
+ F C C F+ + L H SHT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 6.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 131 KNYKCHVCDKAYSCRKALKTHTLLHEQEK 159
+++ C VC +A++ ++ LK H H EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 27.9 bits (63), Expect = 7.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 186 RRVTVCPKCNRDYRNPRNMRKHLR-RVHTSVRKY---GCDECG 224
R + CP C Y + RK + + Y GC +C
Sbjct: 304 RTL--CPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCN 344
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 216 RKYGCDECGKMLKSRDSLNTHKKIQH 241
+ Y CD CGK K+R L+ H H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSH 31
Score = 24.7 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 252 YECDYCGAKYPNKYTLSDHIS 272
Y CD CG +Y N+ LS H +
Sbjct: 8 YACDICGKRYKNRPGLSYHYA 28
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.8 bits (53), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 314 FKCDLCDKEFFEKKKLNKHKNWAHGDK 340
F C+ CD F E+ L +H H DK
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTHSDK 37
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.3 bits (52), Expect = 7.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 314 FKCDLCDKEFFEKKKLNKHK 333
+KC LC++ F EK L++H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQ 21
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 27.5 bits (60), Expect = 9.5
Identities = 14/119 (11%), Positives = 39/119 (32%), Gaps = 1/119 (0%)
Query: 179 EWNDFIKRRVTVCPKCNRDYRNPRNMRKHLRRVHTSVRKYGCDECGKMLKSRDSLNTHKK 238
EWN + ++ P + + RN++ ++ ++ + R++L K
Sbjct: 387 EWNKLQSVK-SIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGK 445
Query: 239 IQHEGKKVKVKYEYECDYCGAKYPNKYTLSDHISGHTGIPNHICKICNKGYACAASLKI 297
+ K + + C C + + +++ + H K + +
Sbjct: 446 EIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVV 504
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.436
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,859,765
Number of extensions: 339083
Number of successful extensions: 3328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2739
Number of HSP's successfully gapped: 1247
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.7 bits)