BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4691
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1
SV=2
Length = 1064
Score = 327 bits (837), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 196/434 (45%), Positives = 249/434 (57%), Gaps = 89/434 (20%)
Query: 26 NVSSQGYLVQKKEKRPN------SEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFE 79
N + +GY++QK+E +P+ +ED I+ EFHP + QH P EFE
Sbjct: 241 NFNGKGYIIQKREAKPSLDADKPAED-ILTYEEFHPFLFS---------QHLQCPYIEFE 290
Query: 80 SFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAEL 139
SF AVDEF+S E KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K EL
Sbjct: 291 SFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGEL 350
Query: 140 IINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLL 199
I N + VD AI +R +ANQ+ W +I VK+AQ DPVA IK+LKL NH+T+LL
Sbjct: 351 IEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLL 410
Query: 200 R----VHKERSNIKDSWVLHHDNADPFADSSETK----------KPSLVDVDLDLSAYAN 245
R + +E D+ + + D P + K KP LVDVDL LSAYAN
Sbjct: 411 RNPYLLSEEEDGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYAN 470
Query: 246 AKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYW 305
AK+++D KR AAKK Q+T+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF W
Sbjct: 471 AKKYYDHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLW 530
Query: 306 FISSENYL---GNVAWDAKVVTNAW------WVKADQVSKTA-----PTG---------- 341
FISSENYL G +++ + +V AD T+ PTG
Sbjct: 531 FISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTE 590
Query: 342 -----------------------------------EFLTTGSFMIRGKKNFFPPCQLAMG 366
E+LTTGSFMIRGKKNF PP L MG
Sbjct: 591 AGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMG 650
Query: 367 ISFLFKLEESSISR 380
SFLFK++ES + R
Sbjct: 651 FSFLFKVDESCVWR 664
>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1
SV=4
Length = 1076
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 195/435 (44%), Positives = 246/435 (56%), Gaps = 89/435 (20%)
Query: 26 NVSSQGYLVQKKEKRPNSE-----DYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFES 80
N S +GY++QK+E +P+ E + I+ EFHP + QH P EFES
Sbjct: 241 NFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFS---------QHSQCPYIEFES 291
Query: 81 FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELI 140
F AVDEF+S E KIDLKA+QQE+ ALKKL+NV++DHE RL AL+Q Q +DK K ELI
Sbjct: 292 FDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELI 351
Query: 141 INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
N + VD AI +R +ANQ+ W +I VK+AQ DPVAS IK+LKL NH+T+LLR
Sbjct: 352 EMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLR 411
Query: 201 ----------------VHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYA 244
V+ E++ + + + KP LVDVDL LSAYA
Sbjct: 412 NPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYA 471
Query: 245 NAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFY 304
NAK+++D KR AAKK QKT+++ EKA KSAEKKTKQTLK+VQT+T+I KARKVYWFEKF
Sbjct: 472 NAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFL 531
Query: 305 WFISSENYL---GNVAWDAKVVTNAW------WVKADQVSKTA-----PTG--------- 341
WFISSENYL G +++ + +V AD T+ PTG
Sbjct: 532 WFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLT 591
Query: 342 ------------------------------------EFLTTGSFMIRGKKNFFPPCQLAM 365
E+LTTGSFMIRGKKNF PP L M
Sbjct: 592 EAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMM 651
Query: 366 GISFLFKLEESSISR 380
G SFLFK++ES + R
Sbjct: 652 GFSFLFKVDESCVWR 666
>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila
melanogaster GN=Clbn PE=1 SV=2
Length = 992
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 185/414 (44%), Positives = 241/414 (58%), Gaps = 86/414 (20%)
Query: 29 SQGYLVQKKEKRP---NSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAV 85
S+GY++Q KE++P + ++ N+EFHP + Q + F FESF AV
Sbjct: 276 SKGYIIQVKEEKPTENGTVEFFFRNIEFHPYLFI---------QFKNFEKATFESFMEAV 326
Query: 86 DEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQE 145
DEF+ST ES KID+K +QQER+ALKKL NVK DH RL L + Q VD++KAELI +NQ
Sbjct: 327 DEFYSTQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTKVQDVDRKKAELITSNQS 386
Query: 146 SVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKER 205
VD AI A++ IA+QLSW DI VK+AQ + D VAS IKQLKL NHI+L+L +
Sbjct: 387 LVDNAIRAVQSAIASQLSWPDIHELVKEAQANGDAVASSIKQLKLETNHISLMLSDPYDN 446
Query: 206 SNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQ 265
D + + ++VDVDL LSA+ANA+R++D+KRSAA+K++KT+
Sbjct: 447 DE---------------DDDLKDPEVTVVDVDLALSAWANARRYYDMKRSAAQKEKKTVD 491
Query: 266 STEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAK---- 321
+++KALKSAE+KT+QTLK+V+T++NI KARKV+WFEKFYWFISSENYL DA+
Sbjct: 492 ASQKALKSAERKTQQTLKEVRTISNIVKARKVFWFEKFYWFISSENYLVIGGRDAQQNEL 551
Query: 322 ----------VVTNAWWVKADQVSKTAPTG------------------------------ 341
+ +A A V PTG
Sbjct: 552 IVKRYMRPKDIYVHAEIQGASSVIIQNPTGEEIPPKTLLEAGSMAISYSVAWDAKVVTNS 611
Query: 342 ---------------EFLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
E+L TGSFMIRGKKNF P C L MG+S LFKLE+S I R
Sbjct: 612 YWVTSDQVSKTAPTGEYLATGSFMIRGKKNFLPSCHLTMGLSLLFKLEDSFIER 665
>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2
Length = 1021
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 191/398 (47%), Gaps = 77/398 (19%)
Query: 52 EFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKK 111
+FHP QP R+ FP ++ VDEFFS+ E+ K+ +A + A ++
Sbjct: 315 DFHP--FQPLQLVQANRKCMEFP-----TYNECVDEFFSSIEAQKLKKRAHDRLATAERR 367
Query: 112 LENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARV 171
LE+ K D +L +L+ Q +A+ I N E V+A I I + + W DIE ++
Sbjct: 368 LESAKEDQARKLQSLQDAQATCALRAQAIEMNPELVEAIISYINSLLNQGMDWLDIE-KL 426
Query: 172 KQAQRHNDPVASIIK-QLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKK 230
Q+Q+ PVA+ I+ LKL N +T+ L + N +S D+ D D ++ K+
Sbjct: 427 IQSQKRRSPVAAAIQIPLKLIKNAVTVFLPNPESVDNSDESSETSDDDLDDSDDDNKVKE 486
Query: 231 PSL------VDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKD 284
+ V++DL L A+ANA++ ++L+R A K+ KT ++ KALKS ++K +Q LK
Sbjct: 487 GKVSSKFIAVELDLSLGAFANARKQYELRREALIKETKTAEAASKALKSTQRKIEQDLKR 546
Query: 285 VQT--MTNINKARKVYWFEKFYWFISSENYLGNVAWDAK--------------------- 321
T I RK ++FEKF+WFISSE YL DA+
Sbjct: 547 STTADTQRILLGRKTFFFEKFHWFISSEGYLVLGGRDAQQNELLFQKYCNTGDIFVCADL 606
Query: 322 ------VVTN------------------------AW--------W-VKADQVSKTAPTGE 342
+V N AW W V+ D+VSK APTGE
Sbjct: 607 PKSSIIIVKNKNPHDPIPPNTLQQAGSLALASSKAWDSKTVISAWWVRIDEVSKLAPTGE 666
Query: 343 FLTTGSFMIRGKKNFFPPCQLAMGISFLFKLEESSISR 380
L TGSF IR KKN+ PP L MG L++L+E S R
Sbjct: 667 ILPTGSFAIRAKKNYLPPTVLIMGYGILWQLDEKSSER 704
>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1
Length = 1038
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 197/449 (43%), Gaps = 120/449 (26%)
Query: 30 QGYLVQKKEKRPNSEDYI----VANMEF-----HPM--ILQPGSTPSVMRQHQGFPIQEF 78
+GY++ K+ +E+YI A++EF HP + G T S I E
Sbjct: 282 KGYILAKR-----NENYISEKDTADLEFIYDTFHPFKPYINGGDTDSSC-------IIEV 329
Query: 79 ES-FAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKA 137
E + +D+FFST ES K L+ QE A KK+++ + +++ ++ AL Q +++ K
Sbjct: 330 EGPYNRTLDKFFSTIESSKYALRIQNQESQAQKKIDDARAENDRKIQALLDVQELNERKG 389
Query: 138 ELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNI--NHI 195
LII N ++ LA++ I Q+ W IE +K Q+ + +A ++ L LN+ N I
Sbjct: 390 HLIIENAPLIEEVKLAVQGLIDQQMDWNTIEKLIKSEQKKGNRIAQLL-NLPLNLKQNKI 448
Query: 196 TLLLRVHKERSNIKDSWVLHHDNADPFADSS--------------ETKKPSL-------- 233
++ L + + N DN + E S+
Sbjct: 449 SVKLDLSSKELNTSSD----EDNESEGNTTDSSSDSDSEDMESSKERSTKSMKRKSNEKI 504
Query: 234 -VDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKT----KQTLKDVQTM 288
V +DL LSAYANA +F++K+++A+KQ+K ++ KA+K+ E K K+ LKD ++
Sbjct: 505 NVTIDLGLSAYANATEYFNIKKTSAQKQKKVEKNVGKAMKNIEVKIDQQLKKKLKDSHSV 564
Query: 289 TNINKARKVYWFEKFYWFISSENYL---------------GNVAWDAKVVTNAW----WV 329
+ K R Y+FEK+ WFISSE +L + D ++N++ W+
Sbjct: 565 --LKKIRTPYFFEKYSWFISSEGFLVMMGKSPAETDQIYSKYIEDDDIYMSNSFNSHVWI 622
Query: 330 KADQVSKTAPT---------------------------------------GEFLTTGSFM 350
K + ++ P L G+F
Sbjct: 623 KNPEKTEVPPNTLMQAGILCMSSSEAWSKKISSSPWWCFAKNVSKFDGSDNSILPEGAFR 682
Query: 351 IRGK--KNFFPPCQLAMGISFLFKLEESS 377
++ + +N PP QL MG FL+K++ S
Sbjct: 683 LKNENDQNHLPPAQLVMGFGFLWKVKTSG 711
>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1625 PE=4 SV=1
Length = 671
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 325 NAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFF--PPCQLAMGI 367
+ +WVK +Q+SKTA +GE+L G+F+IRG+++++ P +L +G+
Sbjct: 558 DTYWVKPEQISKTAESGEYLKRGAFVIRGERHYYRNTPLELGVGV 602
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 41/253 (16%)
Query: 63 TPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETR 122
P +++++G + + SF AVD++F+ + + K + +++ EN+ R
Sbjct: 259 VPIDLKKYKGLEKKYYNSFLEAVDDYFAKFLTKVVVKKEKSKIEKEIERQENILRRQLET 318
Query: 123 LSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVA 182
L ++ ++ K +LI N + V+ + AIRQ ++ W AR+K+ R N
Sbjct: 319 LKKYKEDAEKNQIKGDLIYANYQIVEELLNAIRQ-AREKMDW----ARIKKIIRENK--- 370
Query: 183 SIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSA 242
H L L + + + L + D + V +D+ +A
Sbjct: 371 ----------EHPILGLIENINENIGEIIIRLKSEVDDKVIEER-------VSLDIRKNA 413
Query: 243 YANAKRFFDLKRSAAKKQQKTIQSTEKALK----------SAEKKTKQTLKDVQTMTNIN 292
+ NA+ +++ AKK + I+ E A++ ++ + + +Q I
Sbjct: 414 FENAESYYE----KAKKLRNKIEGIENAIELTKKKIEELKKKGEEELKEKESMQMKKKIR 469
Query: 293 KARKVYWFEKFYW 305
K RK W+EKF W
Sbjct: 470 KERK--WYEKFKW 480
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 13 KCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQG 72
+ GPT+ + + NLN S+ + +K K N ++VA ++ P QPG T S+ G
Sbjct: 646 QAGPTVSIFIKNLNFSTTSQQLTEKFKPFNG--FVVAQVKTKPDPKQPGKTLSM-----G 698
Query: 73 FPIQEF---ESFAAAVDEFFSTA-ESHKIDLK 100
F EF E A + T + HK+ LK
Sbjct: 699 FGFAEFKTKEQANAVISAMEGTILDGHKLQLK 730
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,306,408
Number of Sequences: 539616
Number of extensions: 4999705
Number of successful extensions: 20061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 19871
Number of HSP's gapped (non-prelim): 376
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)