Query psy4691
Match_columns 380
No_of_seqs 214 out of 454
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:26:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3doa_A Fibrinogen binding prot 96.1 0.0048 1.6E-07 59.3 4.8 34 52-95 250-283 (288)
2 1fxk_C Protein (prefoldin); ar 70.8 42 0.0014 27.5 12.6 22 243-264 86-107 (133)
3 1gmj_A ATPase inhibitor; coile 65.9 15 0.0005 28.8 6.1 23 110-132 47-69 (84)
4 2l5g_B Putative uncharacterize 52.0 36 0.0012 23.1 5.3 28 102-129 11-38 (42)
5 2lw1_A ABC transporter ATP-bin 49.6 61 0.0021 24.9 7.3 27 104-130 19-45 (89)
6 1gmj_A ATPase inhibitor; coile 46.8 90 0.0031 24.3 7.7 48 81-128 25-79 (84)
7 2zdi_C Prefoldin subunit alpha 40.0 1.6E+02 0.0056 24.5 11.4 23 243-265 96-118 (151)
8 1deq_A Fibrinogen (alpha chain 38.1 96 0.0033 30.6 8.1 53 104-170 132-184 (390)
9 2xzr_A Immunoglobulin-binding 37.8 1.6E+02 0.0053 23.6 10.2 53 106-158 54-106 (114)
10 3ub6_A Chemoreceptor TLPB; hom 37.4 1.9E+02 0.0065 24.8 9.4 27 339-370 129-155 (181)
11 4e81_A Chaperone protein DNAK; 37.2 1.7E+02 0.0058 26.2 9.4 70 112-185 144-214 (219)
12 4fye_A SIDF, inhibitor of grow 35.6 2.4E+02 0.0081 27.9 10.4 72 81-154 502-575 (761)
13 3caz_A BAR protein; thermo-aci 32.3 2.2E+02 0.0075 25.6 8.9 23 80-102 102-124 (294)
14 2zdi_C Prefoldin subunit alpha 28.4 1.5E+02 0.0051 24.7 7.0 7 80-86 95-101 (151)
15 3hnw_A Uncharacterized protein 26.1 2.9E+02 0.0098 23.1 10.4 10 84-93 66-75 (138)
16 3teq_A Stromal interaction mol 25.8 94 0.0032 25.0 4.8 67 110-182 17-99 (101)
17 1fxk_C Protein (prefoldin); ar 24.9 2.6E+02 0.0088 22.5 7.7 8 80-87 85-92 (133)
18 2l5g_B Putative uncharacterize 23.3 1.8E+02 0.0061 19.7 5.3 31 106-136 8-38 (42)
19 1vh6_A Flagellar protein FLIS; 23.2 3.3E+02 0.011 22.8 9.1 68 104-174 51-127 (145)
20 3uo3_A J-type CO-chaperone JAC 20.6 2.6E+02 0.0089 24.3 7.2 37 136-173 123-159 (181)
21 1ykh_B RNA polymerase II holoe 20.6 2.5E+02 0.0085 23.2 6.7 41 115-158 86-126 (132)
22 3ter_A Mammalian stromal inter 20.5 2.6E+02 0.009 23.6 6.8 68 109-182 47-132 (136)
No 1
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=96.08 E-value=0.0048 Score=59.26 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=26.3
Q ss_pred cceecccCCCCCCcccccccCCcccccCCHHHHHHHHhcchhhh
Q psy4691 52 EFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESH 95 (380)
Q Consensus 52 ~F~P~~~~~~~~P~~l~~~~~~~~~~f~SFNeAlDeFFs~~e~~ 95 (380)
+|+||. |.+|.+ +.+.|+|||+|||+||+.++..
T Consensus 250 ~f~~~~---------l~~~~~-~~~~f~s~s~~Ld~yy~~k~~~ 283 (288)
T 3doa_A 250 DFYFIK---------LNQFND-DTVTYDSLNDLLDRFYDARGER 283 (288)
T ss_dssp CEESSC---------CTTCCS-CCEECSSHHHHHHHHTCC----
T ss_pred EEEEEe---------chhccC-CceeCCCHHHHHHHHHHHhhhh
Confidence 788886 888876 6778999999999999998754
No 2
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=70.84 E-value=42 Score=27.48 Aligned_cols=22 Identities=5% Similarity=0.199 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4691 243 YANAKRFFDLKRSAAKKQQKTI 264 (380)
Q Consensus 243 ~~NA~~yy~~~K~~~~K~~kt~ 264 (380)
...|..|+++|.+...+..+++
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l 107 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKM 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999977665553333
No 3
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=65.87 E-value=15 Score=28.79 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 110 KKLENVKRDHETRLSALEQTQLV 132 (380)
Q Consensus 110 kKLek~~~~qekrI~~le~~~E~ 132 (380)
++++..+..+.+.|+.++++.+.
T Consensus 47 kkl~~el~~h~~ei~~le~~i~r 69 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544433
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.01 E-value=36 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 102 VQQERDALKKLENVKRDHETRLSALEQT 129 (380)
Q Consensus 102 ~~~~~~~ikKLek~~~~qekrI~~le~~ 129 (380)
.+++..++.|.+..+.++++++.+|++.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888888888888888888744
No 5
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.56 E-value=61 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 104 QERDALKKLENVKRDHETRLSALEQTQ 130 (380)
Q Consensus 104 ~~~~~ikKLek~~~~qekrI~~le~~~ 130 (380)
+++.++..|+..|..++.+|..++...
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777778888887777554
No 6
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.82 E-value=90 Score=24.29 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHh-cchhhhhHhH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 81 FAAAVDEFF-STAESHKIDL---KAV---QQERDALKKLENVKRDHETRLSALEQ 128 (380)
Q Consensus 81 FNeAlDeFF-s~~e~~k~~~---k~~---~~~~~~ikKLek~~~~qekrI~~le~ 128 (380)
--.|.+++| ...+...+.. +.. ..-...+++|++.++.+.++|..|+.
T Consensus 25 rEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 25 REQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 336666554 4444443222 211 23345566666666666676666653
No 7
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=39.96 E-value=1.6e+02 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 243 YANAKRFFDLKRSAAKKQQKTIQ 265 (380)
Q Consensus 243 ~~NA~~yy~~~K~~~~K~~kt~~ 265 (380)
..-|..|+++|.....+..++++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~ 118 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQ 118 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999776655543333
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.08 E-value=96 Score=30.65 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy4691 104 QERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEAR 170 (380)
Q Consensus 104 ~~~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~ 170 (380)
++. .|+.|+..+++|...|+.|+...+.+ +..|....+-+++-.+|.+.-+++
T Consensus 132 q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c-------------~~~C~~sC~~~l~~~vD~e~ye~q 184 (390)
T 1deq_A 132 QVQ-RINLLQKNVRDQLVDMKRLEVDIDIK-------------IRSCKGSCSRALEHKVDLEDYKNQ 184 (390)
T ss_pred HhH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------hcccccccchhhhhhccHHHHHHH
Confidence 444 56666666666666666666444322 223334444555666665554443
No 9
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.77 E-value=1.6e+02 Score=23.62 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4691 106 RDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDI 158 (380)
Q Consensus 106 ~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~ 158 (380)
...+.+-..+++.|+++|.+-.+++....-+.+.|.+-.|.++.-+..+..++
T Consensus 54 Tr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 54 TRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455566677777777777765655555554445555555666555554443
No 10
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=37.41 E-value=1.9e+02 Score=24.78 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=18.2
Q ss_pred CCCcccCCceeEEecccccCCCCCceeEEEEE
Q psy4691 339 PTGEFLTTGSFMIRGKKNFFPPCQLAMGISFL 370 (380)
Q Consensus 339 psGeyL~~GsFmIrGkKnyl~p~~L~mg~G~l 370 (380)
.+++..||=||+. ++||-...+|.|+.
T Consensus 129 ~~~~~~~Klsyv~-----~~~~w~W~IgtG~y 155 (181)
T 3ub6_A 129 DGGVPEKKFAYSH-----YDEVSQMVIAATSY 155 (181)
T ss_dssp TTSCCEEEEEEEE-----EETTTTEEEEEEEE
T ss_pred CCCCccceEEEEE-----EECCCCEEEEEeeE
Confidence 3444456655554 57888899999885
No 11
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=37.25 E-value=1.7e+02 Score=26.16 Aligned_cols=70 Identities=11% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcCCcccccc
Q psy4691 112 LENVKRDHETRLSALEQTQLVDKEKAELI-INNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASII 185 (380)
Q Consensus 112 Lek~~~~qekrI~~le~~~E~~~~kgeLI-~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~i~~~~~~g~pva~~I 185 (380)
....++..+.-+-.+++..+. .++.| ......|+.++..+..++..+ +-.+|...+++-++.++|++...
T Consensus 144 ~~e~kn~le~~i~~~~~~l~~---~~~~l~~~~k~~i~~~l~~~~~~L~~~-~~~~i~~~~~~L~~~~~~i~~~~ 214 (219)
T 4e81_A 144 LVQTRNQGDHLLHSTRKQVEE---AGDKLPADDKTAIESALTALETALKGE-DKAAIEAKMQELAQVSQKLMEIA 214 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HGGGSCHHHHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhhCCHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433322 33333 445566778888888888775 78888888888888888877643
No 12
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=35.64 E-value=2.4e+02 Score=27.89 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHhcchhhh--hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy4691 81 FAAAVDEFFSTAESH--KIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAI 154 (380)
Q Consensus 81 FNeAlDeFFs~~e~~--k~~~k~~~~~~~~ikKLek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v 154 (380)
|-+||=.||.....- +-.+...++....+.-.++.++.|+..|=+|..+.+.+++ | ..+.|-.+|.++++-+
T Consensus 502 yrealfsyfeeyqkgegkwdqakldqlknqvdgyeksikkqesaiyelhnqidalrk-a-yytehkgqinkalqel 575 (761)
T 4fye_A 502 YREALFSYFEEYQKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRK-A-YYTEHKGQINKALQEL 575 (761)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHhhhhhHHHHHHHH
Confidence 667777787765433 4455566678888889999999999999999877766643 2 2234444454444433
No 13
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=32.26 E-value=2.2e+02 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=14.5
Q ss_pred CHHHHHHHHhcchhhhhHhHHHH
Q psy4691 80 SFAAAVDEFFSTAESHKIDLKAV 102 (380)
Q Consensus 80 SFNeAlDeFFs~~e~~k~~~k~~ 102 (380)
-.-+-+..||..++.-+.+.+..
T Consensus 102 rllekiqkyfQ~IEtlK~ql~nf 124 (294)
T 3caz_A 102 RLLEKIQKYRQEIEEIKKEYKET 124 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34466778888888665544433
No 14
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.38 E-value=1.5e+02 Score=24.75 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=4.2
Q ss_pred CHHHHHH
Q psy4691 80 SFAAAVD 86 (380)
Q Consensus 80 SFNeAlD 86 (380)
|..+|++
T Consensus 95 ~~~eA~~ 101 (151)
T 2zdi_C 95 SIDEAIS 101 (151)
T ss_dssp EHHHHHH
T ss_pred cHHHHHH
Confidence 4666665
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.07 E-value=2.9e+02 Score=23.08 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=4.6
Q ss_pred HHHHHhcchh
Q psy4691 84 AVDEFFSTAE 93 (380)
Q Consensus 84 AlDeFFs~~e 93 (380)
.+|+||....
T Consensus 66 iadEl~k~~~ 75 (138)
T 3hnw_A 66 IADDYFKAKK 75 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455554443
No 16
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=25.82 E-value=94 Score=25.01 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhH---HHHHHHHHHHHHH--------HhcCCChHHHHHHHHH
Q psy4691 110 KKLENVKRDHETRLSALEQTQLVDKEK-----AELIINNQ---ESVDAAILAIRQD--------IANQLSWEDIEARVKQ 173 (380)
Q Consensus 110 kKLek~~~~qekrI~~le~~~E~~~~k-----geLI~aN~---~~Ve~~i~~v~~~--------~~~~~~W~~I~~~i~~ 173 (380)
+-+..++..-++++..+.+..|+.+++ |-+-.+|- +.||.-|-..+.| .+..-.|..|+.+.
T Consensus 17 q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l~-- 94 (101)
T 3teq_A 17 QYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEILT-- 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 444555555555566666566666555 33333332 2222222222222 23344699999886
Q ss_pred HhhcCCccc
Q psy4691 174 AQRHNDPVA 182 (380)
Q Consensus 174 ~~~~g~pva 182 (380)
|-||.
T Consensus 95 ----gf~iv 99 (101)
T 3teq_A 95 ----GFQIV 99 (101)
T ss_dssp ----CCCCC
T ss_pred ----CCccc
Confidence 66654
No 17
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.87 E-value=2.6e+02 Score=22.55 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=5.4
Q ss_pred CHHHHHHH
Q psy4691 80 SFAAAVDE 87 (380)
Q Consensus 80 SFNeAlDe 87 (380)
|+.+|++.
T Consensus 85 ~~~eA~~~ 92 (133)
T 1fxk_C 85 NFEDAMES 92 (133)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 57777773
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.30 E-value=1.8e+02 Score=19.71 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 106 RDALKKLENVKRDHETRLSALEQTQLVDKEK 136 (380)
Q Consensus 106 ~~~ikKLek~~~~qekrI~~le~~~E~~~~k 136 (380)
-+.+.|+.+-+..-+++|..|+..+..+...
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888776666543
No 19
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=23.23 E-value=3.3e+02 Score=22.80 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHH-HHHHHHHHhH----HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy4691 104 QERDALKKLENVKRDHETRLSA---LEQTQ-LVDK-EKAELIINNQ----ESVDAAILAIRQDIANQLSWEDIEARVKQA 174 (380)
Q Consensus 104 ~~~~~ikKLek~~~~qekrI~~---le~~~-E~~~-~kgeLI~aN~----~~Ve~~i~~v~~~~~~~~~W~~I~~~i~~~ 174 (380)
.....+.|...++..+...+.- .-... ..|. ..-.|+.+|+ ..|++++..+..+++ .|.+|....+.+
T Consensus 51 ~k~~~i~KA~~Ii~eL~~sLd~egeiA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~Lre---aW~~i~~~~~~~ 127 (145)
T 1vh6_A 51 RKNENLIKAQNIIQELNFTLNRNIELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRD---AWKQAIQSERKD 127 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHHHhhcc
Confidence 3444556666666555555431 11011 1111 1245666665 478888888888876 499987665443
No 20
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=20.62 E-value=2.6e+02 Score=24.26 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=29.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q psy4691 136 KAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQ 173 (380)
Q Consensus 136 kgeLI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~i~~ 173 (380)
...|...|-..++.+...+..+++.+ +|......+..
T Consensus 123 l~~l~~~~~~~~~~~~~~l~~~~~~~-d~~~A~~~~~k 159 (181)
T 3uo3_A 123 VKLLEKQNKERIQDIEAQLGQCYNDK-DYAAAVKLTVE 159 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 45667778888999999999999876 99988776644
No 21
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.55 E-value=2.5e+02 Score=23.24 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4691 115 VKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDI 158 (380)
Q Consensus 115 ~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~ 158 (380)
.-++|.++|.+|+ ++++..+.-+..=...-+..+..|++++
T Consensus 86 see~Q~~ri~~L~---~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 86 SAEEQLRKIDMLQ---KKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777766 3344555555555555555555555554
No 22
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.49 E-value=2.6e+02 Score=23.55 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HhHHHHHHHHHHHHHHH--------hcCCChHHHHHH
Q psy4691 109 LKKLENVKRDHETRLSALEQTQLVDKEK-----AELII-----NNQESVDAAILAIRQDI--------ANQLSWEDIEAR 170 (380)
Q Consensus 109 ikKLek~~~~qekrI~~le~~~E~~~~k-----geLI~-----aN~~~Ve~~i~~v~~~~--------~~~~~W~~I~~~ 170 (380)
.+-+..++..-++++..+.+..++.+++ |-+-. ..++.|+.-|-..+.|+ +....|..|+.+
T Consensus 47 ~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 47 MAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666665 11111 22344444444333333 233459999988
Q ss_pred HHHHhhcCCccc
Q psy4691 171 VKQAQRHNDPVA 182 (380)
Q Consensus 171 i~~~~~~g~pva 182 (380)
. |-||.
T Consensus 127 c------gF~iv 132 (136)
T 3ter_A 127 C------GFPLL 132 (136)
T ss_dssp H------TSCCC
T ss_pred h------CCcCc
Confidence 6 66654
Done!