Query psy4691
Match_columns 380
No_of_seqs 214 out of 454
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 23:26:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 45.8 56 0.0041 24.6 16.4 35 243-280 86-120 (133)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 43.0 40 0.0029 25.5 7.7 7 80-86 85-91 (133)
3 d1u5pa1 a.7.1.1 (A:1662-1771) 33.1 58 0.0042 23.0 6.8 57 116-175 44-101 (110)
4 d1quua1 a.7.1.1 (A:1-124) alph 31.4 86 0.0063 22.5 8.5 57 109-175 57-114 (124)
5 d1fpoa2 a.23.1.1 (A:77-171) HS 27.7 98 0.0072 22.0 7.8 37 135-172 37-73 (95)
6 d1zyma1 a.60.10.1 (A:22-144) E 24.3 1.3E+02 0.0094 22.2 7.9 55 106-160 16-74 (123)
7 d1s35a2 a.7.1.1 (A:1169-1273) 23.0 1.1E+02 0.0083 21.1 8.5 61 112-175 38-99 (105)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 21.2 1.1E+02 0.008 23.4 6.6 43 114-159 84-126 (129)
9 d2clyb1 f.53.1.1 (B:4-123) ATP 19.3 20 0.0015 27.7 1.6 34 100-133 85-118 (120)
10 d2piha1 a.281.1.1 (A:2-124) Un 18.6 1.2E+02 0.0088 22.4 6.3 84 76-160 23-110 (123)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=45.79 E-value=56 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 243 YANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQ 280 (380)
Q Consensus 243 ~~NA~~yy~~~K~~~~K~~kt~~~~~kalk~~e~k~~~ 280 (380)
...|..|+++|.+... +.++.....++.++.++.+
T Consensus 86 ~~eA~~~l~~ri~~l~---~~~~~l~~~~~~~~~~i~~ 120 (133)
T d1fxkc_ 86 FEDAMESIKSQKNELE---STLQKMGENLRAITDIMMK 120 (133)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3679999999965544 3344444444444444443
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.98 E-value=40 Score=25.47 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=3.9
Q ss_pred CHHHHHH
Q psy4691 80 SFAAAVD 86 (380)
Q Consensus 80 SFNeAlD 86 (380)
|..+|++
T Consensus 85 ~~~eA~~ 91 (133)
T d1fxkc_ 85 NFEDAME 91 (133)
T ss_dssp EHHHHHH
T ss_pred cHHHHHH
Confidence 4556655
No 3
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.12 E-value=58 Score=22.99 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q psy4691 116 KRDHETRLSALEQTQLVDKEKAE-LIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQ 175 (380)
Q Consensus 116 ~~~qekrI~~le~~~E~~~~kge-LI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~i~~~~ 175 (380)
.+..+..|...+...+.....|+ ||..+.+..+.+...+..+-. .|+.+...+...+
T Consensus 44 h~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~---~w~~l~~~~~~R~ 101 (110)
T d1u5pa1 44 HQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETING---RFQRIKSMAAARR 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34444444444444444445555 455555555555555555433 4999988876554
No 4
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.40 E-value=86 Score=22.54 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q psy4691 109 LKKLENVKRDHETRLSALEQTQLVDKEKAE-LIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQ 175 (380)
Q Consensus 109 ikKLek~~~~qekrI~~le~~~E~~~~kge-LI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~i~~~~ 175 (380)
.+-+++-+..++.++..+. ..|+ ||..+.+..+.+-..+..+-. .|..+...+...+
T Consensus 57 h~~~~~~i~~~~~~v~~l~-------~~~~~L~~~~~~~~~~i~~~~~~l~~---rW~~L~~~~~~R~ 114 (124)
T d1quua1 57 HEAFESDLAAHQDRVEQIA-------AIAQELNELDYHDAVNVNDRCQKICD---QWDRLGTLTQKRR 114 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTCTTHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH-------HHHHHHHhhccccHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444444444444544444 4444 555554555555555444332 5999998876554
No 5
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=27.74 E-value=98 Score=22.04 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy4691 135 EKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVK 172 (380)
Q Consensus 135 ~kgeLI~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~i~ 172 (380)
....+...+-..+..++..+..+++.+ +|+.....+.
T Consensus 37 ~l~~l~~ei~~~~~~~~~~l~~~~~~~-d~~~A~~~~~ 73 (95)
T d1fpoa2 37 RLESFIKRVKKMFDTRHQLMVEQLDNE-TWDAAADTCR 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHH
Confidence 344455555555666666666666654 7776665553
No 6
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=24.28 E-value=1.3e+02 Score=22.24 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHH--HHHHHHHHHHhc
Q psy4691 106 RDALKKLENVKRDHETRLSALEQTQLVD--KEKAELIINNQESVD--AAILAIRQDIAN 160 (380)
Q Consensus 106 ~~~ikKLek~~~~qekrI~~le~~~E~~--~~kgeLI~aN~~~Ve--~~i~~v~~~~~~ 160 (380)
..++.|+...+..-...+..+.+..... ...+.++.+|+..++ ..+..|...+.+
T Consensus 16 ~~E~~rl~~A~~~~~~~L~~l~~~~~~~~~~e~a~If~ah~~iL~D~~l~~~v~~~I~~ 74 (123)
T d1zyma1 16 DQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKD 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHHHHc
Confidence 3455666666666666666665433322 345777788877765 555666666543
No 7
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.05 E-value=1.1e+02 Score=21.13 Aligned_cols=61 Identities=7% Similarity=-0.046 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q psy4691 112 LENVKRDHETRLSALEQTQLVDKEKAEL-IINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQ 175 (380)
Q Consensus 112 Lek~~~~qekrI~~le~~~E~~~~kgeL-I~aN~~~Ve~~i~~v~~~~~~~~~W~~I~~~i~~~~ 175 (380)
+-++.+..+..|...+.........|+- |..+-+..+.|...+..+.. .|..+.......+
T Consensus 38 l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~---rw~~l~~~~~~r~ 99 (105)
T d1s35a2 38 GIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIED---RHRKNNEKAQEAS 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3333344444444444444444444443 34444455566555555544 3999988876554
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.18 E-value=1.1e+02 Score=23.40 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4691 114 NVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIA 159 (380)
Q Consensus 114 k~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i~~v~~~~~ 159 (380)
..-+.|.++|.+|+ ++++..+.-+..-...-+..+..|.+++.
T Consensus 84 ~see~Q~~~i~~Le---~E~~~~~~el~~~v~e~e~ll~~i~~~i~ 126 (129)
T d1ykhb1 84 VSAEEQLRKIDMLQ---KKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126 (129)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666 33444444444445555555666655553
No 9
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.28 E-value=20 Score=27.74 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4691 100 KAVQQERDALKKLENVKRDHETRLSALEQTQLVD 133 (380)
Q Consensus 100 k~~~~~~~~ikKLek~~~~qekrI~~le~~~E~~ 133 (380)
....++.+.++.....+..-..||.+|+++.+..
T Consensus 85 ~ida~e~e~~~~~~~~~~~s~~rI~~lekeLe~i 118 (120)
T d2clyb1 85 QVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKM 118 (120)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566677777788888888888888765544
No 10
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=18.64 E-value=1.2e+02 Score=22.37 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=45.1
Q ss_pred cccCCHHHHHHHHhcchhhhhHhHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy4691 76 QEFESFAAAVDEFFSTAESHKIDLKAVQ-QERDALKKL---ENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAI 151 (380)
Q Consensus 76 ~~f~SFNeAlDeFFs~~e~~k~~~k~~~-~~~~~ikKL---ek~~~~qekrI~~le~~~E~~~~kgeLI~aN~~~Ve~~i 151 (380)
.+|..|-.|-.......+.+.+-..-.. +..-...+. ...-.+..+++..+.++...+....+.+.+-. .+..+|
T Consensus 23 ~ey~~~~~a~~~v~~d~ea~~li~~f~~~q~~~q~~q~~g~~~~~~e~~~el~~l~~~l~~np~v~~y~~Ae~-~l~~lL 101 (123)
T d2piha1 23 EEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQM-EVNDLL 101 (123)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHH
Confidence 4566677777776666665532221111 100000111 11124455567777777777767777666655 466777
Q ss_pred HHHHHHHhc
Q psy4691 152 LAIRQDIAN 160 (380)
Q Consensus 152 ~~v~~~~~~ 160 (380)
+.|+..++.
T Consensus 102 ~~V~~~I~~ 110 (123)
T d2piha1 102 QLVAHTISN 110 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777764
Done!