RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4691
(380 letters)
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 59.3 bits (144), Expect = 1e-09
Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 48/235 (20%)
Query: 79 ESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAE 138
+ F A+DE F + ++ + ++ LKKLEN E L LE+ ++K E
Sbjct: 265 KLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGE 324
Query: 139 LIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLL 198
L+ N + ++ + ++R + E + + P + +
Sbjct: 325 LLYANLQLIEEGLKSVRLAD-----FYGNEEIKIELDKSKTPSEN-------AQRYFKKY 372
Query: 199 LRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAK 258
++ + V++D LS A +++ ++A +
Sbjct: 373 KKLKGAK----------------------------VNLDRQLSELKEAIAYYESAKTALE 404
Query: 259 KQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYL 313
K + K+ E+ ++ +++ + K +K WFEKF WF+SS+ +L
Sbjct: 405 KA--------EGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDGFL 451
Score = 48.2 bits (115), Expect = 5e-06
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 317 AWDA-KVVTNAWWVKADQVSKTAPTGEFLTTGSFMIRGKKNFF 358
AW + V + WVK QV K A +GE L G IRGK+++
Sbjct: 513 AWKSGLVPVDYTWVKPVQVPKGAKSGEVLYKGQKTIRGKRDYI 555
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 34.2 bits (79), Expect = 0.14
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 221 PFADSSETKKPSLVD-VDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTK 279
P + +E K D VD + Y N F DLK+ AK +K + +K+L+S KK
Sbjct: 895 PIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAK-LEKKLAKLQKSLESYLKKIS 953
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 33.4 bits (77), Expect = 0.20
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 71 QGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDAL-KKLENVKRDHETRLSALEQT 129
G+ + FES + A+DE++S K + V+Q+R L K++EN E +L LE+
Sbjct: 263 SGYEKRSFESLSEALDEYYSK----KAERDRVKQKRSDLEKRVENELEKLEKKLEKLEK- 317
Query: 130 QLVDKEKAE 138
+L + E AE
Sbjct: 318 ELEEAENAE 326
Score = 29.5 bits (67), Expect = 3.4
Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 34/207 (16%)
Query: 100 KAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILA-----I 154
+A ++ + L++ S L + L EK ES+ A+
Sbjct: 231 EAFKELLNDLEEGNFSPTITPEDFSVLPLSHLSGYEKRS-----FESLSEALDEYYSKKA 285
Query: 155 RQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVL 214
+D Q D+E RV+ + KL L + E + +
Sbjct: 286 ERDRVKQKR-SDLEKRVENELEKL--------EKKLEKLEKELEEAENAENYRLYGELLT 336
Query: 215 HHDNADPFADSS------ETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTE 268
+ A T + + +D S NA++++ KK +K ++
Sbjct: 337 ANLYAIKKGMKEVELPNYYTGEEITIPLDPAKSPSENAQKYY-------KKYKK-LKRAV 388
Query: 269 KALKSAEKKTKQTLKDV-QTMTNINKA 294
+A++ ++TK+ ++ + + A
Sbjct: 389 EAVEEQIEETKEEIEYLESVEAQLENA 415
>gnl|CDD|218452 pfam05130, FlgN, FlgN protein. This family includes the FlgN
protein and export chaperone involved in flagellar
synthesis.
Length = 140
Score = 30.8 bits (70), Expect = 0.55
Identities = 15/113 (13%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 103 QQERDALKKLENV--------KRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAI 154
++E++ALK + K++ +L LE+ + + + + A
Sbjct: 21 EEEQEALKAGDIEALEELTEEKQELLAQLEQLEE-ERQQLLAELGLSPGPAGLSELLAAE 79
Query: 155 RQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSN 207
+++ W++++ +++ Q N+ +++Q + +L+ ++ S
Sbjct: 80 DEELREL--WQELKELLEELQELNERNGRLLEQSLEFNQRLLNILQGARKPSG 130
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 32.3 bits (74), Expect = 0.55
Identities = 27/195 (13%), Positives = 76/195 (38%), Gaps = 12/195 (6%)
Query: 101 AVQQERDA-LKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIA 159
+ ER +++LE + E +++ LE+ +++ E + E + + + + I+
Sbjct: 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
Query: 160 NQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLL-RVHKERSNIKDSWVLHHDN 218
+D+ + ++ + +A + K+L I L R+ + + ++ +
Sbjct: 730 ALR--KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
Query: 219 ADPFADSSETKKPSLVDVDLDLSA----YANAKRFFDLKRSAAKKQQKTIQSTEKALKSA 274
E L + L R + ++ I +TE+ L+
Sbjct: 788 EAQIEQLKE----ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
Query: 275 EKKTKQTLKDVQTMT 289
E++ ++ +D++++
Sbjct: 844 EEQIEELSEDIESLA 858
Score = 30.8 bits (70), Expect = 1.5
Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Query: 79 ESFAAAVDEFFS-TAESHKIDL-KAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEK 136
E E ++ E +++ K + +ER L LE + E +L LE E+
Sbjct: 281 EEIEELQKELYALANEISRLEQQKQILRER--LANLERQLEELEAQLEELESKLDELAEE 338
Query: 137 AELIINNQESVDAAILAIRQDIAN-QLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHI 195
+ E + + ++ ++ + E++E+R+++ + + + S + QL+L I +
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
Query: 196 T---LLLRVHKERSN 207
L ER
Sbjct: 399 NNEIERLEARLERLE 413
Score = 29.6 bits (67), Expect = 3.2
Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 77 EFESFAAAVDEFFSTAESHKIDLKAVQQE----RDALKKLENVKRDHETRLSALEQTQLV 132
E E ++E S E+ + ++++ R L++L R+ E++ S L +
Sbjct: 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
Query: 133 DKEKAELIINNQESVDAAILAIRQDIAN--QLSWEDIEARVKQAQRHNDPVASIIKQLKL 190
+EK + E ++ I +++ ++ L+ E+ EA + + + +K+L+
Sbjct: 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
Query: 191 NINHI 195
I +
Sbjct: 980 KIKEL 984
Score = 29.3 bits (66), Expect = 4.0
Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Query: 76 QEFESFAAAVDEFFST---AESHKIDL-KAVQQERDALKKLENVKRDHETRLSALEQT-Q 130
+E ES A ++E + ES +L + ++ R + +LE + LE +
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
Query: 131 LVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQ--RHNDPVASIIKQL 188
++ + L +E + A +++ +L + E Q + R + + + ++L
Sbjct: 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
Query: 189 KLNINHITLLLRVHKERSNIKDS 211
+ + R + DS
Sbjct: 471 EEAEQALDAAERELAQLQARLDS 493
>gnl|CDD|218265 pfam04787, Pox_H7, Late protein H7. Family of poxvirus late H7
proteins.
Length = 147
Score = 30.4 bits (69), Expect = 0.68
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 236 VDLDLSAYANA----KRFFDLKRSAAKKQQKTIQSTEKALKSAEKK 277
+D D+ Y KRF L ++ K+ K I+ K LK A K
Sbjct: 91 IDDDIDGYIKTSKKLKRFIKLYKTNNNKKNKRIKEAAKKLKIALIK 136
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 31.2 bits (71), Expect = 1.0
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 75 IQEFESFAAAVDEFFSTAESHKIDLKAVQQERDA-LKKLENVKRDHETRLSALEQTQLVD 133
+E E ++ ES DLK + E +A L++LE + E ++ +
Sbjct: 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
Query: 134 KEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQR 176
K K E + ++ + +LS ED++A +++ +
Sbjct: 923 KAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
>gnl|CDD|185183 PRK15283, PRK15283, putative fimbrial subunit StfA; Provisional.
Length = 186
Score = 30.5 bits (68), Expect = 1.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 309 SENYL--GNVAWDAKVVTNAWWVKADQVSKTAPTGEFLTTGSFMI 351
SEN G+VA + + WVK D + T TGEF +T +F I
Sbjct: 139 SENLTMNGSVAAAKQTLNFKAWVKGDSAASTIDTGEFSSTVNFTI 183
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and
biogenesis].
Length = 361
Score = 30.7 bits (70), Expect = 1.3
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 118 DHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVK-QAQR 176
+ E RL +T V E A I S+D LA+ +++A +W + EAR + A+
Sbjct: 176 EDEFRLLPTRRTYKVLPEDAWREIKIAHSLDPRELAVLRELA---AWREREARERDLARN 232
Query: 177 H---NDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKP 231
++ + + + N+ + L + KER + NA +S P
Sbjct: 233 FVLKDEALWELARYTPKNLKELDALGLIPKERRRHGKLLLALLANALASPESDLPPPP 290
>gnl|CDD|219471 pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC5-6 complex. S.
cerevisiae Nse1 forms part of a complex with SMC5-SMC6
This non-structural maintenance of chromosomes (SMC)
complex plays an essential role in genomic stability,
being involved in DNA repair and DNA metabolism. It is
conserved in eukaryotes from yeast to human.
Length = 180
Score = 30.1 bits (68), Expect = 1.3
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 19 HVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQHQGFPIQEF 78
V N +S GY ++K +P+ E Y V + + P + + F +E
Sbjct: 49 FVAEINKRLSPLGYKIKKVRYQPDGERYYV--------YVNTVADP-ISKMATTFSAEEL 99
Query: 79 ESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSALEQTQLVDK 134
E F +D + ++ + AV + D L E +L+ K
Sbjct: 100 EFFKKLIDLIADSEDAEAAIIAAVNETDDIASSAMKKTLPATKELKKSEAEELLQK 155
>gnl|CDD|220470 pfam09920, DUF2150, Uncharacterized protein conserved in archaea
(DUF2150). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 190
Score = 29.6 bits (67), Expect = 2.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 96 KIDLKAVQQER----DALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAI 151
KI + + R +AL +LE+V+ L + + D++K ELI + Q S+ A
Sbjct: 49 KI-IALYENGRISKEEALDELEDVRD------IVLAEVEFDDEDKDELIDSVQTSLVAVF 101
Query: 152 LAIRQDIANQLSWE-DIEARVKQA 174
A + + + DI+ VK A
Sbjct: 102 AAAEEYLEGGFDPDADIKELVKAA 125
>gnl|CDD|217457 pfam03255, ACCA, Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit. Acetyl co-enzyme A carboxylase
carboxyltransferase is composed of an alpha and beta
subunit.
Length = 145
Score = 29.2 bits (66), Expect = 2.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 74 PIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDAL-KKLENVKRDHETRLSALEQTQLV 132
P+ E E A +DE A + +D+ E L KKL+ +KR+ + L+ ++ QL
Sbjct: 8 PLAELE---AKIDELRKLARKNDVDVSD---EIHRLEKKLDKLKREIYSNLTPWQRVQLA 61
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.5 bits (67), Expect = 3.2
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 103 QQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIAN-- 160
+ R + + + KE+ + V + +R ++
Sbjct: 84 RPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRDELKELK 143
Query: 161 QLSWEDIEARVKQAQRHNDPVASIIKQLK 189
L + + + ++Q +R A + K+LK
Sbjct: 144 NLLEDQL-SGLRQVERIPPEFAELYKRLK 171
>gnl|CDD|219083 pfam06548, Kinesin-related, Kinesin-related. This family
represents a region within kinesin-related proteins from
higher plants. Many family members also contain the
pfam00225 domain. Kinesins are ATP-driven microtubule
motor proteins that produce directed force. Some family
members are associated with the phragmoplast, a
structure composed mainly of microtubules that executes
cytokinesis in higher plants.
Length = 488
Score = 29.1 bits (65), Expect = 3.9
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 101 AVQQERDALKK-LENVKRDHETRLSALEQ 128
+QE + LKK +E +KR H+ + ++Q
Sbjct: 452 LAEQENEKLKKQIEKLKRKHKMEIVTMKQ 480
>gnl|CDD|117964 pfam09424, YqeY, Yqey-like protein. The function of this domain
found in the YqeY protein is uncertain.
Length = 143
Score = 27.9 bits (63), Expect = 5.7
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 23/75 (30%)
Query: 100 KAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIA 159
K V+Q R+++++ E R L +KEKAE+ I + + +
Sbjct: 52 KEVKQRRESIEQFEKAGRQ-----------DLAEKEKAEIAI------------LEEYLP 88
Query: 160 NQLSWEDIEARVKQA 174
QLS E+IEA V +A
Sbjct: 89 QQLSDEEIEALVDEA 103
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 28.8 bits (65), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 244 ANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKD 284
A+R DL + AA+ Q + EK L++AE K + K
Sbjct: 482 EQAEREGDLAK-AAELQYGKLPELEKRLQAAEAKLGEETKP 521
>gnl|CDD|227092 COG4749, COG4749, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 196
Score = 28.0 bits (62), Expect = 6.7
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 105 ERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSW 164
+ + K + VK + R L + D++K EL Q S+ A +L+ + ++S
Sbjct: 56 KEREISKADAVKELEKIRDLVLAEHDFGDEDKNELFDFVQTSLKAVLLSFELYVEGKISD 115
Query: 165 E-DIEARVKQA 174
+ E +K A
Sbjct: 116 KASFEELLKAA 126
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 27.6 bits (62), Expect = 6.7
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 251 DLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARK 296
DL+R A Q K + EK LK+ E+K K ++VQ + NI + RK
Sbjct: 82 DLERELALLQAK-ERQLEKKLKTLEQKLKNEKEEVQRLKNIIQQRK 126
>gnl|CDD|219731 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N terminal domain
is found in RNA-binding proteins of the NOP5 family.
Length = 67
Score = 26.0 bits (58), Expect = 6.8
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 275 EKKTKQTLKDVQT-MTNINKARKVYWFEKFYWFISSENYLGNVA 317
EK K+VQ ++ K K+ + F F S+ + L N
Sbjct: 19 EKDLIGDDKEVQKSFQDLEKFSKMVKLKAFQPFKSAADALENAN 62
>gnl|CDD|132288 TIGR03244, arg_catab_AstA, arginine N-succinyltransferase. In many
bacteria, the arginine succinyltransferase (ast) pathway
operon consists of five genes, including this protein,
arginine N-succinyltransferase (EC 2.3.1.109). In a few
species, such as Pseudomonas aeruginosa, the member of
this family is encoded adjacent to a paralog, and the
two polypeptides form a heterodimeric enzyme, active on
both arginine and ornithine. In such species, this
polypeptide may be treated as the beta subunit of an
enzyme that may be named either arginine
N-succinyltransferase (AST) or arginine and orthithine
N-succinyltransferase (AOST) [Energy metabolism, Amino
acids and amines].
Length = 336
Score = 28.1 bits (63), Expect = 7.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 10 DIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSED----YIVANMEFH 54
DI GPTL V+++ + LV P + D YIVAN
Sbjct: 249 DIFDAGPTLEAEVADIRAVRESRLVPVAVGEPAARDDAPPYIVANTSLS 297
>gnl|CDD|182133 PRK09894, PRK09894, diguanylate cyclase; Provisional.
Length = 296
Score = 28.1 bits (63), Expect = 8.8
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 77 EFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLEN 114
F++F + F + +KI L ++ D L L
Sbjct: 102 HFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPG 139
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase.
Length = 251
Score = 27.7 bits (61), Expect = 9.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 168 EARVKQAQRHNDPVASIIKQLKLNINHITLLL------RVHKERSNIKDSW 212
E R+ QA + D + + ++ LN I L R HKERS + +W
Sbjct: 129 EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSGFEGAW 179
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.128 0.364
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,410,990
Number of extensions: 1730078
Number of successful extensions: 2297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2284
Number of HSP's successfully gapped: 100
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)