RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4691
(380 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 54/394 (13%), Positives = 111/394 (28%), Gaps = 133/394 (33%)
Query: 2 VSNEDVSSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNS------EDYIVANMEFHP 55
+S E++ H+++S VS L + E+ + N +F
Sbjct: 46 LSKEEID----------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93
Query: 56 MILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAES----HKIDLKAVQQERDALKK 111
++ P T RQ P + D ++ + + L+ + R AL +
Sbjct: 94 -LMSPIKTEQ--RQ----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 112 LENVKRDHE------------TRLSALEQTQLVDKEKAELIINN--------QESVDAAI 151
L R + T ++ + K + ++ + +
Sbjct: 147 L----RPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 152 LAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERS----- 206
L + Q + Q+ + +R + + SI +L+ L + ++
Sbjct: 199 LEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYE-NCLLVLL 251
Query: 207 NIKDSWVLHH--------------DNADPFADSSETKKPSLVDVD--------LDLSA-Y 243
N++++ + D F ++ T SL L Y
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 244 ANAKRFFDLKRSAAK-----------------------------KQQKTIQSTEKALKSA 274
+ + DL R K I+S+ L+ A
Sbjct: 311 LDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 275 E-KKTKQTL----KDVQTMTNI-NKARKVYWFEK 302
E +K L +I + WF+
Sbjct: 370 EYRKMFDRLSVFPPSA----HIPTILLSLIWFDV 399
Score = 35.2 bits (80), Expect = 0.044
Identities = 65/461 (14%), Positives = 129/461 (27%), Gaps = 126/461 (27%)
Query: 14 CGPTLHVLVSNLNVSSQGYLVQKKE--------KRPNSEDYIVANMEFHPMILQPGSTPS 65
G T + L+V + K + K NS + ++ ++ + P T
Sbjct: 161 SGKT--WVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS- 215
Query: 66 VMRQHQGFPI-QEFESFAAAVDEFFSTAESHK---IDLKAVQQERDALKKLENVK----- 116
R I S A + + + ++ + L VQ A N+
Sbjct: 216 --RSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQ-NAKAWNAF-NLSCKILL 270
Query: 117 --RDHE--TRLSALEQTQ---------LVDKEKAELIINN---------QESVDAAILAI 154
R + LSA T L E L++ +E + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 155 RQDIANQLSWEDIEARVKQAQRHN-DPVASIIKQLKLNINHIT--------LLLRVHKER 205
IA + D A + N D + +II+ ++N + L V
Sbjct: 331 SI-IAESIR--DGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 206 SNIKDS-----WVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQ 260
++I W +D ++ K SLV+ S + + +LK +
Sbjct: 385 AHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 261 Q--KTIQSTEKALKSAEKKTKQTLKDVQT--------MTNINKARKVYWFEKFYWFISSE 310
++I K+ + Q + NI ++ F +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----- 498
Query: 311 NYLGNVAW-DAKV--VTNAWWVKA-------------DQVSKTAPTGEFLTTGSFMIRGK 354
+ + + K+ + AW + P E ++
Sbjct: 499 ----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE------RLVNAI 548
Query: 355 KNFFPPC-------------QLAM--GISFLFKLEESSISR 380
+F P ++A+ +F+ + R
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 68/416 (16%), Positives = 121/416 (29%), Gaps = 147/416 (35%)
Query: 8 SSDIHKCGPTLHVLVSNLNVSSQGYLVQKKEKRPNSEDYIVANMEF-HPMILQPGST--P 64
+DIH L + L + LV+ KE N YI A + P + S
Sbjct: 98 GNDIH-------ALAAKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKSNSALFR 147
Query: 65 SVMRQH---------QG-----FP-IQE-FESFAAAVDEFFSTAESHKIDL--------K 100
+V + QG F +++ ++++ V + + +L K
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 101 AVQQERDALKKLENVKR--DHETRLSA------LEQTQLV---------DKEKAEL---- 139
Q + L+ LEN D + LS + QL EL
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 140 --IINNQESVDAAILAIRQDIANQLSWED--------------IEARVKQAQRHNDPVAS 183
+ + + A+ IA SWE I R +A + S
Sbjct: 268 KGATGHSQGLVTAVA-----IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 184 IIKQLK----------LNINHIT---LLLRVHKERS-------------NIKDSWV---- 213
I++ L+I+++T + V+K S N + V
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 214 ----------LHHDNADPFADSSET----KKPSLVDVDLDLSA-----Y---ANAKRFFD 251
L A D S +K + L +++ A+ D
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 252 LKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTM-TNINKA-------RKVYW 299
L + + K ++ T D++ + +I++ V W
Sbjct: 443 LVK-------NNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 33.5 bits (76), Expect = 0.13
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 41/140 (29%)
Query: 59 QPGSTPSVMRQHQGFPIQEFESFAAAVDEFFSTAESHKID------LKAVQQERDAL--- 109
Q GS Q QG + +++ AA + ++ A++H D L V L
Sbjct: 1624 Q-GS------QEQGMGMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 110 ------KKL-ENV-KRDHETRLSALEQTQLVDKEKAE----LIINNQESV-DA------A 150
K++ EN ET + +T+ + KE E +++ + A A
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 151 ILAIRQDIANQLSWEDIEAR 170
+ + A ++ED++++
Sbjct: 1736 LTLME--KA---AFEDLKSK 1750
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.045
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 25/54 (46%)
Query: 105 ERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDI 158
E+ ALKKL+ ++L K A+ +S A LAI+ +
Sbjct: 18 EKQALKKLQ----------ASL-------KLYAD------DSAPA--LAIKATM 46
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Length = 157
Score = 31.1 bits (70), Expect = 0.28
Identities = 16/134 (11%), Positives = 46/134 (34%), Gaps = 4/134 (2%)
Query: 67 MRQHQGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQERDALKKLENVKRDHETRLSAL 126
M + F ++ + L+ ++E L++L K+ +L
Sbjct: 2 MPDSPTL-LDLFAEDIGHANQLLQLVDEEFQALE--RRELPVLQQLLGAKQPLMQQLERN 58
Query: 127 EQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIK 186
+ + +A + ++E + +++ +++ Q+ N II+
Sbjct: 59 GRARAEILREAGVS-LDREGLARYARERADGAELLARGDELGELLERCQQANLRNGRIIR 117
Query: 187 QLKLNINHITLLLR 200
+ + + +LR
Sbjct: 118 ANQASTGSLLNILR 131
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 30.9 bits (68), Expect = 0.81
Identities = 30/253 (11%), Positives = 70/253 (27%), Gaps = 27/253 (10%)
Query: 93 ESHKIDLKAVQ--------QERDALKKL---ENVKRDHETRLSALEQTQLVDKEKAELII 141
++L + QE D K+L E+ + ++ R E Q + ++I
Sbjct: 374 LDGSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVI 433
Query: 142 NNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRV 201
+ + + + + + A D V K ++ L
Sbjct: 434 QRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNRSLGATNRELIN 493
Query: 202 HKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQ 261
++ + + S ++ +S K + + L ++ +
Sbjct: 494 NRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIES 553
Query: 262 KTIQSTEKALKSAEKKTKQTLKDVQTMTNINKA--------RKVYWFEKFYWFISSE--- 310
T K + K+ D R+ Y+ +KF+
Sbjct: 554 STPVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQKFHISPDEPEKI 613
Query: 311 -----NYLGNVAW 318
+Y+ + W
Sbjct: 614 REAVKHYVHGLCW 626
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 30.5 bits (68), Expect = 0.88
Identities = 28/244 (11%), Positives = 74/244 (30%), Gaps = 11/244 (4%)
Query: 104 QERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLS 163
E LK+ E V E L+ + + + + E+V + + + + + +
Sbjct: 57 TEEAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERA 116
Query: 164 -WEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPF 222
E+ ++ + + +A++ L + + V K L AD F
Sbjct: 117 ALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALADRF 176
Query: 223 ADSSETKK----------PSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALK 272
+E + S ++ + A K ++ +
Sbjct: 177 VLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERAR 236
Query: 273 SAEKKTKQTLKDVQTMTNINKARKVYWFEKFYWFISSENYLGNVAWDAKVVTNAWWVKAD 332
A ++ ++V ++ + + + + ++ + ++A WV
Sbjct: 237 LAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQK 296
Query: 333 QVSK 336
K
Sbjct: 297 AKGK 300
>2w4y_A Caulobacter 5 virus-like particle; structure, assembly, calcium
ION, RNA; HET: AMP; 2.90A {Unclassified levivirus} PDB:
2w4z_A*
Length = 122
Score = 28.6 bits (63), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 36 KKEKRPNSEDYIVANMEFHPMILQPGSTPSVMRQ 69
K+ +PN Y N+EF + GSTP +RQ
Sbjct: 49 KESVKPNQVQYERHNVEFTETVYASGSTPEFVRQ 82
>3bnj_A Cytochrome C-552; C-type cytochrome, nitrite reductase, sulfite
complex, calcium, electron transport, heme, iron,
metal-binding; HET: HEM; 1.30A {Wolinella succinogenes}
PDB: 3bnh_A* 3bng_A* 1fs9_A* 1fs7_A* 1fs8_A* 2e80_A*
2e81_A* 3bnf_A* 1qdb_A*
Length = 485
Score = 29.5 bits (65), Expect = 2.3
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 234 VDVDLDLSAYANAKRFFDLKRSAAKKQQ---KTIQSTEKALKSAEKKTKQTLKDVQTMTN 290
V D + A D++ A+K + Q +K + + ++LK V ++
Sbjct: 419 VAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSS 478
Query: 291 INKARK 296
K
Sbjct: 479 YYDKTK 484
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 27.6 bits (62), Expect = 2.4
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 99 LKAVQQERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDI 158
K+ R R+ LE +K+ + ++ ++E + IR +
Sbjct: 8 SSRENLYFQGQKES----RACLERIQELEDLLAKEKDNSRRMLTDKE---REMAEIRDQM 60
Query: 159 ANQL 162
QL
Sbjct: 61 QQQL 64
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein
structure initiative, midwest center for structural
genomics; 2.81A {Staphylococcus aureus subsp}
Length = 288
Score = 28.4 bits (63), Expect = 3.3
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 10/39 (25%)
Query: 52 EFHPMILQPGSTPSVMRQHQGFPIQEFESFAAAVDEFFS 90
+F+ + L ++S +D F+
Sbjct: 250 DFYFIKLN----------QFNDDTVTYDSLNDLLDRFYD 278
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 28.7 bits (64), Expect = 3.4
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 13/115 (11%)
Query: 65 SVMRQHQGFPIQEFESFAAAVDEFFSTAESHKI--DLKAVQQERDALKKLENVKRDHETR 122
R HQ F ++ + + + E S DL VQ R K+LE HE
Sbjct: 107 ESHRLHQFF--RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPA 164
Query: 123 LSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRH 177
+ + T + + ++ I + W++++ +
Sbjct: 165 IQGVLDT-------GKKLSDDNTIGKEEIQQRLAQFVDH--WKELKQLAAARGQR 210
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural
genomics, PSI-2, protein structure initiative; 2.03A
{Bacillus cereus} SCOP: h.4.4.2
Length = 346
Score = 28.8 bits (63), Expect = 3.4
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 183 SIIKQLKLNINHITLLLRVHKERSNIKDSWVLHHDNADPFADSSETKKPSLVDVDLDLSA 242
+IK +N IT+ I +A + K L+D +
Sbjct: 42 MLIKNPDVNFEGITIN-GYVDLPGRIVQDQKNARAHAVTWDT---KVKKQLLDTLNGIVE 97
Query: 243 YANAKRFF--DLKRSAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTN 290
Y + + + +T++ L+ ++ ++ + +
Sbjct: 98 YDTTFDNYYETMVEAINTGDGETLKEGITDLRGEIQQNQKYAQQLIEELT 147
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics,
center for structural genomics, JCSG; HET: MSE EPE;
1.35A {Bacteroides fragilis nctc 9343}
Length = 528
Score = 28.6 bits (64), Expect = 4.6
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 248 RFFDLKR--SAAKKQQKTIQSTEKALKSAEKKTKQTLKDVQTMTNINKARKVYWFEKFYW 305
R++D+ R A + + I S + T D ++ + Y
Sbjct: 454 RYWDIMRWGIAHEVLSQKIWG-APYPGSTQYATTTKEVDPTGNYRWYVGKRAFRNPTDYT 512
Query: 306 F 306
+
Sbjct: 513 W 513
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Length = 154
Score = 27.4 bits (60), Expect = 6.1
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 14/119 (11%)
Query: 99 LKAVQQERDALKKLENV---------KRDHETRLSALEQTQLVDKEKAELIINNQESVDA 149
L A++ E +AL K L+ L + A L
Sbjct: 24 LHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGL----ASGPAG 79
Query: 150 AILAIRQDIANQLSWEDIEARVKQAQRHNDPVASII-KQLKLNINHITLLLRVHKERSN 207
A W+ ++A QA+ HN ++I L+ + L + +
Sbjct: 80 TDAAAAAHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQAAGTGAA 138
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 6.9
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 83 AAVDEFFSTAESHKI-DLKAVQQERDALKKLENVKRDHETRLSA---LEQTQLVDKEKAE 138
A D T E I + Q++R + + E R A LE+ E+ E
Sbjct: 75 AQADR--LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 139 LIINNQESVDAAILAIRQD 157
N D A
Sbjct: 133 KNKINNRIADKAFYQQPDA 151
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover,
shikimate pathway, lyase; 1.90A {Staphylococcus aureus
subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Length = 238
Score = 27.2 bits (60), Expect = 8.6
Identities = 10/82 (12%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 105 ERDALKKLENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAAILAIRQDIANQLSW 164
L + ++ + + +E +D EK + II + + + ++ + +
Sbjct: 82 NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPL 141
Query: 165 EDIEARVKQAQRHNDPVASIIK 186
++++ + Q+ N +K
Sbjct: 142 DELQFIFFKMQKFN---PEYVK 160
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 27.6 bits (60), Expect = 8.8
Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 18/180 (10%)
Query: 100 KAVQQERDALKKLENVKRDHETRLSALEQTQLVDK-EKAELIINNQESVDAAILAIRQDI 158
KA QQ DA +L R + + ++D + + I
Sbjct: 196 KAKQQAEDAWDRLPPNVRKFDVDVEQFHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGI 255
Query: 159 ANQLSWEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLRVHK--ERSNIKDSWVLHH 216
+++ + E + +N+ + K + + + + +
Sbjct: 256 MDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVIS 315
Query: 217 DNADPFADSSETKKPSLVDVDLDLSAYANAKRFFDLKRSAAKKQQKTIQSTEKALKSAEK 276
D + D SL ++ Q KTI+S + A+ S K
Sbjct: 316 DIGNKVGDYLGDAYKSLAR---------------EIADDVKNFQGKTIRSYDDAMASLNK 360
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 27.3 bits (61), Expect = 8.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 237 DLDLSAYANAKRFFDLKRSAAKKQ 260
+++ A NA++F + +AA +
Sbjct: 233 EMEKVARENARKFLRVLEAAALEH 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.128 0.364
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,396,224
Number of extensions: 309785
Number of successful extensions: 786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 39
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)