RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4691
         (380 letters)



>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus
           [TaxId: 10376]}
          Length = 172

 Score = 30.4 bits (68), Expect = 0.20
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 54  HPMILQPGSTPSVMRQH---QGFPIQEFESFAAAVDEFFSTAESHKIDLKAVQQE 105
            P+ L P  T  V+R H   +    +  E+F    + F +  E   +D  +V  E
Sbjct: 36  TPLRLSPEDT-VVLRYHVLLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLE 89


>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 130

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 99  LKAVQQERDALKK-----LENVKRDHETRLSALEQTQLVDKEKAELIINNQESVDAA--- 150
           L+ V +E  AL++     L+ +    +  +  LE+     + +AE++     S+D     
Sbjct: 22  LQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERN---GRARAEILREAGVSLDREGLA 78

Query: 151 ILAIRQDIANQLS--WEDIEARVKQAQRHNDPVASIIKQLKLNINHITLLLR 200
             A  +    +L    +++   +++ Q+ N     II+  + +   +  +LR
Sbjct: 79  RYARERADGAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILR 130


>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
           {Bacillus caldotenax [TaxId: 1395]}
          Length = 413

 Score = 27.4 bits (60), Expect = 3.0
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 136 KAELIINNQESVDAAILAIRQDIANQLSWEDIEARVKQAQRHNDPVASIIKQLK--LNIN 193
            A   +  +E +  AI  I Q++  +L+    + ++ +AQR        ++ ++     +
Sbjct: 244 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 303

Query: 194 HITLLLRVHKERSNIKDSWVLHH 216
            I    R    R      + L  
Sbjct: 304 GIENYSRHLALRPPGSTPYTLLD 326


>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 26.7 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 339 PTGEFLTTGSF-MIRGKKNFFPPCQLAMGISFLF 371
           PTG  + +    M  G      P   A+G  FLF
Sbjct: 345 PTGIKIFSWIATMWGGSIELKTPMLWALGFLFLF 378


>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase
           {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 26.2 bits (57), Expect = 7.0
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 160 NQLSWEDIEARVKQAQRHNDPVASIIKQL------KLNINHITLLLRVHKERSNIKDSWV 213
           N  + E I+A ++       PV   I          + +  I  L   +    N+     
Sbjct: 23  NIHNAETIQAILEVCSEMRSPV---ILAGTPGTFKHIALEEIYALCSAYSTTYNMP--LA 77

Query: 214 LHHDNADPFADSSETKKPSLVDVDLDLSAY 243
           LH D+ +   D        +    +D S +
Sbjct: 78  LHLDHHESLDDIRRKVHAGVRSAMIDGSHF 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,030
Number of extensions: 57062
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 17
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)