BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4692
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila
melanogaster GN=Clbn PE=1 SV=2
Length = 992
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 83/97 (85%)
Query: 57 VSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNI 116
V +VD+L+SLTGQP DELLFA+PVVAPY L NYK+KVKL PGTGKRGKA+K A NI
Sbjct: 890 VGGDVDVLNSLTGQPHEGDELLFAIPVVAPYQALQNYKFKVKLTPGTGKRGKAAKLALNI 949
Query: 117 FLKDKNASSREKDLIKSVKDEVLARNIPGKVKLSAPQ 153
F K+K+ S+REKDL+KS+K+E LARNIPGKVKLSAPQ
Sbjct: 950 FAKEKSCSAREKDLLKSIKEESLARNIPGKVKLSAPQ 986
>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4
Length = 1076
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 5/156 (3%)
Query: 7 KENKKSKKGKREKGGIAKLTREIDSRHPPRPQPAVD--PDEREGDEIETEPVVSAEVDML 64
K+ +K + G+R I K T ++ AVD D++E +++ + E ++
Sbjct: 924 KQPQKPRGGQRVSDNIKKETPFLEVITHELQDFAVDDPHDDKEEQDLDQQ---GNEENLF 980
Query: 65 DSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNIFLKDKNAS 124
DSLTGQP ED LLFA+P+ APY T+TNYKYKVKL PG K+GKA+KTA N F+ K A+
Sbjct: 981 DSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEAT 1040
Query: 125 SREKDLIKSVKDEVLARNIPGKVKLSAPQTLLLKAK 160
+REKDL +SVKD L+RNIPGKVK+SAP L +K K
Sbjct: 1041 AREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK 1076
>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2
Length = 1064
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 78/101 (77%)
Query: 60 EVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNIFLK 119
E ++ DSLTGQP ED L+FA+P+ APY +TNYKYKVKL PG K+GKA+KTA N F+
Sbjct: 964 EENLFDSLTGQPHPEDVLMFAIPICAPYTIMTNYKYKVKLTPGVQKKGKAAKTALNSFMH 1023
Query: 120 DKNASSREKDLIKSVKDEVLARNIPGKVKLSAPQTLLLKAK 160
K A++REKDL +SVKD L+RNIPGKVK+SAP L +K K
Sbjct: 1024 SKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK 1064
>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2
Length = 1021
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 64 LDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNIFLKDKNA 123
+DSLT P +D ++ AVP APY +T + KVK+MPGTGK GKA++ + F+K
Sbjct: 922 IDSLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLPK 981
Query: 124 SSREKDLIKSVKD-EVLA 140
SS+E ++++KD E++A
Sbjct: 982 SSKEAAYLENLKDGEIVA 999
>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1
Length = 1038
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 81 VPVVAPYVTLTNYKYKVKLMPGTGKRGKA 109
+PV AP+ L YKYKVK+ PG+ K+ K
Sbjct: 938 IPVFAPWPALLKYKYKVKIQPGSAKKTKT 966
>sp|C7Z274|M28P1_NECH7 Probable zinc metalloprotease NECHADRAFT_96958 OS=Nectria
haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596
/ MPVI) GN=NECHADRAFT_96958 PE=3 SV=1
Length = 1032
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 23 AKLTREIDSR---HPPRPQPAVDPDEREGDEIETE 54
A R+I S H RPQP +P + EGDE E+E
Sbjct: 612 AHQARDISSHGTDHESRPQPEEEPAQPEGDEDESE 646
>sp|Q3KSU8|DEN_EBVG Deneddylase BPLF1 OS=Epstein-Barr virus (strain GD1) GN=BPLF1 PE=3
SV=1
Length = 3176
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 22 IAKLTREIDSRHPPRPQPAVDPDEREGDEIETEPVVSAEV---DMLDSLTGQPCNEDELL 78
IA ID H R P +DP+ ++G + +P+VS + +M + LT +P L
Sbjct: 1256 IASFEESID--HLYRDLPVLDPEVQDGIDRILDPMVSEALHTFEMGNRLTLEPAR----L 1309
Query: 79 FAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNIFLKDKNASSREKDLIKSVKDEV 138
A+ A + TL V L+PG A+ T Q A L+ +++++
Sbjct: 1310 VALQNFATHSTLKETAAAVNLLPGLLAVYDATVTGQ--------APEDALRLLSGLQNQL 1361
Query: 139 LARNIPGKVK 148
IPGK+K
Sbjct: 1362 SQTLIPGKLK 1371
>sp|Q1HVH9|DEN_EBVA8 Deneddylase BPLF1 OS=Epstein-Barr virus (strain AG876) GN=BPLF1 PE=3
SV=1
Length = 3154
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 22 IAKLTREIDSRHPPRPQPAVDPDEREGDEIETEPVVSAEV---DMLDSLTGQPCNEDELL 78
IA ID H R P +DP+ ++G + +P+VS + +M + LT +P L
Sbjct: 1234 IASFEESID--HLYRDLPVLDPEVQDGIDRILDPMVSEALHTFEMGNRLTLEPAR----L 1287
Query: 79 FAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNIFLKDKNASSREKDLIKSVKDEV 138
A+ A + TL V L+PG A+ T Q A L+ +++++
Sbjct: 1288 VALQNFATHSTLKETAAAVNLLPGLLAVYDATVTGQ--------APEDALRLLSGLQNQL 1339
Query: 139 LARNIPGKVK 148
IPGK+K
Sbjct: 1340 SQTLIPGKLK 1349
>sp|P03186|DEN_EBVB9 Deneddylase BPLF1 OS=Epstein-Barr virus (strain B95-8) GN=BPLF1 PE=1
SV=1
Length = 3149
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 22 IAKLTREIDSRHPPRPQPAVDPDEREGDEIETEPVVSAEV---DMLDSLTGQPCNEDELL 78
IA ID H R P +DP+ ++G + +P+VS + +M + LT +P L
Sbjct: 1229 IASFEESID--HLYRDLPVLDPEVQDGIDRILDPMVSEALHTFEMGNRLTLEPAR----L 1282
Query: 79 FAVPVVAPYVTLTNYKYKVKLMPGTGKRGKASKTAQNIFLKDKNASSREKDLIKSVKDEV 138
A+ A + TL V L+PG A+ T Q A L+ +++++
Sbjct: 1283 VALQNFATHSTLKETAAAVNLLPGLLAVYDATITGQ--------APEDALRLLSGLQNQL 1334
Query: 139 LARNIPGKVK 148
IPGK+K
Sbjct: 1335 SQTLIPGKLK 1344
>sp|B9FM64|UFL1_ORYSJ E3 UFM1-protein ligase 1 homolog OS=Oryza sativa subsp. japonica
GN=Os05g0117600 PE=3 SV=1
Length = 812
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 35 PRPQPAVDPDEREGDEIETEPVVSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYK 94
P+P+ ++ +G +E V + VDMLD+ G + + A+ V+ Y+T +
Sbjct: 282 PQPKQYLEARYPDGIALEAVFVHPSVVDMLDAAVGDTIENGQWIDALSVLPSYITGPDAT 341
Query: 95 YKVKLMPGTGKRGKASK 111
+ L P K K+SK
Sbjct: 342 KILSLCPSLQKAIKSSK 358
>sp|B8AXB6|UFL1_ORYSI E3 UFM1-protein ligase 1 homolog OS=Oryza sativa subsp. indica
GN=OsI_18219 PE=3 SV=1
Length = 812
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 35 PRPQPAVDPDEREGDEIETEPVVSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYK 94
P+P+ ++ +G +E V + VDMLD+ G + + A+ V+ Y+T +
Sbjct: 282 PQPKQYLEARYPDGIALEAVFVHPSVVDMLDAAVGDTIENGQWIDALSVLPSYITGPDAT 341
Query: 95 YKVKLMPGTGKRGKASK 111
+ L P K K+SK
Sbjct: 342 KILSLCPSLQKAIKSSK 358
>sp|Q8C147|DOCK8_MOUSE Dedicator of cytokinesis protein 8 OS=Mus musculus GN=Dock8 PE=1
SV=4
Length = 2100
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 102 GTGKRGKASKTAQNIFLKDKNASSREKDLIKSVKD-------EVLARNIPGKVKL 149
G G KA+ A NIF K + ++DL K + D + ++IPG ++L
Sbjct: 457 GVGSNFKATTLATNIFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGSLRL 511
>sp|Q9KD71|DNAJ_BACHD Chaperone protein DnaJ OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=dnaJ PE=3
SV=1
Length = 370
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 45 EREGDEIETE-PVVSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGT 103
ER+GD+I E P+ +V + D + P ++ +P A T T+++ + K +P
Sbjct: 258 ERDGDDIYCEMPLTFVQVALGDEIE-VPTLNGKVKLKIP--AGTQTGTSFRLRGKGVPNV 314
Query: 104 GKRGKASKTAQNIFLKDKNASSREKDLIKSV 134
RG+ + Q + K S +EK+L++
Sbjct: 315 HGRGQGDQHVQVRVITPKQLSEKEKELLREF 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,261,965
Number of Sequences: 539616
Number of extensions: 2630508
Number of successful extensions: 7087
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 7046
Number of HSP's gapped (non-prelim): 82
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)