Query psy4692
Match_columns 162
No_of_seqs 129 out of 191
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 23:27:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1clv_I Protein (alpha-amylase 41.2 6 0.0002 23.1 0.1 15 79-93 13-27 (32)
2 1cmb_A Met APO-repressor; DNA- 39.1 6.2 0.00021 28.8 -0.1 17 62-78 60-76 (104)
3 2ld7_A Histone deacetylase com 16.0 22 0.00074 25.5 -0.8 34 87-121 29-64 (94)
4 1jov_A HI1317; hypothetical pr 6.9 96 0.0033 24.8 -0.1 13 77-89 69-81 (270)
5 1mhn_A SurviVal motor neuron p 5.8 2.5E+02 0.0085 17.3 1.5 18 82-100 9-26 (59)
6 2gax_A Hypothetical protein AT 5.8 1.6E+02 0.0055 21.7 0.6 35 59-94 94-128 (135)
7 3k25_A SLR1438 protein; struct 5.8 1.8E+02 0.0062 23.2 1.0 20 77-96 60-80 (289)
8 1wgk_A Riken cDNA 2900073H19 p 5.5 2.5E+02 0.0087 19.9 1.6 24 60-84 82-105 (114)
9 1j0g_A Hypothetical protein 18 5.5 1.5E+02 0.0052 21.0 0.3 31 62-93 12-42 (92)
10 1qqp_1 FMDV, protein (genome p 5.3 1.8E+02 0.0062 23.5 0.7 18 76-93 112-129 (213)
No 1
>1clv_I Protein (alpha-amylase inhibitor); insect alpha-amylase inhibitor, amaranthus hypochondriacus, yellow MEAL WORM, knottin, hydrolase; 2.00A {Tenebrio molitor} SCOP: g.3.2.1 PDB: 1htx_A 1qfd_A
Probab=41.20 E-value=6 Score=23.07 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.1
Q ss_pred eeceecccchhhccc
Q psy4692 79 FAVPVVAPYVTLTNY 93 (162)
Q Consensus 79 ~AVPVcAPysAL~~y 93 (162)
+.||-|-||.+.+.|
T Consensus 13 dgvpccepytctsdy 27 (32)
T 1clv_I 13 DGVPCCEPYTCTSDY 27 (32)
T ss_dssp HCCCBCTTCCBSCSS
T ss_pred CCccccCceeccccc
Confidence 468999999998877
No 2
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=39.09 E-value=6.2 Score=28.77 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=14.3
Q ss_pred hhcccccCCCCCCCeEE
Q psy4692 62 DMLDSLTGQPCNEDELL 78 (162)
Q Consensus 62 ~~ld~Ltg~P~~~D~Il 78 (162)
.+|..|||+|.|.|.=|
T Consensus 60 AFLHA~TGQPLP~D~Dl 76 (104)
T 1cmb_A 60 AFLHAFTGQPLPDDADL 76 (104)
T ss_dssp HHHHHHHCCCCCCGGGG
T ss_pred HHHHHhcCCCCCCchhh
Confidence 67999999999998543
No 3
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=16.04 E-value=22 Score=25.53 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=23.9
Q ss_pred chhhccce--eeEEeecCCcchhhHHHHHHHHHHhCc
Q psy4692 87 YVTLTNYK--YKVKLMPGTGKRGKASKTAQNIFLKDK 121 (162)
Q Consensus 87 ysAL~~yK--YKVKL~PG~~KKGKaak~al~~F~~~~ 121 (162)
..+|.+|+ |++...|+. -|-+-+..+..||....
T Consensus 29 ~~tLrrY~r~y~L~~~~~~-sK~qLa~aV~kHF~s~~ 64 (94)
T 2ld7_A 29 VNTLRRYKRHFKLPTRPGL-NKAQLVEIVGCHFKSIP 64 (94)
T ss_dssp HHHHHHHHHHTTCCCCSSC-CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHcCC
Confidence 56788887 445445554 55688999999997644
No 4
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7
Probab=6.95 E-value=96 Score=24.75 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=9.9
Q ss_pred EEeeceecccchh
Q psy4692 77 LLFAVPVVAPYVT 89 (162)
Q Consensus 77 Il~AVPVcAPysA 89 (162)
|-..||||.||..
T Consensus 69 irGGiPvlfP~~g 81 (270)
T 1jov_A 69 IRGGVPICYPWFG 81 (270)
T ss_dssp CSBSCCEEBSSCG
T ss_pred ccCccEEEEeccC
Confidence 4455999999864
No 5
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=5.79 E-value=2.5e+02 Score=17.30 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=11.5
Q ss_pred eecccchhhccceeeEEee
Q psy4692 82 PVVAPYVTLTNYKYKVKLM 100 (162)
Q Consensus 82 PVcAPysAL~~yKYKVKL~ 100 (162)
.++|+|+.=.. =|+++++
T Consensus 9 ~c~A~~s~Dg~-wYrA~I~ 26 (59)
T 1mhn_A 9 KCSAIWSEDGC-IYPATIA 26 (59)
T ss_dssp EEEEECTTTSC-EEEEEEE
T ss_pred EEEEEECCCCC-EEEEEEE
Confidence 46788864333 3777776
No 6
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=5.79 E-value=1.6e+02 Score=21.65 Aligned_cols=35 Identities=3% Similarity=0.007 Sum_probs=26.1
Q ss_pred hhhhhcccccCCCCCCCeEEeeceecccchhhccce
Q psy4692 59 AEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYK 94 (162)
Q Consensus 59 ~~~~~ld~Ltg~P~~~D~Il~AVPVcAPysAL~~yK 94 (162)
+|.+....++..| ++|.=+.+|.+|+|...+.+..
T Consensus 94 ~~~~~~~~~~~~~-~~~l~~~GI~l~Gp~k~VdklT 128 (135)
T 2gax_A 94 HDAANRQVFSHFS-PDTAKVVGMALRADRKIVDKIT 128 (135)
T ss_dssp CHHHHHHHHTTCC-TTTCCEEEEEEEEEHHHHHHHT
T ss_pred CHHHHHHHHhcCC-cccceEEEEEEECCHHHHHHHh
Confidence 4555556666665 8888889999999998876543
No 7
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=5.75 E-value=1.8e+02 Score=23.22 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.5
Q ss_pred EEeeceecccc-hhhccceee
Q psy4692 77 LLFAVPVVAPY-VTLTNYKYK 96 (162)
Q Consensus 77 Il~AVPVcAPy-sAL~~yKYK 96 (162)
+...+|||.|| ..+.+=.|.
T Consensus 60 ~~gg~Pvl~P~~gri~~g~~~ 80 (289)
T 3k25_A 60 VRGGIPILFPICGNLPQDQFN 80 (289)
T ss_dssp CCBSBCEEBSCSSCCGGGEEE
T ss_pred cCCCCCEEECCCCCCCCCEEE
Confidence 66799999999 446555544
No 8
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=5.53 E-value=2.5e+02 Score=19.91 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=16.9
Q ss_pred hhhhcccccCCCCCCCeEEeeceec
Q psy4692 60 EVDMLDSLTGQPCNEDELLFAVPVV 84 (162)
Q Consensus 60 ~~~~ld~Ltg~P~~~D~Il~AVPVc 84 (162)
+..++..+-....++|+|.+ ||-.
T Consensus 82 di~~l~gldt~L~dGDeV~i-ip~v 105 (114)
T 1wgk_A 82 DWELLGELDYQLQDQDSILF-ISTL 105 (114)
T ss_dssp BHHHHCTTTCBCCSSEEEEE-EECS
T ss_pred eeeccCCcCcCCCCCCEEEE-eCCC
Confidence 34566778888889999777 4443
No 9
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=5.51 E-value=1.5e+02 Score=21.02 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=22.1
Q ss_pred hhcccccCCCCCCCeEEeeceecccchhhccc
Q psy4692 62 DMLDSLTGQPCNEDELLFAVPVVAPYVTLTNY 93 (162)
Q Consensus 62 ~~ld~Ltg~P~~~D~Il~AVPVcAPysAL~~y 93 (162)
.+--.||+-|.---.+ ..||=.|||+|+.+|
T Consensus 12 tFkItltSdpklpfkv-lsVPE~~PftAVlkf 42 (92)
T 1j0g_A 12 SFKITLTSDPRLPYKV-LSVPESTPFTAVLKF 42 (92)
T ss_dssp EEEEEETTSTTCCEEE-EEEETTSBHHHHHHH
T ss_pred EEEEEEccCCCCCceE-EecCccCchHHHHHH
Confidence 3445677777644444 468999999998876
No 10
>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_1 1fod_1
Probab=5.33 E-value=1.8e+02 Score=23.53 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.3
Q ss_pred eEEeeceecccchhhccc
Q psy4692 76 ELLFAVPVVAPYVTLTNY 93 (162)
Q Consensus 76 ~Il~AVPVcAPysAL~~y 93 (162)
-.-++||-+||.+||..+
T Consensus 112 ~~RfsiPftsp~~ay~t~ 129 (213)
T 1qqp_1 112 LTRLALPYTAPHRVLATV 129 (213)
T ss_dssp CEEEEECCCCSSSSEESC
T ss_pred ccceecCCcchhheeeeE
Confidence 567999999999998854
Done!