Query psy4692
Match_columns 162
No_of_seqs 129 out of 191
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 23:27:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4692.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4692hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cmca_ a.43.1.5 (A:) Met repr 44.4 2.1 0.00016 29.4 -0.1 17 62-78 60-76 (104)
2 d1clvi_ g.3.2.1 (I:) alpha-amy 41.2 2.8 0.0002 23.1 0.1 15 79-93 13-27 (32)
3 d1fmd1_ b.121.4.1 (1:) Aphthov 13.1 26 0.0019 26.6 0.7 18 76-93 112-129 (207)
4 d1j0ga_ d.15.1.6 (A:) Hypothet 11.8 26 0.0019 23.3 0.3 30 63-93 13-42 (92)
5 d1cf1a1 b.1.18.11 (A:10-182) A 10.7 47 0.0035 24.5 1.5 25 77-109 109-133 (173)
6 d1g4ma1 b.1.18.11 (A:5-175) Ar 9.6 62 0.0045 23.7 1.8 25 77-109 111-135 (171)
7 d2jfga2 c.59.1.1 (A:298-437) U 8.0 64 0.0047 21.7 1.3 31 63-94 96-126 (140)
8 d1qqp1_ b.121.4.1 (1:) Aphthov 8.0 47 0.0035 25.1 0.5 40 76-117 112-156 (210)
9 d1nexa1 a.157.1.1 (A:116-185) 7.5 84 0.0061 19.2 1.5 25 106-130 44-68 (70)
10 d1w8oa1 b.1.18.2 (A:403-505) S 7.5 63 0.0046 20.9 0.9 16 83-103 2-17 (103)
No 1
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=44.36 E-value=2.1 Score=29.41 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=14.5
Q ss_pred hhcccccCCCCCCCeEE
Q psy4692 62 DMLDSLTGQPCNEDELL 78 (162)
Q Consensus 62 ~~ld~Ltg~P~~~D~Il 78 (162)
.+|..|||+|.|+|+=|
T Consensus 60 AFLHAfTGQPLP~D~Dl 76 (104)
T d1cmca_ 60 AFLHAFTGQPLPDDADL 76 (104)
T ss_dssp HHHHHHHCCCCCCGGGG
T ss_pred HHHHHhcCCCCCCchhh
Confidence 68999999999998643
No 2
>d1clvi_ g.3.2.1 (I:) alpha-amylase inhibitor (AAI) {Prince's feather (Amaranthus hypochondriacus) [TaxId: 28502]}
Probab=41.20 E-value=2.8 Score=23.07 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.1
Q ss_pred eeceecccchhhccc
Q psy4692 79 FAVPVVAPYVTLTNY 93 (162)
Q Consensus 79 ~AVPVcAPysAL~~y 93 (162)
+.||-|-||.+.+.|
T Consensus 13 dgvpccepytctsdy 27 (32)
T d1clvi_ 13 DGVPCCEPYTCTSDY 27 (32)
T ss_dssp HCCCBCTTCCBSCSS
T ss_pred CCccccCceeccccc
Confidence 468999999998877
No 3
>d1fmd1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]}
Probab=13.07 E-value=26 Score=26.61 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.8
Q ss_pred eEEeeceecccchhhccc
Q psy4692 76 ELLFAVPVVAPYVTLTNY 93 (162)
Q Consensus 76 ~Il~AVPVcAPysAL~~y 93 (162)
..-||||-+||++.|--+
T Consensus 112 ~trfalPYTAPhrvL~tv 129 (207)
T d1fmd1_ 112 VTRLALPYTAPHRVLATA 129 (207)
T ss_dssp EEEEEECCCCSSSSEESC
T ss_pred eEEEEeccCCcceEEEeE
Confidence 457999999999998643
No 4
>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.85 E-value=26 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=21.2
Q ss_pred hcccccCCCCCCCeEEeeceecccchhhccc
Q psy4692 63 MLDSLTGQPCNEDELLFAVPVVAPYVTLTNY 93 (162)
Q Consensus 63 ~ld~Ltg~P~~~D~Il~AVPVcAPysAL~~y 93 (162)
+--.||+-|.---.+ ..||=+|||+|+.+|
T Consensus 13 fkitltSdp~lpfkv-lsVpE~aPftAVlkf 42 (92)
T d1j0ga_ 13 FKITLTSDPRLPYKV-LSVPESTPFTAVLKF 42 (92)
T ss_dssp EEEEETTSTTCCEEE-EEEETTSBHHHHHHH
T ss_pred EEEEEccCCCCccEE-EecCccCchHHHHHH
Confidence 444567766544443 478999999998877
No 5
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=10.70 E-value=47 Score=24.45 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEeeceecccchhhccceeeEEeecCCcchhhH
Q psy4692 77 LLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGKA 109 (162)
Q Consensus 77 Il~AVPVcAPysAL~~yKYKVKL~PG~~KKGKa 109 (162)
+.|-+|-.||.| |-||||..=.||+
T Consensus 109 F~f~~p~~~P~S--------VtLQP~p~d~Gkp 133 (173)
T d1cf1a1 109 FLLTFPDYLPCS--------VMLQPAPQDVGKS 133 (173)
T ss_dssp EEECCCSSCCCC--------EEECCCTTCCSCC
T ss_pred eEEeCCCCCCce--------EEeccCCccCCCc
Confidence 678999999999 8899998888874
No 6
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
Probab=9.65 E-value=62 Score=23.75 Aligned_cols=25 Identities=40% Similarity=0.691 Sum_probs=21.1
Q ss_pred EEeeceecccchhhccceeeEEeecCCcchhhH
Q psy4692 77 LLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGKA 109 (162)
Q Consensus 77 Il~AVPVcAPysAL~~yKYKVKL~PG~~KKGKa 109 (162)
..|-+|-.+|.| |-||||..=-||+
T Consensus 111 F~f~~p~~~P~S--------VtLQP~~~d~gkp 135 (171)
T d1g4ma1 111 FTFEIPPNLPCS--------VTLQPGPEDTGKA 135 (171)
T ss_dssp EEECCCTTSCCC--------EEEECCGGGGGGC
T ss_pred eeecCCCCCCCe--------EEeccCCccCCCc
Confidence 468899999999 8899998777764
No 7
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=8.02 E-value=64 Score=21.74 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=24.2
Q ss_pred hcccccCCCCCCCeEEeeceecccchhhccce
Q psy4692 63 MLDSLTGQPCNEDELLFAVPVVAPYVTLTNYK 94 (162)
Q Consensus 63 ~ld~Ltg~P~~~D~Il~AVPVcAPysAL~~yK 94 (162)
.+..+...-.++|+||++ |-||.|.--.+|.
T Consensus 96 av~~a~~~~~~g~~VLlS-Pa~aSfD~f~nfe 126 (140)
T d2jfga2 96 AMRLLAPRVQPGDMVLLS-PACASLDQFKNFE 126 (140)
T ss_dssp HHHHHGGGCCTTCEEEEC-CSSBSTTTSSSHH
T ss_pred HHHHHHHhcccCCEEEEC-CCccchhhhhCHH
Confidence 344455566789999987 9999999888885
No 8
>d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]}
Probab=7.99 E-value=47 Score=25.08 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=14.9
Q ss_pred eEEeeceecccchhhcc-----ceeeEEeecCCcchhhHHHHHHHHH
Q psy4692 76 ELLFAVPVVAPYVTLTN-----YKYKVKLMPGTGKRGKASKTAQNIF 117 (162)
Q Consensus 76 ~Il~AVPVcAPysAL~~-----yKYKVKL~PG~~KKGKaak~al~~F 117 (162)
..-||||-+||.++|.- .+|- =+++..-+|.-+-.+..+|
T Consensus 112 ~trFalPyTaPh~vLaT~YnG~~~Ys--~~~~~~~rGDlgvl~a~~~ 156 (210)
T d1qqp1_ 112 LTRLALPYTAPHRVLATVYNGECRYS--RNAVPNLRGDLQVLAQKVA 156 (210)
T ss_dssp CEEEEECCCCSSSSEESCCCSCCC-----------------------
T ss_pred cEEEEeecccceeEEEEEECCccccC--cCCCCCcCCchhhhhhhhh
Confidence 56899999999888852 2342 1233344555444444443
No 9
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.51 E-value=84 Score=19.20 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHhCcCCChhHHHH
Q psy4692 106 RGKASKTAQNIFLKDKNASSREKDL 130 (162)
Q Consensus 106 KGKaak~al~~F~~~~~~~~rE~eL 130 (162)
|||...++..+|--..+-++.|.+-
T Consensus 44 kgkt~eeiR~~f~I~~D~t~eEe~~ 68 (70)
T d1nexa1 44 RGRSPEEIRRTFNIVNDFTPEEEAA 68 (70)
T ss_dssp TTCCHHHHHHHHTCCCCCCHHHHHT
T ss_pred ccCCHHHHHHHhCCCCCCCHHHHHh
Confidence 5777777777775544555555543
No 10
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=7.50 E-value=63 Score=20.91 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=10.3
Q ss_pred ecccchhhccceeeEEeecCC
Q psy4692 83 VVAPYVTLTNYKYKVKLMPGT 103 (162)
Q Consensus 83 VcAPysAL~~yKYKVKL~PG~ 103 (162)
+|||++.- ..-+.||.
T Consensus 2 ~c~p~t~p-----~~~v~pG~ 17 (103)
T d1w8oa1 2 ICAPFTIP-----DVALEPGQ 17 (103)
T ss_dssp CSCCEECC-----CEEECTTC
T ss_pred ccccccCc-----ceeeCCCC
Confidence 68888774 24566664
Done!