RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4692
(162 letters)
>gnl|CDD|221316 pfam11923, DUF3441, Domain of unknown function (DUF3441). This
presumed domain is functionally uncharacterized. This
domain is found in archaea and eukaryotes. This domain
is typically between 104 to 119 amino acids in length.
This domain is found associated with pfam05833,
pfam05670. This domain has two conserved residues (P and
G) that may be functionally important.
Length = 108
Score = 110 bits (277), Expect = 3e-32
Identities = 60/108 (55%), Positives = 72/108 (66%), Gaps = 4/108 (3%)
Query: 49 DEIETEPVVSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGTGKRGK 108
DE E + + LDSLTGQP EDE+L A+PV AP+ L+ YKYKVKL PG K+GK
Sbjct: 1 DEDIDEKDNAEYLRALDSLTGQPLPEDEILAAIPVCAPWSALSKYKYKVKLQPGNAKKGK 60
Query: 109 ASKTAQNIFL---KDKNASSREKDLIKSVKDEVLARNIP-GKVKLSAP 152
A+K N F KDK+ REK+LIKS+KDE L N+P GKVKLS P
Sbjct: 61 AAKEILNYFTASAKDKDDWPREKELIKSLKDEELVNNLPVGKVKLSLP 108
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 31.9 bits (72), Expect = 0.12
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 45 EREGDEIETE-PVVSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGT 103
ER+GD+I E P+ +V + D + P ++ +P A T T+++ + K +P
Sbjct: 258 ERDGDDIYCEMPLTFPQVALGDEIE-VPTLNGKVKLKIP--AGTQTGTSFRLRGKGVPNV 314
Query: 104 GKRGKASKTAQNIFLKDKNASSREKDLIK 132
RG+ + Q + KN + +EK+L++
Sbjct: 315 HGRGQGDQHVQVRVVTPKNLTEKEKELMR 343
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 29.7 bits (67), Expect = 0.77
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 18 EKGGIAKLTREIDSRHPPRPQPAVDPDEREGDEIETEPVVSAEVDMLD 65
GG+A PP P + D+ + D+ E E D+ D
Sbjct: 407 GGGGLAPPPEPPRPPPPPFPDDDDEGDDEDDDDWEDLGFDLDEDDVYD 454
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 28.7 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 55 PVVSAEVDMLDSLTGQPC--NEDELLFAVPVVAP 86
P+ + +LD TG+PC NE +L VP + P
Sbjct: 415 PMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPP 448
>gnl|CDD|221443 pfam12150, MFP2b, Cytosolic motility protein. This domain family
is found in eukaryotes, and is approximately 50 amino
acids in length. These proteins are found in nematodes.
They complex with MSP (major sperm protein) to allow
motility. Their action is quite similar to the action of
bacterial actin molecules.
Length = 362
Score = 28.4 bits (63), Expect = 1.9
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 19 KGGIAKLTREIDSRHPPRPQPAVDPDE----REGDEIETEPV-VSAEVDMLDSLTG 69
KGG E PP+P V DE R GD T V A LD+L G
Sbjct: 166 KGGPPYCECEECKSEPPKPIVRVTLDEWADFRCGDPWPTRGTPVRALGRSLDTLPG 221
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human
Gammaherpesvirus that infects and establishes latency
in B lymphocytes in vivo. The latent membrane protein 2
(LMP2) gene is expressed in latently infected B cells
and encodes two protein isoforms, LMP2A and LMP2B, that
are identical except for an additional N-terminal 119
aa cytoplasmic domain which is present in the LMP2A
isoform. LMP2A is thought to play a key role in either
the establishment or the maintenance of latency and/or
the reactivation of productive infection from the
latent state. The significance of LMP2B and its role in
pathogenesis remain unclear.
Length = 489
Score = 27.9 bits (62), Expect = 2.4
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 28 EIDSRHPPRPQPAVDPDEREGDEIETEPVVSAE 60
E+ P+ PD EGD P
Sbjct: 5 EMQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGS 37
>gnl|CDD|149418 pfam08349, DUF1722, Protein of unknown function (DUF1722). This
domain of unknown function is found in bacteria and
archaea and is homologous to the hypothetical protein
ybgA from E. coli.
Length = 117
Score = 25.9 bits (58), Expect = 5.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 117 FLKDKNASSREKDLIKSVKDEVLARNIPGKVKLSAPQTLL 156
+ K K SS EK + E++ + G V L P TLL
Sbjct: 61 YFK-KQLSSEEKQELL----ELIEQYREGLVPLVVPLTLL 95
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 25.3 bits (56), Expect = 9.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 22 IAKLTREIDSRHPPRPQPAVDPDEREGDEIETEPVVSAE------VDMLDS 66
IA+L I + R P + ++ + DE + EP VS +DML +
Sbjct: 46 IARLEAAI-AAEEARRAPPAEDEDDDEDEEDEEPAVSLAQRAYPLIDMLRA 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.129 0.353
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,024,846
Number of extensions: 725948
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 17
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.0 bits)