RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4692
         (162 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.13
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 49  DEIETEPVV-SAEVDMLDSLTGQPCNEDELL--FAVPVVAPYVTLTNYKYKVKL------ 99
             I+TE    S    M      +  N++++   + V  + PY+ L     +++       
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 100 --MPGTGKRGKASKTAQNIFLKDKN 122
             + G+GK   A     +  ++ K 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKM 180


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.19
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 12/36 (33%)

Query: 127 EKDLIKSVKDEVLARNIPGKVKLSAPQT---LLLKA 159
           EK  +K ++           +KL A  +   L +KA
Sbjct: 18  EKQALKKLQ---------ASLKLYADDSAPALAIKA 44



 Score = 27.2 bits (59), Expect = 1.9
 Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)

Query: 18 EKGGIAKLTREIDSRHPPRPQPAV 41
          EK  + KL   +   +     PA+
Sbjct: 18 EKQALKKLQASL-KLYADDSAPAL 40


>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion;
           2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
          Length = 189

 Score = 26.4 bits (57), Expect = 4.2
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 57  VSAEVDMLDSLTGQPCNEDELLFAVPVVAPYVTLTNYKYKVKLMPGTGK 105
           ++ EV   D L       D +   V    P + L   ++K+K   G G 
Sbjct: 1   MATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGT 48


>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
           genomics, isomerase, structural GE consortium, SGC;
           2.40A {Plasmodium falciparum}
          Length = 214

 Score = 26.3 bits (58), Expect = 5.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 23  AKLTREIDSRHPPRPQPAVDPDEREGDEIETEPVVSAE 60
           AK T  I S++ P      DP+  EG     +P+    
Sbjct: 80  AKETANIISKYFPDANLINDPNLNEGTPYLPDPLPRHS 117


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0826    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,336,667
Number of extensions: 133185
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 12
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.0 bits)