RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4692
         (162 letters)



>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine
          infectious anemia virus [TaxId: 11665]}
          Length = 131

 Score = 25.9 bits (57), Expect = 1.6
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 19 KGGIAKLTREIDSRHP----PRPQPAVDPDEREGDEI 51
             I K+  + D+RHP    P   P   P       I
Sbjct: 55 LDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFI 91


>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human
           immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 145

 Score = 25.9 bits (57), Expect = 1.7
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 19  KGGIAKLTREIDSRHPPRPQ---PAVDPDEREGDEIETEPVVSAEVDMLDS 66
           K  I +   E D  HP       P    + R  D   T   +  ++  +  
Sbjct: 70  KETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTH 120


>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491,
          N-terminal domain {Archaeon Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 76

 Score = 25.0 bits (55), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 40 AVDPDE----REGDEIETEPVVSAEVDMLDSLTGQPCNEDEL 77
           VDP      +EG E+  E +++AE    D+  G+  + DEL
Sbjct: 18 LVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDEL 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 556,195
Number of extensions: 24426
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 5
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (22.8 bits)