BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4694
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin
Ii, Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin
Ii, Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 2 SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGF 36
SWQ YVD L+ + VT+AAI GHDGN WA S GF
Sbjct: 1 SWQTYVDTNLVGTGAVTQAAIIGHDGNTWATSAGF 35
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 2 SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGF 36
SWQ YVD L+ + VT+AAI G DGN WA S GF
Sbjct: 1 SWQTYVDTNLVGTGAVTQAAILGLDGNTWATSAGF 35
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 2 SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGF 36
SWQ YVD L+ + VT+AAI G DGN WA S GF
Sbjct: 1 SWQTYVDTNLVGTGAVTQAAILGLDGNTWATSAGF 35
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Query: 1 MSWQDYVDKQLL-----ASRCVTKAAIAGHDGNVWAKSDGFEGLRCSSRYRPQK 49
MSWQ YVD+ L+ + +AI GHDG+VWA+S F +++PQ+
Sbjct: 1 MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSF------PQFKPQE 48
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 1 MSWQDYVDKQLL---ASRCVTKAAIAGHDGNVWAKSDGF 36
MSWQ YVD L+ +T AAI GHDG+VWA+S F
Sbjct: 1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSF 39
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 1 MSWQDYVDKQLL---ASRCVTKAAIAGHDGNVWAKSDGFEGLR 40
MSWQ YVD L+ +T AAI G DG+VWA+S F L+
Sbjct: 1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLK 43
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1 MSWQDYVDKQLLASRCVTKAAIAGHDGN-VWAKSDGF 36
MSWQ YVD LL + + +AAI G+ VWA S GF
Sbjct: 1 MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGF 37
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 2 SWQDYVDKQL---LASRCVTKAAIAGHDGNVWAKSDGFEGLR 40
SWQ YVD L + +T AAI G DG+VWA+S F L+
Sbjct: 1 SWQSYVDDHLXCDVEGNHLTAAAILGQDGSVWAQSAKFPQLK 42
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 3 WQDYVDKQLLASRCVTKAAIAGH----DGNVWAKSDGFEGLRCSSRYRPQKCEH 52
W Y D+Q ASR V + + DG V A D LR RY PQ EH
Sbjct: 139 WTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR--FRYFPQVPEH 190
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 3 WQDYVDKQLLASRCVTKAAIAGH----DGNVWAKSDGFEGLRCSSRYRPQKCEH 52
W Y D+Q ASR V + + DG V A D LR RY PQ EH
Sbjct: 119 WTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR--FRYFPQVPEH 170
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 3 WQDYVDKQLLASRCVTKAAIAGH----DGNVWAKSDGFEGLRCSSRYRPQKCEH 52
W Y D+Q ASR V + + DG V A D LR RY PQ EH
Sbjct: 119 WTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR--FRYFPQVPEH 170
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 3 WQDYVDKQLLASRCVTKAAIAGH----DGNVWAKSDGFEGLRCSSRYRPQKCEH 52
W Y D+Q ASR V + + DG V A D LR RY PQ EH
Sbjct: 119 WTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR--FRYFPQVPEH 170
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 3 WQDYVDKQLLASRCVTKAAIAGH----DGNVWAKSDGFEGLRCSSRYRPQKCEH 52
W Y D+Q ASR V + + DG V A D LR RY PQ EH
Sbjct: 119 WTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR--FRYFPQVPEH 170
>pdb|2JKF|A Chain A, Plasmodium Falciparum Profilin
pdb|2JKG|A Chain A, Plasmodium Falciparum Profilin
Length = 179
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 2 SWQDYVDKQLLASRCVTKAAIAG-HDGNVWA 31
SW Y++ +LLA+ V+ A +A DG V+A
Sbjct: 6 SWDSYLNDRLLATNQVSGAGLASEEDGVVYA 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,339,323
Number of Sequences: 62578
Number of extensions: 73973
Number of successful extensions: 140
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 15
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)