Query psy4694
Match_columns 74
No_of_seqs 102 out of 330
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:29:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00316 profilin; Provisional 100.0 1.2E-30 2.6E-35 174.6 7.0 70 1-70 1-73 (150)
2 smart00392 PROF Profilin. Bind 99.9 1.8E-27 3.8E-32 154.2 7.1 71 1-71 1-76 (129)
3 cd00148 PROF Profilin binds ac 99.9 2.7E-27 5.9E-32 153.3 7.1 70 2-71 1-74 (127)
4 KOG1755|consensus 99.9 8.6E-27 1.9E-31 152.6 6.2 71 1-71 1-74 (128)
5 PF00235 Profilin: Profilin; 99.9 1.2E-24 2.6E-29 138.0 6.0 70 2-71 1-73 (121)
6 PF05228 CHASE4: CHASE4 domain 66.2 22 0.00048 22.3 5.0 66 5-70 34-117 (161)
7 PF01509 TruB_N: TruB family p 65.6 6.4 0.00014 26.1 2.4 41 26-66 60-105 (149)
8 PF02770 Acyl-CoA_dh_M: Acyl-C 65.1 4.8 0.0001 21.7 1.5 15 55-69 23-37 (52)
9 PF10144 SMP_2: Bacterial viru 59.3 14 0.00031 25.9 3.4 30 5-35 76-105 (210)
10 TIGR01664 DNA-3'-Pase DNA 3'-p 50.0 15 0.00033 24.2 2.2 30 15-44 10-41 (166)
11 PF08816 Ivy: Inhibitor of ver 47.7 24 0.00053 22.7 2.8 19 55-73 34-52 (118)
12 PF07494 Reg_prop: Two compone 43.9 34 0.00074 15.6 2.3 16 20-35 9-24 (24)
13 PLN03098 LPA1 LOW PSII ACCUMUL 43.7 26 0.00056 27.6 2.9 33 3-35 395-430 (453)
14 PF13856 Gifsy-2: ATP-binding 43.0 31 0.00066 20.7 2.6 21 51-71 64-84 (95)
15 cd08993 GH43_DUF377 Glycosyl h 42.5 26 0.00056 24.3 2.5 51 17-67 199-251 (268)
16 PF13623 SurA_N_2: SurA N-term 41.1 9.8 0.00021 25.1 0.2 30 3-47 86-115 (145)
17 COG2152 Predicted glycosylase 37.4 60 0.0013 24.5 3.8 50 19-68 235-286 (314)
18 PRK09993 C-lysozyme inhibitor; 37.1 25 0.00055 23.9 1.7 19 55-73 64-82 (153)
19 PF09176 Mpt_N: Methylene-tetr 36.1 18 0.0004 22.1 0.8 29 37-65 20-53 (81)
20 PF13778 DUF4174: Domain of un 33.9 57 0.0012 20.5 2.9 32 18-50 80-111 (118)
21 PHA02102 hypothetical protein 32.3 41 0.00089 20.0 1.9 19 16-34 53-71 (72)
22 PRK11246 hypothetical protein; 31.3 77 0.0017 22.7 3.5 26 10-35 80-105 (218)
23 COG1582 FlgEa Uncharacterized 30.9 34 0.00073 20.2 1.3 11 59-69 31-41 (67)
24 KOG1176|consensus 30.2 56 0.0012 25.9 2.9 43 7-49 446-496 (537)
25 PF13986 DUF4224: Domain of un 28.9 19 0.00042 19.4 0.1 25 37-61 2-31 (47)
26 PF14827 Cache_3: Sensory doma 28.8 45 0.00096 20.4 1.7 30 4-34 27-56 (116)
27 PF11429 Colicin_D: Colicin D; 28.5 29 0.00063 21.6 0.8 23 18-43 61-83 (92)
28 PF11889 DUF3409: Domain of un 26.8 50 0.0011 18.8 1.5 15 55-69 36-50 (56)
29 PF03259 Robl_LC7: Roadblock/L 26.5 1.3E+02 0.0028 16.8 5.2 24 9-32 7-30 (91)
30 cd02573 PseudoU_synth_EcTruB P 26.0 69 0.0015 23.4 2.5 40 26-65 80-124 (277)
31 PF15603 Imm45: Immunity prote 25.9 53 0.0012 19.9 1.7 41 21-61 37-79 (82)
32 cd00506 PseudoU_synth_TruB_lik 25.8 67 0.0015 22.5 2.3 40 26-65 80-124 (210)
33 PF13540 RCC1_2: Regulator of 25.7 78 0.0017 15.0 2.0 16 18-33 9-24 (30)
34 PF02866 Ldh_1_C: lactate/mala 25.2 62 0.0013 21.2 2.0 33 17-50 128-160 (174)
35 PF09299 Mu-transpos_C: Mu tra 24.9 27 0.00059 19.2 0.2 19 52-70 11-29 (62)
36 PF04312 DUF460: Protein of un 24.1 94 0.002 20.8 2.7 33 14-46 39-71 (138)
37 COG3726 AhpA Uncharacterized m 23.1 47 0.001 23.7 1.1 27 10-36 80-106 (214)
38 TIGR01663 PNK-3'Pase polynucle 22.9 45 0.00097 26.5 1.1 30 15-44 165-196 (526)
39 PRK03287 truB tRNA pseudouridi 22.8 69 0.0015 23.7 2.0 40 26-65 89-133 (298)
40 PF04041 DUF377: Domain of unk 22.7 1.1E+02 0.0024 22.3 3.1 52 17-68 233-287 (312)
41 TIGR00683 nanA N-acetylneurami 22.6 90 0.002 22.3 2.6 40 4-50 24-63 (290)
42 PRK02755 truB tRNA pseudouridi 22.1 76 0.0017 23.4 2.1 40 26-65 82-126 (295)
43 PF03829 PTSIIA_gutA: PTS syst 22.1 1.1E+02 0.0024 19.5 2.6 18 55-72 54-71 (117)
44 COG4257 Vgb Streptogramin lyas 21.9 97 0.0021 23.6 2.6 25 12-36 100-124 (353)
45 PF04827 Plant_tran: Plant tra 21.8 42 0.00092 23.8 0.7 49 21-69 63-117 (205)
46 COG2089 SpsE Sialic acid synth 21.3 68 0.0015 24.5 1.8 41 9-50 290-330 (347)
47 PRK02193 truB tRNA pseudouridi 21.1 72 0.0016 23.4 1.8 40 26-65 80-124 (279)
48 COG4667 Predicted esterase of 20.6 2.1E+02 0.0047 21.4 4.2 28 40-67 140-167 (292)
49 PF02911 Formyl_trans_C: Formy 20.6 1.9E+02 0.0041 16.7 3.4 36 35-71 10-45 (100)
50 PF14584 DUF4446: Protein of u 20.6 87 0.0019 20.9 2.0 29 21-49 116-150 (151)
51 KOG1794|consensus 20.3 92 0.002 23.7 2.3 23 13-35 10-33 (336)
No 1
>PTZ00316 profilin; Provisional
Probab=99.97 E-value=1.2e-30 Score=174.64 Aligned_cols=70 Identities=29% Similarity=0.381 Sum_probs=66.9
Q ss_pred CChHHHHhhhhhcccccCeeEEEcc-CCceeeecCCCccChhhhchhhhhc--cccccccceEECCEEEEEEe
Q psy4694 1 MSWQDYVDKQLLASRCVTKAAIAGH-DGNVWAKSDGFEGLRCSSRYRPQKC--EHYLYSATIGTLNVKYITSI 70 (74)
Q Consensus 1 MsWq~Yvd~~Li~~~~v~~aAIig~-dG~vWA~s~gf~is~~E~~~i~~~f--~~~~~~~Gi~~~g~KY~v~~ 70 (74)
||||+|||++|+++|++++|||+|+ ||++||+|+||+++|+|++.|+++| ++.+..+||+++|+||++.|
T Consensus 1 MSWQaYVD~~L~gsg~v~kAAIiG~~DGsvWA~S~gF~lspeE~~~I~~~F~d~~~l~~~Gi~l~G~KY~~lr 73 (150)
T PTZ00316 1 MSWQAYVDDSLIGSGNMHSAAIVGLADGSYWAYGGSYIPQPEEVAHILKCLGNFSLVQSSGVTIYGVKFFGLQ 73 (150)
T ss_pred CCHHHHHHhhhhccCCcceEEEEecCCCCEeecCCCCccCHHHHHHHHHHhcCCccccCCCEEEcceEEEEEE
Confidence 9999999999999999999999998 9999999999999999999999999 55688899999999999976
No 2
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=99.94 E-value=1.8e-27 Score=154.20 Aligned_cols=71 Identities=37% Similarity=0.547 Sum_probs=66.4
Q ss_pred CChHHHHhhhhhcccccCeeEEEccCCceeeecCC--C-ccChhhhchhhhhccc--cccccceEECCEEEEEEee
Q psy4694 1 MSWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDG--F-EGLRCSSRYRPQKCEH--YLYSATIGTLNVKYITSIV 71 (74)
Q Consensus 1 MsWq~Yvd~~Li~~~~v~~aAIig~dG~vWA~s~g--f-~is~~E~~~i~~~f~~--~~~~~Gi~~~g~KY~v~~~ 71 (74)
||||+|||++|++++++++|||+|+||++||+|+| | .++|+|++.|+..|.+ .++.+||+++|+||++.+.
T Consensus 1 MsWq~yvd~~l~~~g~~~~AaI~g~dGsvWA~s~g~~f~~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~Ky~~~~~ 76 (129)
T smart00392 1 MSWQAYVDNLLVGSGCVDAAAIGGKDGSVWAASAGGNFQKITPEEIAAIAALFNSLAAVFSNGLTLGGQKYMVIRA 76 (129)
T ss_pred CChHHHHHHHhhccCCCcEEEEEeCCCCeeeccCCCCCCcCCHHHHHHHHHHccCcchhccCCeEECCeEEEEEEe
Confidence 99999999999999999999999999999999999 8 5899999999999954 4788999999999999874
No 3
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=99.94 E-value=2.7e-27 Score=153.28 Aligned_cols=70 Identities=36% Similarity=0.508 Sum_probs=65.8
Q ss_pred ChHHHHhhhhhcccccCeeEEEccC-CceeeecCC-CccChhhhchhhhhcc--ccccccceEECCEEEEEEee
Q psy4694 2 SWQDYVDKQLLASRCVTKAAIAGHD-GNVWAKSDG-FEGLRCSSRYRPQKCE--HYLYSATIGTLNVKYITSIV 71 (74)
Q Consensus 2 sWq~Yvd~~Li~~~~v~~aAIig~d-G~vWA~s~g-f~is~~E~~~i~~~f~--~~~~~~Gi~~~g~KY~v~~~ 71 (74)
|||+|||++|+++|+|++|||+|+| |++||+|+| |+++|+|+++|+++|. +.++.+||+++|+||++.+.
T Consensus 1 sWq~yvd~~L~~~g~~~~aAI~g~d~g~vwA~s~~~f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~ 74 (127)
T cd00148 1 SWQAYVDDNLLGTGKVDSAAIVGHDDGSVWAASAGGFNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRA 74 (127)
T ss_pred ChHHHHHHHHhhcCCcCEEEEEecCCCCeEEecCCCCccCHHHHHHHHHHccCccccccCCEEECCeEEEEEec
Confidence 8999999889999999999999997 999999999 9999999999999994 46788999999999999874
No 4
>KOG1755|consensus
Probab=99.94 E-value=8.6e-27 Score=152.56 Aligned_cols=71 Identities=37% Similarity=0.466 Sum_probs=67.1
Q ss_pred CChHHHHhhhhhcccccCeeEEEccCC-ceeeecCCCccChhhhchhhhhc--cccccccceEECCEEEEEEee
Q psy4694 1 MSWQDYVDKQLLASRCVTKAAIAGHDG-NVWAKSDGFEGLRCSSRYRPQKC--EHYLYSATIGTLNVKYITSIV 71 (74)
Q Consensus 1 MsWq~Yvd~~Li~~~~v~~aAIig~dG-~vWA~s~gf~is~~E~~~i~~~f--~~~~~~~Gi~~~g~KY~v~~~ 71 (74)
||||+|||++|+++++|++|||+|.|| +|||+|+||+++|+|+..++..| ++.+..+|++|+|+||+|++.
T Consensus 1 ~~Wq~Yvd~~l~~~~~v~~AAIvg~~~~SVWA~S~~f~~~~~e~~~~v~~F~d~~~~~~~Gl~L~Gqkylv~~g 74 (128)
T KOG1755|consen 1 MSWQAYVDDHLLGTGHVTRAAIVGYDGGSVWAASAGFNVKPSEIPAIVAGFKDPGGLAGTGLTLGGQKYLVVRG 74 (128)
T ss_pred CCHHHHHHHhhccccccceeeEEecCCCeeEEecCCCcccHHHHHHHHhcccCcccccccceeecccEEEEEec
Confidence 899999999999999999999999955 99999999999999999999999 566888999999999999875
No 5
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=99.91 E-value=1.2e-24 Score=137.95 Aligned_cols=70 Identities=39% Similarity=0.535 Sum_probs=64.9
Q ss_pred ChHHHHhhhhhcccccCeeEEEccCCceeeecCCC-ccChhhhchhhhhcc--ccccccceEECCEEEEEEee
Q psy4694 2 SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGF-EGLRCSSRYRPQKCE--HYLYSATIGTLNVKYITSIV 71 (74)
Q Consensus 2 sWq~Yvd~~Li~~~~v~~aAIig~dG~vWA~s~gf-~is~~E~~~i~~~f~--~~~~~~Gi~~~g~KY~v~~~ 71 (74)
|||+|||++|++++++++|||+|.||++||++++| +++|+|++.|+..|. ..++.+||+++|+||++.|.
T Consensus 1 sW~~~i~~~L~~~~~~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~~ 73 (121)
T PF00235_consen 1 SWQDYIDEQLIGTGNITKAAIIGSDGSVWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLRA 73 (121)
T ss_dssp THHHHHHTHHHTTSSESEEEEEETTSSEEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEEE
T ss_pred ChhHHHHHHhcccCcEeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEec
Confidence 89999997899999999999999999999999999 999999999999994 45788999999999999874
No 6
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=66.17 E-value=22 Score=22.28 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHhhhhh----cccccCeeEEEccCC-ceeeecCCCccChh-------hhchhhhhcc-----ccccccce-EECCEEE
Q psy4694 5 DYVDKQLL----ASRCVTKAAIAGHDG-NVWAKSDGFEGLRC-------SSRYRPQKCE-----HYLYSATI-GTLNVKY 66 (74)
Q Consensus 5 ~Yvd~~Li----~~~~v~~aAIig~dG-~vWA~s~gf~is~~-------E~~~i~~~f~-----~~~~~~Gi-~~~g~KY 66 (74)
+|+++++- .+-.++..+|++.|| -+|+.+.|....+. ++..++.... ......|+ .++|.-|
T Consensus 34 ~~~~~N~~~~~~~~~~~d~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 113 (161)
T PF05228_consen 34 DWIDENLGPELFENFGLDLIFILDPDGRVLYSSSKGYDFEPGSFDPIPPSLSQLISDLRALSPSNPSSASGLVRIDGGPA 113 (161)
T ss_pred HHHHHhcChhhhhhcCccEEEEEcCCCCEEEEeccCcccCccccccccHHHHHHHHHHHhhccccCCceEEEEEECCeEE
Confidence 46665443 467899999999999 78877777654433 3444433221 12234554 3477777
Q ss_pred EEEe
Q psy4694 67 ITSI 70 (74)
Q Consensus 67 ~v~~ 70 (74)
+++.
T Consensus 114 lvaa 117 (161)
T PF05228_consen 114 LVAA 117 (161)
T ss_pred EEEE
Confidence 7654
No 7
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=65.60 E-value=6.4 Score=26.10 Aligned_cols=41 Identities=7% Similarity=-0.166 Sum_probs=28.2
Q ss_pred CCceeeecCCCccChhhhchhhhhc-----cccccccceEECCEEE
Q psy4694 26 DGNVWAKSDGFEGLRCSSRYRPQKC-----EHYLYSATIGTLNVKY 66 (74)
Q Consensus 26 dG~vWA~s~gf~is~~E~~~i~~~f-----~~~~~~~Gi~~~g~KY 66 (74)
+|.+....+-..++.+++...+..| +.+.....+.++|++-
T Consensus 60 ~G~v~~~~~~~~it~e~l~~~l~~f~G~~~Q~pP~ySAvki~G~ra 105 (149)
T PF01509_consen 60 EGEVTETKPYDHITEEDLEKVLAKFQGEIEQVPPMYSAVKINGKRA 105 (149)
T ss_dssp TSSEEEE---TT--HHHHHHHHHHTSEEEEES-SSSSSSECTTCEH
T ss_pred eeeEEEeeccccCCHHHHHHHHHhCcCCEeeeCchheeEcCCCccH
Confidence 5789998888899999999999998 3344568888888763
No 8
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=65.12 E-value=4.8 Score=21.68 Aligned_cols=15 Identities=13% Similarity=-0.197 Sum_probs=13.2
Q ss_pred cccceEECCEEEEEE
Q psy4694 55 YSATIGTLNVKYITS 69 (74)
Q Consensus 55 ~~~Gi~~~g~KY~v~ 69 (74)
...|+.|+|+|++++
T Consensus 23 ~~~~~~L~G~K~~v~ 37 (52)
T PF02770_consen 23 DGDGYVLNGEKRFVS 37 (52)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ccceEEEeeEEEEEC
Confidence 358899999999997
No 9
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=59.30 E-value=14 Score=25.91 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.6
Q ss_pred HHHhhhhhcccccCeeEEEccCCceeeecCC
Q psy4694 5 DYVDKQLLASRCVTKAAIAGHDGNVWAKSDG 35 (74)
Q Consensus 5 ~Yvd~~Li~~~~v~~aAIig~dG~vWA~s~g 35 (74)
..+++ |..+..|-+|+|++.+|..-|.|..
T Consensus 76 ~ll~~-L~~d~~VldAsIYd~~G~lLA~S~~ 105 (210)
T PF10144_consen 76 QLLNQ-LAKDPFVLDASIYDADGVLLAQSGE 105 (210)
T ss_pred HHHHH-HhcCCeEeEEEEECCCCCEEEEcCC
Confidence 34554 8889999999999999999999975
No 10
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=50.05 E-value=15 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=21.0
Q ss_pred cccCeeEEEccCCceeeecCC--CccChhhhc
Q psy4694 15 RCVTKAAIAGHDGNVWAKSDG--FEGLRCSSR 44 (74)
Q Consensus 15 ~~v~~aAIig~dG~vWA~s~g--f~is~~E~~ 44 (74)
....+.+++++||.+|....+ +..+|++.+
T Consensus 10 ~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~ 41 (166)
T TIGR01664 10 KPQSKVAAFDLDGTLITTRSGKVFPTSASDWR 41 (166)
T ss_pred CCcCcEEEEeCCCceEecCCCCcccCChHHeE
Confidence 345788999999999986543 445665554
No 11
>PF08816 Ivy: Inhibitor of vertebrate lysozyme (Ivy); InterPro: IPR014453 C-type lysozyme enzymes, such as hen egg white lysozyme (HEWL), provide anti-bacterial activity by cleaving peptidoglycan in Gram-positive bacterial cell walls. In humans, C-type lysozyme is found in all secretions, including tears and saliva. Certain Gram-positive bacteria can produce proteins with anti-lysozyme activity known as Inhibitor of Vertebrate Lysozyme (IVY), which act as virulence factors [, ]. IVY proteins have a 3-layer alpha(2)/beta(5)/alpha(2) topology, and contain a protruding 5-residue loop that is essential for their inhibitory effect [].; GO: 0043086 negative regulation of catalytic activity, 0042597 periplasmic space; PDB: 1GPQ_A 1XS0_A 1UUZ_B.
Probab=47.69 E-value=24 Score=22.72 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=16.4
Q ss_pred cccceEECCEEEEEEeeec
Q psy4694 55 YSATIGTLNVKYITSIVCN 73 (74)
Q Consensus 55 ~~~Gi~~~g~KY~v~~~~~ 73 (74)
..+-+.++|++|.|..+|-
T Consensus 34 P~~~V~~~G~~Y~v~~~Ck 52 (118)
T PF08816_consen 34 PMEAVTIDGKPYLVGSACK 52 (118)
T ss_dssp EEEEEEETTEEEEEEEEE-
T ss_pred CCeeEEECCEEEEEecccc
Confidence 5677999999999999995
No 12
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=43.90 E-value=34 Score=15.58 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=10.7
Q ss_pred eEEEccCCceeeecCC
Q psy4694 20 AAIAGHDGNVWAKSDG 35 (74)
Q Consensus 20 aAIig~dG~vWA~s~g 35 (74)
+...+.+|.+|..+.|
T Consensus 9 ~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 9 SIYEDSDGNLWIGTYN 24 (24)
T ss_dssp EEEE-TTSCEEEEETS
T ss_pred EEEEcCCcCEEEEeCC
Confidence 4445568999988754
No 13
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=43.68 E-value=26 Score=27.58 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=22.3
Q ss_pred hHHHHhhhhhcccc---cCeeEEEccCCceeeecCC
Q psy4694 3 WQDYVDKQLLASRC---VTKAAIAGHDGNVWAKSDG 35 (74)
Q Consensus 3 Wq~Yvd~~Li~~~~---v~~aAIig~dG~vWA~s~g 35 (74)
|..||+++...+|. .+--.++++||.||.+-.|
T Consensus 395 W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~G 430 (453)
T PLN03098 395 WERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRG 430 (453)
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCCC
Confidence 99999985543221 1223455569999998877
No 14
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=42.99 E-value=31 Score=20.74 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=14.5
Q ss_pred cccccccceEECCEEEEEEee
Q psy4694 51 EHYLYSATIGTLNVKYITSIV 71 (74)
Q Consensus 51 ~~~~~~~Gi~~~g~KY~v~~~ 71 (74)
+.+-+..-+.++|++|.|.+.
T Consensus 64 ~~P~~gd~v~~dG~~y~V~~~ 84 (95)
T PF13856_consen 64 PKPRRGDRVVIDGESYTVTRF 84 (95)
T ss_dssp ----TT-EEEETTEEEEEEEE
T ss_pred CCCCCCCEEEECCeEEEEeEE
Confidence 446677889999999999875
No 15
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=42.49 E-value=26 Score=24.28 Aligned_cols=51 Identities=12% Similarity=-0.122 Sum_probs=36.4
Q ss_pred cCeeEEEcc-C-CceeeecCCCccChhhhchhhhhccccccccceEECCEEEE
Q psy4694 17 VTKAAIAGH-D-GNVWAKSDGFEGLRCSSRYRPQKCEHYLYSATIGTLNVKYI 67 (74)
Q Consensus 17 v~~aAIig~-d-G~vWA~s~gf~is~~E~~~i~~~f~~~~~~~Gi~~~g~KY~ 67 (74)
.-.+|++++ | ..+|++++.--+.|++.-++.+..++.++.+|+...+-+.+
T Consensus 199 ~~g~~lld~~dp~~~~~~~~~p~l~p~~~~e~~G~~~~vvf~~g~~~~~~~~~ 251 (268)
T cd08993 199 RLGAALLDLEDPTKVIARSRRPLLEPETDYETGGFIPNVVFPCGALEKDGSVY 251 (268)
T ss_pred eeeEEEEcccCchHHhcccCCceecCCcccccccccCCEEEECceEeeCCEEE
Confidence 345667776 4 35999999988888876677776688888888875443343
No 16
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=41.11 E-value=9.8 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=23.7
Q ss_pred hHHHHhhhhhcccccCeeEEEccCCceeeecCCCccChhhhchhh
Q psy4694 3 WQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGFEGLRCSSRYRP 47 (74)
Q Consensus 3 Wq~Yvd~~Li~~~~v~~aAIig~dG~vWA~s~gf~is~~E~~~i~ 47 (74)
|+++|++.|+.... ..-|+.++++|+..++
T Consensus 86 W~~~V~~~ll~~e~---------------eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 86 WNQMVQNILLEQEF---------------EKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHHHHHHHHH---------------HHhCCccCHHHHHHHH
Confidence 99999987885432 3358899999999988
No 17
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=37.36 E-value=60 Score=24.48 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=43.0
Q ss_pred eeEEEccCC--ceeeecCCCccChhhhchhhhhccccccccceEECCEEEEE
Q psy4694 19 KAAIAGHDG--NVWAKSDGFEGLRCSSRYRPQKCEHYLYSATIGTLNVKYIT 68 (74)
Q Consensus 19 ~aAIig~dG--~vWA~s~gf~is~~E~~~i~~~f~~~~~~~Gi~~~g~KY~v 68 (74)
.||.+++++ -+-+.|++.-+.|+|.-..-+.+.+-.+.+|+..-|-+.++
T Consensus 235 GaALlDledp~kvl~rS~~~IleP~~~yE~~Gdv~~VVF~CG~v~~~~~l~i 286 (314)
T COG2152 235 GAALLDLEDPTKVLARSPEYILEPEELYERYGDVPNVVFPCGAVLLGDELLI 286 (314)
T ss_pred eeEEEcCCCCcEEEecCCccccCccchhhhcCCcCcEEeecceEEECCEEEE
Confidence 588899854 89999999999999999999998888888998887777655
No 18
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=37.08 E-value=25 Score=23.87 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.8
Q ss_pred cccceEECCEEEEEEeeec
Q psy4694 55 YSATIGTLNVKYITSIVCN 73 (74)
Q Consensus 55 ~~~Gi~~~g~KY~v~~~~~ 73 (74)
+.+-+.++|++|+|..+|.
T Consensus 64 P~~~V~~~G~~YlVg~~CK 82 (153)
T PRK09993 64 PAQTVTLGDETYQVMSACK 82 (153)
T ss_pred chhheeeCCceEEEecccc
Confidence 4677999999999999995
No 19
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=36.09 E-value=18 Score=22.14 Aligned_cols=29 Identities=14% Similarity=-0.207 Sum_probs=19.9
Q ss_pred ccChhhhchhhhh--c---cccccccceEECCEE
Q psy4694 37 EGLRCSSRYRPQK--C---EHYLYSATIGTLNVK 65 (74)
Q Consensus 37 ~is~~E~~~i~~~--f---~~~~~~~Gi~~~g~K 65 (74)
+++++|+..|+.. | +..+..+||-++|..
T Consensus 20 ~V~~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d 53 (81)
T PF09176_consen 20 GVTPDEVRGLVQDAIFSRGPKDLKRTAIFIGGRD 53 (81)
T ss_dssp S--TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-
T ss_pred CcCHHHhhhhhcceeEccCCcCCceeEEEECCcc
Confidence 5889999999976 4 345678999999863
No 20
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=33.89 E-value=57 Score=20.46 Aligned_cols=32 Identities=13% Similarity=-0.126 Sum_probs=25.2
Q ss_pred CeeEEEccCCceeeecCCCccChhhhchhhhhc
Q psy4694 18 TKAAIAGHDGNVWAKSDGFEGLRCSSRYRPQKC 50 (74)
Q Consensus 18 ~~aAIig~dG~vWA~s~gf~is~~E~~~i~~~f 50 (74)
-....||.||.+-... +..++++|+-.+++++
T Consensus 80 f~~vLiGKDG~vK~r~-~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 80 FTVVLIGKDGGVKLRW-PEPIDPEELFDTIDAM 111 (118)
T ss_pred eEEEEEeCCCcEEEec-CCCCCHHHHHHHHhCC
Confidence 5688999999888774 4456888888888876
No 21
>PHA02102 hypothetical protein
Probab=32.33 E-value=41 Score=19.96 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=13.8
Q ss_pred ccCeeEEEccCCceeeecC
Q psy4694 16 CVTKAAIAGHDGNVWAKSD 34 (74)
Q Consensus 16 ~v~~aAIig~dG~vWA~s~ 34 (74)
.-.+|-.+..||+||-.|.
T Consensus 53 Eg~eaF~~~SDGsvWm~Ss 71 (72)
T PHA02102 53 EGGEAFVARSDGSVWMPSS 71 (72)
T ss_pred cccceeeeccCCcEeccCC
Confidence 3456777777999998663
No 22
>PRK11246 hypothetical protein; Provisional
Probab=31.29 E-value=77 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.5
Q ss_pred hhhcccccCeeEEEccCCceeeecCC
Q psy4694 10 QLLASRCVTKAAIAGHDGNVWAKSDG 35 (74)
Q Consensus 10 ~Li~~~~v~~aAIig~dG~vWA~s~g 35 (74)
+|.....|-+|.|++.||..-|.|..
T Consensus 80 ~La~d~~VlDAsIY~~~G~llA~S~~ 105 (218)
T PRK11246 80 QLTDESRILDASVYDEQGDLIARSGE 105 (218)
T ss_pred HHhcCCceeeEEEECCCCCEEEecCC
Confidence 48888999999999999999999885
No 23
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=30.85 E-value=34 Score=20.24 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=8.6
Q ss_pred eEECCEEEEEE
Q psy4694 59 IGTLNVKYITS 69 (74)
Q Consensus 59 i~~~g~KY~v~ 69 (74)
.-++|+||+|-
T Consensus 31 tLinGkkyvVk 41 (67)
T COG1582 31 TLINGKKYVVK 41 (67)
T ss_pred EEEcCcEEEEc
Confidence 35799999984
No 24
>KOG1176|consensus
Probab=30.17 E-value=56 Score=25.93 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=31.5
Q ss_pred HhhhhhcccccCeeEEEccCCceeeecC--------CCccChhhhchhhhh
Q psy4694 7 VDKQLLASRCVTKAAIAGHDGNVWAKSD--------GFEGLRCSSRYRPQK 49 (74)
Q Consensus 7 vd~~Li~~~~v~~aAIig~dG~vWA~s~--------gf~is~~E~~~i~~~ 49 (74)
|+.-|+..-.|.+||.+|.--..|+..| |.+++.+|+...++.
T Consensus 446 iE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k 496 (537)
T KOG1176|consen 446 IEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRK 496 (537)
T ss_pred HHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHh
Confidence 4554556778999999998555565444 678888888877765
No 25
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=28.90 E-value=19 Score=19.43 Aligned_cols=25 Identities=8% Similarity=-0.238 Sum_probs=16.7
Q ss_pred ccChhhhchhhhhcc-----ccccccceEE
Q psy4694 37 EGLRCSSRYRPQKCE-----HYLYSATIGT 61 (74)
Q Consensus 37 ~is~~E~~~i~~~f~-----~~~~~~Gi~~ 61 (74)
-+|++|+..|-+.=+ ..|+.+||.+
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~Gi~~ 31 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRNGIPF 31 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCee
Confidence 378999999887532 2356667654
No 26
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=28.82 E-value=45 Score=20.36 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=22.8
Q ss_pred HHHHhhhhhcccccCeeEEEccCCceeeecC
Q psy4694 4 QDYVDKQLLASRCVTKAAIAGHDGNVWAKSD 34 (74)
Q Consensus 4 q~Yvd~~Li~~~~v~~aAIig~dG~vWA~s~ 34 (74)
|.+++. +...-.++-..|.+.+|-+++.+.
T Consensus 27 q~~~~~-~~~~~~~~~i~v~D~~g~~l~~s~ 56 (116)
T PF14827_consen 27 QALLEQ-LRKESDIDYIVVTDRDGIVLAHSD 56 (116)
T ss_dssp CCHHHH-HHHHCT-SEEEEECTTSBECE-SS
T ss_pred HHHHHH-HHhhcCCeEEEEEcCCCCEEEcCC
Confidence 456665 776677899999999999999886
No 27
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=28.53 E-value=29 Score=21.62 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=13.6
Q ss_pred CeeEEEccCCceeeecCCCccChhhh
Q psy4694 18 TKAAIAGHDGNVWAKSDGFEGLRCSS 43 (74)
Q Consensus 18 ~~aAIig~dG~vWA~s~gf~is~~E~ 43 (74)
..++|++.||.-+ .||.++|...
T Consensus 61 ~~~Vi~d~~G~Fv---sgwkl~p~~~ 83 (92)
T PF11429_consen 61 NNVVIIDKDGNFV---SGWKLSPGSD 83 (92)
T ss_dssp TEEEEE-TTS-EE---EEEE--TTSH
T ss_pred CeEEEEcCCCCEE---EEEecccchH
Confidence 5789999999666 5677775543
No 28
>PF11889 DUF3409: Domain of unknown function (DUF3409); InterPro: IPR021824 This domain is functionally uncharacterised. This domain is found in viruses. This presumed domain is about 60 amino acids in length. This domain is found associated with PF00271 from PFAM, PF05550 from PFAM, PF05578 from PFAM. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=26.78 E-value=50 Score=18.83 Aligned_cols=15 Identities=40% Similarity=0.268 Sum_probs=12.6
Q ss_pred cccceEECCEEEEEE
Q psy4694 55 YSATIGTLNVKYITS 69 (74)
Q Consensus 55 ~~~Gi~~~g~KY~v~ 69 (74)
...-|.+.|+||.|.
T Consensus 36 Pdativv~GvKYQVk 50 (56)
T PF11889_consen 36 PDATIVVDGVKYQVK 50 (56)
T ss_pred CCceEEEeeeEEEEe
Confidence 457799999999985
No 29
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=26.53 E-value=1.3e+02 Score=16.84 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.1
Q ss_pred hhhhcccccCeeEEEccCCceeee
Q psy4694 9 KQLLASRCVTKAAIAGHDGNVWAK 32 (74)
Q Consensus 9 ~~Li~~~~v~~aAIig~dG~vWA~ 32 (74)
+.|.....+..++|++.||.+=++
T Consensus 7 ~~l~~~~gv~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 7 EELQSVPGVRGAVLVDKDGLVIAS 30 (91)
T ss_dssp HHHHHSTTEEEEEEEETTSEEEEE
T ss_pred HHHhCCCCeeEEEEEcCCCCEEEE
Confidence 336677889999999999988888
No 30
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=25.96 E-value=69 Score=23.37 Aligned_cols=40 Identities=5% Similarity=-0.096 Sum_probs=29.1
Q ss_pred CCceeeecCCCccChhhhchhhhhc-----cccccccceEECCEE
Q psy4694 26 DGNVWAKSDGFEGLRCSSRYRPQKC-----EHYLYSATIGTLNVK 65 (74)
Q Consensus 26 dG~vWA~s~gf~is~~E~~~i~~~f-----~~~~~~~Gi~~~g~K 65 (74)
+|.+-..++--.++.+++...+..| +.|.....+.++|++
T Consensus 80 ~G~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvkv~G~r 124 (277)
T cd02573 80 EGEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKVNGKR 124 (277)
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHccCcEEeeCChhHeEeeCCcc
Confidence 5777777765568999999999888 234445777777765
No 31
>PF15603 Imm45: Immunity protein 45
Probab=25.92 E-value=53 Score=19.89 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=29.6
Q ss_pred EEEccCC-ceeeecCC-CccChhhhchhhhhccccccccceEE
Q psy4694 21 AIAGHDG-NVWAKSDG-FEGLRCSSRYRPQKCEHYLYSATIGT 61 (74)
Q Consensus 21 AIig~dG-~vWA~s~g-f~is~~E~~~i~~~f~~~~~~~Gi~~ 61 (74)
-++-+|. .-|..... ..+++.|.+.|+.+....+...|+.+
T Consensus 37 Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v 79 (82)
T PF15603_consen 37 FVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTV 79 (82)
T ss_pred EEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEE
Confidence 3444555 66875443 57999999999999877776677664
No 32
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=25.78 E-value=67 Score=22.49 Aligned_cols=40 Identities=5% Similarity=-0.140 Sum_probs=27.6
Q ss_pred CCceeeecCCCccChhhhchhhhhcc-----ccccccceEECCEE
Q psy4694 26 DGNVWAKSDGFEGLRCSSRYRPQKCE-----HYLYSATIGTLNVK 65 (74)
Q Consensus 26 dG~vWA~s~gf~is~~E~~~i~~~f~-----~~~~~~Gi~~~g~K 65 (74)
+|.+=..++--.++.++++..+..|. .+.....+.++|++
T Consensus 80 ~G~v~~~~~~~~it~e~l~~~l~~f~G~i~Q~pP~ySAvKv~G~r 124 (210)
T cd00506 80 TGQVIEETPYDHITHEQLERALETLTGDIQQVPPLYSAVKRQGQR 124 (210)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHCCCeEEEeCCchheEEECCHh
Confidence 56666666655689999999998883 23334667777655
No 33
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=25.73 E-value=78 Score=15.02 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=11.2
Q ss_pred CeeEEEccCCceeeec
Q psy4694 18 TKAAIAGHDGNVWAKS 33 (74)
Q Consensus 18 ~~aAIig~dG~vWA~s 33 (74)
.+.+++..||.+|+--
T Consensus 9 ~ht~al~~~g~v~~wG 24 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWG 24 (30)
T ss_dssp SEEEEEE-TTEEEEEE
T ss_pred CEEEEEEcCCCEEEEc
Confidence 5778888899887643
No 34
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=25.24 E-value=62 Score=21.17 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=23.7
Q ss_pred cCeeEEEccCCceeeecCCCccChhhhchhhhhc
Q psy4694 17 VTKAAIAGHDGNVWAKSDGFEGLRCSSRYRPQKC 50 (74)
Q Consensus 17 v~~aAIig~dG~vWA~s~gf~is~~E~~~i~~~f 50 (74)
+.--+++|.+| +|..-+++.++++|.+.|....
T Consensus 128 ~s~P~~ig~~G-v~~i~~~~~L~~~E~~~l~~sa 160 (174)
T PF02866_consen 128 FSVPVVIGKNG-VEKIVEDLPLSEEEQEKLKESA 160 (174)
T ss_dssp EEEEEEEETTE-EEEEECSBSSTHHHHHHHHHHH
T ss_pred ecceEEEcCCe-eEEEeCCCCCCHHHHHHHHHHH
Confidence 34446677666 6766677899999988887654
No 35
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=24.90 E-value=27 Score=19.20 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=10.2
Q ss_pred ccccccceEECCEEEEEEe
Q psy4694 52 HYLYSATIGTLNVKYITSI 70 (74)
Q Consensus 52 ~~~~~~Gi~~~g~KY~v~~ 70 (74)
..+...||+++|..|..|.
T Consensus 11 r~v~~~GI~~~~~~Y~~~~ 29 (62)
T PF09299_consen 11 RTVQRGGIRFNGLRYWSPE 29 (62)
T ss_dssp EE--T-TS--EEEEEE-CH
T ss_pred EEEcCCEEEECCeEEECHH
Confidence 3456799999999998764
No 36
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.10 E-value=94 Score=20.76 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=22.2
Q ss_pred ccccCeeEEEccCCceeeecCCCccChhhhchh
Q psy4694 14 SRCVTKAAIAGHDGNVWAKSDGFEGLRCSSRYR 46 (74)
Q Consensus 14 ~~~v~~aAIig~dG~vWA~s~gf~is~~E~~~i 46 (74)
.|....-||+++||.+-.....=+++..|+-.+
T Consensus 39 PG~ttgiAildL~G~~l~l~S~R~~~~~evi~~ 71 (138)
T PF04312_consen 39 PGTTTGIAILDLDGELLDLKSSRNMSRSEVIEW 71 (138)
T ss_pred CCceeEEEEEecCCcEEEEEeecCCCHHHHHHH
Confidence 677888999999997776555444444443333
No 37
>COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only]
Probab=23.10 E-value=47 Score=23.71 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.5
Q ss_pred hhhcccccCeeEEEccCCceeeecCCC
Q psy4694 10 QLLASRCVTKAAIAGHDGNVWAKSDGF 36 (74)
Q Consensus 10 ~Li~~~~v~~aAIig~dG~vWA~s~gf 36 (74)
+|.....|-+|+|.+.||..-|.+..+
T Consensus 80 ql~k~~~VldAsIY~~~g~LlA~ag~~ 106 (214)
T COG3726 80 QLTKESLVLDASIYDEDGDLLARAGSS 106 (214)
T ss_pred HHhhcceeeeceeecccchhHHhcccc
Confidence 477788999999999999999988764
No 38
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=22.94 E-value=45 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=21.6
Q ss_pred cccCeeEEEccCCceeeecCC--CccChhhhc
Q psy4694 15 RCVTKAAIAGHDGNVWAKSDG--FEGLRCSSR 44 (74)
Q Consensus 15 ~~v~~aAIig~dG~vWA~s~g--f~is~~E~~ 44 (74)
..-.++|.+++||.+....+| |.-.+++.+
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~ 196 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQ 196 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCCHHHee
Confidence 345689999999999987665 555555554
No 39
>PRK03287 truB tRNA pseudouridine synthase B; Provisional
Probab=22.78 E-value=69 Score=23.73 Aligned_cols=40 Identities=13% Similarity=-0.028 Sum_probs=28.7
Q ss_pred CCceeeecCCCccChhhhchhhhhc-----cccccccceEECCEE
Q psy4694 26 DGNVWAKSDGFEGLRCSSRYRPQKC-----EHYLYSATIGTLNVK 65 (74)
Q Consensus 26 dG~vWA~s~gf~is~~E~~~i~~~f-----~~~~~~~Gi~~~g~K 65 (74)
+|.+=..++--.++++++...+..| +.+-....+.++|++
T Consensus 89 ~G~v~~~~~~~~it~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr 133 (298)
T PRK03287 89 EGEVLASADASAVTDEAIAAAVAALTGEIMQVPSAVSAIKVDGKR 133 (298)
T ss_pred CCCEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChhHeEEECCHH
Confidence 5777776665468999999999998 233345677777765
No 40
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=22.70 E-value=1.1e+02 Score=22.30 Aligned_cols=52 Identities=13% Similarity=-0.054 Sum_probs=34.2
Q ss_pred cCeeEEEccCC--ceeeecCCCccChhhhchhhhhccccccccce-EECCEEEEE
Q psy4694 17 VTKAAIAGHDG--NVWAKSDGFEGLRCSSRYRPQKCEHYLYSATI-GTLNVKYIT 68 (74)
Q Consensus 17 v~~aAIig~dG--~vWA~s~gf~is~~E~~~i~~~f~~~~~~~Gi-~~~g~KY~v 68 (74)
.-.+|++++|. .+-|.++..-+.|++--++.+..++-++.+|. ...+-++++
T Consensus 233 ~~g~~LlD~~dP~kvi~r~~~pil~P~~~~E~~G~v~nVVF~~g~~~~~~~~~~i 287 (312)
T PF04041_consen 233 RLGAALLDLDDPTKVIARSPEPILEPEEPYERYGDVPNVVFPCGGLVDDDGRLLI 287 (312)
T ss_dssp EEEEEEE-SSSTTSEEEEBSS-SB-S-SHHHHSSSSTTBEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCCCcceEECCCCceEcCCCccccccccCCEEEECCCEEccCCEEEE
Confidence 34688999855 89999999999999888888887777774444 443414433
No 41
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=22.61 E-value=90 Score=22.32 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=28.5
Q ss_pred HHHHhhhhhcccccCeeEEEccCCceeeecCCCccChhhhchhhhhc
Q psy4694 4 QDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGFEGLRCSSRYRPQKC 50 (74)
Q Consensus 4 q~Yvd~~Li~~~~v~~aAIig~dG~vWA~s~gf~is~~E~~~i~~~f 50 (74)
..+|+. ++..|+++.-.+.|.. .+++.+|.+|.+.++...
T Consensus 24 ~~~i~~-~i~~G~v~gi~~~Gst------GE~~~Lt~eEr~~~~~~~ 63 (290)
T TIGR00683 24 RQIIRH-NIDKMKVDGLYVGGST------GENFMLSTEEKKEIFRIA 63 (290)
T ss_pred HHHHHH-HHhCCCcCEEEECCcc------cccccCCHHHHHHHHHHH
Confidence 456765 7777767766666653 345679999999888765
No 42
>PRK02755 truB tRNA pseudouridine synthase B; Provisional
Probab=22.10 E-value=76 Score=23.43 Aligned_cols=40 Identities=5% Similarity=-0.128 Sum_probs=27.9
Q ss_pred CCceeeecCCCccChhhhchhhhhcc-----ccccccceEECCEE
Q psy4694 26 DGNVWAKSDGFEGLRCSSRYRPQKCE-----HYLYSATIGTLNVK 65 (74)
Q Consensus 26 dG~vWA~s~gf~is~~E~~~i~~~f~-----~~~~~~Gi~~~g~K 65 (74)
+|.+=..++-..++++++...+..|. .|-...-+.++|++
T Consensus 82 ~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~G~r 126 (295)
T PRK02755 82 QGEILSSQPWPHLSLAEIETALPQFRGKIEQRPPQYSAIQVDGER 126 (295)
T ss_pred CCCEEEecCCCCCCHHHHHHHHHhccCeEEEeCChhheEeeCCHh
Confidence 46777766655689999999998882 33344667777765
No 43
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=22.07 E-value=1.1e+02 Score=19.54 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=14.1
Q ss_pred cccceEECCEEEEEEeee
Q psy4694 55 YSATIGTLNVKYITSIVC 72 (74)
Q Consensus 55 ~~~Gi~~~g~KY~v~~~~ 72 (74)
...-|.+++++|.++.|=
T Consensus 54 ~Gd~l~i~~~~y~ItaVG 71 (117)
T PF03829_consen 54 PGDTLIIGGQEYTITAVG 71 (117)
T ss_dssp TT-EEEETTEEEEEEEE-
T ss_pred CCCEEEECCeEEEEEEEh
Confidence 456799999999999884
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.87 E-value=97 Score=23.60 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=21.5
Q ss_pred hcccccCeeEEEccCCceeeecCCC
Q psy4694 12 LASRCVTKAAIAGHDGNVWAKSDGF 36 (74)
Q Consensus 12 i~~~~v~~aAIig~dG~vWA~s~gf 36 (74)
+++|.--++.++|.||+.|-.-.|.
T Consensus 100 Lg~Ga~Phgiv~gpdg~~Witd~~~ 124 (353)
T COG4257 100 LGSGASPHGIVVGPDGSAWITDTGL 124 (353)
T ss_pred cCCCCCCceEEECCCCCeeEecCcc
Confidence 5678788999999999999988874
No 45
>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity. However it does not have transposase activity [, ]. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=21.83 E-value=42 Score=23.83 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=34.2
Q ss_pred EEEccCCceeeecCCCccChhhhchhhhh--c----cccccccceEECCEEEEEE
Q psy4694 21 AIAGHDGNVWAKSDGFEGLRCSSRYRPQK--C----EHYLYSATIGTLNVKYITS 69 (74)
Q Consensus 21 AIig~dG~vWA~s~gf~is~~E~~~i~~~--f----~~~~~~~Gi~~~g~KY~v~ 69 (74)
|+.++|..+|.+..|+.-|.+++..|-.. | +.....--+++||+.|-+.
T Consensus 63 aVAs~dlwIWhaffG~~GS~NDiNVL~~Splf~~~~~G~ap~v~f~VNg~~Y~~g 117 (205)
T PF04827_consen 63 AVASHDLWIWHAFFGMPGSNNDINVLDRSPLFDDLLQGQAPRVQFTVNGHEYNMG 117 (205)
T ss_pred hhhccchhhhheeeccCCcccccccccccHHHHHHhcCcCCceEEEecCeecccc
Confidence 44556889999999999888888766543 2 2223344488899888653
No 46
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.32 E-value=68 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=33.2
Q ss_pred hhhhcccccCeeEEEccCCceeeecCCCccChhhhchhhhhc
Q psy4694 9 KQLLASRCVTKAAIAGHDGNVWAKSDGFEGLRCSSRYRPQKC 50 (74)
Q Consensus 9 ~~Li~~~~v~~aAIig~dG~vWA~s~gf~is~~E~~~i~~~f 50 (74)
.+|..++.++++=|+.. .++|+..|++.++|.|...|.+.-
T Consensus 290 Rsl~~~kdikkGe~ls~-~Nl~~~RP~~gl~~~~~e~llGkk 330 (347)
T COG2089 290 RSLVATKDIKKGEILSE-DNLKVLRPGNGLHPKEYEELLGKK 330 (347)
T ss_pred hheeeecccccCccccc-cceEEeCCCCCCCHhHHHHHHhHH
Confidence 34666777777777665 479999999999999999999775
No 47
>PRK02193 truB tRNA pseudouridine synthase B; Provisional
Probab=21.12 E-value=72 Score=23.40 Aligned_cols=40 Identities=5% Similarity=-0.102 Sum_probs=27.6
Q ss_pred CCceeeecCCCccChhhhchhhhhcc-----ccccccceEECCEE
Q psy4694 26 DGNVWAKSDGFEGLRCSSRYRPQKCE-----HYLYSATIGTLNVK 65 (74)
Q Consensus 26 dG~vWA~s~gf~is~~E~~~i~~~f~-----~~~~~~Gi~~~g~K 65 (74)
+|.+=..++-..++++++...+..|. .+-....+.++|++
T Consensus 80 ~G~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~Gkr 124 (279)
T PRK02193 80 EGQIINVSQNIKVTKENLEEALNNLVGSQKQVPPVFSAKKVNGKR 124 (279)
T ss_pred CCCEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEeeCCHh
Confidence 57777755555789999999999882 23344666766654
No 48
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=20.63 E-value=2.1e+02 Score=21.38 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=19.1
Q ss_pred hhhhchhhhhccccccccceEECCEEEE
Q psy4694 40 RCSSRYRPQKCEHYLYSATIGTLNVKYI 67 (74)
Q Consensus 40 ~~E~~~i~~~f~~~~~~~Gi~~~g~KY~ 67 (74)
.++++.|-+.-.-|+...|+.++|++|+
T Consensus 140 ~~~m~viRASSaiPf~~~~V~i~G~~Yl 167 (292)
T COG4667 140 FNWLDVIRASSAIPFYSEGVEINGKNYL 167 (292)
T ss_pred HHHHHHHHHhccCCCCCCCeEECCEecc
Confidence 3344444443334578999999999997
No 49
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=20.62 E-value=1.9e+02 Score=16.67 Aligned_cols=36 Identities=3% Similarity=-0.265 Sum_probs=22.7
Q ss_pred CCccChhhhchhhhhccccccccceEECCEEEEEEee
Q psy4694 35 GFEGLRCSSRYRPQKCEHYLYSATIGTLNVKYITSIV 71 (74)
Q Consensus 35 gf~is~~E~~~i~~~f~~~~~~~Gi~~~g~KY~v~~~ 71 (74)
+|+-+.+|+.+++++|. +....=..++|++..+-.+
T Consensus 10 dw~~~A~~I~~~vRal~-p~pga~~~~~~~~i~i~~~ 45 (100)
T PF02911_consen 10 DWNQSAEEIYNLVRALN-PYPGAFTTFNGKRIKILKA 45 (100)
T ss_dssp -TTSBHHHHHHHHHHTT-TTT-EEEEETTEEEEEEEE
T ss_pred CCCCCHHHHHHHHhCCC-CCCCEEEeeCCeEEEEEee
Confidence 36678889999999984 3323334567777665443
No 50
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.60 E-value=87 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=19.7
Q ss_pred EEEccCC-ceeeecC--C---CccChhhhchhhhh
Q psy4694 21 AIAGHDG-NVWAKSD--G---FEGLRCSSRYRPQK 49 (74)
Q Consensus 21 AIig~dG-~vWA~s~--g---f~is~~E~~~i~~~ 49 (74)
.|.|+|+ .++|+.- | ..+||||...|-.+
T Consensus 116 sI~~Re~s~~YaK~I~~G~S~~~LS~EE~eal~~A 150 (151)
T PF14584_consen 116 SIHSREESRTYAKPIVNGQSSYPLSEEEKEALEKA 150 (151)
T ss_pred eeecCCCcEEEEEEecCCcccccCCHHHHHHHHHh
Confidence 3455566 6777543 3 67999999888654
No 51
>KOG1794|consensus
Probab=20.33 E-value=92 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.6
Q ss_pred cccccCeeEEEccCC-ceeeecCC
Q psy4694 13 ASRCVTKAAIAGHDG-NVWAKSDG 35 (74)
Q Consensus 13 ~~~~v~~aAIig~dG-~vWA~s~g 35 (74)
|...+++..||+.|| .+|.++.+
T Consensus 10 GgaT~s~~Vivd~~~~~~~~a~~~ 33 (336)
T KOG1794|consen 10 GGATCSRLVIVDEDGTILGRAVGG 33 (336)
T ss_pred CCcceeEEEEECCCCCEeeEeecc
Confidence 456788999999999 77877775
Done!