RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4694
         (74 letters)



>gnl|CDD|215811 pfam00235, Profilin, Profilin. 
          Length = 121

 Score = 69.5 bits (171), Expect = 3e-17
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGFEGL 39
          SWQ YVD  L+A+  + KAAI GHDG+VWA S GF  L
Sbjct: 1  SWQAYVDSNLVATGKLDKAAIIGHDGSVWAASPGFPAL 38


>gnl|CDD|214646 smart00392, PROF, Profilin.  Binds actin monomers, membrane
          polyphosphoinositides and poly-L-proline.
          Length = 129

 Score = 60.8 bits (148), Expect = 8e-14
 Identities = 22/36 (61%), Positives = 24/36 (66%)

Query: 1  MSWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGF 36
          MSWQ YVD  L+ S CV  AAI G DG+VWA S G 
Sbjct: 1  MSWQAYVDNLLVGSGCVDAAAIGGKDGSVWAASAGG 36


>gnl|CDD|238085 cd00148, PROF, Profilin binds actin monomers, membrane
          polyphosphoinositides such as PI(4,5)P2, and
          poly-L-proline. Profilin can inhibit actin
          polymerization into F-actin by binding to monomeric
          actin (G-actin) and terminal F-actin subunits, but - as
          a regulator of the cytoskeleton - it may also promote
          actin polymerization. It plays a role in the assembly
          of branched actin filament networks, by activating WASP
          via binding to WASP's proline rich domain. Profilin may
          link the cytoskeleton with major signalling pathways by
          interacting with components of the phosphatidylinositol
          cycle and Ras pathway.
          Length = 127

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHD-GNVWAKSDGF 36
          SWQ YVD  LL +  V  AAI GHD G+VWA S G 
Sbjct: 1  SWQAYVDDNLLGTGKVDSAAIVGHDDGSVWAASAGG 36


>gnl|CDD|140337 PTZ00316, PTZ00316, profilin; Provisional.
          Length = 150

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 1  MSWQDYVDKQLLASRCVTKAAIAG-HDGNVWA 31
          MSWQ YVD  L+ S  +  AAI G  DG+ WA
Sbjct: 1  MSWQAYVDDSLIGSGNMHSAAIVGLADGSYWA 32


>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
            Provisional.
          Length = 2849

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 32   KSDGFEGLRCS--SRYRPQKCEHYLYSATIGTLNVKYITSIVCN 73
            K+D F G+ C   S + P+KC H +Y    G   VK    ++ +
Sbjct: 1642 KNDIF-GIICDNESNFDPEKCFHEIYDKAGGK--VKKFKELIPD 1682


>gnl|CDD|233753 TIGR02162, torC, trimethylamine-N-oxide reductase c-type cytochrome
           TorC.  This family includes consists of TorC, a
           pentahemic c-type cytochrome subunit of periplasmic
           reductases for trimethylamine-N-oxide (TMAO). The
           N-terminal half is closely related to tetrahemic NapC
           (or NirT) subunits of periplasmic nitrate (or nitrite)
           reductases; some species have both TMAO and nitrate
           reductase complexes.
          Length = 386

 Score = 25.2 bits (55), Expect = 3.2
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 10  QLLASRCVTKAAIAGHDGNVWAKSDGFEGLRCSSRYRPQKCEHYLYSATIGTLN 63
           Q+ A+  + K  +      VWA +       CS  +   +  H+  +  IGTLN
Sbjct: 301 QVSATAWMKKRDLTNDIKPVWAYAKSMYNGACSMCHVQPEPAHFDANTWIGTLN 354


>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
           subunit [Signal transduction mechanisms].
          Length = 460

 Score = 25.4 bits (55), Expect = 3.3
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 42  SSRYRPQKCEHYLYSATIGTLNV 64
           S+ + P+ C  ++YS++ G + +
Sbjct: 226 SAEFHPEMCNVFMYSSSKGEIKL 248


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,524,341
Number of extensions: 235182
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 8
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)