RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4694
         (74 letters)



>1acf_A Profilin I; protein binding, actin-binding protein, contractIle
          protein; 2.00A {Acanthamoeba castellanii} SCOP:
          d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
          Length = 125

 Score = 62.0 bits (150), Expect = 2e-14
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGFE 37
          SWQ YVD  L+ +  VT+AAI G DGN WA S GF 
Sbjct: 1  SWQTYVDTNLVGTGAVTQAAILGLDGNTWATSAGFA 36


>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A
          {Schizosaccharomyces pombe} PDB: 3dav_A
          Length = 127

 Score = 59.3 bits (143), Expect = 2e-13
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 1  MSWQDYVDKQLLASRCVTKAAIAGHDGN-VWAKSDGFE 37
          MSWQ YVD  LL +  + +AAI    G+ VWA S GF 
Sbjct: 1  MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFN 38


>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A
          {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A
          1cqa_A 1g5u_A
          Length = 130

 Score = 57.0 bits (137), Expect = 2e-12
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 2  SWQDYVDKQLLA---SRCVTKAAIAGHDGNVWAKSDGFEGL 39
          SWQ YVD  L+       +T AAI G DG+VWA+S  F  L
Sbjct: 1  SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQL 41


>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A
          {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
          Length = 125

 Score = 52.3 bits (125), Expect = 9e-11
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGN-VWAKSDGFEG 38
          SWQ Y D  L+ +  V KA I    G+ VWA S G   
Sbjct: 1  SWQAYTD-NLIGTGKVDKAVIYSRAGDAVWATSGGLSL 37


>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding,
          cytoplasm, acetylation, cytoskeleton, actin-binding;
          1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
          Length = 140

 Score = 48.6 bits (115), Expect = 4e-09
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGN--VWAKSDGF 36
           WQ YVD  L+   C  +AAI G+     VWA + G 
Sbjct: 3  GWQSYVD-NLMCDGCCQEAAIVGYCDAKYVWAATAGG 38


>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin,
          poly-proline, loading poly-Pro site, GAB domain,
          structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
          SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A*
          2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P*
          3u4l_P* 3ub5_P*
          Length = 139

 Score = 43.2 bits (101), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGN--VWAKSDGF 36
           W  Y+D  L+A      AAI G+  +  VWA   G 
Sbjct: 2  GWNAYIDN-LMADGTCQDAAIVGYKDSPSVWAAVPGK 37


>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria,
          cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
          Length = 179

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGH-DGNVWAKSDGFE 37
          SW  Y++ +LLA+  V+ A +A   DG V+A     E
Sbjct: 6  SWDSYLNDRLLATNQVSGAGLASEEDGVVYACVAQGE 42


>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding
          protein; HET: MSE; 1.70A {Toxoplasma gondii}
          Length = 166

 Score = 34.5 bits (78), Expect = 8e-04
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 2  SWQDYVDKQLLASRCVTKAAIA-GHDGNVWAKSD 34
           W   V + L+ +       IA   DG V+A + 
Sbjct: 6  DWDPVVKEWLVDTGYCCAGGIANAEDGVVFAAAA 39


>3ott_A Two-component system sensor histidine kinase; beta-propeller,
           beta-sandwich, transcription; HET: TBR; 2.30A
           {Bacteroides thetaiotaomicron}
          Length = 758

 Score = 26.2 bits (58), Expect = 1.0
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 22  IAGHDGNVWAKSDGFEGLRCSSRYRPQKCEHYLYSATIGTLNVKYITSIV 71
           +A     +W  +    GL     Y+ Q  +   +      L    I SI+
Sbjct: 108 MALQGDTLWLGALN--GL---YTYQLQSRKLTSFDTRRNGLPNNTIYSII 152


>1xqb_A IR47, hypothetical UPF0066 protein HI0510; structural genomics,
           protein structure initiative, PSI, NESG; 2.85A
           {Haemophilus influenzae} SCOP: e.56.1.1
          Length = 247

 Score = 24.7 bits (53), Expect = 3.6
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 43  SRYRPQKCEHYLYSATIGTLNVKY 66
             Y+  K    +Y  ++   NVK+
Sbjct: 197 PAYQQGKPSDRIYGMSLYEFNVKW 220


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,139,789
Number of extensions: 48746
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 11
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)