RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4694
         (74 letters)



>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
          {Acanthamoeba castellanii [TaxId: 5755]}
          Length = 125

 Score = 62.9 bits (153), Expect = 3e-15
 Identities = 21/35 (60%), Positives = 24/35 (68%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGNVWAKSDGF 36
          SWQ YVD  L+ +  VT+AAI G DGN WA S GF
Sbjct: 1  SWQTYVDTNLVGTGAVTQAAILGLDGNTWATSAGF 35


>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein)
          {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 130

 Score = 56.0 bits (135), Expect = 1e-12
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 2  SWQDYVDKQLLA---SRCVTKAAIAGHDGNVWAKSDGFEGL 39
          SWQ YVD  L+       +T AAI G DG+VWA+S  F  L
Sbjct: 1  SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQL 41


>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 125

 Score = 50.6 bits (121), Expect = 2e-10
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGN-VWAKSDGFEG 38
          SWQ Y D  L+ +  V KA I    G+ VWA S G   
Sbjct: 1  SWQAYTD-NLIGTGKVDKAVIYSRAGDAVWATSGGLSL 37


>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
          (Homo sapiens), isoform II [TaxId: 9606]}
          Length = 138

 Score = 50.3 bits (120), Expect = 3e-10
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGN--VWAKSDGFE 37
           WQ YVD  L+   C  +AAI G+     VWA + G  
Sbjct: 2  GWQSYVD-NLMCDGCCQEAAIVGYCDAKYVWAATAGGV 38


>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein)
          {Human (Homo sapiens), isoform I [TaxId: 9606]}
          Length = 139

 Score = 48.4 bits (115), Expect = 1e-09
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 2  SWQDYVDKQLLASRCVTKAAIAGHDGN--VWAKSDGFE 37
           W  Y+D  L+A      AAI G+  +  VWA   G  
Sbjct: 2  GWNAYID-NLMADGTCQDAAIVGYKDSPSVWAAVPGKT 38


>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
           putative coronavirus nsp2) {Human coronavirus 229E
           [TaxId: 11137]}
          Length = 300

 Score = 22.8 bits (49), Expect = 4.8
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 17  VTKAAIAGHDGNVWAKSDGFEGLRCS 42
           +    +     N WA+++GF  +   
Sbjct: 219 LKGEKLFVEHYNEWAQANGFTAMNGE 244


>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
           putative coronavirus nsp2) {Transmissible
           gastroenteritis virus [TaxId: 11149]}
          Length = 299

 Score = 22.5 bits (48), Expect = 6.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 17  VTKAAIAGHDGNVWAKSDGFEGLRCS 42
           VT  +++    N WAK++ F  L  +
Sbjct: 219 VTNTSMSLESYNTWAKTNSFTELSST 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,518
Number of extensions: 9917
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)