BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4697
(383 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
Length = 1975
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 20/194 (10%)
Query: 55 LENLPVNYVLLTVTTNKPRDLRVKYWLS-NDYGERFSISR-QGDISLMQCLDYETEDSYR 112
+E PV VL T+ N ++ +S NDY F+I++ G I + LDYE +
Sbjct: 1014 VEEQPVGTVLTTLQANDEDSSIGEFNISDNDY---FAINQTSGMIYTIARLDYEVVKEVK 1070
Query: 113 FTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKV 168
F V +DT +T +A V + ++N+ND DP+F Y + + + +P G+V GKV
Sbjct: 1071 FQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDY-----YFNVTENSPRGTVAGKV 1125
Query: 169 EAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDLSALNTSTIQ---LVVVATDTG 222
EA DGD G +T +L G K FSI+ +G++ + + S L+ I+ L VVA D
Sbjct: 1126 EAHDGDVGVFGEITYTLIGENNKYFSIDAYTGNVMVANSSILDREQIKELTLSVVAQDKA 1185
Query: 223 NPPRQASVPAIMHF 236
Q S A +H
Sbjct: 1186 PAAVQKSATATIHI 1199
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 102 CLDYETEDSYRFTVYATDTLMTTSATV---NISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
CLDYE+E +Y + ATD SA+V ISV + ND P P Y A
Sbjct: 626 CLDYESETTYFLSYKATDDNGRGSASVVSLRISVTDANDSPPVCESPLYR--------AS 677
Query: 159 LTPGSVIGK----VEAADGDKGDRVTLSLRGP--YEKMFSIN-DSGHISI-----VDLSA 206
+ G+V+ V+A D D R++ +RG E +F I+ ++G I I +D++
Sbjct: 678 VDEGAVVFDSPLIVKARDADTMSRISYRIRGSEQVESIFDIDRETGQIIIRPNATLDVTN 737
Query: 207 LNTSTIQLVVVATD 220
LN+ + V A D
Sbjct: 738 LNSDQLIFAVEAND 751
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 42/227 (18%)
Query: 11 ITLVVRAIQYDN----QDRYALATLIVSKAGTSLRELQ-----FSKNEYSVSALEN-LPV 60
I+LV+RA + N D AT +KA ++R++ F+ EYSVS LEN LP
Sbjct: 318 ISLVIRARELVNGVPSDDPLTSAT---AKATVTIRDVNDSPPVFNHKEYSVSLLENTLPG 374
Query: 61 NYVLLTVT-TNKPRDLRVKYWLS-NDYGERFSIS-------RQGDISLMQ-CLDYETEDS 110
+ L ++ ++ + K+ L +D F + Q +I + LDYE +
Sbjct: 375 TPLALDMSVSDADVGINSKFALRLDDVSGVFDVEPKLVTGYSQVNIRVANGTLDYENPNQ 434
Query: 111 YRFTVYA----TDT--LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
+F V TDT ++++AT+ +SV++ ND P F Y + L PG
Sbjct: 435 RKFIVLVVAEETDTNPRLSSTATITVSVLDANDNKPVFEQESYSASVSEAAL----PGQY 490
Query: 165 IGKVEAAD------GDKGDRVTLSLRGPYEKMFSIND-SGHISIVDL 204
I + A D GD G R +LS G ++F +N+ +G IS+ +
Sbjct: 491 IATITARDVDSGSYGDSGIRYSLSGTGA--ELFHVNEQTGVISLANC 535
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 109 DSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
D F V A D L T VNI+V +VN+ P F Y + + G+ + +V
Sbjct: 741 DQLIFAVEANDGLFTAHCGVNITVRDVNNHVPNFEQQSYSAVVEE----NSEIGTSVERV 796
Query: 169 EAADGDKGDRVTLSLR---GPYEKMFSINDSGHISI---VDLSALNTSTIQLVVVATDTG 222
A D D G L R G ++ + +G + + +D N T QL + A+D G
Sbjct: 797 HATDLDTGKNAELRYRIQQGSFDDFGIVETTGEVFVSRKLDFDRRN--TYQLQIQASDQG 854
Query: 223 NP 224
P
Sbjct: 855 TP 856
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSI-SRQGDISLM 100
F + YS EN + + V + ++ ++Y + + F I G++ +
Sbjct: 774 FEQQSYSAVVEENSEIGTSVERVHATDLDTGKNAELRYRIQQGSFDDFGIVETTGEVFVS 833
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL- 156
+ LD++ ++Y+ + A+D +T +AT+ I+V N ND DP F P + H +
Sbjct: 834 RKLDFDRRNTYQLQIQASDQGTPSLTGTATLTINVQNSNDKDPYF-VPATQ----HAEVR 888
Query: 157 ADLTPGSVIGKVEAADGDKGDRVTLSLRG 185
AD PG ++ + A D D + L G
Sbjct: 889 ADAPPGQLVYTLIALDPDVANHNALEFAG 917
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 89/242 (36%), Gaps = 44/242 (18%)
Query: 28 LATLIVSKAGTSLRELQFSKNEYSVSALEN----LPVNYVLLTVTTNKPRDLRVKYWLSN 83
L ++ + A + E + N Y VS EN + + ++ + RD+ L N
Sbjct: 1416 LLSVSIVDANENRPEFPDASNPYKVSINENSGRDVKIGHIQAASRSKHNRDIFYYMLLGN 1475
Query: 84 DYGERFSISRQGDISLMQCLDYETEDSYRFTVYAT-----------------DTLM--TT 124
+ G + GDI + LD E D Y + A+ TL T
Sbjct: 1476 EDGAFYVDKLTGDIYTNKSLDREETDVYTLYILASIKADLHISEEERASFSIKTLNRDNT 1535
Query: 125 SATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR 184
A V I+V++VND P F P Y + A+ G+ I V A D D+G +
Sbjct: 1536 VAKVAITVLDVNDNPPVFEKPIYYAGVN----ANAKMGAAITLVNATDADQGKNAKIEFM 1591
Query: 185 GPYEKM----------------FSINDSGHISIVDLSA-LNTSTIQLVVVATDTGNPPRQ 227
+ F+I+ G IS + A N +L +VA + P
Sbjct: 1592 IVASNLYKFGATKSTGSIVPSPFAISQDGRISANTIMAEYNQDRFELEIVARELEQPQSS 1651
Query: 228 AS 229
AS
Sbjct: 1652 AS 1653
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 83 NDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT----LMTTSATVNISVVNVNDW 138
+ + E F ISR G +S+ + LD R V TD+ + + I +++VN
Sbjct: 935 DQFKEYFKISRNGKVSVNKQLDRNLFAVMRINVLVTDSTAPNVQQGRGLLIIQIIDVNKN 994
Query: 139 DPRFRYPQYELFLPHIPLADLTP---GSVIGKVEAADGDKGDRVTLSLRGPY----EKMF 191
PRF P + + P I L + G+V+ ++A D D S G + F
Sbjct: 995 PPRFNAP-WSVEQPQIKLQMVEEQPVGTVLTTLQANDED-------SSIGEFNISDNDYF 1046
Query: 192 SIND-SGHI-SIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIM 234
+IN SG I +I L ++ V +DTG P A+ ++
Sbjct: 1047 AINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATADVVV 1091
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 110 SYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVI 165
+Y T+ A DT M ++ I+V+ VN P F P IP + P ++
Sbjct: 1282 AYELTISARDTQGSGTMESTTKAIITVLRVNRHKPEFVIPALSNATIEIPGDIVQPDYLL 1341
Query: 166 GKVEAADGD--KGDRVT--LSLRGPYEKM---FSIND-SGHI-SIVDLSALNTSTIQLVV 216
V A D D + +V+ L + E+ F I++ +G + + L+ N + +++
Sbjct: 1342 LTVRAMDNDTEENGKVSYHLQVNNRNEQQTGEFKIDEVTGELRAKTQLNRKNRANYDIIL 1401
Query: 217 VATDTGNPP 225
VA D GNPP
Sbjct: 1402 VARDAGNPP 1410
>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2
Length = 4981
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 44/270 (16%)
Query: 2 INEDD-----FLQPITLV---VRAIQYDNQDRYALATLIVSKAGTSLRELQ--------- 44
+NEDD FL PIT V R + Y+ Q Y L T+ G ++
Sbjct: 1880 VNEDDEDGIFFLNPITGVFNLTRLLDYEVQQYYIL-TVRAEDGGGQFTTIRVYFNILDVN 1938
Query: 45 -----FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISRQG 95
FS N YS S +ENLPV +L D ++ Y + S D +F++ + G
Sbjct: 1939 DNPPIFSLNSYSTSLMENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNG 1998
Query: 96 DISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRFRYPQYEL 149
+ +++ LD E++ Y V D + T++A V+I +++VND P F P+
Sbjct: 1999 VLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPK--- 2055
Query: 150 FLPHIPLADLTP-GSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIV-DL 204
L +IP + TP +V+ K +A D D G + +L P FSI G + + +L
Sbjct: 2056 -LTYIP--ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGEL 2112
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIM 234
S L VVATD G P +S ++
Sbjct: 2113 DREEVSNYTLTVVATDKGQPSLSSSTEVVV 2142
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 56 ENLPVNYVLLTVTTNKPR---DLRVKYWLSNDYGERFSISR-QGDISLMQCLDYETEDSY 111
EN P++ V+ P + ++Y L N G +FSI G++ L LD E +Y
Sbjct: 2061 ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGELDREEVSNY 2120
Query: 112 RFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
TV ATD +++S V + V+++ND +P F Y++ + L G+ I +V
Sbjct: 2121 TLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINENTLT----GTDIIQV 2176
Query: 169 EAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATDTGN 223
AADGD+G + + G + F I+ +G I++ L T T L V ATD G+
Sbjct: 2177 FAADGDEGTNGQVRYGIVNGNTNQEFRIDSVTGAITVAKPLDREKTPTYHLTVQATDRGS 2236
Query: 224 PPR 226
PR
Sbjct: 2237 TPR 2239
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 87 ERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRF 142
+F+I S G ++L+ LDYE +Y + A D+ + ++ T+NI +++ ND P F
Sbjct: 1256 RQFAIDSTSGQVTLIGKLDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSF 1315
Query: 143 RYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTL--SLRGPY-EKMFSIN-DSGH 198
P+ LF+ L ++ G ++ V A D D GD L S+ G FSI+ ++G
Sbjct: 1316 --PKSTLFVD--VLENMRIGELVSSVTATDSDSGDNADLYYSITGTNNHGTFSISPNTGS 1371
Query: 199 ISIVDLSALNTSTI-QLVVVATDTGNPPRQASVPAIMH 235
I + T ++ +L + A D G PPR +++ ++H
Sbjct: 1372 IFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIH 1409
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 45 FSKNEYSVSALENLPV--NYVLLTVTTNKPR--DLRVKYWL-SNDYGERFSISRQGDISL 99
F + YSV+ ENL +L V + R + ++ Y L + F++S G++ +
Sbjct: 2259 FELSPYSVNVPENLGTLPRTILQVVARDDDRGSNSKLSYVLFGGNEDNAFTLSASGELGV 2318
Query: 100 MQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
Q LD ET++ + + ATD+ +T + T+N+ V +VND P F Y +P
Sbjct: 2319 TQSLDRETKERFVLMITATDSGSPALTGTGTINVIVDDVNDNVPTFASKAYFTTIPE--- 2375
Query: 157 ADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDS-GHI---SIVDLSALNTSTI 212
D G+ + V A+D D + + G F+IN S G I +++D + T
Sbjct: 2376 -DAPTGTDVLLVNASDADASKNAVIRIIGG-NSQFTINPSTGQIITSALLDRETKDNYT- 2432
Query: 213 QLVVVATDTG--------------------NPPRQASVPAIMHFP 237
LVVV +D G NPPR P + H P
Sbjct: 2433 -LVVVCSDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHHPYVTHIP 2476
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLS-NDYGERFSISRQGDISLM 100
F + Y V+ E+ PVN V + + + Y ++ + G+ F I G + +
Sbjct: 996 FDQLSYEVTLSESEPVNSRFFKVQASDKDSGANGEIAYTIAEGNTGDAFGIFPDGQLYIK 1055
Query: 101 QCLDYETEDSYRFTVYATDTLMTT-SATVNISVV--NVNDWDPRFRYPQYELFLPHIPLA 157
LD E +D Y V A+D + SATVN++V+ +VND P F Y + A
Sbjct: 1056 SELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTFYFEEEQRA 1115
Query: 158 DLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSINDSGHIS---IVDLSAL--- 207
GS +GKV A D D G R + + P ++ +I SG I+ D +L
Sbjct: 1116 ----GSFVGKVSAVDKDFGPNGEVRYSFEMVQPDFELHAI--SGEITNTHQFDRESLMRR 1169
Query: 208 -NTSTIQLVVVATDTGNP 224
T+ V+ATD G P
Sbjct: 1170 RGTAVFSFTVIATDQGIP 1187
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 56 ENLPVNYVLLTVTTNKPRDLRVKYWL-SNDYGERFSISR-QGDISLMQCLDYETEDSYRF 113
EN PV+ ++ T+T + R + Y++ S + G F I + G +S+ Q LD+E Y
Sbjct: 2578 ENQPVSSLVTTITGSSLRGEPMSYYIASGNLGNTFQIDQLTGQVSISQPLDFEKIQKYVV 2637
Query: 114 TVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEA 170
+ A D ++ ++I+V++VND P F+ + F+ I L +L+P ++ V A
Sbjct: 2638 WIEARDGGFPPFSSYEKLDITVLDVNDNAPIFK---EDPFISEI-LENLSPRKIL-TVSA 2692
Query: 171 ADGDKGDRVTLS---LRGPYEKMFSINDS-GHI-SIVDLSALNTSTIQLVVVATDTGNPP 225
D D G L + G E FSIN + G I S+ L S L + ++D G+P
Sbjct: 2693 MDKDSGPNGQLDYEIVNGNMENSFSINHATGEIRSVRPLDREKVSHYVLTIKSSDKGSPS 2752
Query: 226 RQASVPAIMH 235
+ SV +++
Sbjct: 2753 QSTSVKVMIN 2762
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 77 VKYWLSNDYGERFSIS-RQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNV 135
V Y + + + F I GD+ + LD E Y V A D L ++ +NI+V +V
Sbjct: 1775 VTYTIISGADDSFRIDPESGDLIATRRLDRERRSKYSLLVRADDGLQSSDMRINITVSDV 1834
Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG 176
ND P+F P Y +P D PGS++ + A D D G
Sbjct: 1835 NDHTPKFSRPVYSFDIPE----DTIPGSLVAAILATDDDSG 1871
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 50 YSVSALENLPVNYVLLTVTTNKPRDLRV----KYWLSNDYGERFSIS-RQGDISLMQCLD 104
+S EN P+ Y + VTT+ D+ + +Y + D F+I+ GDI + + L+
Sbjct: 2777 FSAHVPENSPLGYTVTRVTTSD-EDIGINAISRYSIM-DASLPFTINPSTGDIVISRPLN 2834
Query: 105 YETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
E D YR V A D+ T S V I V ++ND PRF Y L P L ++ GS
Sbjct: 2835 REDTDRYRIRVSAHDSGWTVSTDVTIFVTDINDNAPRFSRTSYYLDCPE--LTEI--GSK 2890
Query: 165 IGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHI---------SIVDLSALNTSTI 212
+ +V A D D+G +V ++ E F IN +G I ++ S +N +
Sbjct: 2891 VTQVFATDPDEGSNGQVFYFIKSQSE-YFRINATTGEIFNKQILKYQNVTGFSNVNINRH 2949
Query: 213 QLVVVATDTGNP 224
+V ++D G P
Sbjct: 2950 SFIVTSSDRGKP 2961
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 12/193 (6%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLR--VKYWLS-NDYGERFSISR-QGDISLM 100
FS+ YS EN+ + Y + +V+ + DL + Y ++ D F+I++ G ++
Sbjct: 793 FSQVAYSFVVFENVALGYHVGSVSAST-MDLNSNISYLITTGDQKGMFAINQVTGQLTTA 851
Query: 101 QCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
+D E + Y+ V A+ +T VNI+V ++ND P F + + + +
Sbjct: 852 NVIDREEQSFYQLKVVASGGTVTGDTMVNITVKDLNDNSPHFLQAIESVNV----VENWQ 907
Query: 161 PGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDLSALNTSTIQLVVV 217
G I + +A D D+G V SL+ + +F+IN+ +G IS++ ++ + Q+ ++
Sbjct: 908 AGHSIFQAKAVDPDEGVNGMVLYSLKQNPKNLFAINEKNGTISLLGPLDVHAGSYQIEIL 967
Query: 218 ATDTGNPPRQASV 230
A+D G P +SV
Sbjct: 968 ASDMGVPQLSSSV 980
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 22/237 (9%)
Query: 11 ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNE-YSVSALENLPVNYVLLTVTT 69
I L + A + + A L+V+ + + FS+ E Y VS +EN P LL +
Sbjct: 548 IVLNISARDQGVHPKVSYAQLVVTLLDVNDEKPVFSQPEGYDVSVVENAPTGTELLMLRA 607
Query: 70 NKPRDL----RVKYWLSNDYGERFSISR---QGDISLMQCLDYETEDSYRFTVYATD--- 119
DL V++ L +R S G +S + LD E + Y V ATD
Sbjct: 608 TD-GDLGDNGTVRFSLQEAETDRRSFRLDPVSGRLSTISSLDREEQAFYSLLVLATDLGS 666
Query: 120 TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRV 179
++ A +N+S++++ND P F QY HI + GS I V A D D G
Sbjct: 667 PPQSSMARINVSLLDINDNSPVFYPVQY---FAHIK-ENEPGGSYITTVSATDPDLGTNG 722
Query: 180 TL--SLRGPYEKMFSIN-DSGHISI-VDLSALNTSTIQLVVVATDTGN--PPRQASV 230
T+ S+ F +N SG IS + L + QL +VATD GN P QA V
Sbjct: 723 TVKYSISAGDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIV 779
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYELF 150
G I LD ET+D+Y V +D +++S +V ++V +VND PRF Q+ +
Sbjct: 2415 GQIITSALLDRETKDNYTLVVVCSDAGSPEPLSSSTSVLVTVTDVNDNPPRF---QHHPY 2471
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGDRVTL--SLRGPYEKMFSINDSGHISIVDLSALN 208
+ HIP L PGS + V D D G L SL G + F I D +I+ LN
Sbjct: 2472 VTHIPSPTL-PGSFVFAVTVTDADIGPNSELHYSLSGRNSEKFHI-DPLRGAIMAAGPLN 2529
Query: 209 -TSTIQLVVVATDTGNPPRQASVPAIMHF 236
S + V D G+ P+ S + F
Sbjct: 2530 GASEVTFSVHVKDGGSFPKTDSTTVTVRF 2558
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSIS-RQGDISLM 100
F ++Y + LEN P ++ + + + + Y + + + F I G I+
Sbjct: 3194 FLSDDYFPTVLENAPSGTTVIHLNATDADSGTNAVIAYTVQSSDSDLFVIDPNTGVITTQ 3253
Query: 101 QCLDYETEDSYRFTVYA---TDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
LD+ET+ SY TV A D + ATVNI + N++ PRF Y + ++
Sbjct: 3254 GFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKLY-----YFEIS 3308
Query: 158 DLTP-GSVIGKVEAAD---GDKGDRVTLSLRGPYEKMFSIN 194
+ P G+++G+V A+D G G+ L +K F IN
Sbjct: 3309 EAAPKGTIVGEVFASDRDLGTDGEVHYLIFGNSRKKGFQIN 3349
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 89 FSISRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYP 145
FS+S G +S + +D E + +V D+ M+++ TV+I+V++ ND + R
Sbjct: 3558 FSLSTAGVLSTTREIDREQIADFYLSVVTKDSGVPQMSSTGTVHITVIDQNDNPSQSR-- 3615
Query: 146 QYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSI 193
E+F+ + +L PG ++G V+ D D D SL +FSI
Sbjct: 3616 TVEIFVNY--YGNLFPGGILGSVKPQDPDVLDSFHCSLTSGVTSLFSI 3661
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 20/142 (14%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVT-----TNKPRDLRVKYWLSNDYGERFSIS-RQGDIS 98
F K+ V LEN+ + ++ +VT + DL +N++G FSIS G I
Sbjct: 1315 FPKSTLFVDVLENMRIGELVSSVTATDSDSGDNADLYYSITGTNNHGT-FSISPNTGSIF 1373
Query: 99 LMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQYELF---LP 152
L + LD+ET+ Y+ + A D +++ +V I V + ND P F P ++F +
Sbjct: 1374 LAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSF--PPGDIFKSIVE 1431
Query: 153 HIPLADLTPGSVIGKVEAADGD 174
+IP+ G+ + V A D D
Sbjct: 1432 NIPI-----GTSVISVTAHDPD 1448
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPR--DLRVKYWLSNDYGER-FSISRQ-GDISLM 100
F ++ + LENL +L +K + ++ Y + N E FSI+ G+I +
Sbjct: 2669 FKEDPFISEILENLSPRKILTVSAMDKDSGPNGQLDYEIVNGNMENSFSINHATGEIRSV 2728
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ LD E Y T+ ++D +TS V I++++ ND PRF ++F H+P
Sbjct: 2729 RPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFS----QIFSAHVP-- 2782
Query: 158 DLTP-GSVIGKVEAADGDKG 176
+ +P G + +V +D D G
Sbjct: 2783 ENSPLGYTVTRVTTSDEDIG 2802
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 51 SVSALENLPVNYVLLTVTTNKPRDL---RVKYWLSNDYGERFSIS-RQGDISLMQCLDYE 106
SV+ +EN + + P + V Y L + F+I+ + G ISL+ LD
Sbjct: 899 SVNVVENWQAGHSIFQAKAVDPDEGVNGMVLYSLKQNPKNLFAINEKNGTISLLGPLDVH 958
Query: 107 TEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-G 162
SY+ + A+D +++S + + V +VND P F YE + L++ P
Sbjct: 959 A-GSYQIEILASDMGVPQLSSSVILTVYVHDVNDNSPVFDQLSYE-----VTLSESEPVN 1012
Query: 163 SVIGKVEAADGDKGDRVTLSL---RGPYEKMFSINDSGHISI-VDLSALNTSTIQLVVVA 218
S KV+A+D D G ++ G F I G + I +L L+VVA
Sbjct: 1013 SRFFKVQASDKDSGANGEIAYTIAEGNTGDAFGIFPDGQLYIKSELDRELQDRYVLMVVA 1072
Query: 219 TDTGNPPRQASV 230
+D P A+V
Sbjct: 1073 SDRAVEPLSATV 1084
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 128 VNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPY 187
VN++V ++ND P F Y+ +P D GS + +V AAD D+G + R
Sbjct: 236 VNVTVQDINDNPPVFGSSHYQAGVPE----DAVVGSSVLQVAAADADEGTNADIRYRLQD 291
Query: 188 EKM-FSIN-DSGHISI---VDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQ 242
E F ++ ++G I++ +D A + L V A D G VP++ EA++Q
Sbjct: 292 EGTPFQMDPETGLITVREPLDFEARRQYS--LTVQAMDRG-------VPSLTGRAEALIQ 342
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 34/172 (19%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
G +L + LDYE + Y TV A D T+ V ++++VND P F Y L
Sbjct: 1896 GVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYSTSL-- 1953
Query: 154 IPLADLTPGSVIGKVEAADGDKG--DRVTLSL-RGPYEKMFSINDSGHISIVDLSALN-- 208
+ +L GS + D D G ++T S+ G F+++ +G + + L AL+
Sbjct: 1954 --MENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNGVLKV--LKALDRE 2009
Query: 209 ----------------------TSTIQLVVVATDTGNPPRQASVPAIMHFPE 238
TST Q+ ++ D + P P + + PE
Sbjct: 2010 SQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLTYIPE 2061
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 97 ISLMQCLDYETEDSYRFTVYATDTL----------MTTSATVNISVVNVNDWDPRFRYPQ 146
I + LD E SY TV +D ++ A++ I V ++ND P F
Sbjct: 420 IKVASALDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQV 479
Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIV 202
Y + L + PGS + + A DGD G L + G F I++ SG ++
Sbjct: 480 YRVNLSE----EAPPGSYVSGISATDGDSGLNANLRYSIVSGNGLGWFHISEHSGLVTTG 535
Query: 203 DLSALN---TSTIQLVVVATDTGNPPR 226
L+ S I L + A D G P+
Sbjct: 536 SSGGLDRELASQIVLNISARDQGVHPK 562
>sp|Q5DRA3|PCDGL_PANTR Protocadherin gamma-C4 OS=Pan troglodytes GN=PCDHGC4 PE=3 SV=1
Length = 938
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
LV+ A+ N R A L VS + F ++ Y +S LE+ P VL+ + + P
Sbjct: 210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269
Query: 73 RDL----RVKYWLSNDYGER----FSI-SRQGDISLMQCLDYETEDSYRFTVYATD---T 120
DL V ++ S +R FS+ G ++L+ LD+E+E+ Y F V A D
Sbjct: 270 -DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328
Query: 121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
M ++ + +++VND P LP PG+V+ + D D G
Sbjct: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPE----SAEPGTVVALISVQDPDSGSNGD 384
Query: 181 LSLRGPYEKMFSINDS--GHISIVDLSALN---TSTIQLVVVATDTGNPP 225
+SLR P F++ + S+V L+ S+ ++V A+D GNPP
Sbjct: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 77 VKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
+ + L + + +FS+ G LD E + SY V A+D ++T T+ +++
Sbjct: 393 LPFALKSAFRNQFSLVTAGP------LDREAKSSYDIMVTASDAGNPPLSTHRTIFLNIS 446
Query: 134 NVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMF 191
+VND P F +E+F+P + PG ++ + A+D D G ++ SL P +
Sbjct: 447 DVNDNPPSFFQRSHEVFVPE----NNRPGDLLCSLAASDPDSGLNALISYSLLEPRNR-- 500
Query: 192 SINDSGHISIVDLSAL----------NTSTIQLVVVATDTGNPPRQASV 230
++ S IS+ + T T+Q V A D GNPP ++V
Sbjct: 501 DVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTV 549
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYE--L 149
G + + DYE + +F V A D ++++ TV + V+++ND P P+
Sbjct: 515 GAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGS 574
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIVDLS 205
P + G +I KV A D D G +S L P +F+++ +G +
Sbjct: 575 LCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPI 634
Query: 206 ALNTSTIQLVVVATDTGNPPRQASVPAIMHFPE---AIVQ--QASSKLNSGTSSTVLIIL 260
+ +LV+V D+G+PP SV ++ E +V + SS G S L L
Sbjct: 635 PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREGESRLTL-YL 693
Query: 261 GVVLIVLGFV 270
V L+ + FV
Sbjct: 694 AVSLVAICFV 703
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 128 VNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPY 187
+ +V+VND PRF Q +L + PG +A D D G S R
Sbjct: 119 AEVEIVDVNDHAPRFPRQQLDLEIGEA----APPGQRFPLEKAQDADVGSNSISSYRLSS 174
Query: 188 EKMFSIN--DSGHISIVD-------LSALNTSTIQLVVVATDTGNPPRQASV 230
+ F+++ S+V L S +LV+ A D GNPPR +
Sbjct: 175 NEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTA 226
>sp|Q9Y5F7|PCDGL_HUMAN Protocadherin gamma-C4 OS=Homo sapiens GN=PCDHGC4 PE=2 SV=1
Length = 938
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
LV+ A+ N R A L VS + F ++ Y +S LE+ P VL+ + + P
Sbjct: 210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269
Query: 73 RDL----RVKYWLSNDYGER----FSI-SRQGDISLMQCLDYETEDSYRFTVYATD---T 120
DL V ++ S +R FS+ G ++L+ LD+E+E+ Y F V A D
Sbjct: 270 -DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328
Query: 121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVT 180
M ++ + +++VND P LP PG+V+ + D D G
Sbjct: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPE----SAEPGTVVALISVQDPDSGSNGD 384
Query: 181 LSLRGPYEKMFSINDS--GHISIVDLSALN---TSTIQLVVVATDTGNPP 225
+SLR P F++ + S+V L+ S+ ++V A+D GNPP
Sbjct: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 77 VKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
+ + L + + +FS+ G LD E + SY V A+D ++T T+ +++
Sbjct: 393 LPFALKSAFRNQFSLVTAGP------LDREAKSSYDIMVTASDAGNPPLSTHRTIFLNIS 446
Query: 134 NVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMF 191
+VND P F +E+F+P + PG ++ + A+D D G ++ SL P +
Sbjct: 447 DVNDNPPSFFQRSHEVFVPE----NNRPGDLLCSLAASDPDSGLNALISYSLLEPRNR-- 500
Query: 192 SINDSGHISIVDLSAL----------NTSTIQLVVVATDTGNPPRQASV 230
++ S IS+ + T T+Q V A D GNPP ++V
Sbjct: 501 DVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTV 549
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYE--L 149
G + + DYE + +F V A D ++++ TV + V+++ND P P+
Sbjct: 515 GAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGS 574
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIVDLS 205
P + G +I KV A D D G +S L P +F+++ +G +
Sbjct: 575 LCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPI 634
Query: 206 ALNTSTIQLVVVATDTGNPPRQASVPAIMHFPE---AIVQ--QASSKLNSGTSSTVLIIL 260
+ +LV+V D+G+PP SV ++ E +V + SS G S L L
Sbjct: 635 PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREGESRLTL-YL 693
Query: 261 GVVLIVLGFV 270
V L+ + FV
Sbjct: 694 AVSLVAICFV 703
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 128 VNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPY 187
+ +V+VND PRF Q +L + PG +A D D G S R
Sbjct: 119 AEVEIVDVNDHAPRFPRQQLDLEIGEA----APPGQRFPLEKAQDADVGSNSISSYRLSS 174
Query: 188 EKMFSIN--DSGHISIVD-------LSALNTSTIQLVVVATDTGNPPRQASV 230
+ F+++ S+V L S +LV+ A D GNPPR +
Sbjct: 175 NEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTA 226
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3
Length = 3503
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 27/214 (12%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL-------------SNDYGER 88
F K+EYSV+ E+ +N ++ V + + R+ Y + S+D +
Sbjct: 983 FEKDEYSVNVSESRSINAQIIQVNASDLDTGNNARITYRIVDAGVDNVTNSISSSDVSQH 1042
Query: 89 FSI-SRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRY 144
F I G I L LD ET D Y+ TV ATD V + V++ ND DP+F+
Sbjct: 1043 FGIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQK 1102
Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG-PYEKMFSIND-SGHISIV 202
+YE + +L GSV+G V A+D D G+ + P F ++ +G IS
Sbjct: 1103 SKYEFRIEE----NLRRGSVVGVVTASDLDLGENAAIRYSLLPINSSFQVHPVTGEISTR 1158
Query: 203 D-LSALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
+ L LVV A D G P R A VP +H
Sbjct: 1159 EPLDRELRELYDLVVEARDQGTPVRSARVPVRIH 1192
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 17/211 (8%)
Query: 29 ATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER 88
AT++V+ + E F ++ Y+VS EN PV +L V+ + P D V ++ GE
Sbjct: 542 ATVLVTIHDVNDNEPIFDQSFYNVSVAENEPVGRCILKVSASDP-DCGVNAMVNYTIGEG 600
Query: 89 FS-------ISRQGDISLMQCLDYETEDSYRFTVYATDT-LMTTSATVNISVVNVNDWDP 140
F S G+I + LD+E SY F V ATD ++T+A + + + +VND P
Sbjct: 601 FKHLTEFEVRSASGEICIAGELDFERRSSYEFPVLATDRGGLSTTAMIKMQLTDVNDNRP 660
Query: 141 RFRYPQYELFLPHIPLADLTPGSV-IGKVEAADGDKGDRVTLSLR---GPYEKMFSINDS 196
F +Y++ L P A S I V A D D G+ +S R G +F I+ S
Sbjct: 661 VFYPREYKVSLRESPKASSQASSTPIVAVVATDPDYGNFGQVSYRIVAGNEAGIFRIDRS 720
Query: 197 -GHISIV--DLSALNTSTIQLV-VVATDTGN 223
G I +V D+ ++ T + ++ + ATD GN
Sbjct: 721 TGEIFVVRPDMLSVRTQPMHMLNISATDGGN 751
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 21/201 (10%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSISRQ-GDISL 99
+F ++Y+ S E+ P+ ++ ++ + + R+ Y L+N+ +F+I Q G I+
Sbjct: 1898 RFKLSKYTGSVQEDAPLGTSVVQISAVDADLGVNARLVYSLANETQWQFAIDGQSGLITT 1957
Query: 100 MQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRF-RYPQYELFLPHI 154
+ LD E + SY F V ATD + + + V I+V+++ND P F RYP ++ +
Sbjct: 1958 VGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPIFERYP----YIGQV 2013
Query: 155 PLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKM---FSINDS-GHISIVD-LSAL 207
P A + PG + KV+A D D G + SL + F IN S G +S L++
Sbjct: 2014 P-ALIQPGQTLLKVQALDADLGANAEIVYSLNAENSAVSAKFRINPSTGALSASQSLASE 2072
Query: 208 NTSTIQLVVVATDTGNPPRQA 228
+ + L VVA D GNPP+ +
Sbjct: 2073 SGKLLHLEVVARDKGNPPQSS 2093
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 39/209 (18%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQ--------- 94
+F K++Y ENL V+ VT + DL D GE +I
Sbjct: 1099 KFQKSKYEFRIEENLRRGSVVGVVTAS---DL--------DLGENAAIRYSLLPINSSFQ 1147
Query: 95 -----GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQ 146
G+IS + LD E + Y V A D + + V I V +VND P PQ
Sbjct: 1148 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1207
Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRG---PYEKMFSINDSGHI- 199
++ + PG+ + +V A D D G +++ ++G +FSI+ + +
Sbjct: 1208 EDVVSVR---EEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVI 1264
Query: 200 -SIVDLSALNTSTIQLVVVATDTGNPPRQ 227
+ V L S +L V A+D GNPPR+
Sbjct: 1265 RTRVVLDHEERSIYRLGVAASDGGNPPRE 1293
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 45 FSKNEYSVSALENLPVNYVLLTV---TTNKPRDLRVKYWLS---NDYGERFSIS-RQGDI 97
F+++ Y + EN V +L V T+ + V+Y ++ +D + F I R G I
Sbjct: 233 FNQSRYFATVPENATVGTSVLQVYASDTDADENGLVEYAINRRQSDKEQMFRIDPRTGAI 292
Query: 98 SLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFL--- 151
+ + LD+ET++ + V A D + T+A V+I V +VND P +FL
Sbjct: 293 YINKALDFETKELHELVVVAKDHGEQPLETTAFVSIRVTDVNDNQPTINV----IFLSDD 348
Query: 152 --PHIPLADLTPGSVIGKVEAADGDKGDR-----VTLSLRGPYEKMFSINDSGHISIVDL 204
P I + PG + ++ D D VTL+ + + + ++S ++ IV L
Sbjct: 349 ASPKISES-AQPGEFVARISVHDPDSKTEYANVNVTLNGGDGHFALTTRDNSIYLVIVHL 407
Query: 205 SALN--TSTIQLVVVATDTGNPPRQAS 229
S L VVATD G PP AS
Sbjct: 408 PLDREIVSNYTLSVVATDKGTPPLHAS 434
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 74 DLRVKYWL---SNDYGER-FSISRQ-GDISLMQCLDYETEDSYRFTVYATDTL-----MT 123
DLRV Y L + D E F I R G++ + + LD E + +R + A DT +
Sbjct: 1354 DLRVTYTLNPLTKDLIEAAFDIDRHSGNLVVARLLDREVQSEFRLEIRALDTTASNNPQS 1413
Query: 124 TSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKVEAADGDKGDRVTLS 182
++ TV I V +VND P +PQ + L +++ TP G++I A D D G L
Sbjct: 1414 SAITVKIEVADVNDNAP--EWPQDPIDL---QVSEATPVGTIIHNFTATDADTGTNGDLQ 1468
Query: 183 LR 184
R
Sbjct: 1469 YR 1470
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ-- 146
G +SL LD+E Y V A D + TS TV + +++ ND P F P
Sbjct: 1496 GALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSS 1555
Query: 147 ----YELFLPHIPLADLTP-GSVIGKVEAADGDKGDRVTLSLR---GPYEKMFSIN-DSG 197
LF ++D T G V+ + A D D GD L+ G E F IN +G
Sbjct: 1556 GGKTASLF-----ISDATRIGEVVAHIVAVDEDSGDNGQLTYEITGGNGEGRFRINSQTG 1610
Query: 198 HISIVDLSALNTSTIQ------LVVVATDTGNP-PRQASV 230
I +V T ++ L++ A D G P P+++S+
Sbjct: 1611 IIELVKSLPPATEDVEKGGRFNLIIGAKDHGQPEPKKSSL 1650
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 9 QPITLV-VRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTV 67
QP+ ++ + A N A A + +S R F K Y+ E++P V+ +V
Sbjct: 737 QPMHMLNISATDGGNLRSNADAVVFLSIIDAMQRPPIFEKARYNYYVKEDIPRGTVVGSV 796
Query: 68 ---TTNKPRDLRVKYWL-SNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYAT--DT 120
+ + V+Y + S D FSI + G+I + + LD+E + + AT +
Sbjct: 797 IAASGDVAHRSPVRYSIYSGDPDGYFSIETNSGNIRIAKPLDHEAKSQVLLNIQATLGEP 856
Query: 121 LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--R 178
+ VNI V +VND P F + +P A+L G+ + A D D G +
Sbjct: 857 PVYGHTQVNIEVEDVNDNAPEFEASMVRISVPE--SAEL--GAPLYAAHAHDKDSGSSGQ 912
Query: 179 VTLSL-RGPYEKMFSIN-DSGHISIVD-LSALNTSTIQLVVVATDTGNP 224
VT SL + + +F+I+ SGH+ + L ++ L+V ATD G P
Sbjct: 913 VTYSLVKESGKGLFAIDARSGHLILSQHLDYESSQRHTLIVTATDGGVP 961
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 76 RVKYWLSNDYGER-FSI-SRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNI 130
+V Y L + G+ F+I +R G + L Q LDYE+ + V ATD ++T+ T+ +
Sbjct: 912 QVTYSLVKESGKGLFAIDARSGHLILSQHLDYESSQRHTLIVTATDGGVPSLSTNLTILV 971
Query: 131 SVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR------ 184
V +VND P F +Y + + + + I +V A+D D G+ ++ R
Sbjct: 972 DVQDVNDNPPVFEKDEYSVNVSE----SRSINAQIIQVNASDLDTGNNARITYRIVDAGV 1027
Query: 185 ---------GPYEKMFSI-NDSGHISI-VDLSALNTSTIQLVVVATDTGNPPRQASVPAI 233
+ F I +SG I + L QL V+ATD G P A I
Sbjct: 1028 DNVTNSISSSDVSQHFGIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVI 1087
Query: 234 MHFPEA 239
+ +A
Sbjct: 1088 VRVLDA 1093
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELF 150
S G ++ DYE Y + A+D S V + + + +++ P+F Y
Sbjct: 2865 SESGLVTSAFVFDYEQRQRYDMELLASDMGGKKASVAVRVEIESRDEFTPQFTERTYRFV 2924
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDS 196
LP L G V+G+V A D D G RV L P+ F +N S
Sbjct: 2925 LP--AAVALPQGYVVGQVTATDSDSGPDGRVVYQLSAPHSH-FKVNRS 2969
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 89/220 (40%), Gaps = 47/220 (21%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT-------NKPRDLRVKYWLSNDYGERFSISRQ-G 95
+F + Y + LEN+P +L VT N + ++ND F + Q G
Sbjct: 1665 RFLQAVYRATILENVPSGSFVLQVTAKSLHGAENANLSYEIPAGVANDL---FHVDWQRG 1721
Query: 96 DISLMQCLDYETEDSYRFTVY-------------------ATDTLMTTS-------ATVN 129
I+ D E++ SY VY ++D++ TS AT+
Sbjct: 1722 IITTRGQFDRESQASYVLPVYVRDANRQSTLSSSAVRKQRSSDSIGDTSNGQHFDVATIY 1781
Query: 130 ISVVNVNDWDPRFRYPQ-YELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR---G 185
I+V +VND P FR Y L +P + PG VI V A+D D+G L G
Sbjct: 1782 ITVGDVNDNSPEFRPGSCYGLSVPE----NSEPG-VIHTVVASDLDEGPNADLIYSITGG 1836
Query: 186 PYEKMFSIN-DSGHISIVDLSALNTSTIQLVVVATDTGNP 224
FSI+ SG +S L S L + A+D G P
Sbjct: 1837 NLGNKFSIDSSSGELSARPLDREQHSRYTLQIQASDRGQP 1876
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 96 DISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
D+ + LD ET Y + A D + TVNI++ +VND P F +Y +P
Sbjct: 184 DLQISGFLDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVP 243
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSL-----RGPYEKMFSIN-DSGHISIVDLSA 206
+ T G+ + +V A+D D + + + E+MF I+ +G I I
Sbjct: 244 E----NATVGTSVLQVYASDTDADENGLVEYAINRRQSDKEQMFRIDPRTGAIYINKALD 299
Query: 207 LNTSTI-QLVVVATDTGNPP 225
T + +LVVVA D G P
Sbjct: 300 FETKELHELVVVAKDHGEQP 319
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 89 FSISR-QGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRF---RY 144
F++ R G + L + LDYE + Y V A+D + + V + ND P F +
Sbjct: 2425 FALDRYSGKLVLKRRLDYELQQEYELDVIASDAAHEARTVLTVRVNDENDNAPVFLAQQP 2484
Query: 145 PQYELFLPHIP--LADLTPGSVIGKVEAADGDK--GDRVTLSLRGPYEKMFSINDSGHIS 200
P Y LP I L+ + V A D D + + + P ++ FS++ S +
Sbjct: 2485 PAYFAILPAISEISESLSVDFDLLTVNATDADSEGNNSKVIYIIEPAQEGFSVHPSNGVV 2544
Query: 201 IVDLS----ALNTSTIQLV-VVATDTGNPPRQAS 229
V++S A+++S V ++A D G P ++S
Sbjct: 2545 SVNMSRLQPAVSSSGDYFVRIIAKDAGKPALKSS 2578
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 85 YGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDP 140
+ + F I Q G I+ +D ETE + TV A D ++++ATV +++ +VND +P
Sbjct: 497 HAQWFQIDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEP 556
Query: 141 RFRYPQYELFLPHIPLADLTP-GSVIGKVEAADGDKG--DRVTLSLRGPYEKM--FSIND 195
F Y ++ +A+ P G I KV A+D D G V ++ ++ + F +
Sbjct: 557 IFDQSFY-----NVSVAENEPVGRCILKVSASDPDCGVNAMVNYTIGEGFKHLTEFEVRS 611
Query: 196 -SGHISIV-DLSALNTSTIQLVVVATDTG 222
SG I I +L S+ + V+ATD G
Sbjct: 612 ASGEICIAGELDFERRSSYEFPVLATDRG 640
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
LD E D Y+ + ATD MT +AT+ + +V+VND P F
Sbjct: 2332 VLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPTF 2375
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 103 LDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +Y +V ATD + S ++ + + +VND P F Y + + +AD
Sbjct: 409 LDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANV--MEVAD- 465
Query: 160 TPGSVIGKVEAADGDKG--DRVTLSLRGPYE---KMFSIN-DSGHISIVDLSALNTSTI- 212
PG+ + +V A D D+G +T SL E + F I+ +G I+ T +
Sbjct: 466 -PGTSVLQVLAHDRDEGLNSALTYSLAETPETHAQWFQIDPQTGLITTRSHIDCETEPVP 524
Query: 213 QLVVVATDTGNPP 225
QL VVA D G PP
Sbjct: 525 QLTVVARDGGVPP 537
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 89 FSISRQ-GDISLMQ--CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
F I R G+I +++ L T+ + + ATD A V +S+++ P F
Sbjct: 715 FRIDRSTGEIFVVRPDMLSVRTQPMHMLNISATDGGNLRSNADAVVFLSIIDAMQRPPIF 774
Query: 143 RYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSL-RGPYEKMFSIN-DSGH 198
+Y ++ D+ G+V+G V AA GD R V S+ G + FSI +SG+
Sbjct: 775 EKARYNYYVKE----DIPRGTVVGSVIAASGDVAHRSPVRYSIYSGDPDGYFSIETNSGN 830
Query: 199 ISIVD-LSALNTSTIQLVVVATDTGNPP 225
I I L S + L + AT G PP
Sbjct: 831 IRIAKPLDHEAKSQVLLNIQAT-LGEPP 857
>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2
Length = 4981
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 120/269 (44%), Gaps = 42/269 (15%)
Query: 2 INEDD-----FLQPITLV---VRAIQYDNQDRYALATLIVSKAG--TSLREL-------- 43
+ EDD FL +T V RA+ Y+ Q Y L G T++R
Sbjct: 1880 VEEDDGDGVFFLNLVTGVFNLTRALDYETQQYYILTVRAEDGGGQSTTIRAYFNILDVND 1939
Query: 44 ---QFSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISRQGD 96
FS + YS S +ENLP+ +L D ++ Y + S D +F++ + G
Sbjct: 1940 NPPVFSMSSYSTSLMENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLGQFAVDKHGV 1999
Query: 97 ISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRFRYPQYELF 150
+ ++ LD E++ Y + D + T++A V+I +++VND P F P+
Sbjct: 2000 LKTLKALDRESQSFYNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSPK---- 2055
Query: 151 LPHIPLADLTP-GSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIV-DLS 205
L +IP + TP +V+ K +A D D G + +L P FSI G + + +L
Sbjct: 2056 LTYIP--ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPSGNKFSIGTIDGEVHLTGELD 2113
Query: 206 ALNTSTIQLVVVATDTGNPPRQASVPAIM 234
S L VVATD G PP +S ++
Sbjct: 2114 REEVSNYSLTVVATDKGQPPLSSSTEVVV 2142
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 50 YSVSALENLPVNYVLLTVTTNKPRDLRV----KYWLSNDYGERFSIS-RQGDISLMQCLD 104
+S EN P+ Y + VTT+ D+ + +Y + D F+I+ GDI + + L+
Sbjct: 2779 FSAYVSENSPLGYTVTRVTTSD-EDIGINAISRYSIV-DTSLPFTINPNTGDIVISRPLN 2836
Query: 105 YETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
E D YR V A D+ T S V I V ++ND PRF P Y L P +P GS
Sbjct: 2837 REDTDRYRIRVSAHDSGWTVSTDVTIFVTDINDNTPRFSRPSYYLDCPELPEL----GSR 2892
Query: 165 IGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHI---------SIVDLSALNTSTI 212
+ +V A D D+G +V ++ E F IN +G I ++ S +N +
Sbjct: 2893 VTQVSATDPDEGSNGQVFYFIKSQSE-YFRINATTGEIFNKQVLKYQNVSGFSNVNINRH 2951
Query: 213 QLVVVATDTGNP 224
+V A+D GNP
Sbjct: 2952 SFIVTASDRGNP 2963
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 77 VKYWLSNDYGERFSIS-RQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNV 135
V Y L + + F I GD+ + LD E Y V A D L ++ +NI++ +V
Sbjct: 1775 VTYALISGADDSFRIDPESGDLIATKRLDREHRSKYSLLVRADDGLQSSDMRINITISDV 1834
Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG 176
ND PRF P Y +P D TPGS++ + A D D G
Sbjct: 1835 NDHTPRFSRPVYSFDIPE----DTTPGSLVAAILATDDDSG 1871
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 56 ENLPVNYVLLTVTTNKPR---DLRVKYWLSNDYGERFSISR-QGDISLMQCLDYETEDSY 111
EN P++ V+ P + ++Y L N G +FSI G++ L LD E +Y
Sbjct: 2061 ENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPSGNKFSIGTIDGEVHLTGELDREEVSNY 2120
Query: 112 RFTVYATDTL---MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
TV ATD +++S V + V+++ND +P F Y + + ++ G+ I +V
Sbjct: 2121 SLTVVATDKGQPPLSSSTEVVVMVLDINDNNPVFAQAMYRVQIKE----NILTGTDIIQV 2176
Query: 169 EAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIV-DLSALNTSTIQLVVVATDTGN 223
AAD D+G + + G + F I+ +G I++ L T L V ATD G+
Sbjct: 2177 SAADNDEGTNGQVRYGIVGGNTHQEFRIDSVTGAITVAKSLDRETTPAYTLTVQATDRGS 2236
Query: 224 PPRQASV 230
PR S
Sbjct: 2237 SPRTDSC 2243
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 56 ENLPVNYVLLTVTTNKPRDLRVKYWL-SNDYGERFSISR-QGDISLMQCLDYETEDSYRF 113
EN PV ++ T+T + R + Y++ S + G+ F I G +S+ Q LD+E Y
Sbjct: 2580 ENQPVGTLVTTITGSSLRGETLSYYIASGNLGDTFQIDPLTGQVSISQPLDFEKIQKYVV 2639
Query: 114 TVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEA 170
+ A D ++ ++I+V+++ND P F + + F+ I L +L+P ++ V A
Sbjct: 2640 WIEARDGGFPPFSSYEKLDITVLDINDNAPTF---EEDPFVSEI-LENLSPRKIL-TVSA 2694
Query: 171 ADGDKGDRVTLS---LRGPYEKMFSINDS-GHI-SIVDLSALNTSTIQLVVVATDTGNPP 225
D D G L + G E F+IN + G I SI L S +L V ++D G+P
Sbjct: 2695 TDKDSGPNGQLDYEIVNGNQESSFTINHATGEIRSIRPLDREKISHYELTVKSSDKGSPS 2754
Query: 226 RQASVPAIM 234
+ SV I+
Sbjct: 2755 QSTSVKVII 2763
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 96/192 (50%), Gaps = 10/192 (5%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVT-TNKPRDLRVKYWLS-NDYGERFSISR-QGDISLMQ 101
FS+ YS EN+ + Y + +V+ T + + Y ++ D F+++ G ++
Sbjct: 793 FSQAAYSFVVFENVALGYHVGSVSATTMDLNANISYLITTGDQRGMFAMNPVTGQLTTAS 852
Query: 102 CLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP 161
+D E + Y+ + A+ +T VNI+V ++ND P F + + +
Sbjct: 853 VIDREEQSFYQLKIVASGGAVTGDTVVNITVKDLNDNAPHFLQAVESINA----VENWQA 908
Query: 162 GSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDLSALNTSTIQLVVVA 218
G I + +A D D+G RV SL+ + +F+IN+ +G+IS++ ++ + Q+ +VA
Sbjct: 909 GHSIFQAKAVDPDEGVNGRVLYSLKQNPKNLFTINEQNGNISLLGALDVHAGSYQVEIVA 968
Query: 219 TDTGNPPRQASV 230
+D G P +S+
Sbjct: 969 SDMGVPQLSSSI 980
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 11 ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNE-YSVSALENLPVNYVLLTVTT 69
I L + A + + A L+V+ + + FS+ E Y VS +EN P LL +
Sbjct: 548 IVLNISARDQGVHPKVSYAQLVVTVLDVNDEKPVFSQPEGYEVSVVENAPTGTELLVLGA 607
Query: 70 NKPRDL----RVKYWLSNDYGER--FSISR-QGDISLMQCLDYETEDSYRFTVYATD--- 119
RDL V++ L ++ F + G +S LD E + Y ++ ATD
Sbjct: 608 TD-RDLGDNGTVRFSLQEAENDQRLFRLDPVSGRLSTASSLDREEQAFYCLSILATDLGS 666
Query: 120 TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRV 179
+++A VN+S++++ND P F QY HI + GS + V A D D G
Sbjct: 667 PPQSSTAQVNVSLLDINDNSPVFYPVQY---FAHI-QENEPGGSYVTTVSATDPDMGPNG 722
Query: 180 TL--SLRGPYEKMFSIN-DSGHISI-VDLSALNTSTIQLVVVATDTGN--PPRQASV 230
T+ S+ F I+ SG IS + L + QL VVATD GN P QA V
Sbjct: 723 TVKYSISAGDRSRFQIHAKSGVISTKMALDREEKTAYQLQVVATDGGNLQSPNQAIV 779
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSN-DYGERFSISRQGDISLM 100
F + Y V+ E+ PVN V + + + Y +++ + G+ F I G + +
Sbjct: 996 FDQISYEVTLSESEPVNSRFFKVQASDKDSGANGEIAYTITDGNNGDAFGIFPDGQLYIK 1055
Query: 101 QCLDYETEDSYRFTVYATDTLMTT-SATVNISVV--NVNDWDPRFRYPQYELFLPHIPLA 157
LD E +D Y V A+D + SATVN++V+ +VND P F Y + A
Sbjct: 1056 SELDRELQDRYVLLVVASDRAVEPLSATVNVTVLLEDVNDNRPLFNSTNYTFYFEEEQRA 1115
Query: 158 DLTPGSVIGKVEAADGDKG 176
GS +GKV A D D G
Sbjct: 1116 ----GSFVGKVSAVDKDFG 1130
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 81 LSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVN 136
L + +F+I S G ++L+ LDYE +Y + A D+ + ++ T++I +++ N
Sbjct: 1250 LKGNEERQFAIDSFSGQVTLVGKLDYEATSAYSLLIQAVDSGAIPLNSTCTLSIDILDEN 1309
Query: 137 DWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTL--SLRGPY-EKMFSI 193
D P F P+ LF+ L ++ G ++ V A D D G L ++ G FSI
Sbjct: 1310 DNTPSF--PKSTLFVD--VLENMRIGELVSSVTATDSDSGVNADLHYTITGSNNHGTFSI 1365
Query: 194 N-DSGHISIVDLSALNTSTI-QLVVVATDTGNPPRQASVPAIMH 235
+ ++G I + T ++ +L + A D G PPR +++ ++
Sbjct: 1366 SPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIQ 1409
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS------NDYGERFSI-SRQGD 96
+FS+N S + E+ + V+ TV+ + RD + +S N+ G F+I S G
Sbjct: 3090 EFSQNHISATIPESHSIGSVVRTVSA-RDRDTAMNGLISYNIISGNEEG-IFAINSSTGV 3147
Query: 97 ISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
++L + LDYE + T+ ATD T ++ +SV++VND P F P + F P
Sbjct: 3148 VTLAKALDYEMSSKHEMTISATDGGWVARTGYCSLTVSVIDVNDNSPVF-VP--DEFFPT 3204
Query: 154 IPLADLTPGSVIGKVEAADGDKG 176
+ + + G+ + + A D D G
Sbjct: 3205 V-MENAPSGTTVIHLNATDADSG 3226
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELF 150
G I LD ET+D+Y V A+D +++S +V +++ +VND PRF Q+ +
Sbjct: 2417 GQIITSALLDRETKDNYTLVVVASDAGSPESLSSSTSVLVTITDVNDNPPRF---QHHPY 2473
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGDRVTL--SLRGPYEKMFSINDSGHISIVDLSALN 208
+ HIP + PGS + V D D G L SL G + F I D +I+ L+
Sbjct: 2474 VTHIP-SPTPPGSFVFAVTVTDADIGSNSELHYSLSGRNSEKFHI-DPLRGAIMAAGPLS 2531
Query: 209 -TSTIQLVVVATDTGNPPRQASVPAIMHF 236
S + V D G+ P+ S + F
Sbjct: 2532 GASEVTFSVHVKDGGSFPKTDSTTVTVRF 2560
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 25 RYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL 81
R +L VS + F +E+ + +EN P ++ + + + + Y +
Sbjct: 3176 RTGYCSLTVSVIDVNDNSPVFVPDEFFPTVMENAPSGTTVIHLNATDADSGANAVIAYTV 3235
Query: 82 SNDYGERFSIS-RQGDISLMQCLDYETEDSYRFTVYA---TDTLMTTSATVNISVVNVND 137
+ + F I G I+ LD+ET+ SY TV A D + ATV+I + N+
Sbjct: 3236 QSSDSDLFVIDPNMGVITTQGFLDFETKQSYHLTVKAFNVPDEEKCSFATVDIQLKGTNE 3295
Query: 138 WDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD---GDKGDRVTLSLRGPYEKMFSIN 194
+ PRF Y + + G+ +G+V A+D G G+ L +K F IN
Sbjct: 3296 YVPRFVSKLYYFEVSEA----ASRGTAVGEVFASDRDMGADGEVHYLIFGNSRKKGFQIN 3351
Query: 195 D-SGHISIVD-LSALNTSTIQLVVVATDTGN 223
+G I + L + L V+A + GN
Sbjct: 3352 KMTGQIYVSGLLDREKEERVSLKVLAKNFGN 3382
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 89 FSISRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYP 145
FS+S G +S + +D E + +V D+ M+++ TV+I+V++ ND + R
Sbjct: 3560 FSLSTAGVLSTTREIDREQIADFYLSVVTRDSGAPQMSSTGTVHITVLDQNDNPSQSR-- 3617
Query: 146 QYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLS 205
E+F+ + +L PG +G V+ D D D SL +FSI +G +
Sbjct: 3618 TVEIFVNY--YGNLFPGGTLGSVKPQDPDVLDSFHCSLTSGVTSLFSI-PAGSCDLSSQP 3674
Query: 206 ALNTSTIQLVVVATD 220
T L VV++D
Sbjct: 3675 RSTDGTFDLTVVSSD 3689
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 24/167 (14%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKP-----RDLRVKYWLSNDYGERFSIS-RQGDIS 98
F K+ V LEN+ + ++ +VT DL SN++G FSIS G I
Sbjct: 1315 FPKSTLFVDVLENMRIGELVSSVTATDSDSGVNADLHYTITGSNNHGT-FSISPNTGSIF 1373
Query: 99 LMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELF---LP 152
L + LD+ET+ Y+ + A D +++ +V I V + ND P F P ++F +
Sbjct: 1374 LAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIQVRDFNDNPPSF--PPGDIFKSIVE 1431
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSL----RGPYEKMFSIND 195
+IPL G+ + V A D D LS + P FSI++
Sbjct: 1432 NIPL-----GTSVISVTAHDPDADINGQLSYAIIQQMPRGNHFSIDE 1473
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSISRQ-GDISLM 100
F + Y E+ V +L V ++ + ++Y L D G F + + G I++
Sbjct: 250 FGSSHYQAGVPEDAVVGSSVLQVAAADADEGTNADIRYRL-QDEGTPFQMDPETGLITVR 308
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDP--RFRY-PQYELFLPHI 154
+ LD+E Y TV ATD +T A I +++VND DP +FRY P +
Sbjct: 309 EPLDFEARRQYSLTVQATDRGVPSLTGRAEAFIQLLDVNDNDPVVKFRYFPATSRYASVD 368
Query: 155 PLADLTPGSVIGKVEAADGDK----GDRVTLSLRGPYEKMFSINDSG--HISIVDL-SAL 207
A + G+V+ + D D G+ L G ++ F + S ++S++ + SAL
Sbjct: 369 ENAQV--GTVVALLTVTDADSPAANGNISVQILGGNEQRHFEVQRSKVPNLSLIKVASAL 426
Query: 208 NTSTI---QLVVVATDTGNPPRQASVPA 232
+ I L V +D P A V A
Sbjct: 427 DRERIPSYNLTVSVSDNSGAPPTAEVQA 454
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 128 VNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPY 187
VN++V ++ND P F Y+ +P D GS + +V AAD D+G + R
Sbjct: 236 VNVTVQDINDNPPVFGSSHYQAGVPE----DAVVGSSVLQVAAADADEGTNADIRYRLQD 291
Query: 188 EKM-FSIN-DSGHISI---VDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQ 242
E F ++ ++G I++ +D A + L V ATD G VP++ EA +Q
Sbjct: 292 EGTPFQMDPETGLITVREPLDFEARRQYS--LTVQATDRG-------VPSLTGRAEAFIQ 342
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPR--DLRVKYWLSNDYGER-FSISRQ-GDISLM 100
F ++ + LENL +L T+K + ++ Y + N E F+I+ G+I +
Sbjct: 2671 FEEDPFVSEILENLSPRKILTVSATDKDSGPNGQLDYEIVNGNQESSFTINHATGEIRSI 2730
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ LD E Y TV ++D +TS V IS+++ ND PRF ++F ++ +
Sbjct: 2731 RPLDREKISHYELTVKSSDKGSPSQSTSVKVIISILDENDNAPRFS----QIFSAYV--S 2784
Query: 158 DLTP-GSVIGKVEAADGDKG 176
+ +P G + +V +D D G
Sbjct: 2785 ENSPLGYTVTRVTTSDEDIG 2804
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 97 ISLMQCLDYETEDSYRFTVYATDT----------LMTTSATVNISVVNVNDWDPRFRYPQ 146
I + LD E SY TV +D ++ A++ I V ++ND P F
Sbjct: 420 IKVASALDRERIPSYNLTVSVSDNSGAPPTAEVQARSSVASLVIFVNDINDHPPVFEQQV 479
Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSINDSGHISIVD 203
Y + L ++ PGS + V A DGD G L + G F I++ H +V
Sbjct: 480 YRVNLSE----EVPPGSYVSGVSATDGDSGLNANLRYSIVSGNGLGWFHISE--HSGLVT 533
Query: 204 LSALN------TSTIQLVVVATDTGNPPR 226
SA S I L + A D G P+
Sbjct: 534 TSAAGGLDRELASQIVLNISARDQGVHPK 562
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 45 FSKNEYSVSALENLPV--NYVLLTVTTNK---PRDLRVKYWLSNDYGERFSISRQGDISL 99
F + YSV+ ENL +L V + P L + F ++ G++ +
Sbjct: 2259 FELSPYSVNVPENLGTLPRAILQVVARDDDQGPNSQLSYVLLGGNEDNAFVLTASGELRV 2318
Query: 100 MQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
Q LD E D + V A D +T + T+NI V ++ND P F ++L I
Sbjct: 2319 TQSLDREARDHFVLVVTAADAGSPALTGTGTINIIVDDINDNVPTF---ANNMYLTSI-A 2374
Query: 157 ADLTPGSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSINDS-GHI---SIVDLSALNTS 210
D G+ + V A+D D ++ S+ G F+IN S G I +++D +
Sbjct: 2375 EDARTGTDVLLVNASDADAAANAVISYSIIGG-NSQFTINPSTGQIITSALLDRETKDNY 2433
Query: 211 TIQLVVVATDTG--------------------NPPRQASVPAIMHFP 237
T LVVVA+D G NPPR P + H P
Sbjct: 2434 T--LVVVASDAGSPESLSSSTSVLVTITDVNDNPPRFQHHPYVTHIP 2478
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 30/170 (17%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
G +L + LDYET+ Y TV A D +T+ ++++VND P F Y L
Sbjct: 1896 GVFNLTRALDYETQQYYILTVRAEDGGGQSTTIRAYFNILDVNDNPPVFSMSSYSTSL-- 1953
Query: 154 IPLADLTPGSVIGKVEAADGDKGDRVTLSLR---GPYEKMFSINDSGH------------ 198
+ +L GS + D D G LS G F+++ G
Sbjct: 1954 --MENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLGQFAVDKHGVLKTLKALDRESQ 2011
Query: 199 ------ISIVDL----SALNTSTIQLVVVATDTGNPPRQASVPAIMHFPE 238
I + DL ++ TST Q+ ++ D + P P + + PE
Sbjct: 2012 SFYNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSPKLTYIPE 2061
>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens
GN=CELSR2 PE=1 SV=1
Length = 2923
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Query: 25 RYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL 81
R ALATL + T+ + F + EY S ENL V Y +LTV + P + + Y L
Sbjct: 269 RSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRL 328
Query: 82 SNDYG----ERFSIS-RQGDISLMQCLDYETEDSYRFTVYATDT-----LMTTSATVNIS 131
G E F I R G I +D E +SY+ TV A+D +T+A V +S
Sbjct: 329 LEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLS 388
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYE 188
V + ND P+F +Y + + D+TPG+ + +V A+D DKG + + G
Sbjct: 389 VEDDNDNAPQFSEKRYVVQV----REDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNAR 444
Query: 189 KMFSIN-DSGHISIVD-LSALNTSTIQLVVVATDTGNPP 225
F ++ +G + +V L T L V A D G PP
Sbjct: 445 GQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPP 483
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSIS---RQGDIS 98
F + + LE++P+ Y++L V + + R++Y L+ G F + G IS
Sbjct: 505 FVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAG-VGHDFPFTINNGTGWIS 563
Query: 99 LMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP 155
+ LD E D Y F V A D +T SA+V+++V++VND +P F P+Y + L
Sbjct: 564 VAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNE-- 621
Query: 156 LADLTPGSVIGKVEAADGDKGDRVTLSL-RGPYEKMFSINDSGHISIVDLS 205
D G+ + V A D D +T + G FSI +V L+
Sbjct: 622 --DAAVGTSVVTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLA 670
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLR--VKYWL-SNDYGERFSISRQ---GDIS 98
F++ EY+V E+ V ++TV+ RD + Y + S + RFSI+ Q G +S
Sbjct: 610 FTQPEYTVRLNEDAAVGTSVVTVSAVD-RDAHSVITYQITSGNTRNRFSITSQSGGGLVS 668
Query: 99 LMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
L LDY+ E Y V A+D +A + ++V + N P F+ Y + + D
Sbjct: 669 LALPLDYKLERQYVLAVTASDGTRQDTAQIVVNVTDANTHRPVFQSSHYTVNVNE----D 724
Query: 159 LTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISI-VDLSALNTSTIQLV 215
G+ + + A D D G+ R+T + + D+G ++ +L + + L
Sbjct: 725 RPAGTTVVLISATDEDTGENARITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLA 784
Query: 216 VVATDTGNP 224
+ A D G P
Sbjct: 785 ITARDNGIP 793
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSIS-RQGDISL 99
F ++E+ V EN P+ + VT P + ++ Y + + E F + G+++
Sbjct: 921 FEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGELTA 980
Query: 100 MQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH--IPLA 157
+ LDYE Y + AT + + ATV++ +++ ND P +E+ + +
Sbjct: 981 LVDLDYEDRPEYVLVIQATSAPLVSRATVHVRLLDRNDNPPVLG--NFEILFNNYVTNRS 1038
Query: 158 DLTPGSVIGKVEAADGDKGDRVTLSL-RG 185
PG IG+V A D D D +T S RG
Sbjct: 1039 SSFPGGAIGRVPAHDPDISDSLTYSFERG 1067
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 16/223 (7%)
Query: 15 VRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVN--YVLLTVT-TNK 71
V A+ + R A ++V+ + F + Y+V+ E+ P VL++ T +
Sbjct: 682 VLAVTASDGTRQDTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDT 741
Query: 72 PRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLM---TTSATV 128
+ R+ Y++ + + + G ++ LDYE + SY + A D + + + +
Sbjct: 742 GENARITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYL 801
Query: 129 NISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRV--TLSLR 184
I V +VND P+F Y+ + D+ P + + ++ A D D G RV T
Sbjct: 802 EILVNDVNDNAPQFLRDSYQGSV----YEDVPPFTSVLQISATDRDSGLNGRVFYTFQGG 857
Query: 185 GPYEKMFSINDSGHI--SIVDLSALNTSTIQLVVVATDTGNPP 225
+ F + + I ++ L N + L A D G PP
Sbjct: 858 DDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPP 900
>sp|O60245|PCDH7_HUMAN Protocadherin-7 OS=Homo sapiens GN=PCDH7 PE=1 SV=2
Length = 1069
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 37 GTSLRELQFSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSIS-R 93
G S+ E+ F +N N+P V +L + ++ + Y L + F+I
Sbjct: 536 GQSVVEVYFPEN--------NIPGERVATVLATDADSGKNAEIAYSLDSSVMGIFAIDPD 587
Query: 94 QGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELF 150
GDI + LD E D Y F V A D ++ S TV + V + ND DP+F + +
Sbjct: 588 SGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDVFTFY 647
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSI-NDSGHI-SIVDLSAL 207
+ +L P S +G V D DKG +SL +FSI ND+G I S +
Sbjct: 648 VKE----NLQPNSPVGMVTVMDADKGRNAEMSLYIEENNNIFSIENDTGTIYSTMSFDRE 703
Query: 208 NTSTIQLVVVATDTGNPPRQASV 230
+ +T V A D G+PPR A+
Sbjct: 704 HQTTYTFRVKAVDGGDPPRSATA 726
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 135/318 (42%), Gaps = 50/318 (15%)
Query: 30 TLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVT---TNKPRDLRVKYWLSNDYG 86
T+IV A + + +F ++ ++ ENL N + VT +K R+ + ++ +
Sbjct: 624 TVIVQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEEN-N 682
Query: 87 ERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
FSI G I D E + +Y F V A D + +ATV++ V++ ND P
Sbjct: 683 NIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTV 742
Query: 143 RYPQ---YELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-D 195
P+ Y L P + +V+ V A D D G L+ + G K+F I+
Sbjct: 743 TLPKNISYTLLPPSSNVR-----TVVATVLATDSDDGINADLNYSIVGGNPFKLFEIDPT 797
Query: 196 SGHISIV-DLSALNTSTIQLVVVATDTGNPPR--------------------QASVPAIM 234
SG +S+V L+ + +LVV D+G P + + + +
Sbjct: 798 SGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVNESVSNATAIDSQIARSL 857
Query: 235 HFPEAIVQQASSKLNSGTSSTVL-IILGVVLIVLGFVIILLILYIHKNKHTKN-NGPPGS 292
H P + Q + + S L I++GVV ++ ++I+LI+ + + +KN NG
Sbjct: 858 HIP--LTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVVMARYCRSKNKNGYEAG 915
Query: 293 SHSKNDSFLSNVILPEKH 310
D F P++H
Sbjct: 916 KKDHEDFF-----TPQQH 928
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 93 RQGDISLMQCLDYETEDSYRFTVY---ATDTLMTTSATVNISVVNVNDWDPRFRYPQYEL 149
+Q + + LD E DSY T+ D ++ A + + + +VND PRF YE
Sbjct: 256 KQPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEA 315
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKG---------DRVTLSLRGPYEKMFSIND-SGHI 199
L + PG+ I ++ AAD D G T S+R ++ +++ SG +
Sbjct: 316 DLAE----NSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR----RLLRLDETSGWL 367
Query: 200 SI---VDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHF 236
S+ +D +N ++ V+A D G PP+ +++
Sbjct: 368 SVLHRIDREEVN--QLRFTVMARDRGQPPKTDKATVVLNI 405
>sp|Q5DRB5|PCDG5_PANTR Protocadherin gamma-A5 OS=Pan troglodytes GN=PCDHGA5 PE=3 SV=1
Length = 931
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND---YGERFSI-SRQGDI 97
F+ +EYSVS EN+PV LL +T P + ++ Y N+ E F + S G+I
Sbjct: 242 FTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEI 301
Query: 98 SLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
S +Q LDYE Y V A D + SA V ++V +VND P E+ L +
Sbjct: 302 STLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAP-------EVILTSLTS 354
Query: 157 A---DLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMF----SINDSGH-ISIVDLSALN 208
+ D PG+VI DGD G+ ++ P F S+++ H ++ DL
Sbjct: 355 SLSEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLVTTRDLDREE 414
Query: 209 TSTIQLVVVATDTGNPP 225
TS + + D G PP
Sbjct: 415 TSDYNITLTVMDHGTPP 431
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 48/285 (16%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPR---DLRVKYWLSNDYGERFSISR-------Q 94
F + YS S EN P + +VT + P + RV Y L+ D + +S
Sbjct: 452 FPQASYSTSVPENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDT 511
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ DYE + V A+D+ ++++ ++++ V++ ND P YP L
Sbjct: 512 GVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPA----L 567
Query: 152 P-----HIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHI- 199
P + LA + PG ++ KV A D D G LS L+ +F++ +G +
Sbjct: 568 PTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTGEVR 627
Query: 200 ---SIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIM----HFPEAIVQQASSKLNSGT 252
+++D AL S LVV D G PP A+V + P+ + S K
Sbjct: 628 TARALLDRDALKQS---LVVAVEDHGQPPLSATVTVTVAVADRIPDILADLGSIKTPIDP 684
Query: 253 SSTVLII------LGVVLIVLGFVIILLILYI---HKNKHTKNNG 288
L + V + L FVI+LL+L + HK++ + G
Sbjct: 685 EDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEG 729
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E Y T+ D ++T + + + V +VND P F Y +P +
Sbjct: 410 LDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVPE----NN 465
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLR------GPYEKMFSIN-DSGHI-SIVDLSALNT 209
G I V A D D GD RVT SL P SIN D+G + ++
Sbjct: 466 PRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQL 525
Query: 210 STIQLVVVATDTGNPPRQASV 230
+QL V A+D+GNPP ++V
Sbjct: 526 RDLQLWVTASDSGNPPLSSNV 546
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 96 DISLMQCLDYETEDSYRFTVYA---TDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
++ L Q LD E E + + A D +++ + + ++V++ ND P F +Y + +P
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 153 -HIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKM---FSINDS-GHISIVDLS 205
+IP+ G+ + + A D D+G ++T S R EK+ F ++ + G IS +
Sbjct: 253 ENIPV-----GTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSL 307
Query: 206 ALNTSTIQLV-VVATDTG 222
S L+ VVA D G
Sbjct: 308 DYEESRFYLMEVVAQDGG 325
>sp|Q9Y5G8|PCDG5_HUMAN Protocadherin gamma-A5 OS=Homo sapiens GN=PCDHGA5 PE=2 SV=1
Length = 931
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSND---YGERFSI-SRQGDI 97
F+ +EYSVS EN+PV LL +T P + ++ Y N+ E F + S G+I
Sbjct: 242 FTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEI 301
Query: 98 SLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
S +Q LDYE Y V A D + SA V ++V +VND P E+ L +
Sbjct: 302 STLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAP-------EVILTSLTS 354
Query: 157 A---DLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMF----SINDSGH-ISIVDLSALN 208
+ D PG+VI DGD G+ ++ P F S+++ H ++ DL
Sbjct: 355 SISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREE 414
Query: 209 TSTIQLVVVATDTGNPP 225
TS + + D G PP
Sbjct: 415 TSDYNITLTVMDHGTPP 431
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 48/285 (16%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPR---DLRVKYWLSNDYGERFSISR-------Q 94
F + YS S EN P + +VT + P + RV Y L+ D + +S
Sbjct: 452 FPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDT 511
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ DYE + V A+D+ ++++ ++++ V++ ND P YP L
Sbjct: 512 GVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPA----L 567
Query: 152 P-----HIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHI- 199
P + LA + PG ++ KV A D D G LS L+ +F++ +G +
Sbjct: 568 PTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTGEVR 627
Query: 200 ---SIVDLSALNTSTIQLVVVATDTGNPPRQA----SVPAIMHFPEAIVQQASSKLNSGT 252
+++D AL S LVV D G PP A +V P+ + S K
Sbjct: 628 TARALLDRDALKQS---LVVAVEDHGQPPLSATFTVTVAVADRIPDILADLGSIKTPIDP 684
Query: 253 SSTVLII------LGVVLIVLGFVIILLILYI---HKNKHTKNNG 288
L + V + L FVI+LL+L + HK++ + G
Sbjct: 685 EDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEG 729
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E Y T+ D ++T + + + V +VND P F Y + +
Sbjct: 410 LDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYS-----TSVTEN 464
Query: 160 TP-GSVIGKVEAADGDKGD--RVTLSLR------GPYEKMFSIN-DSGHI-SIVDLSALN 208
P G I V A D D GD RVT SL P SIN D+G + ++
Sbjct: 465 NPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQ 524
Query: 209 TSTIQLVVVATDTGNPPRQASV 230
+QL V A+D+GNPP ++V
Sbjct: 525 LRDLQLWVTASDSGNPPLSSNV 546
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 96 DISLMQCLDYETEDSYRFTVYA---TDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
++ L Q LD E E + + A D +++ + + ++V++ ND P F +Y + +P
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 153 -HIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKM---FSINDS-GHISIVDLS 205
+IP+ G+ + + A D D+G ++T S R EK+ F ++ + G IS +
Sbjct: 253 ENIPV-----GTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSL 307
Query: 206 ALNTSTIQLV-VVATDTG 222
S L+ VVA D G
Sbjct: 308 DYEESRFYLMEVVAQDGG 325
>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus
GN=Celsr1 PE=2 SV=3
Length = 3034
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 22/229 (9%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT--- 69
L V A+ + + R A L V+ + T+ F ++EY ENL V Y +LT+
Sbjct: 336 LKVSAVDHGSPRRSAATYLTVTVSDTNDHSPVFEQSEYRERIRENLEVGYEVLTIRATDG 395
Query: 70 NKPRDLRVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDT-----LMT 123
+ P + ++Y L G F I +R G + +D E Y+ V A D ++
Sbjct: 396 DAPSNANMRYRLLEGAGGVFEIDARSGVVRTRAVVDREEAAEYQLLVEANDQGRNPGPLS 455
Query: 124 TSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS- 182
SATV+I V + ND P+F +Y + +P D+ + + +V+A D D+G +
Sbjct: 456 ASATVHIVVEDENDNYPQFSEKRYVVQVPE----DVAVNTAVLRVQATDRDQGQNAAIHY 511
Query: 183 --LRGPYEKMFSIND-SGHISIV---DLSALNTSTIQLVVVATDTGNPP 225
+ G + F ++ SG + ++ D A+ T++ + A D G PP
Sbjct: 512 SIVSGNLKGQFYLHSLSGSLDVINPLDFEAIREYTLR--IKAQDGGRPP 558
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLR--VKYWLSN-DYGERFSISRQ---GDIS 98
F++ Y + E+ V +LT+ + RD + Y L+ + RF++S Q G I+
Sbjct: 702 FTQPVYELRLNEDAAVGSSVLTLRA-RDRDANSVITYQLTGGNTRNRFALSSQSGGGLIT 760
Query: 99 LMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
L LDY+ E Y V A+D + +A V I+V + N P F+ Y + + D
Sbjct: 761 LALPLDYKQERQYVLAVTASDGTRSHTAQVFINVTDANTHRPVFQSSHYTVSVSE----D 816
Query: 159 LTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHI-SIVDLSALNTSTIQLV 215
G+ I + A D D G+ R+T L P + D+G I ++ +L + + L
Sbjct: 817 RPVGTSIATISATDEDTGENARITYVLEDPVPQFRIDPDTGTIYTMTELDYEDQAAYTLA 876
Query: 216 VVATDTGNP 224
+ A D G P
Sbjct: 877 ITAQDNGIP 885
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 33/168 (19%)
Query: 45 FSKNEYSVSALENLPVNYVLL---TVTTNKPRDLRVKYWL-------------------- 81
F + + + LEN+P+ + +L V + + R++Y L
Sbjct: 580 FVSSPFQAAVLENVPLGHSVLHIQAVDADAGENARLQYRLVDTASTIVGGSSVDSENPAS 639
Query: 82 SNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVND 137
+ D+ F I + G I++ LD E + Y F V A D M++SA+V+I+V++VND
Sbjct: 640 APDF--PFQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPAMSSSASVSITVLDVND 697
Query: 138 WDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG 185
DP F P YEL L D GS + + A D D +T L G
Sbjct: 698 NDPMFTQPVYELRLNE----DAAVGSSVLTLRARDRDANSVITYQLTG 741
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSISR-QGDISL 99
F K+E + EN PV V+ + N P + ++ Y + + E F + GD+
Sbjct: 1014 FEKDELELFVEENSPVGSVVARIRANDPDEGPNAQIMYQIVEGNVPEVFQLDLLSGDLRA 1073
Query: 100 MQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH--IPLA 157
+ LD+E Y V AT + + ATV+I +++ ND P P +++ + +
Sbjct: 1074 LVELDFEVRRDYMLVVQATSAPLVSRATVHIRLLDQNDNPPEL--PDFQILFNNYVTNKS 1131
Query: 158 DLTPGSVIGKVEAADGDKGD 177
+ P VIG++ A D D D
Sbjct: 1132 NSFPSGVIGRIPAHDPDLSD 1151
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 23/209 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---RVKYWLSNDYGER----FSI-SRQG 95
QF Y VS EN P ++ + + P + R+ Y + + ER F I + G
Sbjct: 259 QFPLPSYQVSVPENEPAGTAVIELRAHDPDEGDAGRLSYQMEALFDERSNGYFLIDAATG 318
Query: 96 DISLMQCLDYETEDSYRFTVYATD--TLMTTSAT-VNISVVNVNDWDPRFRYPQYELFLP 152
++ + LD ET+D++ V A D + ++AT + ++V + ND P F +Y +
Sbjct: 319 AVTTARSLDRETKDTHVLKVSAVDHGSPRRSAATYLTVTVSDTNDHSPVFEQSEYRERI- 377
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSLR--GPYEKMFSINDSGHI----SIVDLSA 206
+L G + + A DGD + R +F I+ + ++VD
Sbjct: 378 ---RENLEVGYEVLTIRATDGDAPSNANMRYRLLEGAGGVFEIDARSGVVRTRAVVDRE- 433
Query: 207 LNTSTIQLVVVATDTGNPPRQASVPAIMH 235
+ QL+V A D G P S A +H
Sbjct: 434 -EAAEYQLLVEANDQGRNPGPLSASATVH 461
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 33/186 (17%)
Query: 18 IQYDNQDRYALATL-----IVSKAGTSLREL----------QFSKNEYSVSALENLPVNY 62
+ Y++Q Y LA I K+ T+ E+ +F ++ Y S E+ P +
Sbjct: 865 LDYEDQAAYTLAITAQDNGIPQKSDTTSLEILILDANDNAPRFLRDFYQGSVFEDAPPST 924
Query: 63 VLLTVTTNKPRD------LRVKYWLSNDYGERFSIS-RQGDISLMQCLDYETEDSYRFTV 115
+L V+ RD L + +D F I G I + LD E Y
Sbjct: 925 SVLQVSATD-RDSGPNGRLLYTFQGGDDGDGDFYIEPTSGVIRTQRRLDRENVAVYNLWA 983
Query: 116 YATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKVEA 170
A D ++ S + +SV+++ND P F + ELF + + +P GSV+ ++ A
Sbjct: 984 LAVDRGSPNPLSASVGIQVSVLDINDNPPVFEKDELELF-----VEENSPVGSVVARIRA 1038
Query: 171 ADGDKG 176
D D+G
Sbjct: 1039 NDPDEG 1044
>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus
GN=Celsr2 PE=1 SV=2
Length = 2920
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Query: 25 RYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL 81
R ALATL + T+ + F + EY S ENL V Y +LTV + P + + Y L
Sbjct: 269 RSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRL 328
Query: 82 SNDYGER----FSIS-RQGDISLMQCLDYETEDSYRFTVYATDT-----LMTTSATVNIS 131
G+ F I R G I +D E +SY+ TV A+D +++A V +S
Sbjct: 329 LEGAGDSPSDAFEIDPRSGVIRTRGPVDREEVESYKLTVEASDQGRDPGPRSSTAIVFLS 388
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYE 188
V + ND P+F +Y + + D+TPG+ + +V A+D DKG + + G
Sbjct: 389 VEDDNDNAPQFSEKRYVVQV----REDVTPGAPVLRVTASDRDKGSNALVHYSIMSGNAR 444
Query: 189 KMFSIN-DSGHISIVD-LSALNTSTIQLVVVATDTGNPP 225
F ++ +G + +V L T L + A D G PP
Sbjct: 445 GQFYLDAQTGALDVVSPLDYETTKEYTLRIRAQDGGRPP 483
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSIS---RQGDIS 98
F + + LE++P+ Y++L V + + R++Y L+ G F + G IS
Sbjct: 506 FVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYSLAG-VGHDFPFTINNGTGWIS 564
Query: 99 LMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP 155
+ LD E D Y F V A D +T SA+V++++++VND +P F P+Y + L
Sbjct: 565 VAAELDREEVDFYSFGVEARDHGTPALTASASVSVTILDVNDNNPTFTQPEYTVRLNE-- 622
Query: 156 LADLTPGSVIGKVEAADGDKGDRVTLSL-RGPYEKMFSINDSGHISIVDLS 205
D G+ + V A D +T + G FSI +V L+
Sbjct: 623 --DAAVGTSVVTVSAVDRHAHSVITYQITSGNTRNRFSITSQSGGGLVSLA 671
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWL-SNDYGERFSIS-RQGDISL 99
F ++E+ V EN P+ + VT P + ++ Y + + E F + G+++
Sbjct: 922 FEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGELTA 981
Query: 100 MQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH--IPLA 157
+ LDYE Y + AT + + ATV++ +++ ND P +E+ + +
Sbjct: 982 LVDLDYEDRPEYVLVIQATSAPLVSRATVHVRLLDRNDNPPVLG--NFEILFNNYVTNRS 1039
Query: 158 DLTPGSVIGKVEAADGDKGDRVTLSL-RG 185
PG IG+V A D D D +T S RG
Sbjct: 1040 SSFPGGAIGRVPAHDPDISDSLTYSFERG 1068
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT-NKPRDLRVKYWL-SNDYGERFSISRQ---GDISL 99
F++ EY+V E+ V ++TV+ ++ + Y + S + RFSI+ Q G +SL
Sbjct: 611 FTQPEYTVRLNEDAAVGTSVVTVSAVDRHAHSVITYQITSGNTRNRFSITSQSGGGLVSL 670
Query: 100 MQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LDY+ E Y V A+D +A + ++V + N P F+ Y + D
Sbjct: 671 ALPLDYKLERQYVLAVTASDGTRQDTAQIVVNVTDANTHRPVFQSSHYTVNGNE----DR 726
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISI-VDLSALNTSTIQLVV 216
G+ + + A D D G+ R+T + + D+G ++ +L + + L +
Sbjct: 727 PAGTTVVLISATDEDTGENARITYFMEDSIPQFRIDGDTGAVTTQAELDYEDQVSYTLAI 786
Query: 217 VATDTGNP 224
A D G P
Sbjct: 787 TARDNGIP 794
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 16/223 (7%)
Query: 15 VRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVN--YVLLTVT-TNK 71
V A+ + R A ++V+ + F + Y+V+ E+ P VL++ T +
Sbjct: 683 VLAVTASDGTRQDTAQIVVNVTDANTHRPVFQSSHYTVNGNEDRPAGTTVVLISATDEDT 742
Query: 72 PRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLM---TTSATV 128
+ R+ Y++ + + G ++ LDYE + SY + A D + + + +
Sbjct: 743 GENARITYFMEDSIPQFRIDGDTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYL 802
Query: 129 NISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRV--TLSLR 184
I V +VND P+F Y+ + D+ P + + ++ A D D G RV T
Sbjct: 803 EILVNDVNDNAPQFLRDSYQGTV----YEDVPPFTSVLQILATDRDSGLNGRVFYTFQGG 858
Query: 185 GPYEKMFSINDSGHI--SIVDLSALNTSTIQLVVVATDTGNPP 225
+ F + + I ++ L N + L A D G PP
Sbjct: 859 DDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPP 901
>sp|Q99PF4|CAD23_MOUSE Cadherin-23 OS=Mus musculus GN=Cdh23 PE=1 SV=2
Length = 3354
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDYGERFSIS-RQGDISLM 100
F + Y + E++ V V+L VT ++Y L + G +F+I+ GDIS++
Sbjct: 2402 FDQPSYQEAVFEDIAVGTVILRVTATDADSGNFALIEYSLVDGEG-KFAINPNTGDISVL 2460
Query: 101 QCLDYETEDSYRFTVYATDT-------LMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
LD E +D Y T A D S V I V++VND P+F PQ+ +
Sbjct: 2461 SSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIRVLDVNDCRPQFSKPQFSTSV-- 2518
Query: 154 IPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIVDLSALNTS 210
+ G+ + + A D D+G ++T SL GP + FS++ DSG ++ +
Sbjct: 2519 --YENEPAGTSVITMLATDQDEGSNSQLTYSLEGPGMEAFSVDMDSGLVT-TQRPLQSYE 2575
Query: 211 TIQLVVVATDTGNPP 225
L VVATD G PP
Sbjct: 2576 RFNLTVVATDGGEPP 2590
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 42/217 (19%)
Query: 45 FSKNEYSVSALENLPVNY-VLLTVTTNKPRDLRVKYWLSNDYGE-----------RFSI- 91
FSK Y VS LEN+ VL T+ R S +YG+ +F I
Sbjct: 671 FSKPAYFVSVLENIMAGATVLFLNATDLDR--------SREYGQESIIYSLEGSSQFRIN 722
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATD-----TLMTTSATVNISVVNVNDWDPRFRYPQ 146
+R G+I+ LD ET+ Y V A D T ATVN++++++ND P ++
Sbjct: 723 ARSGEITTTSLLDRETKSEYILIVRAVDGGVGHNQKTGIATVNVTLLDINDNHPTWKDAP 782
Query: 147 YELFLPHIPLADLT-PGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSIND-SGHISI-- 201
Y +I L ++T P S + V A D D G+ TL P K +S+N +G I
Sbjct: 783 Y-----YINLVEMTPPDSDVTTVVAVDPDLGENGTLVYSIHPPNKFYSLNSTTGKIRTTH 837
Query: 202 VDLSALNTSTIQ------LVVVATDTGNPPRQASVPA 232
V L N ++ ++V TD G PP +A+ A
Sbjct: 838 VMLDRENPDPVEAELMRKIIVSVTDCGRPPLKATSSA 874
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 45 FSKNEYSVSALENLPVNYVLLTV--TTNKPRDL-RVKYWLSNDYGERFSISRQ-GDISLM 100
FS+ Y+VS EN+ V +LTV T N V Y+ S+D +RFS+ + G I L+
Sbjct: 460 FSQPLYNVSLYENITVGTSVLTVLATDNDVGTFGEVNYFFSDD-PDRFSLDKDTGLIMLI 518
Query: 101 QCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFL----PHIP 155
LDYE + TV A D T+ V I+V++VND P F+ Y L P +
Sbjct: 519 ARLDYELIQRFTLTVIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSV- 577
Query: 156 LADLTPGSVIGKVEAADGDKGDR-------VTLSLRGPYEKMFSINDSGHISI---VDLS 205
+ + ++ A D D V S G Y + G IS+ +D
Sbjct: 578 -------TQLVRLRATDEDSPPNNLITYSIVNASAFGSYFDISIYEGYGVISVSRPLDYE 630
Query: 206 ALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
+ I L V+A D GNPP ++VP +
Sbjct: 631 QIPNGLIYLTVMAKDAGNPPLYSTVPVTIE 660
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVT-TNKPRDL--RVKYWLSNDYGERFSIS------RQG 95
FS Y+V LEN P + +L VT T++ L + Y + +RF I R G
Sbjct: 2069 FSPPTYTVHLLENCPPGFSVLQVTATDEDSGLNGELVYRIEAGAQDRFLIHPVTGVIRVG 2128
Query: 96 DISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
+ + +D E ++SYR TV ATD ++ +A V I + ++ND P F P + +
Sbjct: 2129 NAT----IDREEQESYRLTVVATDRGTVPLSGTAIVTILIDDINDSRPEFLNPIQTVSV- 2183
Query: 153 HIPLADLTPGSVIGKVEAADGD 174
L PG++I V A D D
Sbjct: 2184 ---LESAEPGTIIANVTAIDLD 2202
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 25/204 (12%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDL-----RVKYWLSNDYGERFSISR-QGD 96
+QFS Y +ENL + ++ V +L R + S F I G
Sbjct: 1311 VQFSNASYEAVIMENLALGTEIVRVQAYSIDNLNQITYRFDAYTSAQAKALFKIDAITGV 1370
Query: 97 ISLMQCLDYETEDSYRFTVYATDTLMTTSATVN--ISVVNVNDWDPRFRY-PQYELFLPH 153
I++ +D E D Y TV A D +TV I+V++ ND PRF + + +P
Sbjct: 1371 ITVKGLVDREKGDFYTLTVVADDGGPKVDSTVKVYITVLDENDNSPRFDFTSDSAISVPE 1430
Query: 154 IPLADLTPGSVIGKVEAADGDKGD--RVTLSLR-----GPYEKMFSINDSGHISI---VD 203
D G + V+A D D G +V SL G +E + S + G + + +D
Sbjct: 1431 ----DCPVGQRVATVKARDPDAGSNGQVVFSLASGNIAGAFEIITSNDSIGEVFVAKPLD 1486
Query: 204 LSALNTSTIQLVVVATDTGNPPRQ 227
L+ ++ VVA+D G PPR+
Sbjct: 1487 REELDHYILK--VVASDRGTPPRK 1508
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 26/199 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVL--LTVTTNKPRDLRV----KYWLSNDYGERF-----SIS 92
+F+ +EYSV+ E V + L +K DL + + +L + F S+
Sbjct: 347 EFNSSEYSVAITELAQVGFALPLFIQVVDKDEDLGLNSMFEVYLVGNNSHHFIISPTSVQ 406
Query: 93 RQGDISLMQC--LDYETEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYE 148
+ DI + LDYET D Y F ++A +++ A V I+++N ND P F P Y
Sbjct: 407 GKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYN 466
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISIVDLSA 206
+ L ++T G+ + V A D D G V ++ D+G I ++ +
Sbjct: 467 VSL----YENITVGTSVLTVLATDNDVGTFGEVNYFFSDDPDRFSLDKDTGLIMLI--AR 520
Query: 207 LNTSTIQ---LVVVATDTG 222
L+ IQ L V+A D G
Sbjct: 521 LDYELIQRFTLTVIARDGG 539
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 29/137 (21%)
Query: 65 LTVTTNKPRDLRVKYWLS---NDYG---------------ERFSIS-RQGDISLMQCLDY 105
++V+ + PR+ RV WL+ ND G +FS+ R + + LD
Sbjct: 1002 VSVSEDVPREFRV-VWLNCTDNDVGLNAELSYFITAGNVDGKFSVGYRDAVVRTVVGLDR 1060
Query: 106 ETEDSYRFTVYATDT-----LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
ET +Y + A D T +ATV ++V++VND P F YE +P D+
Sbjct: 1061 ETTAAYTLVLEAIDNGPVGKRRTGTATVFVTVLDVNDNRPIFLQSSYEASVPE----DIP 1116
Query: 161 PGSVIGKVEAADGDKGD 177
G I +++A D D+G+
Sbjct: 1117 EGHSIVQLKATDADEGE 1133
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 15/124 (12%)
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSAT---VNISVVNVNDWDPRFRYPQYE 148
S G + + +DYE FTV A+D A V + +V++ND +P F P Y+
Sbjct: 2349 SSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLEIVDINDNNPIFDQPSYQ 2408
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDL 204
+ D+ G+VI +V A D D G+ + + G E F+IN ++G IS+ L
Sbjct: 2409 EAV----FEDIAVGTVILRVTATDADSGNFALIEYSLVDG--EGKFAINPNTGDISV--L 2460
Query: 205 SALN 208
S+L+
Sbjct: 2461 SSLD 2464
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 25/232 (10%)
Query: 12 TLVVRAIQYDN----QDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTV 67
TLV+ AI DN + R AT+ V+ + F ++ Y S E++P + ++ +
Sbjct: 1067 TLVLEAI--DNGPVGKRRTGTATVFVTVLDVNDNRPIFLQSSYEASVPEDIPEGHSIVQL 1124
Query: 68 -TTNKPRDLRVKYW---LSNDYGERFSISRQGDISLMQC---LDYETEDSYRFTVYATD- 119
T+ + W L ++G F I G LM+ LD E S+ V A +
Sbjct: 1125 KATDADEGEFGRVWYRILHGNHGNNFRI-HVGSGLLMRGPRPLDRERNSSHVLMVEAYNH 1183
Query: 120 --TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKVEAADGDKG 176
M +S V + V +VND P F QY + L + G+ + V A D D G
Sbjct: 1184 DLGPMRSSVRVIVYVEDVNDEAPVFTQQQYN----RLGLRETAGIGTSVIVVRATDKDTG 1239
Query: 177 DRVTLSLR--GPYEKMFSINDS-GHISIVDLSALNTSTIQLVVVATDTGNPP 225
D ++ R E F I++S G I VD T T L+ V+ G PP
Sbjct: 1240 DGGLVNYRILSGAEGKFEIDESTGLIVTVDYLDYETKTSYLMNVSATDGAPP 1291
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 30/217 (13%)
Query: 25 RYALAT--------LIVSKAGTSLRELQFSKNEYSVSAL---ENLPVNYVLLTVTTNKPR 73
RY+L T ++V + + L F N + + L E+ PV +VT R
Sbjct: 2 RYSLVTCYAVLWLLMLVPGSWGQVNRLPFFTNHFFDTYLLISEDTPVGS---SVTQLLAR 58
Query: 74 DLR---VKYWLSNDYGERFSISR--QGDISLMQCLDYETEDSYRFTVYATDTLMTTSATV 128
D+ + + +S + RF G + L Q LD ET+ + +D + V
Sbjct: 59 DMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKV 118
Query: 129 NISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKVEAADGD--KGDRVTLSLRG 185
NI V +VND P F Y + +P + TP G+ I V A D D G V S +
Sbjct: 119 NIQVGDVNDNAPTFHNQPYSVRIP-----ENTPVGTPIFIVNATDPDLGAGGSVLYSFQP 173
Query: 186 PYEKMFSINDSGHISIV--DLSALNTSTIQLVVVATD 220
P F+I+ + I V +L T QL V ATD
Sbjct: 174 P-SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 209
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 118/285 (41%), Gaps = 59/285 (20%)
Query: 4 EDDFL-QPITLVVRA----IQYDNQDRYALATLIVSK-----AGTSL-----RELQFSKN 48
+D FL P+T V+R I + Q+ Y L + + +GT++ ++ S+
Sbjct: 2113 QDRFLIHPVTGVIRVGNATIDREEQESYRLTVVATDRGTVPLSGTAIVTILIDDINDSRP 2172
Query: 49 EY-----SVSALENLPVNYVLLTVTT-----NKPRDLRVKYWLSNDYGER--------FS 90
E+ +VS LE+ ++ VT N + + ++ D +R F+
Sbjct: 2173 EFLNPIQTVSVLESAEPGTIIANVTAIDLDLNPKLEYHIISIVAKDDTDRLVPDQEDAFA 2232
Query: 91 IS-RQGDISLMQCLDYETEDSYRFTVYATD--------TLMTTSATVNISVVNVNDWDPR 141
++ G + + L+ E +Y T+ D ++ +A + +++++VND P+
Sbjct: 2233 VNINTGSVMVKSPLNRELVATYEVTLSVIDNASDLPEHSVSVPNAKLTVNILDVNDNTPQ 2292
Query: 142 FRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISI 201
F+ P + L TPG+ + V A D DKG ++ + + G++ +
Sbjct: 2293 FK-PFGITYYTERVLEGATPGTTLIAVAAVDPDKGLNGLITY-----TLLDLTPPGYVQL 2346
Query: 202 VDLSA-----------LNTSTIQLVVVATDTGNPPRQASVPAIMH 235
D SA + V A+D G+PPR A +P +
Sbjct: 2347 EDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLE 2391
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 123 TTSATVNISVVNVNDWDPRFRYPQYELFLPHIP-LADLTPGSV-IGKVEAADGDKGDRVT 180
T+SATV ++++++ND DP FR LP + + + TP V + +V A D D+G
Sbjct: 871 TSSATVFVNLLDLNDNDPTFRN------LPFVAEILEGTPAGVSVYQVVAIDLDEGLNGL 924
Query: 181 LSLR---GPYEKMFSINDSGHI--SIVDLSALNTSTIQLVVVATDTGNPPRQAS 229
+S R G F IN + + + +L + QL VVA+D G P + ++
Sbjct: 925 VSYRMQVGMPRMDFVINSTSGVVTTTAELDRERIAEYQLRVVASDAGTPTKSST 978
>sp|Q99PJ1|PCD15_MOUSE Protocadherin-15 OS=Mus musculus GN=Pcdh15 PE=1 SV=2
Length = 1943
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 14/195 (7%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER-FSISRQ-GDISLMQ 101
+F + YS+ E + + +LL + + Y + N +R F++S G +SL +
Sbjct: 620 RFPQLMYSLEVSEAMRIGAILLNLQATDREGDPITYAIENGDPQRVFNLSETTGILSLGK 679
Query: 102 CLDYETEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYELFLP-HIPLAD 158
LD E+ D Y V A+D T++ATVNI V +VND P F + +LP ++ + +
Sbjct: 680 ALDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNAPVF-----DPYLPRNLSVVE 734
Query: 159 LTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHI-SIVDLSALNTSTIQLV 215
+ +G+V A D D G +V SL G + +F I +G I + V L+ +LV
Sbjct: 735 EEANAFVGQVRATDPDAGINGQVHYSL-GNFNNLFRITSNGSIYTAVKLNREARDHYELV 793
Query: 216 VVATDTGNPPRQASV 230
VVATD PR +++
Sbjct: 794 VVATDGAVHPRHSTL 808
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 35/245 (14%)
Query: 6 DFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVL- 64
DF Q LV++A Q + A A+L + + + F+ Y LE+ PV +
Sbjct: 361 DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS 420
Query: 65 --LTVTT-----------NKPRDLRVKYWLSNDYGERFSISRQG---DISLMQCLDYETE 108
L +TT +D + +L NDY F+++ G ++L+Q +D E +
Sbjct: 421 ESLNLTTPLRIVALDKDIEDTKDPELHLFL-NDYTSVFTVTPTGITRYLTLLQPVDREEQ 479
Query: 109 DSYRFTVYATDTLMTTS-ATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
+Y F + A D + + VNI V++ ND P F Y++++ D++PG + +
Sbjct: 480 QTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV----YTDMSPGDSVIQ 535
Query: 168 VEAADGDKGDRVTLSLRGPYEKM------FSIND-SGHISIV-DLSALNTSTIQLVVVAT 219
+ A D D+G +S YE + F IN +G +SI + + T L V A+
Sbjct: 536 LTAVDADEGSNGEIS----YEILVGGKGDFVINKTTGLVSIAPGVELIVGQTYALTVQAS 591
Query: 220 DTGNP 224
D P
Sbjct: 592 DNAPP 596
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
LVV A R++ TL + F+ + Y+V ENLP L + K
Sbjct: 792 LVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVVEENLPAGTSFLQIEA-KD 850
Query: 73 RDL--RVKYWL-SNDYGERFSISR-QGDISLMQCLDYET----EDSYRFTVYATD---TL 121
DL V Y + S + F++ G++SL++ LDYE E S F V A D T+
Sbjct: 851 VDLGANVSYRIRSPEVKHLFALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTM 910
Query: 122 MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK----GD 177
ATV + V ++ND+ P F Y+ + D G+ I V A D D
Sbjct: 911 PPGIATVTVIVKDMNDYPPVFSKRIYKGMV----APDAVKGTPITTVYAEDADPPGMPAS 966
Query: 178 RVTL---SLRGPY-EKMFSIN-DSGHI-SIVDLSALNTSTIQLVVVATDTGNP 224
RV ++ PY +F + DSG + + V+L+ T+ +LVVVA D G P
Sbjct: 967 RVRYRVDDVQFPYPASIFDVEEDSGRVVTRVNLNEEPTTIFKLVVVAFDDGEP 1019
>sp|Q9H251|CAD23_HUMAN Cadherin-23 OS=Homo sapiens GN=CDH23 PE=1 SV=2
Length = 3354
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDYGERFSIS-RQGDISLM 100
F + Y + E++PV ++LTVT ++Y L D +F+I+ GDI ++
Sbjct: 2402 FDQPSYQEAVFEDVPVGTIILTVTATDADSGNFALIEYSLG-DGESKFAINPTTGDIYVL 2460
Query: 101 QCLDYETEDSYRFTVYATDT-------LMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
LD E +D Y T A D S V I V++VND P+F PQ+ +
Sbjct: 2461 SSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIQVLDVNDCRPQFSKPQFSTSV-- 2518
Query: 154 IPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIN-DSGHISIVDLSALNTS 210
+ G+ + + A D D+G +T SL GP + F ++ DSG ++ +
Sbjct: 2519 --YENEPAGTSVITMMATDQDEGPNGELTYSLEGPGVEAFHVDMDSGLVT-TQRPLQSYE 2575
Query: 211 TIQLVVVATDTGNPP 225
L VVATD G PP
Sbjct: 2576 KFSLTVVATDGGEPP 2590
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 45 FSKNEYSVSALENLPVNYVLLTV--TTNKPRDL-RVKYWLSNDYGERFSISRQ-GDISLM 100
FS+ Y++S EN+ V +LTV T N V Y+ S+D +RFS+ + G I L+
Sbjct: 460 FSQPLYNISLYENVTVGTSVLTVLATDNDAGTFGEVSYFFSDD-PDRFSLDKDTGLIMLI 518
Query: 101 QCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFL----PHIP 155
LDYE + T+ A D T+ V I+V++VND P F+ Y L P +
Sbjct: 519 ARLDYELIQRFTLTIIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSV- 577
Query: 156 LADLTPGSVIGKVEAADGDK--GDRVTLSL-----RGPYEKMFSINDSGHISI---VDLS 205
+ + ++ A D D +++T S+ G Y + G IS+ +D
Sbjct: 578 -------TQLVRLRATDEDSPPNNQITYSIVSASAFGSYFDISLYEGYGVISVSRPLDYE 630
Query: 206 ALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
++ I L V+A D GNPP ++VP +
Sbjct: 631 QISNGLIYLTVMAMDAGNPPLNSTVPVTIE 660
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 44/218 (20%)
Query: 45 FSKNEYSVSALENLPVNY-VLLTVTTNKPRDLRVKYWLSNDYGE-----------RFSI- 91
FSK Y VS +EN+ VL T+ R S +YG+ +F I
Sbjct: 671 FSKPAYFVSVVENIMAGATVLFLNATDLDR--------SREYGQESIIYSLEGSTQFRIN 722
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATD-----TLMTTSATVNISVVNVNDWDPRFRYPQ 146
+R G+I+ LD ET+ Y V A D T ATVNI+++++ND P ++
Sbjct: 723 ARSGEITTTSLLDRETKSEYILIVRAVDGGVGHNQKTGIATVNITLLDINDNHPTWKDAP 782
Query: 147 YELFLPHIPLADLT-PGSVIGKVEAADGDKGDRVTL--SLRGPYEKMFSIND-SGHI--- 199
Y +I L ++T P S + V A D D G+ TL S++ P K +S+N +G I
Sbjct: 783 Y-----YINLVEMTPPDSDVTTVVAVDPDLGENGTLVYSIQPP-NKFYSLNSTTGKIRTT 836
Query: 200 -SIVDLSALNTSTIQL----VVVATDTGNPPRQASVPA 232
+++D + +L VV TD G PP +A+ A
Sbjct: 837 HAMLDRENPDPHEAELMRKIVVSVTDCGRPPLKATSSA 874
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDL-----RVKYWLSNDYGERFSISR-QGD 96
+QFS Y + LENL + ++ V +L R + S F I G
Sbjct: 1311 VQFSNASYEAAILENLALGTEIVRVQAYSIDNLNQITYRFNAYTSTQAKALFKIDAITGV 1370
Query: 97 ISLMQCLDYETEDSYRFTVYATDTLMTTSATVN--ISVVNVNDWDPRFRYPQYELFLPHI 154
I++ +D E D Y TV A D +TV I+V++ ND PRF + I
Sbjct: 1371 ITVQGLVDREKGDFYTLTVVADDGGPKVDSTVKVYITVLDENDNSPRFDFTSDSAV--SI 1428
Query: 155 PLADLTPGSVIGKVEAADGDKGD--RVTLSLR-----GPYEKMFSINDS-GHISI---VD 203
P D G + V+A D D G +V SL G +E + + NDS G + + +D
Sbjct: 1429 P-EDCPVGQRVATVKAWDPDAGSNGQVVFSLASGNIAGAFE-IVTTNDSIGEVFVARPLD 1486
Query: 204 LSALNTSTIQLVVVATDTGNPPRQ 227
L+ +Q VVA+D G PPR+
Sbjct: 1487 REELDHYILQ--VVASDRGTPPRK 1508
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 36/215 (16%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVT-TNKPRDL--RVKYWLSNDYGERFSIS------RQG 95
FS +V LEN P + +L VT T++ L + Y + +RF I R G
Sbjct: 2069 FSPATLTVHLLENCPPGFSVLQVTATDEDSGLNGELVYRIEAGAQDRFLIHLVTGVIRVG 2128
Query: 96 DISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
+ ++ D E ++SYR TV ATD ++ +A V I + ++ND P F P + +
Sbjct: 2129 NATI----DREEQESYRLTVVATDRGTVPLSGTAIVTILIDDINDSRPEFLNPIQTVSV- 2183
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG------------PYEKMFSIN-DSGHI 199
L PG+VI + A D D ++ + G E F++N ++G +
Sbjct: 2184 ---LESAEPGTVIANITAIDHDLNPKLEYHIVGIVAKDDTDRLVPNQEDAFAVNINTGSV 2240
Query: 200 SI---VDLSALNTSTIQLVVVATDTGNPPRQASVP 231
+ ++ + T + L V+ + P R SVP
Sbjct: 2241 MVKSPMNRELVATYEVTLSVIDNASDLPERSVSVP 2275
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVL--LTVTTNKPRDLRV----KYWLSNDYGERF-----SIS 92
+F+ +EYSV+ E V + L +K +L + + +L + F S+
Sbjct: 347 EFNSSEYSVAITELAQVGFALPLFIQVVDKDENLGLNSMFEVYLVGNNSHHFIISPTSVQ 406
Query: 93 RQGDISLMQC--LDYETEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYE 148
+ DI + LDYET D Y F ++A +++ A V I+++N ND P F P Y
Sbjct: 407 GKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYN 466
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISIVDLSA 206
+ L ++T G+ + V A D D G V+ ++ D+G I ++ +
Sbjct: 467 ISL----YENVTVGTSVLTVLATDNDAGTFGEVSYFFSDDPDRFSLDKDTGLIMLI--AR 520
Query: 207 LNTSTIQ---LVVVATDTG 222
L+ IQ L ++A D G
Sbjct: 521 LDYELIQRFTLTIIARDGG 539
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 45/235 (19%)
Query: 65 LTVTTNKPRDLRVKYWLS---NDYG---------------ERFSIS-RQGDISLMQCLDY 105
++V+ + PR+ RV WL+ ND G +FS+ R + + LD
Sbjct: 1002 VSVSEDVPREFRV-VWLNCTDNDVGLNAELSYFITGGNVDGKFSVGYRDAVVRTVVGLDR 1060
Query: 106 ETEDSYRFTVYATDT-----LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
ET +Y + A D T +ATV ++V++VND P F YE +P D+
Sbjct: 1061 ETTAAYMLILEAIDNGPVGKRHTGTATVFVTVLDVNDNRPIFLQSSYEASVPE----DIP 1116
Query: 161 PGSVIGKVEAADGDKGD--RVTLS-LRGPYEKMFSINDSGHISIVDLSALN---TSTIQL 214
G I +++A D D+G+ RV L G + F I+ S + + L+ S+ L
Sbjct: 1117 EGHSILQLKATDADEGEFGRVWYRILHGNHGNNFRIHVSNGLLMRGPRPLDRERNSSHVL 1176
Query: 215 VVVATDTGNPPRQASVPAIMHFPE------AIVQQASSKLN----SGTSSTVLII 259
+V A + P ++SV I++ + QQ S+L +G ++V+++
Sbjct: 1177 IVEAYNHDLGPMRSSVRVIVYVEDINDEAPVFTQQQYSRLGLRETAGIGTSVIVV 1231
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSAT---VNISVVNVNDWDPRFRYPQYE 148
S G + + +DYE FTV A+D A V + +V++ND +P F P Y+
Sbjct: 2349 SSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLEIVDINDNNPIFDQPSYQ 2408
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSIN 194
+ D+ G++I V A D D G+ + G E F+IN
Sbjct: 2409 EAV----FEDVPVGTIILTVTATDADSGNFALIEYSLGDGESKFAIN 2451
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 123 TTSATVNISVVNVNDWDPRFR-YPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTL 181
T+SATV ++++++ND DP F+ P L IP G I +V A D D+G +
Sbjct: 871 TSSATVFVNLLDLNDNDPTFQNLPFVAEVLEGIP-----AGVSIYQVVAIDLDEGLNGLV 925
Query: 182 SLRGP--YEKM-FSINDSGHISI--VDLSALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S R P +M F IN S + + +L + QL VVA+D G P + ++ +H
Sbjct: 926 SYRMPVGMPRMDFLINSSSGVVVTTTELDRERIAEYQLRVVASDAGTPTKSSTSTLTIH 984
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 16/204 (7%)
Query: 27 ALATLIVSKAGTSLRELQFSKNEYSVSAL---ENLPVNYVLLTVTTNKPRDLRVKYWLSN 83
A +++S + L F N + + L E+ PV + + + + + +S
Sbjct: 12 AWLLVLISGCWGQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLAQDMDNDPLVFGVSG 71
Query: 84 DYGERFSISR--QGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPR 141
+ RF G + L Q LD ET+ + +D + VNI V +VND P
Sbjct: 72 EEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPT 131
Query: 142 FRYPQYELFLPHIPLADLTP-GSVIGKVEAADGD--KGDRVTLSLRGPYEKMFSINDSGH 198
F Y + +P + TP G+ I V A D D G V S + P + F+I+ +
Sbjct: 132 FHNQPYSVRIP-----ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP-SQFFAIDSARG 185
Query: 199 ISIV--DLSALNTSTIQLVVVATD 220
I V +L T QL V ATD
Sbjct: 186 IVTVIRELDYETTQAYQLTVNATD 209
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 125 SATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLS 182
+A + ++V++VND P+F+ ++ I L TPG+ + V A D DKG VT +
Sbjct: 2276 NAKLTVNVLDVNDNTPQFKPFGITYYMERI-LEGATPGTTLIAVAAVDPDKGLNGLVTYT 2334
Query: 183 LRGPYEKMFSINDSGHISIVDLSA-----------LNTSTIQLVVVATDTGNPPRQASVP 231
L + G++ + D SA + V A+D G+PPR A +P
Sbjct: 2335 L-------LDLVPPGYVQLEDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIP 2387
Query: 232 AIMH 235
+
Sbjct: 2388 VYLE 2391
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 45 FSKNEYSVSALENLP--VNYVLLTVT-TNKPRDLRVKYWL--SNDYGERFSIS---RQGD 96
F K+ Y + EN P V L T + P + ++ Y + ++ +G F IS G
Sbjct: 561 FQKDAYVGALRENEPSVTQLVRLRATDEDSPPNNQITYSIVSASAFGSYFDISLYEGYGV 620
Query: 97 ISLMQCLDYE--TEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
IS+ + LDYE + TV A D + ++ V I V + ND P F P Y + +
Sbjct: 621 ISVSRPLDYEQISNGLIYLTVMAMDAGNPPLNSTVPVTIEVFDENDNPPTFSKPAYFVSV 680
Query: 152 PHIPLADLTPGSVIGKVEAADGDKG-----DRVTLSLRGPYEKMFSIN-DSGHISIVDLS 205
+ ++ G+ + + A D D+ + + SL G F IN SG I+ L
Sbjct: 681 ----VENIMAGATVLFLNATDLDRSREYGQESIIYSLEG--STQFRINARSGEITTTSLL 734
Query: 206 ALNT-STIQLVVVATDTG 222
T S L+V A D G
Sbjct: 735 DRETKSEYILIVRAVDGG 752
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 77 VKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
V Y + + +F I G I + LDYET+ SY V ATD +V I++
Sbjct: 1244 VNYRILSGAEGKFEIDESTGLIITVNYLDYETKTSYMMNVSATDQAPPFNQGFCSVYITL 1303
Query: 133 VNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG----PYE 188
+N D +F YE + L +L G+ I +V+A D +++T +
Sbjct: 1304 LNELDEAVQFSNASYEAAI----LENLALGTEIVRVQAYSIDNLNQITYRFNAYTSTQAK 1359
Query: 189 KMFSIND-SGHISIVDLSALNTSTIQLVVVATDTGNPPRQASV 230
+F I+ +G I++ L + V D G P ++V
Sbjct: 1360 ALFKIDAITGVITVQGLVDREKGDFYTLTVVADDGGPKVDSTV 1402
>sp|Q6V1P9|PCD23_HUMAN Protocadherin-23 OS=Homo sapiens GN=DCHS2 PE=2 SV=1
Length = 2916
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 33/301 (10%)
Query: 11 ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVN--------- 61
TL V+A + + ++ A + VS + QF + +S ENLP++
Sbjct: 2281 FTLTVQASDAEKK-HFSFAVVFVSVLDDNDHAPQFMFSSFSCIVPENLPISSTICSINAL 2339
Query: 62 ------YVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTV 115
Y LT + P + + +S D+ GDI Q LDYE + Y TV
Sbjct: 2340 DFDAGPYGELTYSIVSP--CFLTHGMSYDHDLFLIDPLTGDIHAKQILDYENGNKYCLTV 2397
Query: 116 YATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGD 174
A D T S V + + +++++P F QY LP +IG+VEA+D D
Sbjct: 2398 QAKDKGDATASLVVWVDIEGIDEFEPIFTQDQYFFTLPE----KNKDRQLIGRVEASDAD 2453
Query: 175 KG-DRVTLSLRGPYEKMFSINDS-GHISIVDL-----SALNTS-TIQLVVVATDTGNPPR 226
G D V L G FS+N + G+I ++ S LN T+++ ++A + +
Sbjct: 2454 AGIDGVILYSLGTSSPFFSVNKTNGNIYLIRALPLIKSQLNKEDTLEMKIIAHSPKSDSK 2513
Query: 227 QASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKN 286
AS ++ + + S S ++++ V LI++ +I++++ HK K T N
Sbjct: 2514 FASCTVFVNVSFSSEGTPLAVFASSFSISLVVSFLVFLILICILIVMILR--HKQKDTIN 2571
Query: 287 N 287
N
Sbjct: 2572 N 2572
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 38 TSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLR--VKYWLSN-DYGERFSIS-R 93
T+L +F + +Y+ E++P + + TV +P + + Y +S+ D G +FSI R
Sbjct: 370 TTLAPAEFERPKYTFLVYEDVPEDSPIGTVKAREPLNSSEPIFYRISSGDLGGKFSIHPR 429
Query: 94 QGDISLMQCLDYETEDSYRFTVYAT--DTLMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G I + LD+ET+ TV A +S VNI+V++VND P F E+ +
Sbjct: 430 LGTIRTRKPLDHETQPVVVLTVQAQLGSAPACSSTEVNITVMDVNDNHPAFLRTSDEIRI 489
Query: 152 PHIPLADLTPGSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSINDSGHISIVD--LSAL 207
PG+ + A D D G + S+ P +F+I+ + + ++ L A
Sbjct: 490 SQT----TPPGTALYLARAEDRDSGRNGLIRYSIASPQPGVFAIDRALGVLFLNGSLGAG 545
Query: 208 NTSTIQLVVVATDTGNPPRQA 228
+ L + A D G P+ A
Sbjct: 546 EQRELTLTLRAEDQGVHPQAA 566
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 30/209 (14%)
Query: 56 ENLPVNYVLLTVTTNKP---RDLRVKY-WLSNDYGERFSISRQGDISLMQC-LDYETEDS 110
E++ V ++ +T + P R+ +V Y LS + F + + C LDYE +
Sbjct: 1175 EDVTVGSLVHHITAHDPDEGRNGKVTYSILSGNENMTFMLDESSGLLTTTCPLDYEMKTQ 1234
Query: 111 YRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
+ TV A D +++S T+ ++V++VND P F+ YE + + PG + +
Sbjct: 1235 HILTVLALDDGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEASVKE----NQNPGEFVTR 1290
Query: 168 VEAADGDKGDRVTLSLR---GPYEKMFSIN-DSGHI---SIVDLSALNTSTIQLVVVATD 220
VEA D D G L G ++F IN D+G + +I+D T++++V
Sbjct: 1291 VEALDRDSGVNSKLQFEIMPGASFELFEINSDTGEVVTTTILDREIQEVFTLRVLV---R 1347
Query: 221 TGNPPRQASVPAIM--------HFPEAIV 241
G P +S I+ H PE IV
Sbjct: 1348 DGGFPSLSSTTTILCTVEDENDHAPEFIV 1376
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 86 GERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRY 144
G +F+I + G + L++ LD+E Y + +D++ T + + V++VND P F
Sbjct: 1935 GTKFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTEGALVVRVLDVNDNPPVFSQ 1994
Query: 145 PQYELFLPH-IPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSIN-DSGHI-SI 201
Y++ +P IP+ G + + A D + + ++ + K FSI+ +G I +I
Sbjct: 1995 DFYQVTVPESIPV-----GYSVLTLSATDLESNENISYRILSS-SKEFSIDPKNGTIFTI 2048
Query: 202 VDLSALNT-STIQLVVVATDTGNPPRQA 228
+ L+T ST Q +V A+D GNP +A
Sbjct: 2049 SPVLLLDTISTTQFLVEASDGGNPDLRA 2076
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 16/198 (8%)
Query: 50 YSVSALENLPVNYVLLTVTT-NKPRDL--RVKYWLSNDYGERFSIS-RQGDISLMQCLDY 105
Y S E+ V V+L ++ +K L + +Y+L+++ F+I G + LD
Sbjct: 1483 YQSSVREDAEVGTVVLVLSAVDKDEGLNGQTEYFLTDEASGAFTIDPMSGTLKTSNTLDR 1542
Query: 106 ETEDSYRFTVYATDTLM----TTSATVNISVVNVNDWDPRFRYPQYELFL-PHIPLADLT 160
E + F+ A D + +T+ + + V +VND DP +++FL P P T
Sbjct: 1543 EARSQHTFSAVARDCSIQGSRSTTVIIKVYVTDVNDNDPVLEQNPFDVFLSPESPTNQTT 1602
Query: 161 PGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSIND-SGHISIVDLSALNTSTIQLVVVA 218
VI V A D D G T+ + MFSI+ +G I + I L +
Sbjct: 1603 ---VI--VRADDLDLGPNGTVVFSFAETQSMFSIDKYTGEIQFQQNPSSEYFPIWLQLKV 1657
Query: 219 TDTGNPPRQASVPAIMHF 236
TD G P R + ++H
Sbjct: 1658 TDQGIPARTTTGLLVIHM 1675
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 18/199 (9%)
Query: 45 FSKNEYSVSALENL-PVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSI----SRQGDISL 99
F ++ Y S EN P +V ++ + K G F + S G++
Sbjct: 1269 FKQHLYEASVKENQNPGEFVTRVEALDRDSGVNSKLQFEIMPGASFELFEINSDTGEVVT 1328
Query: 100 MQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
LD E ++ + V D ++++ T+ +V + ND P F Y++ + L
Sbjct: 1329 TTILDREIQEVFTLRVLVRDGGFPSLSSTTTILCTVEDENDHAPEFIVSSYDIEV----L 1384
Query: 157 ADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIVD-LSALNTST 211
+ P V+ V A+D D G+ + + G ++ F+IN+ SG +S L S
Sbjct: 1385 ENQEP-EVVYTVLASDMDAGNNRAVEYHIIDGNTDECFTINEMSGELSTTRALDREQISN 1443
Query: 212 IQLVVVATDTGNPPRQASV 230
LV++ +D G+PPR + +
Sbjct: 1444 FTLVILCSDLGDPPRSSVI 1462
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 56 ENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTV 115
EN V Y +++ + + K++ S + + G + L+ LD E S+ +
Sbjct: 2126 ENTYVEYSIISGNSQNNFHVETKFFHS-----EYPYKQVGYLVLLHSLDREASASHELVI 2180
Query: 116 YATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKVEAA 171
A+D+ ++++A ++I V++VND P F Y H + + TP GS I V A
Sbjct: 2181 LASDSGCPPLSSTAVISIQVLDVNDNPPNFSSLSY-----HTHVKESTPLGSHITVVSAN 2235
Query: 172 DGDKGDRVTLSLRGPYEKMFSINDSGHI 199
D D G + + S N+ GH
Sbjct: 2236 DRDTGSHAEIIY-----NIISGNEKGHF 2258
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD----LRVKYWL--SNDYGERFSISRQGDIS 98
FS Y E+ P+ + V+ N RD + Y + N+ G + G +
Sbjct: 2210 FSSLSYHTHVKESTPLGSHITVVSAND-RDTGSHAEIIYNIISGNEKGHFYLEENTGVLY 2268
Query: 99 LMQCLDYETEDSYRFTVYATDTLMT--TSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
L++ LDYE + TV A+D + A V +SV++ ND P+F + + +P
Sbjct: 2269 LIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVPE--- 2325
Query: 157 ADLTPGSVIGKVEAADGDKG 176
+L S I + A D D G
Sbjct: 2326 -NLPISSTICSINALDFDAG 2344
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 95 GDISLMQCLDYETEDSYRFTVYA----TDTLMTTSATVNISVVNVNDWDPRFRYPQYELF 150
G I L + DYE+ +Y F V+A L S TV + V + ND P F + L
Sbjct: 641 GWIYLRRQFDYESTQTYNFRVFAWIPEDGFLQNVSTTVIVRVWDENDNSPTFLHDVLFLK 700
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKG 176
+ P+ P VIGK+ A D D G
Sbjct: 701 VEESPV----PQGVIGKITAIDMDSG 722
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 49 EYSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSN-DYGERFSI-SRQGDISLMQCL 103
E V LE PVN ++ TV P + V Y +S+ D + F I + G+I L
Sbjct: 847 ELHVKVLEGQPVNMLVTTVFAKDPDEGNNAEVTYSVSSEDSSDHFKIDANNGEIRTTTIL 906
Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVV 133
Y+ SYR +V ATD + A VNI V+
Sbjct: 907 SYDYRPSYRMSVIATDQGVPPLQGQAVVNIQVI 939
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 20/228 (8%)
Query: 10 PITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT 69
PI L ++ R L++ G ++ + FS + Y EN ++TV
Sbjct: 1650 PIWLQLKVTDQGIPARTTTGLLVIHMEGEDVK-ISFSHHLYKGLVTENCEAGTSIVTVKA 1708
Query: 70 NKPRDLR--VKY--WLSNDYGERFSISRQGDISLMQ--CLDYETEDSYRFTVYATDTLMT 123
P ++ +KY + N+ G S+ G +++ + LD+E + + V A +
Sbjct: 1709 FAPDSIQDSMKYSIFSGNEDGVLSLCSKSGQLTVKEPKFLDFEVRNEVQLIVLAESSGHR 1768
Query: 124 TSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS- 182
V + + + ND P F Y+ + + L VI +V A D D G +
Sbjct: 1769 AYCKVAVLIQDENDNSPCFEQSIYQ---ASVSESQLYNAHVI-QVFATDLDSGLNGLIEY 1824
Query: 183 --LRGPYEKMFSIND-SGHI---SIVDLSALNTSTIQLVVVATDTGNP 224
L G E+ F I+ SG I +I+D TS+ L+V ATD G P
Sbjct: 1825 SILSGNQEEAFQIDALSGVITTKAILDYEL--TSSYSLIVQATDKGMP 1870
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 81 LSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDTL--MTTSATV--NISVVNV 135
+++D F I S GD+ L + LDYET Y F V TD ++ S+TV +I V +
Sbjct: 989 VADDKDGHFEIDSSTGDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQ 1048
Query: 136 NDWDPRFR 143
ND P F+
Sbjct: 1049 NDHSPSFQ 1056
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 47/208 (22%)
Query: 52 VSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSN------------DYGERFSISRQ 94
+S EN+P+ L+ V K D R++Y++ + +G ++SR
Sbjct: 1062 ISVEENVPIG-TLVYVFNAKDDDGSFLNSRIQYYIESHNPGTNPFLIHPSFGTLVTVSR- 1119
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTLMTT------SATVNISVVNVNDWDPRF-RYPQY 147
LD E+ + TV A+D + S T I +++VND +P F +P
Sbjct: 1120 --------LDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIVILDVNDHNPTFISFPN- 1170
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKM-FSINDSGHISIVDL 204
H+ D+T GS++ + A D D+G +VT S+ E M F +++S +
Sbjct: 1171 ----AHVK-EDVTVGSLVHHITAHDPDEGRNGKVTYSILSGNENMTFMLDESSGLLTTTC 1225
Query: 205 S---ALNTSTIQLVVVATDTGNPPRQAS 229
+ T I L V+A D G P +S
Sbjct: 1226 PLDYEMKTQHI-LTVLALDDGTPALSSS 1252
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 81 LSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDTLM---TTSATVNISVVNVN 136
LS + E F I + G I+ LDYE SY V ATD M + + + + V ++N
Sbjct: 1827 LSGNQEEAFQIDALSGVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDIN 1886
Query: 137 DWDPRF 142
D P F
Sbjct: 1887 DNAPAF 1892
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 27/230 (11%)
Query: 18 IQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVT-TNKPRDLR 76
IQ + Y L+V + FS++ Y V+ E++PV Y +LT++ T+ +
Sbjct: 1965 IQISDSVHYTEGALVVRVLDVNDNPPVFSQDFYQVTVPESIPVGYSVLTLSATDLESNEN 2024
Query: 77 VKYWLSNDYGERFSIS-RQGDI-SLMQCLDYETEDSYRFTVYATDTL---MTTSATVNIS 131
+ Y + + E FSI + G I ++ L +T + +F V A+D + V I
Sbjct: 2025 ISYRILSSSKE-FSIDPKNGTIFTISPVLLLDTISTTQFLVEASDGGNPDLRALTLVEIG 2083
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS----LRGPY 187
+ ++N++ P F Y L L D GS + D D T + G
Sbjct: 2084 IEDMNNYAPEFTVKSYNLSLSE----DALVGSTLVTFSNIDHDWTRENTYVEYSIISGNS 2139
Query: 188 EKMFSINDSGHIS---------IVDLSALN---TSTIQLVVVATDTGNPP 225
+ F + S +V L +L+ +++ +LV++A+D+G PP
Sbjct: 2140 QNNFHVETKFFHSEYPYKQVGYLVLLHSLDREASASHELVILASDSGCPP 2189
>sp|Q96QU1|PCD15_HUMAN Protocadherin-15 OS=Homo sapiens GN=PCDH15 PE=1 SV=2
Length = 1955
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER-FSISRQ-GDISLMQ 101
+F + YS+ E + V VLL + + Y + N +R F++S G ++L +
Sbjct: 615 RFPQLMYSLEISEAMRVGAVLLNLQATDREGDSITYAIENGDPQRVFNLSETTGILTLGK 674
Query: 102 CLDYETEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYELFLP-HIPLAD 158
LD E+ D Y + A+D T++ATVNI V +VND P F + +LP ++ + +
Sbjct: 675 ALDRESTDRYILIITASDGRPDGTSTATVNIVVTDVNDNAPVF-----DPYLPRNLSVVE 729
Query: 159 LTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHI-SIVDLSALNTSTIQLV 215
+ +G+V+A D D G +V SL G + +F I +G I + V L+ +LV
Sbjct: 730 EEANAFVGQVKATDPDAGINGQVHYSL-GNFNNLFRITSNGSIYTAVKLNREVRDYYELV 788
Query: 216 VVATDTGNPPRQASV 230
VVATD PR +++
Sbjct: 789 VVATDGAVHPRHSTL 803
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 6 DFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVN---- 61
DF Q LV++A Q + A A L + + + F+ Y LE+ PV
Sbjct: 356 DFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS 415
Query: 62 ----------YVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQG---DISLMQCLDYETE 108
V L +D + +L NDY F++++ G ++L+Q +D E +
Sbjct: 416 DSLNLTSPLRIVALDKDIEDTKDPELHLFL-NDYTSVFTVTQTGITRYLTLLQPVDREEQ 474
Query: 109 DSYRFTVYATDTLMTTSAT-VNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
+Y F++ A D + + VNI V++ ND P F Y++++ D+ PG + +
Sbjct: 475 QTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV----YTDMRPGDSVIQ 530
Query: 168 VEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIV-DLSALNTSTIQLVVVATDTGN 223
+ A D D+G +T + + F IN +G I+I + + T L V A D
Sbjct: 531 LTAVDADEGSNGEITYEILVGAQGDFIINKTTGLITIAPGVEMIVGRTYALTVQAADNAP 590
Query: 224 P 224
P
Sbjct: 591 P 591
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 103/233 (44%), Gaps = 26/233 (11%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
LVV A R++ TL + F+ + Y+V ENLP +L + K
Sbjct: 787 LVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLVEENLPAGTTILQIEA-KD 845
Query: 73 RDL--RVKYWLSNDYGERFSISR--QGDISLMQCLDYET----EDSYRFTVYATD---TL 121
DL V Y + + + F G++SL++ LDYE E S F V A D T+
Sbjct: 846 VDLGANVSYRIRSPEVKHFFALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTM 905
Query: 122 MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK----GD 177
ATV + V ++ND+ P F Y+ + D G+ I V A D D
Sbjct: 906 PPGIATVTVIVKDMNDYPPVFSKRIYKGMV----APDAVKGTPITTVYAEDADPPGLPAS 961
Query: 178 RVTL---SLRGPY-EKMFSIN-DSGH-ISIVDLSALNTSTIQLVVVATDTGNP 224
RV ++ PY +F + DSG I+ V+L+ T+ +LVVVA D G P
Sbjct: 962 RVRYRVDDVQFPYPASIFEVEEDSGRVITRVNLNEEPTTIFKLVVVAFDDGEP 1014
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 76 RVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMT---TSATVNISV 132
+V Y L N + F I+ G I L+ E D Y V ATD + ++ T+ I V
Sbjct: 751 QVHYSLGN-FNNLFRITSNGSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKV 809
Query: 133 VNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMF 191
++++D P F Y + + +L G+ I ++EA D D G V+ +R P K F
Sbjct: 810 LDIDDNSPVFTNSTYTVLVEE----NLPAGTTILQIEAKDVDLGANVSYRIRSPEVKHF 864
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2
Length = 4588
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 33 VSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWL---SNDYGERF 89
+SK SL + F ++ ++ + +E+ PV +++ ++ P + W +Y F
Sbjct: 1346 ISKPKPSLEPISFEESFFTFTVMESDPVAHMIGVISVEPPG---IPLWFDITGGNYDSHF 1402
Query: 90 SISR-QGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYE 148
+ + G I + + LD E + +Y TV ATD T V I V++ ND P+F +YE
Sbjct: 1403 DVDKGTGTIIVAKPLDAEQKSNYNLTVEATDGTTTILTQVFIKVIDTNDHRPQFSTSKYE 1462
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR 184
+ +P D P + I ++ A D D+ +++ +L+
Sbjct: 1463 VVIPE----DTAPETEILQISAVDQDEKNKLIYTLQ 1494
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 25/227 (11%)
Query: 33 VSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTV-TTNKPRDL--RVKYWLSNDYG-ER 88
V+ G +L F +NEY V EN P++ +++ V TT+ + V Y + ND+ +R
Sbjct: 2480 VTVIGGNLHSPAFLQNEYEVELAENAPLHTLVMEVKTTDGDSGIYGHVTYHIVNDFAKDR 2539
Query: 89 FSISRQGDISLMQCLDYET--EDSYRFTVYATDTLMTTS-ATVNISVVNVNDWDPRFRYP 145
F I+ +G I ++ LD ET E + A D + TVN+ + + ND P+FR
Sbjct: 2540 FYINERGQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRAT 2599
Query: 146 QYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSLRGPYEKM---FSIND-SGHI 199
+YE+ + + G+ + KV A+D D+G +T ++ E + IN SG I
Sbjct: 2600 KYEVNIG----SSAAKGTSVVKVLASDADEGSNADITYAIEADSESVKENLEINKLSGVI 2655
Query: 200 SIVD-LSALNTSTIQLVVVATDTGNPPRQASV-------PAIMHFPE 238
+ + L L V A D G+P +++ V P M P+
Sbjct: 2656 TTKESLIGLENEFFTFFVRAVDNGSPSKESVVLVYVKILPPEMQLPK 2702
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 40/244 (16%)
Query: 4 EDDFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYV 63
E++F T VRA+ + + ++ + V ++ +FS+ Y+ + E++P+
Sbjct: 2665 ENEFF---TFFVRAVDNGSPSKESVVLVYVKILPPEMQLPKFSEPFYTFTVSEDVPIGTE 2721
Query: 64 LLTVTTNKPRDLRVKYWLSN----DYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYAT 118
+ + + N + E F I RQ G + L + LD+ET Y+F++ A
Sbjct: 2722 IDLIRAEHSGTVLYSLVKGNTPESNRDESFVIDRQSGRLKLEKSLDHETTKWYQFSILAR 2781
Query: 119 ----DTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGD 174
D M S V+I V + ND P F YE F+ + +L GS + ++ A+D D
Sbjct: 2782 CTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAFI----VENLPGGSRVIQIRASDAD 2837
Query: 175 KGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTST----------------IQLVVVA 218
G + M+S++ S + +++ A+N T Q+ VVA
Sbjct: 2838 SGTNGQV--------MYSLDQSQSVEVIESFAINMETGWITTLKELDHEKRDNYQIKVVA 2889
Query: 219 TDTG 222
+D G
Sbjct: 2890 SDHG 2893
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 27 ALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS---- 82
A T+IVS + F EY + E++ V +L V RD+ ++
Sbjct: 3212 ATGTVIVSVLDINDNPPVFEYREYGATVSEDILVGTEVLQVYAAS-RDIEANAEITYSII 3270
Query: 83 --NDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVN 136
N++G +FSI S+ G + +++ LDYE+ Y TV ATD ++ ATVN++V ++N
Sbjct: 3271 SGNEHG-KFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDIN 3329
Query: 137 DWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS-LRGPYEKMFSIND 195
D P F Y + + + + +V+ + ADG + S + G F+I+
Sbjct: 3330 DNTPVFSQDTYTTVISEDAVLEQSVITVMA--DDADGPSNSHIHYSIIDGNQGSSFTIDP 3387
Query: 196 -SGHISIVDLSALNTSTIQ---LVVVATDTGNPPR 226
G + + L L+ TI L V A+D G+PPR
Sbjct: 3388 VRGEVKVTKL--LDRETISGYTLTVQASDNGSPPR 3420
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 90 SISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYEL 149
+I + + + + LD E D+Y T+ ATD ++ A V + V++ ND P Y
Sbjct: 2971 TIQNEWKVYVKKPLDREKRDNYLLTITATDGTFSSKAIVEVKVLDANDNSPVCEKTLYSD 3030
Query: 150 FLPHIPLADLTPGSVIGKVEAADGD--KGDRVTLSLRGPYEKMFSIN-DSGHISI-VDLS 205
+P D+ PG +I ++ A D D +T +L G + F +N D+G + L
Sbjct: 3031 TIPE----DVLPGKLIMQISATDADIRSNAEITYTLLGSGAEKFKLNPDTGELKTSTPLD 3086
Query: 206 ALNTSTIQLVVVATDTGNPPRQASV 230
+ L+V ATD G QAS+
Sbjct: 3087 REEQAVYHLLVRATDGGGRFCQASI 3111
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
L+VRA D R+ A+++++ + +FS + Y+++ EN +L V
Sbjct: 3095 LLVRAT--DGGGRFCQASIVLTLEDVNDNAPEFSADPYAITVFENTEPGTLLTRVQATDA 3152
Query: 73 R---DLRVKYWLSNDYGERFSISR-QGDISLMQCLDYETEDSYRFTVYATDT----LMTT 124
+ ++ Y L + +FSI+ G I L + LD E + Y ++ A D +T
Sbjct: 3153 DAGLNRKILYSLIDSADGQFSINELSGIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTA 3212
Query: 125 SATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAA--DGDKGDRVTLS 182
+ TV +SV+++ND P F Y +Y + D+ G+ + +V AA D + +T S
Sbjct: 3213 TGTVIVSVLDINDNPPVFEYREYGATVSE----DILVGTEVLQVYAASRDIEANAEITYS 3268
Query: 183 -LRGPYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATDTGNP 224
+ G FSI+ +G + I++ L ++ L V ATD G P
Sbjct: 3269 IISGNEHGKFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTP 3313
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSN-DYGERFSIS-RQGDISLMQC 102
F K YS E++ V+ ++ V N P L+V Y +++ D +F+I+ G I+++
Sbjct: 2182 FEKPFYSAEIAESIQVHSPVVHVQANSPEGLKVFYSITDGDPFSQFTINFNTGVINVIAP 2241
Query: 103 LDYETEDSYRFTVYATDTLMTTSATVNISVV--NVNDWDPRFRYPQYELFLPHIPLADLT 160
LD+E +Y+ ++ ATD+L A V + ++ ++ND P F Y + L+
Sbjct: 2242 LDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAV--------TLS 2293
Query: 161 PGSVIG----KVEAADGDKGDRVTLSLRGPYEKMFSINDSGH 198
SVIG +V A D D RG +MF + H
Sbjct: 2294 EASVIGTSVVQVRATDSDSEPN-----RGISYQMFGNHSKSH 2330
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 56 ENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYG-ERFSISRQ-GDISLMQCLDYETEDS 110
E+ PV +++TV+ + RD ++Y + + G F I + G I LD E+
Sbjct: 1045 EDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVGVFKIGEETGVIETSDRLDRESTSH 1104
Query: 111 YRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV-IG 166
Y TV+ATD +++ + I V +VND P+ P ++ P I + +P V +
Sbjct: 1105 YWLTVFATDQGVVPLSSFIEIYIEVEDVNDNAPQTSEP---VYYPEI--MENSPKDVSVV 1159
Query: 167 KVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQ-----------LV 215
++EA D D L K+ S N G SI + L T+T + L
Sbjct: 1160 QIEAFDPDSSSNDKLMY-----KITSGNPQGFFSIHPKTGLITTTSRKLDREQQDEHILE 1214
Query: 216 VVATDTGNPPR 226
V TD G+PP+
Sbjct: 1215 VTVTDNGSPPK 1225
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 19/215 (8%)
Query: 24 DRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLR---VKYW 80
DR A ++V G + +F++ Y + EN+P+ +++++ P + V Y
Sbjct: 442 DRKASTKVLVKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYS 501
Query: 81 LSNDYGERFSISR-QGDISLMQCLDYE-TEDSYRFTVYATDTLMTTSATVN----ISVVN 134
++N F+I G +S + LDYE Y + A+D + V I++ N
Sbjct: 502 IANLNHVPFAIDHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEVLATITLNN 561
Query: 135 VNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYE-KMFSI 193
+ND P F E +P DL G I V A D D+ V + E FS+
Sbjct: 562 LNDNTPLFEKINCEGTIPR----DLGVGEQITTVSAIDADELQLVQYQIEAGNELDFFSL 617
Query: 194 NDSGHI-----SIVDLSALNTSTIQLVVVATDTGN 223
N + + S++D S L + ATD N
Sbjct: 618 NPNSGVLSLKRSLMDGLGAKVSFHSLRITATDGEN 652
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSI-SRQGDIS 98
+F + Y V E+ V+ ++ V +DL V Y + D + FSI S G ++
Sbjct: 821 EFLQESYFVEVSEDKEVHSEIIQVEATD-KDLGPNGHVTYSIVTD-TDTFSIDSVTGVVN 878
Query: 99 LMQCLDYETEDSYRFTVYATDTL-----MTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
+ + LD E + + + A D + ++ V +S+ +VND P F P Y + +
Sbjct: 879 IARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKV-- 936
Query: 154 IPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIND-SGHISIV-DLSALNT 209
DL G+VI +EA D D G +V SL E F ++ SG + IV L
Sbjct: 937 --REDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLDFEKK 994
Query: 210 STIQLVVVATDTGNP 224
L V A D G P
Sbjct: 995 QVYNLTVRAKDKGKP 1009
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 45 FSKNEYSVSALENLPVNY-VLLTVTTNKPRDLRVKYWL-----SNDYGERFSISRQGDIS 98
FS+ YSV EN PV + VL V T++ + ND + F ++ QG +
Sbjct: 3440 FSRGNYSVIIQENKPVGFSVLQLVVTDEDSSHNGPPFFFTIVTGNDE-KAFEVNPQGVLL 3498
Query: 99 LMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP 155
+ + +D Y V D +++ ++I V+ + + P E+F+
Sbjct: 3499 TSSAIKRKEKDHYLLQVKVADNGKPQLSSLTYIDIRVIEESIYPPAIL--PLEIFI--TS 3554
Query: 156 LADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSG 197
+ G VIGK+ A D D D +T SL + +FS++ +G
Sbjct: 3555 SGEEYSGGVIGKIHATDQDVYDTLTYSLDPQMDNLFSVSSTG 3596
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSAT---VNISVVNVNDWDPRFRYPQYE 148
S G ISL++ LDYE + V A D M T ++ V + V ++ND P F YE
Sbjct: 2337 SSTGLISLLRTLDYEQSRQHTIFVRAVDGGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYE 2396
Query: 149 LFL-PHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSINDSGHISIVDL 204
+ H P G + V+A D D D L L G K F I+ + I+ L
Sbjct: 2397 ARISEHAPH-----GHFVTCVKAYDADSSDIDKLQYSILSGNDHKHFVIDSA--TGIITL 2449
Query: 205 SALNTSTIQ 213
S L+ ++
Sbjct: 2450 SNLHRHALK 2458
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 89 FSI-SRQGDISLMQCLDYETEDSYRFTVYATDT-----LMTTSATVNISVVNVNDWDPRF 142
F+I S G I + LDYE + FTV D +A V + V+++ND P F
Sbjct: 1820 FAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTVHVIDINDCPPVF 1879
Query: 143 RYPQYE--LFLP 152
P YE L LP
Sbjct: 1880 AKPLYEASLLLP 1891
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 83 NDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRF 142
ND+ S G I+L + + Y + +D + +S V+++V+ N P F
Sbjct: 2433 NDHKHFVIDSATGIITLSNLHRHALKPFYSLNLSVSDGVFRSSTQVHVTVIGGNLHSPAF 2492
Query: 143 RYPQYELFLPHIPLADLTP-GSVIGKVEAADGDKG--DRVTLSLRGPYEK-MFSINDSGH 198
+YE + LA+ P +++ +V+ DGD G VT + + K F IN+ G
Sbjct: 2493 LQNEYE-----VELAENAPLHTLVMEVKTTDGDSGIYGHVTYHIVNDFAKDRFYINERGQ 2547
Query: 199 I---SIVDLSALNTSTIQLVVVATDTG 222
I +D I + ++A D G
Sbjct: 2548 IFTLEKLDRETPAEKVISVRLMAKDAG 2574
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 44 QFSKNEYSVSALEN-LPVNYVLLTVTTNKPRDLRVKYWLSNDYG----ERFSIS-RQGDI 97
QFS ++Y V E+ P +L ++ ++ Y L + ++F + G +
Sbjct: 1455 QFSTSKYEVVIPEDTAPETEILQISAVDQDEKNKLIYTLQSSRDPLSLKKFRLDPATGSL 1514
Query: 98 SLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
+ LD+E + TV D + A + ++V + ND P F Y+ +
Sbjct: 1515 YTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHAPWFTASSYKGRV--- 1571
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHI--------------S 200
GSV+ +V A D DKG E ++SI +SG+I +
Sbjct: 1572 -YESAAVGSVVLQVTALDKDKGKNA--------EVLYSI-ESGNIGNSFMIDPVLGSIKT 1621
Query: 201 IVDLSALNTSTIQLVVVATDTGNPP 225
+L N + L+V ATD G+PP
Sbjct: 1622 AKELDRSNQAEYDLMVKATDKGSPP 1646
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 29/203 (14%)
Query: 43 LQFSKNEYSVSALENLPVNY-----VLLTVTTNKPRDLRVKYWLSNDYGERFSISRQ--- 94
LQF+ EY+V+ EN V + V P V+Y + + E + +
Sbjct: 32 LQFTHLEYNVTVQENSAAKTYVGHPVKMGVYITHPA-WEVRYKIVSGDSENLFKAEEYIL 90
Query: 95 GDISLMQC---------LDYETEDSYRFTVYA--TDTLMTTSATVNISVVNVNDWDPRFR 143
GD ++ L+ E +D Y V A +T + V + V++ ND P F
Sbjct: 91 GDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFS 150
Query: 144 YPQYELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISI 201
Y + LP + + I +V A D D G S + + MF+I+ + + +
Sbjct: 151 PTSYSVSLPE----NTAIRTSIARVSATDADIGTNGEFYYSFKDRTD-MFAIHPTSGVIV 205
Query: 202 V--DLSALNTSTIQLVVVATDTG 222
+ L L T ++ ++A D G
Sbjct: 206 LTGRLDYLETKLYEMEILAADRG 228
>sp|Q5F226|FAT2_MOUSE Protocadherin Fat 2 OS=Mus musculus GN=Fat2 PE=2 SV=1
Length = 4351
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 6 DFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQ--------------FSKNEYS 51
DF + V + Y++++++ A S E FS+ YS
Sbjct: 2219 DFKTGVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYS 2278
Query: 52 VSALENLPVN---YVLLTVTTNKPRDLRVKYWL---SNDYGERFSIS-RQGDISLMQCLD 104
S E P LL + ++ V Y + +D + F I+ G++ +Q LD
Sbjct: 2279 TSVSEGSPAQTPVIQLLASDQDSGQNQDVSYQIVEDGSDVSKFFRINGSTGEMFTIQELD 2338
Query: 105 YETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP 161
YE +R V ATD +T V ++V ++ND P FR PQYE + + T
Sbjct: 2339 YEAHQHFRVKVRATDRGDPPLTGETLVVVNVSDINDNPPEFREPQYEANVSEL----ATC 2394
Query: 162 GSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIND-SGHISIVDLSALN-TSTIQLVV 216
G ++ KV+A D D GD L L G ++ FSIN SG IS+ +L S+ L V
Sbjct: 2395 GHLVLKVQALDPDIGDTSRLEYLILSGNQDRHFSINSTSGIISMFNLCKKQLDSSYNLRV 2454
Query: 217 VATDTGNPPRQASVP 231
A+D QA+VP
Sbjct: 2455 GASDG---VFQATVP 2466
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER---FSISRQ-GDIS 98
L F ++ YS + +E PVN++L ++ L +W G++ F I + G I
Sbjct: 1347 LSFDESHYSFAVMETDPVNHMLGVISVEGRPGL---FWFHISDGDKDMDFDIEKTTGSIV 1403
Query: 99 LMQCLDYETEDSYRFTVYATDTLMTTSATVNI-SVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ + LD + SY TV TD T + V+I + N+N P+F Y++ +P
Sbjct: 1404 IARPLDTRRKSSYNLTVEVTDGFHTIATQVHILMIANINHHRPQFLQDHYDIRVPQ---- 1459
Query: 158 DLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVV 217
D PG + +V+A D D G + +++I+ S +L L+ S+ LV V
Sbjct: 1460 DTLPGVELLRVQATDQDHGKGL----------IYTIHSSRDPGSANLFQLDPSSGVLVTV 1509
Query: 218 AT 219
T
Sbjct: 1510 GT 1511
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYG----ERFSI-SRQGD 96
F + Y EN+P ++ VT N D +V Y LS + G + F++ S G
Sbjct: 2799 FEADPYKAFLTENMPGGTTVIQVTANDQDTGSDGQVSYRLSVEPGSNIHQLFAVDSESGW 2858
Query: 97 ISLMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
I+ +Q LD ET+ +YRF V A D +++ A V +S+ + ND PRF Y +
Sbjct: 2859 ITTLQELDCETQQTYRFYVVAFDHGQTIQLSSQALVEVSITDENDNPPRFASEDYRGSV- 2917
Query: 153 HIPLADLTPGSVIGKVEAADGD---KGDRVTLSL-RGPYEKMFSINDSG-HISIVDLSAL 207
+ + PG ++ ++ D D + +VT + G FSI+ G I L
Sbjct: 2918 ---VENNEPGELVATLKTLDADISEQNRQVTCYITEGDPLGQFSISQVGDEWRITSRKTL 2974
Query: 208 NTSTIQLVVVATDTGNPPRQASVP 231
+ I ++ + QASVP
Sbjct: 2975 DREHIAKYLLRITASDGKFQASVP 2998
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT------NKPRDLRVKYWLSNDYGERFSISRQGD- 96
+F+ +Y S +EN ++ T+ T + R + Y D +FSIS+ GD
Sbjct: 2907 RFASEDYRGSVVENNEPGELVATLKTLDADISEQNRQVTC-YITEGDPLGQFSISQVGDE 2965
Query: 97 --ISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
I+ + LD E Y + A+D S V + V+++ND P+ +L
Sbjct: 2966 WRITSRKTLDREHIAKYLLRITASDGKFQASVPVEVFVLDINDNSPQCS----QLLYTGK 3021
Query: 155 PLADLTPGSVIGKVEA--ADGDKGDRVTLSLRGPYEKMFSIN-DSGHISIVD-LSALNTS 210
D+TPG I KV A D D ++T SL GP + F ++ +G ++ + L
Sbjct: 3022 VREDVTPGHFILKVSAIDVDMDTNAQITYSLHGPGAQEFKLDPHTGELTTLSVLDRERKD 3081
Query: 211 TIQLVVVATDTGNPPRQASV 230
LV ATD G QA V
Sbjct: 3082 VYNLVAKATDGGGQSCQAEV 3101
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSIS--RQGDISLMQC 102
F Y V EN+ + +L P LR+ Y + + + + G +++
Sbjct: 2171 FQSPYYKVKVPENITLYTPILHTQARSPEGLRLIYNIVEEEPLMLFTTDFKTGVLTVTGP 2230
Query: 103 LDYETEDSYRFTVYATDTLMT--TSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
LDYE+++ + FTV ATDT + + ATV + V ++ND P F Y +++ +
Sbjct: 2231 LDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYS-----TSVSEGS 2285
Query: 161 PGSV-IGKVEAADGDKGDRVTLSLR-----GPYEKMFSINDS-GHI-SIVDLSALNTSTI 212
P + ++ A+D D G +S + K F IN S G + +I +L
Sbjct: 2286 PAQTPVIQLLASDQDSGQNQDVSYQIVEDGSDVSKFFRINGSTGEMFTIQELDYEAHQHF 2345
Query: 213 QLVVVATDTGNPP 225
++ V ATD G+PP
Sbjct: 2346 RVKVRATDRGDPP 2358
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 28 LATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL--S 82
+ T++++ + +F+ + Y+V LEN V V+LTV+ + P + + Y L
Sbjct: 3306 VTTIVINVTDVNEHHPRFTHDLYTVRVLENAIVGDVILTVSASDDDGPVNSVITYSLVGG 3365
Query: 83 NDYGERFSIS-RQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDW 138
N G F+I ++G + + + LD+E SY + ATD+ + V + VV+VND
Sbjct: 3366 NQLG-HFTIDPKKGKLQVAKALDWEQTPSYSLRIRATDSGQPPLHEDTEVAVEVVDVNDN 3424
Query: 139 DPRF 142
PRF
Sbjct: 3425 PPRF 3428
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 86/204 (42%), Gaps = 24/204 (11%)
Query: 41 RELQFSKNEYSVSALENLPVNYVL--LTVTTNKPRDLRVKYWLSNDYGERFSISRQGDIS 98
+ LQF ++ Y EN P + VL L V N D + Y+L N + G +
Sbjct: 1964 KSLQFDQDIYRARVTENTPHSNVLVILGVHGNHLNDT-LSYFLLNGTDLFHMVKSAGVLQ 2022
Query: 99 LMQC-LDYETEDSYRFTVYATDTLM---TTSATVNISVVNVNDWDPRFRY-PQYELFLPH 153
D E +D++ V D + A V +SV +VND P F++ P Y +
Sbjct: 2023 TRGVTFDREQQDTHEVAVEVRDNRVPRRVAQALVRVSVEDVNDNIPEFQHLPYYTV---- 2078
Query: 154 IPLADLT-PGSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSINDS-GHISI---VDLSA 206
+ D T PG V+ +V A D D G VT Y F I+ G IS+ D A
Sbjct: 2079 --IQDGTEPGDVLFQVSATDKDLGANGTVTYGFAEDY-AYFRIDPYVGDISLKKPFDYQA 2135
Query: 207 LNTSTIQLVVVATDTGNPPRQASV 230
LN L V A D G PP Q V
Sbjct: 2136 LN--KYHLRVTARDAGTPPLQTEV 2157
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 19/193 (9%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSIS-RQGDISL 99
Q S+ Y+ E++ + +L V+ + + ++ Y L + F + G+++
Sbjct: 3012 QCSQLLYTGKVREDVTPGHFILKVSAIDVDMDTNAQITYSLHGPGAQEFKLDPHTGELTT 3071
Query: 100 MQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA- 157
+ LD E +D Y ATD + A V + + +VND PRF F H +A
Sbjct: 3072 LSVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRF-------FPSHCAVAV 3124
Query: 158 --DLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISIVD--LSALNTST 211
+ T + + V A D D+G +V SL + FSI+ + + ++ L ++S
Sbjct: 3125 FDNTTVKTPVAVVFARDPDQGVNAQVVYSLTDSADGQFSIDATSGVIRLEKPLQVRSSSA 3184
Query: 212 IQLVVVATDTGNP 224
++L V A+D G P
Sbjct: 3185 VELTVRASDLGTP 3197
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT-----LMTTSATVNISVVNVNDWDPRFRYPQYEL 149
G +++ LDYET ++F++Y D SA V I V +VND PRF YE+
Sbjct: 1820 GTLTITSELDYETTPLFQFSIYVHDQGTPILFAPRSARVIIHVRDVNDSPPRFSEQIYEV 1879
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSIND-SGHISIVDLSAL 207
+ + + PG + V+A D D +VT S++ ++ +I+ +G IS+V+ +AL
Sbjct: 1880 AV----VEPIHPGMELLTVQAEDNDS--KVTYSIKTSNTDEAVTIHPITGQISVVNPAAL 1933
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 51 SVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSIS-RQGDISLMQCLDY 105
S+ E++P+ VL + + P DL VKY L +D F + G +SL + LD+
Sbjct: 931 SLKVPEDMPLGTVLTFLDASDP-DLGPAGEVKYILVDDVHGTFRVDPMTGALSLEKELDF 989
Query: 106 ETEDSYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP 161
E Y + +A+D+ T V + V++VN+ P + F+ + + +P
Sbjct: 990 ERRAGYNLSFWASDSGRPLARRTLCHVEVLVMDVNE---NLHSPHFSSFVYQGQVQENSP 1046
Query: 162 -GSVIGKVEAADGDKG--DRVTLSLR-GPYEKMFSIN-DSGHI-SIVDLSALNTSTIQLV 215
G+ + V A D D G + LR G + FSIN D+G + ++ L T L
Sbjct: 1047 AGTQVMVVTAQDDDSGLDGELQYFLRAGTGLEAFSINQDTGMLETLAPLDREFTPYYWLT 1106
Query: 216 VVATDTGNPPRQA 228
V+A D G+ P A
Sbjct: 1107 VLAVDRGSVPLSA 1119
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYW-LSNDYGERFSI-SRQGDI 97
+F + +Y + E +++L V P D+ R++Y LS + FSI S G I
Sbjct: 2378 EFREPQYEANVSELATCGHLVLKVQALDP-DIGDTSRLEYLILSGNQDRHFSINSTSGII 2436
Query: 98 SLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
S+ + + SY V A+D + + V I+ N N + P F+ YE L
Sbjct: 2437 SMFNLCKKQLDSSYNLRVGASDGVFQATVPVYINTTNANKYSPEFQQNVYEAELAE---- 2492
Query: 158 DLTPGSVIGKVEAADGDKGDRVTL------SLRGPYEKMFSINDSGHISIVDLSALNTST 211
+ G+ + ++ A D D G T+ L G + F IN SG I+ + ST
Sbjct: 2493 NAKVGTKVIELLAIDKDSGPYGTVDYTIINKLAG---ERFFINPSGQITTLQKLDRENST 2549
Query: 212 ---IQLVVVATDTG 222
I + ++A D G
Sbjct: 2550 ERVIAIKIMARDGG 2563
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 23/240 (9%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
L V+A + R+ LA ++V + FSK+EY + E++P+ +L ++
Sbjct: 1628 LTVKAEDQGSPQRHDLAMVVVHVHPSDSSAPIFSKDEYFIEIPESVPIGSPILLISAASS 1687
Query: 73 RDLRVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNI 130
D+ + N FS+ S G IS + LD+E SY+ + ++ + T +
Sbjct: 1688 SDVTYELREGNK-NSVFSMNSYSGLISTQKRLDHEKVSSYQLKIRGSNMAGVFTEVVALV 1746
Query: 131 SVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK------VEAADGDKGDRVTLS-- 182
+++ ND P F F+ HI A ++G+ + A+D D+ L
Sbjct: 1747 YIIDENDNAPAFL---KSTFVGHISEAAPLHSLILGEDNSPLVIRASDSDQEANSLLVYK 1803
Query: 183 -LRGPYEKMFSINDS-GHISIV-DLSALNTSTIQLVVVATDTGNP----PRQASVPAIMH 235
L K F I+ S G ++I +L T Q + D G P PR A V I+H
Sbjct: 1804 ILEPEALKFFKIDPSMGTLTITSELDYETTPLFQFSIYVHDQGTPILFAPRSARV--IIH 1861
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 15/209 (7%)
Query: 28 LATLIVSKAGTSLRELQFSKNEYSVSALENLPVNY-VLLTVTTNKPRDLRVKYWLS--ND 84
L T+ VS G F +E+S E+ ++ VL T +P + Y ++ N+
Sbjct: 3203 LGTVTVSIVGLEDYLPIFLNSEHSTQVPEDALIDMEVLYLATLTRPGSEKTGYHITGGNE 3262
Query: 85 YGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTS---ATVNISVVNVNDWDPR 141
G+ + G + + LD+ET Y ++ + ++ T+ I+V +VN+ PR
Sbjct: 3263 QGKFRLDAHTGILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPR 3322
Query: 142 FRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK--GDRVTLSLRGPYE-KMFSIN-DSG 197
F + Y + + L + G VI V A+D D +T SL G + F+I+ G
Sbjct: 3323 FTHDLYTVRV----LENAIVGDVILTVSASDDDGPVNSVITYSLVGGNQLGHFTIDPKKG 3378
Query: 198 HISIVD-LSALNTSTIQLVVVATDTGNPP 225
+ + L T + L + ATD+G PP
Sbjct: 3379 KLQVAKALDWEQTPSYSLRIRATDSGQPP 3407
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 51 SVSALENLPVNYVLLTVTTNKPR---DLRVKYWLSNDYGER-FSISRQ-GDISLMQCLDY 105
S+ LE +PVN L + P R+ Y +++ E F I + G +++ LDY
Sbjct: 721 SIDILEQVPVNTPLAHLAATDPDPGFHGRLVYVIADGNEEGCFDIELETGLLTVAAALDY 780
Query: 106 ETEDSYRFTVYATDTLMTTSATVNISVVNVNDWD---PRFRYPQYELFLPHIPLADLTPG 162
ET Y V D ++ + V V DW+ PRF Y+L + D G
Sbjct: 781 ETTSFYVLNVTVYDLGTPPKSSWKLLTVTVKDWNDKPPRFPPGGYQLTISE----DTEVG 836
Query: 163 SVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN 194
+ + +++ D D D RV +L P EK FS++
Sbjct: 837 TTVAELKTRDTDSEDNGRVRYTLLTPTEK-FSLH 869
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 128 VNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LR 184
V I V + N P F P+YE +P TPG+ + +V A D D+G + L+
Sbjct: 1541 VTIHVEDGNLHSPHFTQPRYEANVPDT----TTPGTELLQVRAVDADRGANAEVHYSFLK 1596
Query: 185 GPYEKMFSIND-SGHISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
G E F+I+ G I++ L ++ + L V A D G+P R ++H
Sbjct: 1597 GNSEGFFNIDSLLGIITVAQRLDHVHLNRHALTVKAEDQGSPQRHDLAMVVVH 1649
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELF 150
G +S + LD E +D Y V D L +TS V + V++VND P F + + +
Sbjct: 1192 GLLSTAKQLDRENKDEYVLEVTVQDNGDPPLRSTSRVV-VCVLDVNDNSPMFSHKLFNVR 1250
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDLSAL 207
L L+ L+P V ++ A+D D+G +T S+ E+ F I+ +G +S A
Sbjct: 1251 LSER-LSPLSPEPVY-RLVASDPDEGLNGSITYSIEESDEESFRIDPVTGVVSSSSTFAA 1308
Query: 208 NTSTIQLVVVATDTGNPPRQASV 230
I L + ATD+G P SV
Sbjct: 1309 GEYNI-LTIKATDSGQPALSTSV 1330
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSISRQ-GDISLM 100
F+++ Y + EN+P +LTVT + + + Y ++ FSI G IS
Sbjct: 458 FNRSSYEGTLDENIPPGTSVLTVTATDQDHGDNGHITYSIAGPKAVPFSIDPYLGVISTT 517
Query: 101 QCLDYE-TEDSYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP 155
+ +DYE + Y F V A+D +V++ + N+ND P F + L
Sbjct: 518 KSMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNQPMFEEVNCTVSL---- 573
Query: 156 LADLTPGSVIGKVEAADGDKGDRVTLSL-RGPYEKMFSIND-SGHISI----VDLSALNT 209
D G I V A D D+ + + G + F +N SG IS+ ++L+A+
Sbjct: 574 RQDAPVGKSIMAVSAIDMDELQNLKYEIVSGNEQDYFHLNHFSGVISLKRSFMNLTAVRP 633
Query: 210 STIQLVVVATDTGN 223
+ L + A+D N
Sbjct: 634 TVYSLKITASDGKN 647
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 77 VKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
V Y + DY GDISL + DY+ + Y V A D + T V+++V
Sbjct: 2105 VTYGFAEDYAYFRIDPYVGDISLKKPFDYQALNKYHLRVTARDAGTPPLQTEVEVHVTVR 2164
Query: 134 NVNDWDPRFRYPQYELFLP 152
N + +P F+ P Y++ +P
Sbjct: 2165 NKS--NPLFQSPYYKVKVP 2181
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 103 LDYETEDSYRFTVYATDTLMTTSA--TVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
L+ E DSY V A+D + A V + +++ ND P F P Y + D
Sbjct: 107 LNREVRDSYTLVVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRFTISE----DRP 162
Query: 161 PGSVIGKVEAADGDKG 176
S I KV A D D G
Sbjct: 163 LKSPICKVTATDADLG 178
>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2
Length = 4555
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
L+ RA D R+ +++++ + FS N Y+ EN +L V P
Sbjct: 3100 LIARAT--DGGGRFCSSSVLLLLEDVNDNPPVFSSNHYTACVYENTATKALLTRVQAMDP 3157
Query: 73 R---DLRVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATD----TLMTT 124
+ +V Y L + FSI S G I L Q LD E + SY +V ATD +++
Sbjct: 3158 DVGINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSYNISVRATDQSPGQSLSS 3217
Query: 125 SATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLS 182
A+V I+V+++ND P F Y + +P D + G+ + V A D G +T
Sbjct: 3218 LASVTITVLDINDNPPVFERRDYLVTVPE----DTSLGTQVLSVFATSKDIGTNAEITYL 3273
Query: 183 LR-GPYEKMFSIN-DSGHISIVDLSALNTSTIQ---LVVVATDTGNP 224
+R G + FSIN +G IS+ L AL+ T + LVV A D G P
Sbjct: 3274 IRSGNEQGKFSINPKTGGISV--LEALDYETCRRFYLVVEAKDGGTP 3318
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSISR-QGDISL 99
F + YSV LE+LPV V+ + T P DL +V+Y L NDY RF + + G I L
Sbjct: 935 FIPSSYSVKVLEDLPVGTVIAWLETQDP-DLGLGGQVRYSLVNDYNGRFEVDKASGAIRL 993
Query: 100 MQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP---- 155
+ LDYE + Y TV A D +S+ +V+ + L P+ P
Sbjct: 994 SKELDYEKQQFYNLTVRAKDKGRP------VSLSSVSFVEVEVVDVNENLHTPYFPDFAV 1047
Query: 156 LADLTPGSVIG----KVEAADGDKG--DRVTLSLR-GPYEKMFSIND-SGHISIVD-LSA 206
+ + S IG +V A D D G + S+R G F+I+D SG I+ D L
Sbjct: 1048 VGSVKENSRIGTSVLQVTAHDEDSGRDGEIQYSIRDGSGLGRFNIDDESGVITAADSLDR 1107
Query: 207 LNTSTIQLVVVATDTGNPPRQASV 230
T++ L V ATD G P +++
Sbjct: 1108 ETTASYWLTVYATDRGVVPLYSTI 1131
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 20/197 (10%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWL----SNDYGERFSIS-RQGDI 97
++F K+ Y VS E P VL+ + P L V+Y L +DY F I+ R G I
Sbjct: 373 VRFEKDVYEVSISEFSPPG-VLVAIVKVSPEPLDVEYKLLPGKDSDY---FKINPRSGLI 428
Query: 98 SLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
Q L+ ++ Y+ V +D A V I + + ND P F+ YE F+
Sbjct: 429 VTAQPLNTVKKEVYKLEV--SDKEGDAKAQVTIGIEDANDHTPEFQEALYETFVNE---- 482
Query: 158 DLTPGSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSIND-SGHISIVDLSALNTS--TI 212
+ G+ + V A+D DKG+ +T S+ F+IN +G IS + +S T
Sbjct: 483 SVRVGTNVLTVSASDKDKGENGYITYSIASLNLLPFAINQFTGVISTTEELDFESSPETY 542
Query: 213 QLVVVATDTGNPPRQAS 229
+ +V A+D G+P R S
Sbjct: 543 RFIVRASDWGSPYRHES 559
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 28/214 (13%)
Query: 53 SALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYG-ERFSISRQ-GDISLMQCLDYET 107
S EN + +L VT + RD ++Y + + G RF+I + G I+ LD ET
Sbjct: 1050 SVKENSRIGTSVLQVTAHDEDSGRDGEIQYSIRDGSGLGRFNIDDESGVITAADSLDRET 1109
Query: 108 EDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
SY TVYATD + ++ V I V +VND P P Y + D+ SV
Sbjct: 1110 TASYWLTVYATDRGVVPLYSTIEVYIEVEDVNDNAPLTSEPIYYPVVMENSPKDV---SV 1166
Query: 165 IGKVEAADGDKGDRVTLSLR---GPYEKMFSIN-DSGHISIVD--LSALNTSTIQLVVVA 218
I +++A D D G L+ R G + F+IN +G I+ L + L V
Sbjct: 1167 I-QIQAEDPDSGSNEKLTYRITSGNPQNFFAINIKTGLITTTSRKLDREQQAEHFLEVTV 1225
Query: 219 TDTGNPPRQASVPAIM----------HFPEAIVQ 242
TD G+ P+Q+++ ++ FPE + Q
Sbjct: 1226 TDGGSSPKQSTIWVVVQVLDENDNRPQFPEKVYQ 1259
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWL-SNDYGERFSIS-RQGDISLMQC 102
F K Y+ S E++ +N +L++ P + Y + D ++F+I G + ++
Sbjct: 2185 FDKPFYTASINEDITMNTPILSINATSPEGQGIIYLIIDGDPFQQFNIDFDTGVLKVISP 2244
Query: 103 LDYETEDSYRFTVYATDTLMTTSA--TVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
LDYE Y+ TV A+D L A TV++ V ++ND P F P Y L L
Sbjct: 2245 LDYEVTSVYKLTVRASDALTGARAEVTVDLLVDDINDNPPVFDQPTYNTTLSESSLI--- 2301
Query: 161 PGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHIS-----IVDLSALNTSTIQ-- 213
G+ + ++ + D D G+ + + + ++ D HI I+ L+ +Q
Sbjct: 2302 -GTPVLQLVSTDADSGNNKLVRYQ-IVQDTYNSTDYFHIDSSSGLILTARMLDHELVQHC 2359
Query: 214 -LVVVATDTGNPPRQASV 230
L V ATD G P + V
Sbjct: 2360 TLKVTATDNGFPSLSSEV 2377
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTV-TTNKP--RDLRVKYWL--SNDYGERFSIS-RQGDIS 98
F + +Y V+ E+ + +L+V T+K + + Y + N+ G +FSI+ + G IS
Sbjct: 3235 FERRDYLVTVPEDTSLGTQVLSVFATSKDIGTNAEITYLIRSGNEQG-KFSINPKTGGIS 3293
Query: 99 LMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQY 147
+++ LDYET + V A D ++T+ATV+I + +VND PRF Y
Sbjct: 3294 VLEALDYETCRRFYLVVEAKDGGTPALSTAATVSIDLTDVNDNPPRFSQDVY 3345
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 27/231 (11%)
Query: 27 ALATLIVSKAGTSLRELQFSKNEYSVSALEN-LPVNYVLLTVTTNKPRDLRVKYWLSNDY 85
A+ T++V +A S L F+++ YS S EN + V + + +KY + N
Sbjct: 1965 AMVTVMVKEAMDS--GLHFTQSFYSTSISENSTNITKVAIVNAVGNRLNEPLKYSILNP- 2021
Query: 86 GERFSI-SRQGDISLMQC-LDYETEDSYRFTVYAT---DTLMTTSATVNISVVNVNDWDP 140
G +F I S G I D E ++ Y V A+ D L V +++ +VND P
Sbjct: 2022 GNKFKIKSTSGVIQTTGVPFDREEQELYELVVEASRELDHLRVARVVVRVNIEDVNDNSP 2081
Query: 141 RFRYPQYELFLPHIPLA--DLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIN-D 195
F + LP+ D PG++I +V A D DKG VT L+ Y F IN +
Sbjct: 2082 VF------VGLPYYAAVQVDAEPGTLIYRVTAIDKDKGANGEVTYVLQDDY-GHFEINPN 2134
Query: 196 SGHISIVDLSALNTSTIQ--LVVVATDTGNPPRQASVPAIMHFPEAIVQQA 244
SG++ + + + S I + ++A D GNP S+ + P IV +A
Sbjct: 2135 SGNVILREAFNSDLSNIDYGVTILAKDGGNP----SLSTFVELPITIVNKA 2181
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 103 LDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPG 162
LD E +D Y + A+D L T A V ++V +VND P Y LP D+
Sbjct: 2989 LDREEQDIYFLNITASDGLFVTQAMVEVTVSDVNDNSPVCDQVAYSASLPE----DIPSN 3044
Query: 163 SVIGKVEAADGDKGDR--VTLSLRGPYEKMFSIN-DSGHISIVDLSALNTSTI---QLVV 216
+I KV A D D G + SL G F ++ +SG + L+ L+ + L+
Sbjct: 3045 KIILKVSAKDADIGSNGDIRYSLYGSGNNEFFLDPESGELKT--LAVLDRERVPVYNLIA 3102
Query: 217 VATDTG 222
ATD G
Sbjct: 3103 RATDGG 3108
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
G I+ + LDYE SY+ + AT+ M ++AT+++ +V+ ND P F + QY
Sbjct: 1720 GVITTRRALDYEHTSSYQLIIQATNMAGMASNATISVQIVDENDNPPVFLFSQYSG---- 1775
Query: 154 IPLADLTPGSVIGK--------VEAADGDKGDRVTLS---LRGPYEKMFSINDS-GHI-S 200
L++ P + I + + A D D L + +K F+++ S G I +
Sbjct: 1776 -SLSEAAPINSIVRSLDNSPLVIRATDADSNQNALLVYQIVESTAKKFFTVDSSTGAIRT 1834
Query: 201 IVDLSALNTSTIQLVVVATDTGNPPRQASVP 231
I +L + V D+GNP A P
Sbjct: 1835 IANLDHEAIAHFHFHVHVRDSGNPQLTAESP 1865
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 34/202 (16%)
Query: 45 FSKNEYSVSALENLPVNYVL--LTVTTNKPRDLRVKYWLSNDYGER--------FSISRQ 94
F++++YS + E+ + + L + N+ V++ + N GER F I ++
Sbjct: 2707 FTQSQYSFTITEDTSIGSTVDTLRILPNQ----SVRFSMVN--GERPENNKEGVFIIEQE 2760
Query: 95 -GDISLMQCLDYETEDSYRFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYEL 149
G I L + LD+E ++ F V AT L + + V++ V+++ND P F YE
Sbjct: 2761 TGAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSTYET 2820
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGP--YEKM---FSIN-DSGHISI 201
+ + + G+ + +V A D D G +VT SL EK+ F+I+ ++G IS
Sbjct: 2821 II----MEGMPVGTKLAQVRAIDMDWGANGQVTYSLHSDSHLEKVIEAFNIDSNTGWIST 2876
Query: 202 V-DLSALNTSTIQLVVVATDTG 222
+ DL VVA+D G
Sbjct: 2877 LKDLDHETDPAFSFFVVASDLG 2898
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYG-----ERFSI-SRQG 95
F + Y +E +PV L V + + +V Y L +D E F+I S G
Sbjct: 2813 FETSTYETIIMEGMPVGTKLAQVRAIDMDWGANGQVTYSLHSDSHLEKVIEAFNIDSNTG 2872
Query: 96 DISLMQCLDYETEDSYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
IS ++ LD+ET+ ++ F V A+D +++ A V++ V ++ND P F +E++
Sbjct: 2873 WISTLKDLDHETDPAFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVF---AHEVYR 2929
Query: 152 PHIPLADLTPGSVIGKVEAADGD 174
++ +D PG V+ + D D
Sbjct: 2930 GNVKESD-PPGEVVAVLSTLDKD 2951
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Query: 44 QFSKNEYSVSALEN-LPVNYVLLTVTTNKPRDLRVKYWLSNDYG----ERFSIS-RQGDI 97
+FS+ Y V+ E+ LP +L T++ ++ Y + + +F + G +
Sbjct: 1458 EFSQPHYDVTISEDVLPDTEILQIEATDRDEKHKLSYTIHSSIDAVSMRKFRMDPSTGVL 1517
Query: 98 SLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
+ LD+E +D + + D A V ++V + ND P F P YE +
Sbjct: 1518 YTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSPYFTNPLYEASV--- 1574
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLSLR---GPYEKMFSINDS-GHISIV---DLSAL 207
GSV+ +V A D DKG+ L G F I G I+I D++A+
Sbjct: 1575 -FESAALGSVVLQVTALDKDKGENAELIYSIEAGNTGNTFKIEPVLGIITISKEPDMAAM 1633
Query: 208 NTSTIQLVVVATDTGNPPRQASV 230
L V TD G+PP A+
Sbjct: 1634 --GQFVLSVKVTDQGSPPMSATA 1654
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
G I + + LD E Y +V TD V I V++ ND P F P Y++ +
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNIAVTQVFIKVLDNNDNGPEFSQPHYDVTISE- 1470
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLSLR 184
D+ P + I ++EA D D+ +++ ++
Sbjct: 1471 ---DVLPDTEILQIEATDRDEKHKLSYTIH 1497
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSAL 207
E+F+ + + D PG VIGK+ A D D D +T +L+ + +F +N S I+ L L
Sbjct: 3554 EIFI--VTMEDDFPGGVIGKIHATDQDMYDVLTFALKSEQKSLFKVN-SHDGKIIALGGL 3610
Query: 208 NTSTIQLVVVATD 220
++ L V +D
Sbjct: 3611 DSGKYVLNVSVSD 3623
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 50 YSVSALENLPVNYVLLTVTTNKPR-----DLRVKYWLSNDYGERFSISRQGDISLMQCLD 104
YS S E++P N ++L V+ D+R + S + E F G++ + LD
Sbjct: 3033 YSASLPEDIPSNKIILKVSAKDADIGSNGDIRYSLYGSGN-NEFFLDPESGELKTLAVLD 3091
Query: 105 YETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGS 163
E Y ATD S++V + + +VND P F Y + + +
Sbjct: 3092 RERVPVYNLIARATDGGGRFCSSSVLLLLEDVNDNPPVFSSNHYTACV----YENTATKA 3147
Query: 164 VIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISIVD--LSALNTSTIQLVVVAT 219
++ +V+A D D G +V SL +FSI+ S + +++ L S+ + V AT
Sbjct: 3148 LLTRVQAMDPDVGINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSYNISVRAT 3207
Query: 220 D 220
D
Sbjct: 3208 D 3208
>sp|P58365|CAD23_RAT Cadherin-23 OS=Rattus norvegicus GN=Cdh23 PE=2 SV=1
Length = 3317
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRD---LRVKYWLSNDYGERFSIS-RQGDISLM 100
F + Y + E++ V V+L VT ++Y L + G +F+I+ GDI ++
Sbjct: 2400 FDQLSYQEAVFEDVAVGTVILRVTATDADSGNFALIEYSLVDGEG-KFAINPNTGDIYVL 2458
Query: 101 QCLDYETEDSYRFTVYATDT-------LMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
LD E +D Y T A D S V I V++VND P+F PQ+ +
Sbjct: 2459 SSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIRVLDVNDCRPQFSKPQFSTSV-- 2516
Query: 154 IPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIVDLSALNTS 210
+ G+ + + A D D+G ++T SL GP + FS++ DSG ++ +
Sbjct: 2517 --YENEPAGTSVITMLATDQDEGSNGQLTYSLEGPGMEAFSVDMDSGLVT-TQRPLQSYE 2573
Query: 211 TIQLVVVATDTGNPP 225
L VVATD G PP
Sbjct: 2574 RFNLTVVATDGGEPP 2588
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 45 FSKNEYSVSALENLPVNYVLLTV--TTNKPRDL-RVKYWLSNDYGERFSISRQ-GDISLM 100
FS+ Y+VS EN+ V +LTV T N V Y+ S+D +RFS+ + G I L+
Sbjct: 458 FSQPLYNVSLYENITVGTSVLTVLATDNDVGTFGEVNYFFSDD-PDRFSLDKDTGLIMLI 516
Query: 101 QCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFL----PHIP 155
LDYE + TV A D T+ V I+V++VND P F+ Y L P +
Sbjct: 517 ARLDYELIQRFTLTVIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSV- 575
Query: 156 LADLTPGSVIGKVEAADGDKGDR-------VTLSLRGPYEKMFSINDSGHISI---VDLS 205
+ + ++ A D D V S G Y + G IS+ +D
Sbjct: 576 -------TQLVRLRATDEDSPPNNLITYSIVNASAFGSYFDISVYEGYGVISVSRPLDYE 628
Query: 206 ALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
+ I L V+A D GNPP ++VP +
Sbjct: 629 QIPNGLIYLTVMAKDAGNPPLYSTVPVTIE 658
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 44/218 (20%)
Query: 45 FSKNEYSVSALENLPVNY-VLLTVTTNKPRDLRVKYWLSNDYGE-----------RFSI- 91
FSK Y VS +EN+ VL T+ R S +YG+ +F I
Sbjct: 669 FSKPAYFVSVVENIMAGATVLFLNATDLDR--------SREYGQESIIYSLEGSSQFRIN 720
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATD-----TLMTTSATVNISVVNVNDWDPRFRYPQ 146
+R G+I+ LD ET+ Y V A D T ATVN++++++ND P ++
Sbjct: 721 ARSGEITTTSLLDRETKAEYILIVRAVDGGVGHNQKTGIATVNVTLLDINDNHPTWKDAP 780
Query: 147 YELFLPHIPLADLT-PGSVIGKVEAADGDKGDRVTL--SLRGPYEKMFSIND-SGHISI- 201
Y +I L ++T P S + V A D D G TL S++ P K +S+N +G I
Sbjct: 781 Y-----YINLVEMTPPDSDVTTVVAVDPDLGKNGTLVYSIQPP-NKFYSLNSTTGKIRTT 834
Query: 202 -VDLSALNTSTIQ------LVVVATDTGNPPRQASVPA 232
V L N ++ ++V TD G PP +A+ A
Sbjct: 835 HVMLDRENPDPVEAELMRKIIVSVTDCGRPPLKATSSA 872
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 40/217 (18%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVT-TNKPRDL--RVKYWLSNDYGERFSIS------RQG 95
FS Y+V LEN P + +L +T T++ L + Y + +RF I R G
Sbjct: 2067 FSPPAYTVHLLENCPPGFSVLQITATDEDSGLNGELVYRIEAGAQDRFLIHPVTGVIRVG 2126
Query: 96 DISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
+ + +D E ++SYR TV ATD ++ +ATV I + ++ND P F P + +
Sbjct: 2127 NAT----IDREEQESYRLTVVATDRGTVPLSGTATVTILIDDINDSRPEFLNPIQTVSV- 2181
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRV------------TLSLRGPYEKMFSIN-DSGHI 199
L PG+VI V A D D ++ T L E F++N ++G
Sbjct: 2182 ---LESTEPGTVIANVTAIDLDLNPKLEYHILSIVAKDDTDRLVPDQEDAFAVNINTG-- 2236
Query: 200 SIVDLSALN-----TSTIQLVVVATDTGNPPRQASVP 231
S++ S LN T + L V+ + P R SVP
Sbjct: 2237 SVIVKSPLNRELVATYEVTLSVIDNASDLPERSVSVP 2273
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 23/203 (11%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDL-----RVKYWLSNDYGERFSISR-QGD 96
+QFS Y +ENL + ++ V +L R + S F I G
Sbjct: 1309 VQFSNASYEAVIMENLALGTEIVRVQAYSIDNLNQITYRFDAYTSAQAKALFKIDAITGV 1368
Query: 97 ISLMQCLDYETEDSYRFTVYATDTLMTTSATVNI--SVVNVNDWDPRFRYPQYELFLPHI 154
I++ +D E D Y TV A D +TV + +V++ ND PRF + +
Sbjct: 1369 ITVKGLVDREKGDFYTLTVVADDGGPKVDSTVKVYVTVLDENDNSPRFDFTSDSAI--SV 1426
Query: 155 PLADLTPGSVIGKVEAADGDKGD--RVTLSLR-----GPYEKMFSINDSGHISI---VDL 204
P D G + V+A D D G +V SL G +E + S + G + + +D
Sbjct: 1427 P-EDCPVGQRVATVKARDPDAGSNGQVVFSLASGNIAGAFEIITSNDSIGEVFVAKPLDR 1485
Query: 205 SALNTSTIQLVVVATDTGNPPRQ 227
L+ ++ +VA+D G PPR+
Sbjct: 1486 EELDHYILK--IVASDRGTPPRK 1506
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 29/137 (21%)
Query: 65 LTVTTNKPRDLRVKYWLS---NDYG---------------ERFSIS-RQGDISLMQCLDY 105
++V+ + PR+ RV WL+ ND G +FS+ R + + LD
Sbjct: 1000 VSVSEDVPREFRV-VWLNCTDNDVGLNAELSYFITAGNVDGKFSVGYRDAVVRTVVGLDR 1058
Query: 106 ETEDSYRFTVYATDTL-----MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
ET +Y + A D + T +ATV ++V++VND P F YE +P D+
Sbjct: 1059 ETTAAYTLVLEAIDNVPVGKRRTGTATVFVTVLDVNDNRPIFLQSSYEASVPE----DIP 1114
Query: 161 PGSVIGKVEAADGDKGD 177
G I +++A D D+G+
Sbjct: 1115 EGHSIVQLKATDADEGE 1131
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVL----LTVTTNKPRDLRVKYWLSNDYGERF-----SISRQ 94
+F+ +EYSV+ E V + L V ++ + + +L + F S+ +
Sbjct: 347 EFNSSEYSVAITELAQVGFALPLFIQVVDKDEGLNSMFEVYLVGNNSHHFIISPTSVQGK 406
Query: 95 GDISLMQC--LDYETEDSYRFTVYATDTL--MTTSATVNISVVNVNDWDPRFRYPQYELF 150
DI + LDYET D Y F ++A +++ A V I+++N ND P F P Y +
Sbjct: 407 ADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNVS 466
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISIVDLSALN 208
L ++T G+ + V A D D G V ++ D+G I ++ + L+
Sbjct: 467 L----YENITVGTSVLTVLATDNDVGTFGEVNYFFSDDPDRFSLDKDTGLIMLI--ARLD 520
Query: 209 TSTIQ---LVVVATDTG 222
IQ L V+A D G
Sbjct: 521 YELIQRFTLTVIARDGG 537
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 31 LIVSKAGTSLRELQFSKNEYSVSAL---ENLPVNYVLLTVTTNKPRDLR---VKYWLSND 84
++VS + + L F N + + L E+ PV +VT RD+ + + +S +
Sbjct: 16 MLVSGSWGQVNRLPFFTNHFFDTYLLISEDTPVGS---SVTQLLARDMDNDPLVFGVSGE 72
Query: 85 YGERFSISR--QGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRF 142
RF G + L Q LD ET+ + +D + VNI V +VND P F
Sbjct: 73 EASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTF 132
Query: 143 RYPQYELFLPHIPLADLTP-GSVIGKVEAADGD--KGDRVTLSLRGPYEKMFSINDSGHI 199
Y + +P + TP G+ I V A D D G V S + P + F+I+ + I
Sbjct: 133 HNQPYSVRIP-----ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP-SQFFAIDSARGI 186
Query: 200 SIV--DLSALNTSTIQLVVVATD 220
V +L T QL V ATD
Sbjct: 187 VTVIRELDYEVTQAYQLTVNATD 209
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 118/285 (41%), Gaps = 59/285 (20%)
Query: 4 EDDFL-QPITLVVRA----IQYDNQDRYALATLIVSK-----AGTS-----LRELQFSKN 48
+D FL P+T V+R I + Q+ Y L + + +GT+ + ++ S+
Sbjct: 2111 QDRFLIHPVTGVIRVGNATIDREEQESYRLTVVATDRGTVPLSGTATVTILIDDINDSRP 2170
Query: 49 EY-----SVSALENLPVNYVLLTVTT-----NKPRDLRVKYWLSNDYGER--------FS 90
E+ +VS LE+ V+ VT N + + ++ D +R F+
Sbjct: 2171 EFLNPIQTVSVLESTEPGTVIANVTAIDLDLNPKLEYHILSIVAKDDTDRLVPDQEDAFA 2230
Query: 91 IS-RQGDISLMQCLDYETEDSYRFTVYATD--------TLMTTSATVNISVVNVNDWDPR 141
++ G + + L+ E +Y T+ D ++ +A + +++++VND P+
Sbjct: 2231 VNINTGSVIVKSPLNRELVATYEVTLSVIDNASDLPERSVSVPNAKLTVNILDVNDNTPQ 2290
Query: 142 FRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISI 201
F+ P + L TPG+ + V A D DKG ++ + + G++ +
Sbjct: 2291 FK-PFGITYYTERVLEGATPGTTLIAVAAVDPDKGLNGLITY-----TLLDLIPPGYVQL 2344
Query: 202 VDLSA-----------LNTSTIQLVVVATDTGNPPRQASVPAIMH 235
D SA + V A+D G+PPR A +P +
Sbjct: 2345 EDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLE 2389
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 12 TLVVRAIQYDN----QDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTV 67
TLV+ AI DN + R AT+ V+ + F ++ Y S E++P + ++ +
Sbjct: 1065 TLVLEAI--DNVPVGKRRTGTATVFVTVLDVNDNRPIFLQSSYEASVPEDIPEGHSIVQL 1122
Query: 68 -TTNKPRDLRVKYW---LSNDYGERFSISRQGDISLM--QCLDYETEDSYRFTVYATD-- 119
T+ + W L ++G F + + + + LD E S+ A +
Sbjct: 1123 KATDADEGEFGRVWYRILHGNHGNNFRLHVSSGLLVRGPRPLDRERNSSHVLMAEAYNHD 1182
Query: 120 -TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTP-GSVIGKVEAADGDKGD 177
M +S V + V +VND P F QY + L + G+ + V A D D GD
Sbjct: 1183 LGPMRSSVRVIVYVEDVNDEAPVFTQQQYN----RLGLRETAGIGTSVIVVRATDRDTGD 1238
Query: 178 RVTLSLR--GPYEKMFSINDS-GHISIVDLSALNTSTIQLVVVATDTGNPP 225
++ R E F I++S G I VD T T L+ V+ G PP
Sbjct: 1239 GGLVNYRILSGAEGKFEIDESTGLIVTVDYLDYETKTSYLMNVSATDGAPP 1289
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 123 TTSATVNISVVNVNDWDPRFRYPQYELFLPHIP-LADLTPGSV-IGKVEAADGDKGDRVT 180
T+SATV ++++++ND DP F+ LP + + + TP V + +V A D D+G
Sbjct: 869 TSSATVFVNLLDLNDNDPTFQN------LPFVAEVLEGTPAGVSVYQVVAIDLDEGLNGL 922
Query: 181 LSLR---GPYEKMFSINDSGHI--SIVDLSALNTSTIQLVVVATDTGNPPRQAS 229
+S R G F IN + + + +L + QL VVA+D G P + ++
Sbjct: 923 VSYRMQVGMPRMDFVINSTSGVVTTTAELDRERIAEYQLRVVASDAGTPTKSST 976
>sp|Q71M42|PC11X_PANTR Protocadherin-11 X-linked OS=Pan troglodytes GN=PCDH11X PE=3 SV=1
Length = 1347
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQ 101
F+ NEY+ ENLP + L+TVT D D + F+I Q G I
Sbjct: 570 FTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNI 629
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP----QYELFLPHI 154
D E ++SY F V A D ++SA V I+VV+VND P F P YEL LP
Sbjct: 630 SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNYSYELVLP-- 687
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
PG+V+ +V A D D G + + G +F+I+ ++G+I++++ +
Sbjct: 688 ---STNPGTVVFQVMAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDL 744
Query: 211 TIQLVVV-ATDTGNP 224
+ V+V A D G P
Sbjct: 745 GLHRVLVKANDLGQP 759
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 76 RVKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNIS 131
+ Y L D FS+ R+ G +++++ LD E ED Y FT+ A D +T++ TV +S
Sbjct: 500 EINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS 559
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSL 183
+++ ND P F + +Y ++P +L +G + D D GD VTLS+
Sbjct: 560 IIDQNDNSPVFTHNEYNFYVPE----NLPRHGTVGLITVTDPDYGDNSAVTLSI 609
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +D+Y V D +++A + +SV + ND P F+ + E+ +P +
Sbjct: 207 LDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE----NA 262
Query: 160 TPGSVIGKVEAADGDKGDRVTLS------LRGPYEKMFSIN-DSGHISIVD-LSALNTST 211
G+ + ++ A D D G+ + + ++F +N +G I+I + L T
Sbjct: 263 PVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPN 322
Query: 212 IQLVVVATDTGNPPRQASV 230
+L+V+A+D G P +A V
Sbjct: 323 HKLLVLASDGGLMPARAMV 341
>sp|Q6WYY1|PC11X_PANPA Protocadherin-11 X-linked OS=Pan paniscus GN=PCDH11X PE=3 SV=1
Length = 1347
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQ 101
F+ NEY+ ENLP + L+TVT D D + F+I Q G I
Sbjct: 570 FTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNI 629
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP----QYELFLPHI 154
D E ++SY F V A D ++SA V I+VV+VND P F P YEL LP
Sbjct: 630 SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNYSYELVLP-- 687
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
PG+V+ +V A D D G + + G +F+I+ ++G+I++++ +
Sbjct: 688 ---STNPGTVVFQVMAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDL 744
Query: 211 TIQLVVV-ATDTGNP 224
+ V+V A D G P
Sbjct: 745 GLHRVLVKANDLGQP 759
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 76 RVKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNIS 131
+ Y L D FS+ R+ G +++++ LD E ED Y FT+ A D +T++ TV +S
Sbjct: 500 EINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS 559
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSL 183
+++ ND P F + +Y ++P +L +G + D D GD VTLS+
Sbjct: 560 IIDQNDNSPVFTHNEYNFYVPE----NLPRHGTVGLITVTDPDYGDNSAVTLSI 609
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +D+Y V D +++A + +SV + ND P F+ + E+ +P +
Sbjct: 207 LDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE----NA 262
Query: 160 TPGSVIGKVEAADGDKGDRVTLS------LRGPYEKMFSIN-DSGHISIVD-LSALNTST 211
G+ + ++ A D D G+ + + ++F +N +G I+I + L T
Sbjct: 263 PVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPN 322
Query: 212 IQLVVVATDTGNPPRQASV 230
+L+V+A+D G P +A V
Sbjct: 323 HKLLVLASDGGLMPARAMV 341
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2
Length = 4349
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER---FSISRQ-GDIS 98
L F + YS + +E PVN+++ ++ L +W + G++ F I + G I
Sbjct: 1347 LAFDETYYSFTVMETDPVNHMVGVISVEGRPGL---FWFNISGGDKDMDFDIEKTTGSIV 1403
Query: 99 LMQCLDYETEDSYRFTVYATDTLMTTSATVNISVV-NVNDWDPRFRYPQYELFLPHIPLA 157
+ + LD +Y TV TD T + V+I ++ N+N P+F +YE+ +P
Sbjct: 1404 IARPLDTRRRSNYNLTVEVTDGSRTIATQVHIFMIANINHHRPQFLETRYEVRVPQ---- 1459
Query: 158 DLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVV 217
D PG + +V+A D DKG + ++ G D G S+ L +S + + V
Sbjct: 1460 DTVPGVELLRVQAIDQDKGKSLIYTIHGS-------QDPGSASLFQLDP--SSGVLVTVG 1510
Query: 218 ATDTGNPPRQASV 230
D G+ P Q ++
Sbjct: 1511 KLDLGSGPSQHTL 1523
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYG----ERFSI-SRQGD 96
F + Y EN+PV ++ VT + RD +V Y LS D G E F+I S G
Sbjct: 2797 FEADPYKAVLTENMPVGTSVIQVTAIDKDTGRDGQVSYRLSADPGSNVHELFAIDSESGW 2856
Query: 97 ISLMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
I+ +Q LD ET +Y F V A D +++ A V +S+ + ND PRF +Y +
Sbjct: 2857 ITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDENDNAPRFASEEYRGSV- 2915
Query: 153 HIPLADLTPGSVIGKVEAADGD 174
+ + PG ++ ++ D D
Sbjct: 2916 ---VENSEPGELVATLKTLDAD 2934
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 86/201 (42%), Gaps = 20/201 (9%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT------NKPRDLRVKYWLSNDYGERFSISRQGD- 96
+F+ EY S +EN ++ T+ T + R + Y D +F IS+ GD
Sbjct: 2905 RFASEEYRGSVVENSEPGELVATLKTLDADISEQNRQVTC-YITEGDPLGQFGISQVGDE 2963
Query: 97 --ISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
IS + LD E Y V A+D S TV I V++VND P+ +L
Sbjct: 2964 WRISSRKTLDREHTAKYLLRVTASDGKFQASVTVEIFVLDVNDNSPQCS----QLLYTGK 3019
Query: 155 PLADLTPGSVIGKVEAA--DGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTS-- 210
D+ PG I KV A D D ++T SL GP F + D + L+AL+
Sbjct: 3020 VHEDVFPGHFILKVSATDLDTDTNAQITYSLHGPGAHEFKL-DPHTGELTTLTALDRERK 3078
Query: 211 -TIQLVVVATDTGNPPRQASV 230
LV ATD G QA +
Sbjct: 3079 DVFNLVAKATDGGGRSCQADI 3099
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 21/242 (8%)
Query: 10 PITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT 69
P TL V+A + + LAT+I+ + FSK+EY V E++PV +L V+
Sbjct: 1625 PHTLTVKAEDQGSPQWHDLATVIIHVYPSDRSAPIFSKSEYFVEIPESIPVGSPILLVSA 1684
Query: 70 NKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMT-TSATV 128
P ++ + N G S G IS + LD+E SY+ + ++ T V
Sbjct: 1685 MSPSEVTYELREGNKDGVFSMNSYSGLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMV 1744
Query: 129 NISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK------VEAADGDKGDRVTLS 182
+ +++ ND P F F+ I A ++ K + A+D DK L
Sbjct: 1745 VVDIIDENDNAPMFL---KSTFVGQISEAAPLYSMIMDKNNNPFVIHASDSDKEANSLLV 1801
Query: 183 ---LRGPYEKMFSINDS-GHISIV-DLSALNTSTIQLVVVATDTGNP----PRQASVPAI 233
L K F I+ S G ++IV ++ + + Q V D G+P PR A V I
Sbjct: 1802 YKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQV--I 1859
Query: 234 MH 235
+H
Sbjct: 1860 IH 1861
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELF 150
G +S Q LD E +D + V D +L +TS V + +++VND P F + + +
Sbjct: 1192 GLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVV-VGILDVNDNPPIFSHKLFNVR 1250
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIN-DSGHISIVDLSAL 207
LP L+ ++PG V ++ A+D D+G RVT S+ E+ FSI+ +G +S
Sbjct: 1251 LPER-LSPVSPGPVY-RLVASDLDEGLNGRVTYSIEDSDEEAFSIDLVTGVVSSSSTFTA 1308
Query: 208 NTSTIQLVVVATDTGNPPRQASV 230
I L + ATD+G PP ASV
Sbjct: 1309 GEYNI-LTIKATDSGQPPLSASV 1330
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 28 LATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWL--S 82
+ T++V+ + QF ++ YS LEN V V+LTV+ + P + + Y L
Sbjct: 3304 VTTVMVNITDVNEHRPQFPQDPYSTRVLENALVGDVILTVSATDEDGPLNSDITYSLIGG 3363
Query: 83 NDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWD 139
N G ++G++ + + LD E SY + ATD+ + + I V +VND
Sbjct: 3364 NQLGHFTIHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNP 3423
Query: 140 PRFRYPQYELFLPHIPLADLTP-GSVIGKVEAADGDKGD-------RVTLSLRGPYEKMF 191
PRF Y + + +P GS + ++ +D D + R+T +G F
Sbjct: 3424 PRFFQLNYS-----TTVQENSPIGSKVLQLILSDPDSPENGPPYSFRIT---KGNNGSAF 3475
Query: 192 SINDSGHISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPE 238
+ G + + LS QL + A+D+G PP + +H E
Sbjct: 3476 RVTPDGWLVTAEGLSRRAQEWYQLQIQASDSGIPPLSSLTSVRVHVTE 3523
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 15/192 (7%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSIS--RQGDISLMQC 102
F Y V EN+ + +L P LR+ Y + + + + G +++
Sbjct: 2171 FQSPYYKVRVPENITLYTPILHTQARSPEGLRLIYNIVEEEPLMLFTTDFKTGVLTVTGP 2230
Query: 103 LDYETEDSYRFTVYATDTLMT--TSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
LDYE++ + FTV ATDT + + ATV + V +VND P F Y + L T
Sbjct: 2231 LDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSISE-GLPAQT 2289
Query: 161 PGSVIGKVEAADGDKGDRVTLSLR-----GPYEKMFSINDS-GHISIV-DLSALNTSTIQ 213
P + ++ A+D D G +S + K F IN S G +S V +L
Sbjct: 2290 P---VIQLLASDQDSGRNRDVSYQIVEDGSDVSKFFQINGSTGEMSTVQELDYEAQQHFH 2346
Query: 214 LVVVATDTGNPP 225
+ V A D G+PP
Sbjct: 2347 VKVRAMDKGDPP 2358
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKP--RDL-RVKYW-LSNDYGERFSI-SRQGDIS 98
+F + +Y + E +++L V P RD R++Y LS + F I S G IS
Sbjct: 2378 EFRQPQYEANVSELATCGHLVLKVQAIDPDSRDTSRLEYLILSGNQDRHFFINSSSGIIS 2437
Query: 99 LMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
+ + SY V A+D + + V I+ N N + P F+ YE A+
Sbjct: 2438 MFNLCKKHLDSSYNLRVGASDGVFRATVPVYINTTNANKYSPEFQQHLYE--------AE 2489
Query: 159 LTPGSVIG----KVEAADGDKGDRVTLS---LRGPYEKMFSINDSGHISIVDLSALNTST 211
L +++G + A D D G T+ + + FSIN +G I+ + ST
Sbjct: 2490 LAENAMVGTKVIDLLAIDKDSGPYGTIDYTIINKLASEKFSINPNGQIATLQKLDRENST 2549
Query: 212 ---IQLVVVATDTG 222
I + V+A D G
Sbjct: 2550 ERVIAIKVMARDGG 2563
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 51 SVSALENLPVNYVLLTVTTNKPR---DLRVKYWLSNDYGER-FSISRQ-GDISLMQCLDY 105
S+ LE++P+N L + P + ++ Y +++ E F I + G +++ LDY
Sbjct: 721 SIDVLESVPINTPLARLAATDPDAGFNGKLVYVIADGNEEGCFDIELETGLLTVAAPLDY 780
Query: 106 ETEDSYRFTVYATDTLMTTSATVNISVVNVNDWD---PRFRYPQYELFLPHIPLADLTPG 162
E + Y V D ++ + VNV DW+ PRF Y+L + D G
Sbjct: 781 EATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTISE----DTEVG 836
Query: 163 SVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN 194
+ I ++ D D D RV +L P EK FS++
Sbjct: 837 TTIAELTTKDADSEDNGRVRYTLLSPTEK-FSLH 869
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 18/229 (7%)
Query: 10 PITLVVRAIQYDNQDRYA-LATLIVSKAGTSLRELQFSKNEYSVSALENLPVN-YVLLTV 67
P+ L VRA + L T+ VS G F E+SV E+ P VL
Sbjct: 3182 PLELTVRASDLGTPIPLSTLGTVTVSVVGLEDYLPVFLNTEHSVQVPEDAPPGTEVLQLA 3241
Query: 68 TTNKPRDLRVKYWL--SNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDTLMTT 124
T +P + Y + N+ G RF + +R G + + LD+ET Y ++ + ++
Sbjct: 3242 TLTRPGAEKTGYRVVSGNEQG-RFRLDARTGILYVNASLDFETSPKYFLSIECSRKSSSS 3300
Query: 125 S---ATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDK--GDRV 179
TV +++ +VN+ P+F Y + L + G VI V A D D +
Sbjct: 3301 LSDVTTVMVNITDVNEHRPQFPQDPYSTRV----LENALVGDVILTVSATDEDGPLNSDI 3356
Query: 180 TLSLRGPYE-KMFSIN-DSGHISIVD-LSALNTSTIQLVVVATDTGNPP 225
T SL G + F+I+ G + + L S+ L + ATD+G PP
Sbjct: 3357 TYSLIGGNQLGHFTIHPKKGELQVAKALDREQASSYSLKLRATDSGQPP 3405
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT-----LMTTSATVNISVVNVNDWDPRFRYPQYEL 149
G ++++ +DYE+ S++F VY D A V I V +VND PRF YE+
Sbjct: 1820 GTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVIIHVRDVNDSPPRFSEQIYEV 1879
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR-GPYEKMFSIND-SGHISIVDLSAL 207
+ + + PG + V A+D D V S++ G ++ +I+ +G IS+++ + L
Sbjct: 1880 AI----VGPIHPGMELLMVRASDEDS--EVNYSIKTGNADEAVTIHPVTGSISVLNPAFL 1933
Query: 208 NTSTIQLVVVATD 220
S +L + A+D
Sbjct: 1934 GLSR-KLTIRASD 1945
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 41 RELQFSKNEYSVSALENLPVN--YVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDIS 98
+ LQF ++ Y + ENL V+L N D + Y+L N + G +
Sbjct: 1964 KSLQFDQDVYWAAVKENLQDRKALVILGAQGNHLNDT-LSYFLLNGTDMFHMVQSAGVLQ 2022
Query: 99 LMQ-CLDYETEDSYRFTVYATDTLM---TTSATVNISVVNVNDWDPRFRY-PQYELFLPH 153
D E +D++ V D V +S+ +VND P+F++ P Y +
Sbjct: 2023 TRGVAFDREQQDTHELAVEVRDNRTPQRVAQGLVRVSIEDVNDNPPKFKHLPYYTI---- 2078
Query: 154 IPLADLT-PGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDS-GHISI---VDLSA 206
+ D T PG V+ +V A D D G VT Y F I+ G IS+ D A
Sbjct: 2079 --IQDGTEPGDVLFQVSATDEDLGTNGAVTYEFAEDY-TYFRIDPYLGDISLKKPFDYQA 2135
Query: 207 LNTSTIQLVVVATDTGNPPRQA 228
LN L V+A D G P Q+
Sbjct: 2136 LN--KYHLKVIARDGGTPSLQS 2155
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 23/197 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRD------LRVKYWLSNDYGERFSISRQ-GD 96
+FS+ Y+ SA E+LP + V +D +R SN G FS+ G
Sbjct: 2690 KFSEPLYTFSAPEDLPEGSEIGIVKAVAAQDPVIYSLVRGTTPESNKDG-VFSLDPDTGV 2748
Query: 97 ISLMQCLDYETEDSYRFTVYA---TDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
I + + +D+E+ Y+ V A +T + + +VNI V +VND P F Y+ L
Sbjct: 2749 IKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEADPYKAVL-- 2806
Query: 154 IPLADLTPGSVIGKVEAADGDKGDRVTLSLR------GPYEKMFSIN-DSGHISIV-DLS 205
++ G+ + +V A D D G +S R ++F+I+ +SG I+ + +L
Sbjct: 2807 --TENMPVGTSVIQVTAIDKDTGRDGQVSYRLSADPGSNVHELFAIDSESGWITTLQELD 2864
Query: 206 ALNTSTIQLVVVATDTG 222
T VVA D G
Sbjct: 2865 CETCQTYHFHVVAYDHG 2881
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSISR-QGDISL 99
+F Y ++ E+ V + +TT + + RV+Y L + E+FS+ G++ +
Sbjct: 819 RFPPGGYQLTISEDTEVGTTIAELTTKDADSEDNGRVRYTLLSPT-EKFSLHPLTGELVV 877
Query: 100 MQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
LD E+E Y V A D L + + + I++ +VND P+ L +P
Sbjct: 878 TGHLDRESEPRYILKVEARDQPSKGHQLFSVTDLI-ITLEDVNDNSPQCITEHNRLKVPE 936
Query: 154 IPLADLTPGSVIGKVEAADGDKG 176
DL PG+V+ ++A+D D G
Sbjct: 937 ----DLPPGTVLTFLDASDPDLG 955
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 103 LDYETEDSYRFTVYATDTLMTTSA--TVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
L+ E DSY + AT+ + A V + +++ ND P F P Y + + D+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISE----DMP 162
Query: 161 PGSVIGKVEAADGDKG 176
S I KV A D D G
Sbjct: 163 LKSPICKVTATDADLG 178
>sp|Q9R100|CAD17_MOUSE Cadherin-17 OS=Mus musculus GN=Cdh17 PE=1 SV=1
Length = 827
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 43/294 (14%)
Query: 14 VVRAIQYDNQDRYALATLIVSKAGTSLRELQ-FSKNEYSVSALENLPVNYVLLTVTTNKP 72
+V+ I+Y N +A LIV T + E+ F + + + E+ V + VT P
Sbjct: 538 LVKGIEY-NASSFASFELIV----TDVNEVPVFPQRIFQANVSEDAAVGSRVGNVTARDP 592
Query: 73 RDLRVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATV 128
L V Y L + I S G+I LD ETE YR V AT+ + ++++A
Sbjct: 593 EGLTVSYSLKGNMRGWLKIDSVTGEIFSAAPLDRETESVYRVQVVATEVGGSSLSSTADF 652
Query: 129 NISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYE 188
++ + +VND PR LF H PL+ PGS+I E D D+ SLR P +
Sbjct: 653 HLVLTDVNDNPPRLAKDYTGLFFCH-PLS--APGSLI--FEVTDDDQ-----QSLRRP-K 701
Query: 189 KMFSINDSGHISIVDLSALNTSTIQLVVVAT--------------DTGNPPRQASVPAIM 234
F++ G S ++S +N + +L T D G PP + +V +
Sbjct: 702 FTFALGREGLQSDWEVSKINGTHARLSTRHTRFEEQVYNIPIRINDGGQPPMEGTVFLPV 761
Query: 235 HFPEAIVQQASSKLNSGTSS---TVLIILGVVL---IVLGFVIILLILYIHKNK 282
F + + + S +G TV + +G++L +V+G ++ ++ + + K+K
Sbjct: 762 TFCQCV--EGSCFRPAGRQDGIPTVGMAVGILLTTFLVIGIILAVVFIRMRKDK 813
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 89 FSISRQGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP 145
FSI ++G+I + Q LD E ++S+ F A D + + + V+++ND P P
Sbjct: 283 FSIDQEGNIYVTQALDREEKNSHVFFATAKDENGKPLAYPLEIYVKVIDINDNPPTCLSP 342
Query: 146 --QYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLR 184
+E+ + PL G+ IG EA D D+ + + L+
Sbjct: 343 VTVFEV-QENEPL-----GNSIGIFEAHDMDEANNINSILK 377
>sp|Q8UVJ7|CDHR1_CHICK Cadherin-related family member 1 OS=Gallus gallus GN=CDHR1 PE=2
SV=1
Length = 865
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Query: 52 VSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER--FSISRQ-GDISLMQCLDYETE 108
+S E+ PV + T+ P V Y L+ + G R FS+ G+++L++ LD E E
Sbjct: 44 LSLSEDTPVGSHVYTLNGTDPEGDPVTYGLTYEAGSRRYFSVDGNLGNVTLIEELDREKE 103
Query: 109 DSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
D V +D L T S V I V++ ND P F Y + +P + GS I K+
Sbjct: 104 DEIEVIVSISDGLSTVSEKVRILVMDANDESPEFINTPYIVQVPE----NSPSGSSIFKI 159
Query: 169 EAADGD--KGDRVTLSLRGPYEKMFSIN-DSGHISI---VDLSALNTSTIQLVVVATDTG 222
EA D D G +T L+ + F+I+ SG + I V L + T +VVVA D G
Sbjct: 160 EAVDRDTGSGGSITYFLQNIHANKFTIDRHSGVLRIKSGVTLDYEKSRTHFVVVVAKDGG 219
Query: 223 NPPR 226
R
Sbjct: 220 GKLR 223
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 44 QFSKNEYSVSALENLPVN---YVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLM 100
+F Y V EN P + + V + + Y+L N + +F+I R + +
Sbjct: 136 EFINTPYIVQVPENSPSGSSIFKIEAVDRDTGSGGSITYFLQNIHANKFTIDRHSGVLRI 195
Query: 101 QC---LDYETEDSYRFTVYATD---------TLMTTSATVNISVVNVNDWDPRFRYPQYE 148
+ LDYE ++ V A D + + + TV ++V +V D P F Y
Sbjct: 196 KSGVTLDYEKSRTHFVVVVAKDGGGKLRGDNKVFSATTTVTVNVEDVQDTPPMFIGTPYY 255
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSI-NDSGHISIV 202
++ D PGS + V A DGD+G + + + E F I N +G IS++
Sbjct: 256 GYV----YEDTLPGSEVLTVVALDGDRGKPNNIHYCIVNGSEGSFEISNTTGAISVI 308
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 116/290 (40%), Gaps = 33/290 (11%)
Query: 11 ITLVVRAIQYDNQDRYA-LATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTT 69
+T + AI+ + ++++ A + + T+ +FS + Y EN P ++ VT
Sbjct: 440 LTFKLLAIEVNTPEKFSSTADIAIRLLDTNDNVPKFSSDYYIARIPENSPGGSNVVAVTA 499
Query: 70 NKPRDL---RVKYWLSNDYGERFSISRQGDISLMQ---CLDYETEDSYRFTVYATDTLMT 123
P VKY + + F I I Q LD E Y F V A DT
Sbjct: 500 TDPDSGLWGEVKYSIYGTGADLFLIHPSTGIIYTQPWAVLDAEVNSKYNFYVKAEDTDGK 559
Query: 124 TS-ATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS 182
S A V I+V++VND P F +I + GS + K+EA D D + +
Sbjct: 560 YSLAEVFITVLDVNDHSPEFN--------ENIQEKTMIIGSPV-KIEAIDQDAEEPNNIV 610
Query: 183 ----LRGPYEKMFSINDS-GHIS----------IVDLSALNTSTIQLVVVATDTGNPPRQ 227
++ +F I+ S G I I +++ LVV A D G+P
Sbjct: 611 DYSIMQADPANVFDIDQSTGEIKLKSYIRSLDIIHNITKNKDCIWSLVVQAKDRGSPSFS 670
Query: 228 ASVPAIMHFPEAIVQQAS-SKLNSGTSSTVLIILGVVLIVLGFVIILLIL 276
+ + E + + + T + LGV+ V+G ++++ I+
Sbjct: 671 TTAVLKIDITEETLHKGPMAAFLMQTKDNPMKALGVLAGVMGIMVLITIM 720
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 29/178 (16%)
Query: 56 ENLPVNYVLLTVTTNKPRDL--RVKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYR 112
+ LP + VL V + R + Y + N F IS G IS+++ + ++ Y
Sbjct: 261 DTLPGSEVLTVVALDGDRGKPNNIHYCIVNGSEGSFEISNTTGAISVIKSPNQLKKEVYE 320
Query: 113 FTVYAT------DTLMTTSATVNISVVNVNDWDPRF---RYPQ--YELFL-PHIPLADLT 160
V A+ D ATV I VV++N+ P F PQ +EL + H P ++
Sbjct: 321 LRVQASEVSPEGDVSAYAFATVTIRVVDLNNHPPTFYGESGPQNRFELTMYEHPPEGEIL 380
Query: 161 PGSVIGKVEAADGDKGDRVTLSLR--GPYEKMFSINDSGHISIVDLSALNTSTIQLVV 216
G K+ D D+G +LR GP G +V L+ LN + + ++V
Sbjct: 381 RGL---KITVNDSDQGANAKFNLRLVGP---------GGIFRVVPLTVLNEAQVTIIV 426
>sp|Q9BZA8|PC11Y_HUMAN Protocadherin-11 Y-linked OS=Homo sapiens GN=PCDH11Y PE=1 SV=1
Length = 1340
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQ 101
F+ NEY ENLP + L+TVT D D + F+I Q G I
Sbjct: 602 FTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNI 661
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP----QYELFLPHI 154
D E ++SY F V A D ++SA V I+VV+VND P F P YEL LP
Sbjct: 662 SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLP-- 719
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
PG+V+ +V A D D G + + G +F+I+ ++G+I++++ +
Sbjct: 720 ---STNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDL 776
Query: 211 TIQLVVV-ATDTGNP 224
+ V+V A D G P
Sbjct: 777 GLHRVLVKANDLGQP 791
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSISRQ-GDISLM 100
F+++ +VS EN L+ V+ + + + Y L D FS+ R+ G ++++
Sbjct: 498 FTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVV 557
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ LD E ED Y FT+ A D +T++ TV +S+++ ND P F + +Y+ ++P
Sbjct: 558 KKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPE---- 613
Query: 158 DLTPGSVIGKVEAADGDKGDR--VTLSL 183
+L +G + D D GD VTLS+
Sbjct: 614 NLPRHGTVGLITVTDPDYGDNSAVTLSI 641
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +D+Y V D +++A + +SV + ND P F+ + E+ +P +
Sbjct: 239 LDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE----NA 294
Query: 160 TPGSVIGKVEAADGDKGDRVTLS------LRGPYEKMFSIN-DSGHISIVD-LSALNTST 211
G+ + ++ A D D G+ + + ++F +N +G I+I + L T
Sbjct: 295 PVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPN 354
Query: 212 IQLVVVATDTGNPPRQASV 230
+L+V+A+D G P +A V
Sbjct: 355 HKLLVLASDGGLMPARAMV 373
>sp|P55281|CAD17_RAT Cadherin-17 OS=Rattus norvegicus GN=Cdh17 PE=2 SV=1
Length = 827
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 39/292 (13%)
Query: 14 VVRAIQYDNQDRYALATLIVSKAGTSLRELQ-FSKNEYSVSALENLPVNYVLLTVTTNKP 72
+V I+Y N +A L V T + E+ F + + + E+ + + TVT P
Sbjct: 538 LVNGIEY-NASSFASFELTV----TDVNEVPVFPQQIFQANVSEDTAIGTKVGTVTARDP 592
Query: 73 RDLRVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATV 128
L V Y L ++ I S GDI LD ETE YR V AT+ + ++++A
Sbjct: 593 EGLTVSYSLKDNKRGWLKIDSVTGDIFSTAPLDRETESVYRVQVVATEVGGSSLSSTAYF 652
Query: 129 NISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYE 188
++ +++VND PR LF H PL+ PGS+I EA D D+ S+R P +
Sbjct: 653 HLVLMDVNDNPPRLAKDYTGLFFCH-PLS--APGSLI--FEATDDDQQ-----SVRRP-K 701
Query: 189 KMFSINDSGHISIVDLSALNTSTIQLV--------------VVATDTGNPPRQASVPAIM 234
F++ S ++S +N + +L ++ D G PP + V +
Sbjct: 702 FTFALGRESLQSDWEVSKINGTHARLSTKHTRFEEQVYDIPILINDGGQPPMEGIVSLSV 761
Query: 235 HFPEAI----VQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNK 282
F + + + A +++ T + IL +V+G ++ ++ + + K+K
Sbjct: 762 TFCQCVDGSCFRPAGNQVGIPTVGMAVGILLTTFLVIGIILAVVFIRMRKDK 813
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 30/128 (23%)
Query: 89 FSISRQGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPR---- 141
FSI ++G+I + Q LD E +DS+ F A D + + + V+++ND P
Sbjct: 283 FSIDQEGNIYVTQPLDREEKDSHVFFATAKDENGKPLAYPLEIRVKVIDINDNPPTCLSQ 342
Query: 142 ---FRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG---------PYEK 189
F + E+ GS IG A D D+ + + L+ P ++
Sbjct: 343 VTVFEVQENEVL-----------GSSIGIFAAHDMDEANNINSILKYRLVDQTPKVPSDE 391
Query: 190 MFSINDSG 197
+F I++ G
Sbjct: 392 LFLIDEYG 399
>sp|Q9BZA7|PC11X_HUMAN Protocadherin-11 X-linked OS=Homo sapiens GN=PCDH11X PE=2 SV=1
Length = 1347
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQ 101
F+ NEY+ ENLP + L+TVT D D + F+I Q G I
Sbjct: 570 FTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNI 629
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP----QYELFLPHI 154
D E ++SY F V A D ++SA V I+VV+VND P F P YEL LP
Sbjct: 630 SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLP-- 687
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
PG+V+ +V A D D G + + G +F+I+ ++G+I++++ +
Sbjct: 688 ---STNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDL 744
Query: 211 TIQLVVV-ATDTGNP 224
+ V+V A D G P
Sbjct: 745 GLHRVLVKANDLGQP 759
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 76 RVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNIS 131
++ Y L D FS+ R G +++++ LD E ED Y FT+ A D +T++ TV +S
Sbjct: 500 KINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS 559
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSL 183
+++ ND P F + +Y ++P +L +G + D D GD VTLS+
Sbjct: 560 IIDQNDNSPVFTHNEYNFYVPE----NLPRHGTVGLITVTDPDYGDNSAVTLSI 609
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +D+Y V D +++A + +SV + ND P F+ + E+ +P +
Sbjct: 207 LDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE----NA 262
Query: 160 TPGSVIGKVEAADGDKGDRVTLS------LRGPYEKMFSIN-DSGHISIVD-LSALNTST 211
G+ + ++ A D D G+ + + ++F +N +G I+I + L T
Sbjct: 263 PVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPN 322
Query: 212 IQLVVVATDTGNPPRQASV 230
+L+V+A+D G P +A V
Sbjct: 323 HKLLVLASDGGLMPARAMV 341
>sp|Q6X862|PC11X_GORGO Protocadherin-11 X-linked OS=Gorilla gorilla gorilla GN=PCDH11X
PE=3 SV=1
Length = 1347
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQ 101
F+ NEY+ ENLP + L+TVT D D + F+I Q G I
Sbjct: 570 FTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNI 629
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP----QYELFLPHI 154
D E ++SY F V A D ++SA V I+VV+VND P F P YEL LP
Sbjct: 630 SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNYSYELVLP-- 687
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
PG+V+ +V A D D G + + G +F+I+ ++G+I++++ +
Sbjct: 688 ---STNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDL 744
Query: 211 TIQLVVV-ATDTGNP 224
+ V+V A D G P
Sbjct: 745 GLHRVLVKANDLGQP 759
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 76 RVKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNIS 131
+ Y L D FS+ R+ G +++++ LD E ED Y FT+ A D +T++ TV +S
Sbjct: 500 EINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS 559
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSL 183
+++ ND P F + +Y ++P +L +G + D D GD VTLS+
Sbjct: 560 IIDQNDNSPVFTHNEYNFYVPE----NLPRHGTVGLITVTDPDYGDNSAVTLSI 609
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +D+Y V D +++A + +SV + ND P F+ + E+ +P +
Sbjct: 207 LDREKKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE----NA 262
Query: 160 TPGSVIGKVEAADGDKGDRVTLS------LRGPYEKMFSIN-DSGHISIVD-LSALNTST 211
G+ + ++ A D D G+ + + ++F +N +G I+I + L T
Sbjct: 263 PVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPN 322
Query: 212 IQLVVVATDTGNPPRQASV 230
+L+V+A+D G P +A V
Sbjct: 323 HKLLVLASDGGLMPARAMV 341
>sp|Q6WXV7|PC11X_PONPY Protocadherin-11 X-linked OS=Pongo pygmaeus GN=PCDH11X PE=3 SV=1
Length = 1347
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 45 FSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGERFSISRQ-GDISLMQ 101
F+ NEY+ ENLP + L+TVT D D + F+I Q G I
Sbjct: 570 FTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNI 629
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYP----QYELFLPHI 154
D E ++SY F V A D ++SA V I+VV+VND P F P YEL LP
Sbjct: 630 SFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNYSYELVLP-- 687
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
PG+V+ +V A D D G + + G +F+I+ ++G+I++++ +
Sbjct: 688 ---STNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDL 744
Query: 211 TIQLVVV-ATDTGNP 224
+ V+V A D G P
Sbjct: 745 GLHRVLVKANDLGQP 759
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 76 RVKYWLSNDYGERFSISRQ-GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNIS 131
+ Y L D FS+ R+ G +++++ LD E ED Y FT+ A D +T++ TV +S
Sbjct: 500 EINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVS 559
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR--VTLSL 183
+++ ND P F + +Y ++P +L +G + D D GD VTLS+
Sbjct: 560 IIDQNDNSPVFTHNEYNFYVPE----NLPRHGTVGLITVTDPDYGDNSAVTLSI 609
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 103 LDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E +D+Y V D +++A + +SV + ND P F+ + E+ +P +
Sbjct: 207 LDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPE----NA 262
Query: 160 TPGSVIGKVEAADGDKGDRVTLS------LRGPYEKMFSIN-DSGHISIVD-LSALNTST 211
G+ + ++ A D D G+ + + ++F +N +G I+I + L T
Sbjct: 263 PVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPN 322
Query: 212 IQLVVVATDTGNPPRQASV 230
+L+V+A+D G P +A V
Sbjct: 323 HKLLVLASDGGLMPARAMV 341
>sp|Q9Y5E2|PCDB7_HUMAN Protocadherin beta-7 OS=Homo sapiens GN=PCDHB7 PE=2 SV=1
Length = 793
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 27/176 (15%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNSSA 570
Query: 152 PH---IPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD- 203
P +P A PG ++ KV A DGD G LS L+ +F + +G +
Sbjct: 571 PCTEPLPRA-AEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARL 629
Query: 204 LSALNTSTIQLVVVATDTGNPPRQASVPAIMH-------------FPEAIVQQASS 246
LS + + +LVV+ D G PPR A+ A +H PEA QA+S
Sbjct: 630 LSERDAAKQRLVVLVKDNGEPPRSAT--ATLHVLLVDGFSQPYLRLPEAAPDQANS 683
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 103 LDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E Y T+ TD + T + + V +VND P F Y LF+ +
Sbjct: 409 LDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE----NN 464
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSL------RGPYEKMFSIN-DSGH---ISIVDLSAL 207
+P IG V A D D G +V SL P + SIN D+GH + +D AL
Sbjct: 465 SPALPIGSVSATDRDSGTNAQVIYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEAL 524
Query: 208 NTSTIQLVVVATDTGNP 224
+ V ATD G+P
Sbjct: 525 Q--AFEFRVGATDRGSP 539
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 96 DISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
++ L Q LD E + T+ A D + +A V I V++VND P F Y++ +P
Sbjct: 193 ELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVP 252
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYE-----KMFSIN-DSGHISI---VD 203
+ GS++ V A D D G ++ Y K F IN SG + + +D
Sbjct: 253 E----NSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGSLHLKAQLD 308
Query: 204 LSALNTSTIQLVVVATDTG 222
A+ T T L + A D G
Sbjct: 309 YEAIQTYT--LTIQAKDGG 325
>sp|Q8VHP6|CDHR1_MOUSE Cadherin-related family member 1 OS=Mus musculus GN=Cdhr1 PE=1 SV=1
Length = 859
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSISRQGDISL 99
+F + Y + EN+P + V +D V Y L N + +FS+ R +
Sbjct: 134 RFIQEPYIIRVPENIPAGSSIFKVQAED-KDTGSGGSVTYSLQNLHSSKFSMDRHSGVLR 192
Query: 100 MQC---LDYETEDSYRFTVYA---------TDTLMTTSATVNISVVNVNDWDPRFRYPQY 147
+Q LDYE ++ TV A D + + + TV I+V +V D P F Y
Sbjct: 193 LQAGATLDYEKSRAHYITVIAKDGGGRLRGADMVFSATTTVTINVEDVQDTAPIFVGTPY 252
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDL 204
++ D PGS + V A DGD+G + + L + +F IN+ SG IS++
Sbjct: 253 YGYV----YEDTLPGSEVLTVVAIDGDRGKPNHILYRLLNESDGIFEINETSGAISVLQS 308
Query: 205 SA-LNTSTIQLVVVATDT---GNPPRQASVP 231
A L +L V T+ G+P QA+VP
Sbjct: 309 PALLRREVYELHVQVTEVNSPGSPAAQATVP 339
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 17/186 (9%)
Query: 56 ENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER--FSISRQ-GDISLMQCLDYETEDSYR 112
E+ PV + T+ P + Y +S D R FS+ G+I+L++ LD E ED
Sbjct: 46 EDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSVDPNFGNITLVEELDREREDEIE 105
Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
+ +D L + V I V + ND PRF Y + +P ++ GS I KV+A D
Sbjct: 106 AIISISDGLNLVAEKVVILVTDANDEAPRFIQEPYIIRVPE----NIPAGSSIFKVQAED 161
Query: 173 GD--KGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQ------LVVVATDTGNP 224
D G VT SL+ + FS++ H ++ L A T + + V+A D G
Sbjct: 162 KDTGSGGSVTYSLQNLHSSKFSMDR--HSGVLRLQAGATLDYEKSRAHYITVIAKDGGGR 219
Query: 225 PRQASV 230
R A +
Sbjct: 220 LRGADM 225
>sp|Q5DRC9|PCDB5_PANTR Protocadherin beta-5 OS=Pan troglodytes GN=PCDHB5 PE=3 SV=1
Length = 795
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 569
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +FS+ +G + L
Sbjct: 570 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFSMWAHNGEVRTARLL 629
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S + + +LVV+ D G PPR A+ A +H
Sbjct: 630 SERDAAKHRLVVLVKDNGEPPRSAT--ATLH 658
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYG--------ERFSI-SRQ 94
+F ++ Y V EN P+N +++ V+ RDL + S Y + F I +
Sbjct: 241 EFLQSLYEVQVPENSPLNSLVVVVSA---RDLDAGAYGSVAYALFQGDEVTQPFVIDEKT 297
Query: 95 GDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
G+I L + LD+E Y + ATD ++ TV + VV+VND P+ +
Sbjct: 298 GEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAMEVVDVND-----NAPELTMSTLS 352
Query: 154 IPLADLTPGSVIGKVEAADGDKGD 177
P+ + P +V+ +D D GD
Sbjct: 353 SPIPENAPETVVAVFSVSDPDSGD 376
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ LD E++ Y T+ TD + T + + V +VND P F Y LF+
Sbjct: 406 RTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE---- 461
Query: 158 DLTPGSVIGKVEAADGDKGD--RVTLSLRGP------YEKMFSIN-DSGH---ISIVDLS 205
+ +P IG V A D D G +VT SL P + SIN D+GH + +D
Sbjct: 462 NNSPALQIGSVSATDRDSGTNAQVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYE 521
Query: 206 ALNTSTIQLVVVATDTGNP 224
AL + V ATD G+P
Sbjct: 522 ALQ--AFEFRVGATDRGSP 538
>sp|Q9Y5E4|PCDB5_HUMAN Protocadherin beta-5 OS=Homo sapiens GN=PCDHB5 PE=1 SV=1
Length = 795
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 569
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +FS+ +G + L
Sbjct: 570 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFSMWAHNGEVRTARLL 629
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S + + +LVV+ D G PPR A+ A +H
Sbjct: 630 SERDAAKHRLVVLVKDNGEPPRSAT--ATLH 658
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ LD E++ Y T+ TD + T + + V +VND P F Y LF+
Sbjct: 406 RTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE---- 461
Query: 158 DLTPGSVIGKVEAADGDKGD--RVTLSLRGP------YEKMFSIN-DSGH---ISIVDLS 205
+ +P IG V A D D G +VT SL P + SIN D+GH + +D
Sbjct: 462 NNSPALHIGSVSATDRDSGTNAQVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYE 521
Query: 206 ALNTSTIQLVVVATDTGNP 224
AL + V ATD G+P
Sbjct: 522 ALQ--AFEFRVGATDRGSP 538
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYG--------ERFSI-SRQ 94
+F ++ Y V EN P+N +++ V+ RDL + S Y + F I +
Sbjct: 241 EFLQSFYEVQVPENSPLNSLVVVVSA---RDLDAGAYGSVAYALFQGDEVTQPFVIDEKT 297
Query: 95 GDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
+I L + LD+E Y + ATD ++ TV I VV+VND P+ +
Sbjct: 298 AEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVND-----NAPELTMSTLS 352
Query: 154 IPLADLTPGSVIGKVEAADGDKGD 177
P + P +V+ +D D GD
Sbjct: 353 SPTPENAPETVVAVFSVSDPDSGD 376
>sp|Q9Y5E8|PCDBF_HUMAN Protocadherin beta-15 OS=Homo sapiens GN=PCDHB15 PE=1 SV=1
Length = 787
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + +Q LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALQSLDYEALQAFEFRVGATDRGFPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PH---IPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD- 203
P +P A PG ++ KV A DGD G LS L+ +F + +G +
Sbjct: 571 PCTELVPRA-AEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARL 629
Query: 204 LSALNTSTIQLVVVATDTGNPPRQASV 230
LS + + +LVV+ D G PPR A+
Sbjct: 630 LSERDVAKHRLVVLVKDNGEPPRSATA 656
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 21/138 (15%)
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD ET Y T+ TD + T ++ + V +VND P F Y LF+ +
Sbjct: 408 ALDRETRAEYNITITITDLGTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRE----N 463
Query: 159 LTPGSVIGKVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSA 206
+P IG V A D D G +VT SL P + + SIN D+GH + +D A
Sbjct: 464 NSPALHIGSVSATDRDSGTNAQVTYSLLPPRDPHLPLTSLVSINTDNGHLFALQSLDYEA 523
Query: 207 LNTSTIQLVVVATDTGNP 224
L + V ATD G P
Sbjct: 524 LQ--AFEFRVGATDRGFP 539
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVK---------YWLSNDYGERFSISR- 93
+F + Y V EN PV +++ V+ RDL Y+ S + + F +S
Sbjct: 241 EFVQALYEVQVPENSPVGSLVVKVSA---RDLDTGTNGEISYSLYYSSQEIDKPFELSSL 297
Query: 94 QGDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
G+I L++ LD+ET SY + A+D ++ +V++ V++VND +P+ +
Sbjct: 298 SGEIRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVND-----NFPELSISSL 352
Query: 153 HIPLADLTPGSVIGKVEAADGDKGD 177
P+ + +P + + D D G+
Sbjct: 353 TSPIPENSPETEVALFRIRDRDSGE 377
>sp|Q91XU7|CDHR1_RAT Cadherin-related family member 1 OS=Rattus norvegicus GN=Cdhr1 PE=2
SV=1
Length = 859
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 28/215 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSISRQGDISL 99
+F + Y++ EN P + V +D V Y+L + + +F++ R +
Sbjct: 134 RFLQEPYNILVPENTPAGSSIFKVQAED-KDTGSGGSVTYFLQSLHSSKFTVDRHSGVLR 192
Query: 100 MQC---LDYETEDSYRFTVYA---------TDTLMTTSATVNISVVNVNDWDPRFRYPQY 147
+Q LDYE ++ TV A D + + + TV I+V +V D P F Y
Sbjct: 193 LQAGATLDYEKSRAHFITVVAKDGGGRLRGADVVFSATTTVTINVEDVQDTAPIFVGTPY 252
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIND-SGHISIVDL 204
++ D PGS + V A DGD+G + + L + +F IN+ SG IS++
Sbjct: 253 YGYV----YEDTLPGSEVLTVVAIDGDRGKPNHILYRLLNESDGLFEINETSGAISVLQS 308
Query: 205 SA-LNTSTIQLVVVATD---TGNPPRQASVPAIMH 235
A L +L V T+ +G+P Q++VP I+
Sbjct: 309 PAQLRREVYELHVQVTEVNSSGSPAAQSTVPVIIR 343
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 56 ENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER--FSISRQ-GDISLMQCLDYETEDSYR 112
E+ PV + T+ P + Y +S D R FS+ G+I+L++ LD E ED
Sbjct: 46 EDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSVDPNFGNITLVEELDREREDEIE 105
Query: 113 FTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD 172
+ +D L + V I V + ND PRF Y + +P + GS I KV+A D
Sbjct: 106 AIISISDGLNLVAEKVVIVVTDANDEAPRFLQEPYNILVPE----NTPAGSSIFKVQAED 161
Query: 173 GD--KGDRVTLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQ------LVVVATDTGNP 224
D G VT L+ + F+++ H ++ L A T + + VVA D G
Sbjct: 162 KDTGSGGSVTYFLQSLHSSKFTVDR--HSGVLRLQAGATLDYEKSRAHFITVVAKDGGGR 219
Query: 225 PRQASV 230
R A V
Sbjct: 220 LRGADV 225
>sp|Q5DRC7|PCDB7_PANTR Protocadherin beta-7 OS=Pan troglodytes GN=PCDHB7 PE=3 SV=1
Length = 793
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V++ V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRSSPALSSEALVHVLVLDANDNSPFVLYPLQNSSA 570
Query: 152 PH---IPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD- 203
P +P A PG ++ KV A DGD G LS L+ +F + +G +
Sbjct: 571 PCTEPLPRA-AEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARL 629
Query: 204 LSALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
LS + + +LVV+ D G PPR A+ A +H
Sbjct: 630 LSERDAAKQRLVVLVKDNGEPPRSAT--ATLH 659
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 103 LDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E Y T+ TD + T + + V +VND P F Y LF+ +
Sbjct: 409 LDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE----NN 464
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSL------RGPYEKMFSIN-DSGH---ISIVDLSAL 207
+P IG V A D D G +V SL P + SIN D+GH + +D AL
Sbjct: 465 SPALPIGSVSATDRDSGTNAQVIYSLLPSQDPHLPLSSLVSINADNGHLFALRSLDYEAL 524
Query: 208 NTSTIQLVVVATDTGNPPRQASVPAIMH 235
+ V ATD +P S A++H
Sbjct: 525 Q--AFEFRVGATDRSSP--ALSSEALVH 548
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 96 DISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
++ L Q LD E + T+ A D + +A V I V++VND P F Y++ +P
Sbjct: 193 ELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVP 252
Query: 153 HIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYE-----KMFSIN-DSGHISI---VD 203
+ GS++ V A D D G ++ Y K F IN SG++ + +D
Sbjct: 253 E----NSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGNLHLKAQLD 308
Query: 204 LSALNTSTIQLVVVATDTG 222
A+ T T L + A D G
Sbjct: 309 YEAIQTYT--LTIQAKDGG 325
>sp|Q9NRJ7|PCDBG_HUMAN Protocadherin beta-16 OS=Homo sapiens GN=PCDHB16 PE=1 SV=3
Length = 776
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE + F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALREFEFRVSATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 571 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 630
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH-------------FPEAIVQQASSKLNSG 251
S + + +LVV+ D G PPR A+ A +H PEA Q ++ NS
Sbjct: 631 SERDAAKQRLVVLVKDNGEPPRSAT--ATLHVLLVDGFSQPFLPLPEAAPGQ--TQANSL 686
Query: 252 TSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
T V+ + V + L V++ + + + + + G
Sbjct: 687 TVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVG 723
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 101 QCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA 157
+ LD E Y T+ TD + T + + + +VND P F Y LF+
Sbjct: 407 RALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRE---- 462
Query: 158 DLTPGSVIGKVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLS 205
+ +P IG V A D D G +VT SL P + + SIN D+GH + +D
Sbjct: 463 NNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYE 522
Query: 206 ALNTSTIQLVVVATDTGNP 224
AL + V ATD G+P
Sbjct: 523 ALR--EFEFRVSATDRGSP 539
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 96 DISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
++ L + LD E E R T+ A D + +A V I VV++ND P F P Y++ +P
Sbjct: 193 ELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQIP 252
Query: 153 -HIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGPYE---KMFSIND-SGHISI---V 202
+ PL GS++ V A D D G +++ +L P E K +N +G + + V
Sbjct: 253 ENSPL-----GSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGEVRLRKQV 307
Query: 203 DLSALNTSTIQLVVVATDTG 222
D + + ++ + ATD G
Sbjct: 308 DFEMVTSYEVR--IKATDGG 325
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWL---SNDYGERFSIS-R 93
+F + Y V EN P+ ++ TV+ RDL ++ Y L S D + ++
Sbjct: 241 EFEQPIYKVQIPENSPLGSLVATVSA---RDLDGGANGKISYTLFQPSEDISKTLEVNPM 297
Query: 94 QGDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
G++ L + +D+E SY + ATD ++ T+ + VV+VND +P PQ +
Sbjct: 298 TGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVND-NP----PQVTMSAL 352
Query: 153 HIPLADLTPGSVIGKVEAADGDKGD 177
P+ + +P V+ +D D G+
Sbjct: 353 TSPIPENSPEIVVAVFSVSDPDSGN 377
>sp|Q5DRD8|PCDBB_PANTR Protocadherin beta-11 OS=Pan troglodytes GN=PCDHB11 PE=3 SV=1
Length = 797
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 31/215 (14%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 571 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFXVWAHNGEVRTARLL 630
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH-------------FPEAIVQQASSKLNSG 251
S + + +LVV+ D G PPR A+ A +H PEA QA +
Sbjct: 631 SERDAAKHRLVVLVKDNGEPPRSAT--ATLHVLLVDGFSQPFLPLPEAAPAQAQTDF--- 685
Query: 252 TSSTVLIILGVVLI-VLGFVIILLILYIHKNKHTK 285
TV +++ + + L F +LL + + + ++
Sbjct: 686 --LTVYLVVALASVSSLFFFSVLLFVAVRLCRRSR 718
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSN---DYGERFSISRQ-GD 96
+F + Y V EN + ++LTV+ + + + Y LS+ D + F I+++ GD
Sbjct: 241 EFEQAFYEVKIPENSILGSLILTVSAWDLDSGTNGEICYTLSHASEDIRKTFEINQKSGD 300
Query: 97 ISLMQCLDYETEDSYRFTVYATDT-LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI- 154
I+L LD+ET +SY + ATD + +TV I V++VND P E+ + I
Sbjct: 301 ITLTAPLDFETIESYSIIIQATDRGGLFGKSTVRIQVIDVNDNAP-------EITVSSIT 353
Query: 155 -PLADLTPGSVIGKVEAADGDKGD--RVTLSL 183
P+ + TP +V+ D D GD R+ S+
Sbjct: 354 SPIPENTPETVVMVFSIQDIDSGDNGRIVCSI 385
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 103 LDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E+ Y T+ TD + T + V +VND P F Y LF+ +
Sbjct: 409 LDRESTAEYNITITVTDLGIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVSE----NN 464
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSAL 207
+P IG V A D D G +V SL P + + SIN D+GH + +D AL
Sbjct: 465 SPALHIGSVSATDRDSGTNAQVNYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEAL 524
Query: 208 NTSTIQLVVVATDTGNP 224
+ V ATD G+P
Sbjct: 525 Q--AFEFRVGATDRGSP 539
>sp|Q9Y5E6|PCDB3_HUMAN Protocadherin beta-3 OS=Homo sapiens GN=PCDHB3 PE=2 SV=1
Length = 796
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 571 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 630
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S + + +LVV+ D G PPR A+ A +H
Sbjct: 631 SERDAAKHRLVVLVKDNGEPPRSAT--ATLH 659
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 30/200 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQ--------- 94
+F++ Y V+ LEN PVN V++TV+ + DL + + Y F S +
Sbjct: 241 EFAQPLYEVAVLENTPVNSVIVTVSAS---DLDTGSFGTISYA-FFHASEEIRKTFQLNP 296
Query: 95 --GDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
GD+ L++ L++E +SY + A D ++ +TV + VV+VND P EL L
Sbjct: 297 ITGDMQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPP-------ELTL 349
Query: 152 PHI--PLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISIVDLSAL 207
+ P+ + + +V+ +D D GD RV S+ + ++V AL
Sbjct: 350 SSVNSPIPENSGETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGAL 409
Query: 208 NTST---IQLVVVATDTGNP 224
+ T + + TD G P
Sbjct: 410 DRETRSEYNITITITDLGTP 429
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 50 YSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETED 109
+SVS L++ V+ ++ N P ++L +++ +G LD ET
Sbjct: 368 FSVSDLDSGDNGRVMCSIENNLP------FFLKPSVENFYTLVSEG------ALDRETRS 415
Query: 110 SYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIG 166
Y T+ TD + T + + V +VND P F Y LF+ + +P IG
Sbjct: 416 EYNITITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRE----NNSPALHIG 471
Query: 167 KVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSALNTSTIQL 214
V A D D G +VT SL P + + SIN D+GH + +D AL +
Sbjct: 472 SVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQ--AFEF 529
Query: 215 VVVATDTGNP 224
V ATD G+P
Sbjct: 530 RVGATDRGSP 539
>sp|Q5DRA7|PCDGH_PANTR Protocadherin gamma-B5 OS=Pan troglodytes GN=PCDHGB5 PE=3 SV=1
Length = 923
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 17/202 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDY---GERFSI-SRQGDISLM 100
F+++ Y VS EN+P +L V+ +D + ++ + G+ FS+ S+ G+I+
Sbjct: 242 FNRDVYRVSLRENVPPGTTVLQVSATD-QDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
Query: 101 QCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
+ LD+E Y V D + TV I++ + ND P + L + L +
Sbjct: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHS----LLEMILENA 356
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRG--PYEKMFSINDSGHISIVD--LSALNTSTIQ 213
PG++I ++ D D G+ V L+G P+ K+ S + + + + D L T
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPF-KIISSSKNSYKLVTDGTLDREQTPEYN 415
Query: 214 LVVVATDTGNPPRQASVPAIMH 235
+ + ATD G PP +S+ I+H
Sbjct: 416 VTITATDRGKPPLSSSISVILH 437
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 90 SISRQGDISLMQ-CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYP 145
S+S Q + Q DYE ++ T+ A D ++ + ++ + V + ND PR YP
Sbjct: 502 SMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYP 561
Query: 146 QY----ELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSG 197
+P A PG ++ KV A D D G LS L +FS+ +G
Sbjct: 562 ALGPDGSALFDMVPRA-AEPGYLVTKVVAVDADSGHNAWLSYHVLHASEPGLFSLGLRTG 620
Query: 198 HISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHF 236
+ L + + +L+V D G PP A+ A +H
Sbjct: 621 EVRTARALGDRDAARQRLLVAVRDGGQPPLSAT--ATLHL 658
>sp|Q9Y5F1|PCDBC_HUMAN Protocadherin beta-12 OS=Homo sapiens GN=PCDHB12 PE=2 SV=1
Length = 795
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 571 PCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 630
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S + + +LVV+ D G PPR A+ A +H
Sbjct: 631 SERDAAKHRLVVLVKDNGEPPRSAT--ATLH 659
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 36/222 (16%)
Query: 2 INEDDFLQPITLVVRAIQYDNQDRYALATLIVS-------KAGTSLREL----------Q 44
+N D+ P ++ +A+ Y ++R L+ ++ + ++GT+L + +
Sbjct: 184 VNPDNRKYPELVLDKALDY--EERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPE 241
Query: 45 FSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSN---DYGERFSISRQ-GDI 97
F + Y V LEN + +++TV+ + + + Y S+ D + F I+++ GDI
Sbjct: 242 FEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDI 301
Query: 98 SLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI-- 154
+L LD+E +SY + ATD + +TV I V++VND P E+ + I
Sbjct: 302 TLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAP-------EITVSSITS 354
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDS 196
P+ + TP +V+ D D GD + P + F + S
Sbjct: 355 PIPENTPETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSS 396
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 103 LDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E+ Y T+ TD + T + + V +VND P F Y LF+ +
Sbjct: 409 LDRESRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRE----NN 464
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSL------RGPYEKMFSIN-DSGH---ISIVDLSAL 207
+P IG + A D D G +V SL P + SIN D+GH + +D AL
Sbjct: 465 SPALHIGSISATDRDSGTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEAL 524
Query: 208 NTSTIQLVVVATDTGNP 224
Q V ATD G+P
Sbjct: 525 Q--GFQFRVGATDHGSP 539
>sp|Q9Y5E3|PCDB6_HUMAN Protocadherin beta-6 OS=Homo sapiens GN=PCDHB6 PE=2 SV=1
Length = 794
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE S+ F V ATD +++ A V + V++ ND P YP
Sbjct: 509 GHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLLVLDANDNSPFVLYPLQNGSA 568
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 569 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATELGLFGVWAHNGEVRTARLL 628
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S + + +LVV+ D G PPR A+ A +H
Sbjct: 629 SERDAAKHRLVVLVKDNGEPPRSAT--ATLH 657
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD E+ Y T+ TD + T ++ + V +VND P F Y LF+ +
Sbjct: 406 ALDRESRAEYNITITVTDLGTPRLKTQQSITVQVSDVNDNVPAFTQTSYTLFVRE----N 461
Query: 159 LTPGSVIGKVEAADGDKG--DRVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSA 206
+P IG V A D D G +VT SL P + + SIN D+GH + +D A
Sbjct: 462 NSPALHIGSVSATDRDSGINAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEA 521
Query: 207 LNTSTIQLVVVATDTGNP 224
L + + V ATD G+P
Sbjct: 522 LQ--SFEFRVGATDRGSP 537
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWL--SNDYGERFSISR-Q 94
+F++ Y EN P+ +++TV+ RDL +V Y L +D + F I+
Sbjct: 240 EFAQELYEAQVPENNPLGSLVITVSA---RDLDAGSFGKVSYALFQVDDVNQPFEINAIT 296
Query: 95 GDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
G+I L + LD+E SY V ATD ++ ++ + V++VND P F+
Sbjct: 297 GEIRLRKALDFEEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPEL---TMSFFISL 353
Query: 154 IPLADLTPGSVIGKVEAADGDKG 176
IP + P + +D D G
Sbjct: 354 IP--ENLPEITVAVFSVSDADSG 374
>sp|Q5DRD9|PCDBA_PANTR Protocadherin beta-10 OS=Pan troglodytes GN=PCDHB10 PE=3 SV=1
Length = 798
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PHIPLA--DLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 571 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 630
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMHF 236
S + + +LVV+ D G PPR A+ A +H
Sbjct: 631 SERDAAKHRLVVLVKDNGEPPRSAT--ATLHL 660
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 21/138 (15%)
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD E Y T+ TD + T + + V +VND P F Y LF+ +
Sbjct: 408 ALDRELRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE----N 463
Query: 159 LTPGSVIGKVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSA 206
+P IG V A DGD G +VT SL P + + SIN D+GH + +D A
Sbjct: 464 NSPALHIGSVSATDGDSGTNAQVTYSLLPPQDLHLPLASLVSINADNGHLFALRSLDYEA 523
Query: 207 LNTSTIQLVVVATDTGNP 224
L + V ATD G+P
Sbjct: 524 LQ--AFEFRVGATDRGSP 539
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 3 NEDDFLQPITLVVRAIQYDNQDRYALATLIV-----SKAGTSLREL----------QFSK 47
+++ + P ++ +A+ + Q+ +L + S++GTS + QF++
Sbjct: 185 SDEGMIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQ 244
Query: 48 NEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSNDYGERFSISRQ-----GDISL 99
Y A EN P+ ++++ V+ + + V Y D E + Q G+I L
Sbjct: 245 ALYETQAPENSPIGFLIVKVSAEDVDSGVNAEVSYSFF-DASENIRTTFQINPFSGEIFL 303
Query: 100 MQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRF 142
+ LDYE +SY+ + A D ++ V + V++ ND P
Sbjct: 304 RELLDYELVNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPEL 347
>sp|Q9Y5G0|PCDGH_HUMAN Protocadherin gamma-B5 OS=Homo sapiens GN=PCDHGB5 PE=2 SV=1
Length = 923
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 17/202 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDY---GERFSI-SRQGDISLM 100
F+++ Y VS EN+P +L V+ +D + ++ + G+ FS+ S+ G+I+
Sbjct: 242 FNRDVYRVSLRENVPPGTTVLQVSATD-QDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
Query: 101 QCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
+ LD+E Y V D + TV I++ + ND P + L + L +
Sbjct: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHS----LLEMILENA 356
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRG--PYEKMFSINDSGHISIVD--LSALNTSTIQ 213
PG++I ++ D D G+ V L+G P+ K+ S + + + + D L T
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPF-KIISSSKNSYKLVTDGTLDREQTPEYN 415
Query: 214 LVVVATDTGNPPRQASVPAIMH 235
+ + ATD G PP +S+ I+H
Sbjct: 416 VTITATDRGKPPLSSSISVILH 437
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 90 SISRQGDISLMQ-CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYP 145
S+S Q + Q DYE ++ T+ A D ++ + ++ + V + ND PR YP
Sbjct: 502 SMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYP 561
Query: 146 QY----ELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSG 197
+P A PG ++ KV A D D G LS L+ +FS+ +G
Sbjct: 562 ALGPDGSALFDMVPRA-AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTG 620
Query: 198 HISIVD-LSALNTSTIQLVVVATDTGNPPRQASVPAIMHF 236
+ L + + +L+V D G PP A+ A +H
Sbjct: 621 EVRTARALGDRDAARQRLLVAVRDGGQPPLSAT--ATLHL 658
>sp|Q9Y5F2|PCDBB_HUMAN Protocadherin beta-11 OS=Homo sapiens GN=PCDHB11 PE=2 SV=1
Length = 797
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 57 NLPVNYVLLTVTTNKPRDLRVKYW----LSNDYGERFSISRQGDISLMQCLDYETEDSYR 112
N VNY LL P+DL + ++ D G F+ ++ LDYE ++
Sbjct: 483 NAQVNYSLL-----PPQDLHLPLASLVSINTDNGHLFA---------LRSLDYEALQAFD 528
Query: 113 FTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLA--DLTPGSVIGK 167
F V ATD +++ A V + V++ ND P YP P L PG ++ K
Sbjct: 529 FRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTK 588
Query: 168 VEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-LSALNTSTIQLVVVATDTG 222
V A DGD G LS L+ +F + +G + LS + + +LVV+ D G
Sbjct: 589 VVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNG 648
Query: 223 NPPRQAS 229
PPR A+
Sbjct: 649 EPPRSAT 655
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 103 LDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADL 159
LD E+ Y T+ TD + T + V +VND P F Y LF+ +
Sbjct: 409 LDRESTAEYNITITVTDLGIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVRE----NN 464
Query: 160 TPGSVIGKVEAADGDKGDRVTLS--------LRGPYEKMFSIN-DSGHISIVDLSALNTS 210
+P IG V A D D G ++ L P + SIN D+GH + L +L+
Sbjct: 465 SPALHIGSVSATDRDSGTNAQVNYSLLPPQDLHLPLASLVSINTDNGH--LFALRSLDYE 522
Query: 211 TIQ---LVVVATDTGNP 224
+Q V ATD G+P
Sbjct: 523 ALQAFDFRVGATDRGSP 539
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 19/152 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTT---NKPRDLRVKYWLSN---DYGERFSISRQ-GD 96
+F + Y V EN + ++L V+ + + + Y S+ D + F I+++ G+
Sbjct: 241 EFEQAFYEVKIRENSILGSLILIVSAWDLDSGTNGEICYTFSHASEDIRKTFEINQKSGE 300
Query: 97 ISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI- 154
I+L LD+ET +SY + ATD + +TV I V++VND P E+ + I
Sbjct: 301 ITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAP-------EITVSSIT 353
Query: 155 -PLADLTPGSVIGKVEAADGDKGD--RVTLSL 183
P+ + TP +V+ D D GD R+ S+
Sbjct: 354 SPIPENTPETVVMVFSIQDIDSGDNGRIVCSI 385
>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1
Length = 4555
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSISR-QGDISL 99
F + YSV LE+LPV V+ + T P DL +V+Y L NDY RF I + G I L
Sbjct: 935 FIPSSYSVKVLEDLPVGTVIAWLETQDP-DLGLGGQVRYSLVNDYNGRFEIDKASGAIRL 993
Query: 100 MQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP---- 155
+ LDYE + Y TV A D +S+ +++ + L P+ P
Sbjct: 994 SKELDYEKQQFYNLTVRAKDKGRP------VSLSSISFVEVEVVDVNENLHTPYFPDFAV 1047
Query: 156 LADLTPGSVIG----KVEAADGDKG--DRVTLSLR-GPYEKMFSIND-SGHISIVD-LSA 206
+ + S IG +V A D D G + S+R G F+I+D SG I+ D L
Sbjct: 1048 VGSVKENSRIGTSVLQVTAHDEDSGRDGEIQYSIRDGSGLGRFNIDDESGVITAADILDR 1107
Query: 207 LNTSTIQLVVVATDTGNPPRQASV 230
T++ L V ATD G P +++
Sbjct: 1108 ETTASYWLTVYATDRGVVPLYSTI 1131
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 103/227 (45%), Gaps = 23/227 (10%)
Query: 13 LVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKP 72
L+ RA D R+ +T+++ + FS N Y+ EN +L V P
Sbjct: 3100 LIARAT--DGGGRFCSSTVLLLLEDVNDNPPVFSSNHYTACVYENTATKALLTRVQAVDP 3157
Query: 73 R---DLRVKYWLSNDYGERFSI-SRQGDISLMQCLDYETEDSYRFTVYATD----TLMTT 124
+ +V Y L + FSI S G I L Q LD E + SY +V ATD +++
Sbjct: 3158 DVGINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSYNISVRATDQSPGQSLSS 3217
Query: 125 SATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLS 182
+V I+V+++ND P F Y + +P D + G+ + V A D G +T
Sbjct: 3218 LTSVTITVLDINDNPPVFERRDYLVTVPE----DTSLGTQVLSVFATSKDIGTNAEITYL 3273
Query: 183 LR-GPYEKMFSIN-DSGHISIVDLSALNTSTIQ---LVVVATDTGNP 224
+R G + F IN +G IS+ L AL+ + LVV A D G P
Sbjct: 3274 IRSGNEQGKFRINPKTGGISV--LEALDYEMCKRFYLVVEAKDGGTP 3318
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 16/195 (8%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKY-WLSNDYGERFSIS-RQGDISLM 100
++F K+ Y +S E P ++ V N P L V+Y L E F I+ R G I
Sbjct: 373 IKFEKDVYDISISEFSPPGVMVAIVKVN-PEPLDVEYKLLPGKDAEYFKINPRSGLIVTA 431
Query: 101 QCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFL-PHIPLADL 159
Q L+ ++ Y+ V +D A V I + + ND P F+ YE F+ +P+
Sbjct: 432 QPLNTVKKEVYKLEV--SDKEGDAKAQVTIGIEDANDHTPEFQETLYETFVNESVPV--- 486
Query: 160 TPGSVIGKVEAADGDKGDR--VTLSLRGPYEKMFSIND-SGHISIVDLSALNTS--TIQL 214
G+ + V A+D DKG+ +T S+ F+IN +G IS + +S T +
Sbjct: 487 --GTNVLTVSASDKDKGENGYITYSIASLNLLPFAINQFTGVISTTEELDFESSPETYRF 544
Query: 215 VVVATDTGNPPRQAS 229
+V A+D G+P R S
Sbjct: 545 IVRASDWGSPYRHES 559
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 28/214 (13%)
Query: 53 SALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYG-ERFSISRQ-GDISLMQCLDYET 107
S EN + +L VT + RD ++Y + + G RF+I + G I+ LD ET
Sbjct: 1050 SVKENSRIGTSVLQVTAHDEDSGRDGEIQYSIRDGSGLGRFNIDDESGVITAADILDRET 1109
Query: 108 EDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
SY TVYATD + ++ V I V +VND P P Y + D+ SV
Sbjct: 1110 TASYWLTVYATDRGVVPLYSTIEVYIEVEDVNDNAPLTSEPIYYPVVMENSPKDV---SV 1166
Query: 165 IGKVEAADGDKGDRVTLSLR---GPYEKMFSIN-DSGHISIVD--LSALNTSTIQLVVVA 218
I +++A D D G L+ R G + F+IN +G I+ L + L V
Sbjct: 1167 I-QIQAEDPDSGSNEKLTYRITSGNPQNFFAINIKTGLITTTSRKLDREQQAEHFLEVTV 1225
Query: 219 TDTGNPPRQASVPAIM----------HFPEAIVQ 242
TD G+ P+Q+++ ++ FPE + Q
Sbjct: 1226 TDGGSSPKQSTIWVVVQVLDENDNKPQFPEKVYQ 1259
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 17/198 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWL-SNDYGERFSIS-RQGDISLMQC 102
F K Y+ S E++ +N +L++ P + Y + D ++F+I G + ++
Sbjct: 2185 FDKPFYTASINEDISINTPILSINATSPEGQGIIYLIIDGDPFQQFNIDFDTGVLKVISP 2244
Query: 103 LDYETEDSYRFTVYATDTLMTTSA--TVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
LDYE Y+ TV A+D L A TV++ V +VND P F P Y L L
Sbjct: 2245 LDYEVMSVYKLTVRASDALTGARAEVTVDLLVDDVNDNPPVFDQPTYNTTLSESSLI--- 2301
Query: 161 PGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHIS-----IVDLSALNTSTIQ-- 213
G+ + ++ + D D G+ L + ++ D HI I+ L+ +Q
Sbjct: 2302 -GTPVLQLVSTDADSGNN-NLVHYQIVQDTYNSTDYFHIDSSSGLILTARMLDHELVQHC 2359
Query: 214 -LVVVATDTGNPPRQASV 230
L V ATD G P + V
Sbjct: 2360 TLKVTATDNGFPSLSSEV 2377
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 103 LDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPG 162
LD E +D Y + A+D L T A V ++V +VND P Y LP D+
Sbjct: 2989 LDREEQDIYFLNITASDGLFVTQAMVEVTVSDVNDNSPVCDQVAYSASLPE----DIPSN 3044
Query: 163 SVIGKVEAADGDKGDR--VTLSLRGPYEKMFSIN-DSGHI-SIVDLSALNTSTIQLVVVA 218
+I KV A D D G + SL G F ++ +SG + ++ L L+ A
Sbjct: 3045 KIILKVSAKDADIGSNGDIRYSLYGSGNSDFFLDPESGELKTLALLDRERVPVYNLIARA 3104
Query: 219 TDTG 222
TD G
Sbjct: 3105 TDGG 3108
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER--------FSISRQ-G 95
F++++YS + E+ + + T+ + +R S GER F I ++ G
Sbjct: 2707 FTQSQYSFTIAEDTSIGSTIDTLRILPNQSVR----FSTVNGERPENNKENVFIIEQETG 2762
Query: 96 DISLMQCLDYETEDSYRFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYELFL 151
I L + LD+E ++ F V AT L + + V++ V+++ND P F YE +
Sbjct: 2763 AIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSSYETII 2822
Query: 152 PHIPLADLTPGSVIGKVEAADGDKG--DRVTLSLRGP--YEKM---FSIN-DSGHISIV- 202
+ + G+ + +V A D D G +VT SL EK+ F+I+ ++G IS +
Sbjct: 2823 ----MEGMPVGTKLAQVRAIDTDWGANGQVTYSLHSDSHLEKVMEAFNIDSNTGWISTLK 2878
Query: 203 DLSALNTSTIQLVVVATDTG 222
DL T VVA+D G
Sbjct: 2879 DLDHETDPTFSFFVVASDLG 2898
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 27/231 (11%)
Query: 27 ALATLIVSKAGTSLRELQFSKNEYSVSALEN-LPVNYVLLTVTTNKPRDLRVKYWLSNDY 85
A+ T++V +A S L F+++ YS S EN + V + + +KY + N
Sbjct: 1965 AMVTIMVKEAMDS--GLHFTQSFYSTSISENSTNITKVAIVNAVGNRLNEPLKYSILNP- 2021
Query: 86 GERFSI-SRQGDISLMQC-LDYETEDSYRFTVYAT---DTLMTTSATVNISVVNVNDWDP 140
G +F I S G I D E ++ Y V A+ D L V +++ +VND P
Sbjct: 2022 GNKFKIKSTSGVIQTTGVPFDREEQELYELVVEASRELDHLRVARVVVRVNIEDVNDNSP 2081
Query: 141 RFRYPQYELFLPHIPLA--DLTPGSVIGKVEAADGDKG--DRVTLSLRGPYEKMFSIN-D 195
F + LP+ D PG++I +V A D DKG VT L+ Y F IN +
Sbjct: 2082 VF------VGLPYYAAVQVDAEPGTLIYRVTAIDKDKGANGEVTYVLQDDY-GHFEINPN 2134
Query: 196 SGHISIVDLSALNTSTIQ--LVVVATDTGNPPRQASVPAIMHFPEAIVQQA 244
SG++ + + + S I + ++A D G P S+ + P IV +A
Sbjct: 2135 SGNVILKEAFNSDLSNIDYGVTILAKDGGTP----SLSTFVELPITIVNKA 2181
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 45 FSKNEYSVSALENLPVNYVLLTVT---TNKPRDLRVKYWLSNDYG-----ERFSI-SRQG 95
F + Y +E +PV L V T+ + +V Y L +D E F+I S G
Sbjct: 2813 FETSSYETIIMEGMPVGTKLAQVRAIDTDWGANGQVTYSLHSDSHLEKVMEAFNIDSNTG 2872
Query: 96 DISLMQCLDYETEDSYRFTVYATDT----LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
IS ++ LD+ET+ ++ F V A+D +++ A V++ V ++ND P F +E++
Sbjct: 2873 WISTLKDLDHETDPTFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVF---AHEVYR 2929
Query: 152 PHIPLADLTPGSVIGKVEAADGD 174
++ +D PG V+ + D D
Sbjct: 2930 GNVKESD-PPGEVVAVLSTLDKD 2951
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDPRFRYPQYELFLPH 153
G I+ + LDYE SY+ + AT+ M ++ATV++ VV+ ND P F + QY L
Sbjct: 1720 GVITTRRALDYEHTSSYQLIIQATNMAGMASNATVSVQVVDENDNPPVFLFSQYSGSLSE 1779
Query: 154 IP-----LADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSALN 208
+ L ++ + AD ++ + + K F DS +I ++ L+
Sbjct: 1780 AAPINSLVRSLDNSPLVIRATDADSNQNALLVYQIVESTAKKFFTVDSSTGAIRTIANLD 1839
Query: 209 TSTI---QLVVVATDTGNPPRQASVP 231
I V D+GNP A P
Sbjct: 1840 HEVIAHFHFHVHVRDSGNPQLTAESP 1865
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTV-TTNKPRDLRVKYWLSNDYG----ERFSIS-RQGDI 97
+FS+ Y V+ E++P + +L + T++ ++ Y + + +F I G +
Sbjct: 1458 EFSQPHYDVTISEDVPPDTEILQIEATDRDEKHKLSYTIHSSIDAISMRKFRIDPSTGVL 1517
Query: 98 SLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
+ LD+E +D + + D A V ++V + ND P F P YE +
Sbjct: 1518 YTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSPYFTNPLYEASV--- 1574
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLSLR---GPYEKMFSINDS-GHISIV---DLSAL 207
GSV+ +V A D DKG+ L G F I G I+I D++A+
Sbjct: 1575 -FESAALGSVVLQVTALDKDKGENAELIYSIEAGNTGNTFKIEPVLGIITISKEPDMTAM 1633
Query: 208 NTSTIQLVVVATDTGNPPRQASV 230
L V TD G+PP A+
Sbjct: 1634 --GQFVLSVKVTDQGSPPMSATA 1654
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 45 FSKNEYSVSALENLPVNYVLLTV-TTNKP--RDLRVKYWL--SNDYGERFSIS-RQGDIS 98
F + +Y V+ E+ + +L+V T+K + + Y + N+ G +F I+ + G IS
Sbjct: 3235 FERRDYLVTVPEDTSLGTQVLSVFATSKDIGTNAEITYLIRSGNEQG-KFRINPKTGGIS 3293
Query: 99 LMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQY 147
+++ LDYE + V A D ++T+ATV+I + +VND PRF Y
Sbjct: 3294 VLEALDYEMCKRFYLVVEAKDGGTPALSTAATVSIDLTDVNDNPPRFSQDVY 3345
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
G I + + LD E Y +V TD V I+V++ ND P F P Y++ +
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNVAVTQVFITVLDNNDNGPEFSQPHYDVTISE- 1470
Query: 155 PLADLTPGSVIGKVEAADGDKGDRVTLSLR 184
D+ P + I ++EA D D+ +++ ++
Sbjct: 1471 ---DVPPDTEILQIEATDRDEKHKLSYTIH 1497
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRGPYEKMFSINDSGHISIVDLSAL 207
E+F+ + + D PG VIGK+ A D D D +T +L+ + +F +N S I+ L L
Sbjct: 3554 EIFI--VTMEDDFPGGVIGKIHATDQDMYDVLTFALKSEQKSLFKVN-SHDGKIIALGGL 3610
Query: 208 NTSTIQLVVVATD 220
++ L V +D
Sbjct: 3611 DSGKYVLNVSVSD 3623
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 50 YSVSALENLPVNYVLLTVTTNKPR-----DLRVKYWLSNDYGERFSISRQGDISLMQCLD 104
YS S E++P N ++L V+ D+R + S + + F G++ + LD
Sbjct: 3033 YSASLPEDIPSNKIILKVSAKDADIGSNGDIRYSLYGSGN-SDFFLDPESGELKTLALLD 3091
Query: 105 YETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGS 163
E Y ATD S+TV + + +VND P F Y + + +
Sbjct: 3092 RERVPVYNLIARATDGGGRFCSSTVLLLLEDVNDNPPVFSSNHYTACV----YENTATKA 3147
Query: 164 VIGKVEAADGDKG--DRVTLSLRGPYEKMFSINDSGHISIVD--LSALNTSTIQLVVVAT 219
++ +V+A D D G +V SL +FSI+ S + +++ L S+ + V AT
Sbjct: 3148 LLTRVQAVDPDVGINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSYNISVRAT 3207
Query: 220 D 220
D
Sbjct: 3208 D 3208
>sp|Q5DRD3|PCDBF_PANTR Protocadherin beta-15 OS=Pan troglodytes GN=PCDHB15 PE=3 SV=1
Length = 787
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + ++ LDYE ++ F V ATD +++ A V + V++ ND P YP
Sbjct: 511 GHLFALRSLDYEALQAFEFHVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 570
Query: 152 PH---IPLADLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD- 203
P +P A PG V+ KV A DGD G LS L+ +F + +G +
Sbjct: 571 PCTELVPRA-AEPGYVVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARL 629
Query: 204 LSALNTSTIQLVVVATDTGNPPRQASV 230
LS + + +LVV+ D G PPR A+
Sbjct: 630 LSERDVAKHRLVVLVKDNGEPPRSATA 656
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 21/138 (15%)
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD ET Y T+ TD + T + + V +VND P F Y LF+ +
Sbjct: 408 ALDRETRAEYNITITITDLGTPRLKTQHNITVLVSDVNDNAPAFTQTSYTLFVRE----N 463
Query: 159 LTPGSVIGKVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSA 206
+P IG V A D D G +VT SL P + + SIN D+GH + +D A
Sbjct: 464 NSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINTDNGHLFALRSLDYEA 523
Query: 207 LNTSTIQLVVVATDTGNP 224
L + V ATD G+P
Sbjct: 524 LQ--AFEFHVGATDRGSP 539
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVK---------YWLSNDYGERFSISR- 93
+F++ Y V EN PV +++ V+ RDL Y+ S + + F +S
Sbjct: 241 EFAQALYEVQVPENSPVGSLVVKVSA---RDLDTGTNGEISYSLYYSSEEINKPFELSSL 297
Query: 94 QGDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
G+I L++ LD+ET SY + A+D ++ +V++ V++VND +P+ +
Sbjct: 298 SGEIRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVND-----NFPELSISSL 352
Query: 153 HIPLADLTPGSVIGKVEAADGDKGD 177
P+ + +P + + D D G+
Sbjct: 353 TSPIPENSPETEVALFRIRDRDSGE 377
>sp|Q5DRD2|PCDB2_PANTR Protocadherin beta-2 OS=Pan troglodytes GN=PCDHB2 PE=3 SV=1
Length = 798
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 95 GDISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
G + +Q LDYE ++ F V A D +++ A V + V++ ND P YP
Sbjct: 513 GHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVLVLDANDNSPFVLYPLQNGSA 572
Query: 152 PHIPLADLT--PGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSI-NDSGHISIVD-L 204
P L PG ++ KV A DGD G LS L+ +F + +G + L
Sbjct: 573 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 632
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
S + + +LVV+ D G PPR A+ A +H
Sbjct: 633 SERDAAKHRLVVLVKDNGEPPRSAT--ATLH 661
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 102 CLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD ET Y T+ TD + T + + V +VND P F Y LF+ +
Sbjct: 410 ALDRETRSEYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE----N 465
Query: 159 LTPGSVIGKVEAADGDKGD--RVTLSLRGPYE------KMFSIN-DSGH---ISIVDLSA 206
+P IG V A D D G +VT SL P + + SIN D+GH + +D A
Sbjct: 466 NSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEA 525
Query: 207 LNTSTIQLVVVATDTGNP 224
L + V A D G+P
Sbjct: 526 LQ--AFEFRVGAADRGSP 541
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 28/199 (14%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSN---DYGERFSIS-R 93
+F+K Y V E+ PV + V+ RDL + Y S D + F +S +
Sbjct: 243 EFAKLLYEVQIPEDSPVGSQVAIVSA---RDLDIGTNGEISYAFSQASEDIRKTFRLSAK 299
Query: 94 QGDISLMQCLDYETEDSYRFTVYATD-TLMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
G++ L Q LD+E+ +Y + ATD ++ + V + V+++ND P +
Sbjct: 300 SGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPEL---TMSTLIN 356
Query: 153 HIP--LADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISIVDLSALN 208
IP L D ++I +D D GD R+ S++ + ++V +AL+
Sbjct: 357 QIPENLQD----TLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALD 412
Query: 209 TST---IQLVVVATDTGNP 224
T + + TD G P
Sbjct: 413 RETRSEYNITITVTDFGTP 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,178,233
Number of Sequences: 539616
Number of extensions: 5804564
Number of successful extensions: 18321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 231
Number of HSP's that attempted gapping in prelim test: 16732
Number of HSP's gapped (non-prelim): 1180
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)