RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4697
(383 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 111 bits (280), Expect = 3e-29
Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%)
Query: 44 QFSKNEY--SVSALENLPVNYVLLTVTTNKPRDL---RVKYWL-SNDYGERFSISRQ-GD 96
F+ + + + E+ PV + + RD+ + + + + F++ G
Sbjct: 7 FFTNHFFDTYLLISEDTPVGSSVTQLLA---RDMDNDPLVFGVSGEEASRFFAVEPDTGV 63
Query: 97 ISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPL 156
+ L Q LD ET+ + +D + VNI V +VND P F Y + +P
Sbjct: 64 VWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE--- 120
Query: 157 ADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTS 210
+ G+ I V A D D G V S + P F+I+ G ++++ L T
Sbjct: 121 -NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-FFAIDSARGIVTVI--QELDYEVTQ 176
Query: 211 TIQLVVVATDTGNPPR 226
QL V ATD
Sbjct: 177 AYQLTVNATDQDKTRP 192
Score = 67.2 bits (165), Expect = 3e-13
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSISRQ-GDIS 98
F YSV EN PV + V P DL V Y F+I G ++
Sbjct: 108 TFHNQPYSVRIPENTPVGTPIFIVNATDP-DLGAGGSVLYSFQPP-SPFFAIDSARGIVT 165
Query: 99 LMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVND 137
++Q LDYE +Y+ TV ATD ++T A + I + ++ D
Sbjct: 166 VIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 111 bits (278), Expect = 1e-26
Identities = 46/280 (16%), Positives = 102/280 (36%), Gaps = 32/280 (11%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-SRQGD 96
F V E+L ++++ +D ++ Y++ ND ++ G
Sbjct: 486 FFVPAVSRVDVSEDLSRGEKIISLV---AQDPDKQQIQKLSYFIGNDPARWLTVNKDNGI 542
Query: 97 ISLMQCLDYETE----DSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYEL 149
++ LD E+E ++Y + TD + T + T+ + V++VND P + +
Sbjct: 543 VTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 602
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDK---GDRVTLSLRGPYEKMFSIND--SGHISIV-D 203
+ +D D +SL + + G ++
Sbjct: 603 ---------CDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSP 653
Query: 204 LSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQASSKLNSGTSSTVLIILGVV 263
L + V+ +D N P+ V A + E + KL G +++++
Sbjct: 654 TQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGS 713
Query: 264 LIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKNDSFLSN 303
++ L + +LL+L++ + K K ++++ F
Sbjct: 714 VLALLILFLLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYG 753
Score = 110 bits (276), Expect = 2e-26
Identities = 41/213 (19%), Positives = 86/213 (40%), Gaps = 32/213 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-----S 92
F Y+ EN + + + ++ D+ + Y + + G F+I S
Sbjct: 375 IFDPKTYTALVPEN-EIGFEVQRLSVTD-LDMPGTPAWQAVYKIRVNEGGFFNITTDPES 432
Query: 93 RQGDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ 146
QG ++ + LD+E Y + + L T++ATV ++V +VN+ P F
Sbjct: 433 NQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV 491
Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIV- 202
+ + DL+ G I + A D DK +++ + + ++N D+G ++
Sbjct: 492 SRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNG 547
Query: 203 ----DLSALNTSTIQLVVVATDTGNPPRQASVP 231
+ + +T ++++ TD G +
Sbjct: 548 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGT 580
Score = 90.7 bits (225), Expect = 6e-20
Identities = 50/255 (19%), Positives = 95/255 (37%), Gaps = 35/255 (13%)
Query: 5 DDFLQPITLVVRAIQYDNQDRYALAT-----LIVSKAGTSLR--ELQFSKNEYSVSALEN 57
+ V + ++ + + + L + T L+ + + VS E
Sbjct: 110 RGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER 169
Query: 58 LPVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQCLDYETEDSY 111
P L+ + +NK R +V Y ++ N F I + G + + + LD E D Y
Sbjct: 170 GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY 229
Query: 112 RFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
+ +A + + I+V++ ND P+F + + + PG+ + V
Sbjct: 230 VLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE----GVQPGTQVMAV 285
Query: 169 EAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSALN---TSTIQL 214
A D D ++ S+ P +F+IN ++G IS++ + L+ L
Sbjct: 286 SATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI-GTGLDREKFPEYTL 344
Query: 215 VVVATDTGNPPRQAS 229
V ATD
Sbjct: 345 TVQATDLEGAGLSVE 359
Score = 88.0 bits (218), Expect = 5e-19
Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 44/222 (19%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWL-----SNDYGERF 89
+F+++ + S E + ++ V+ D + Y + F
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSAT---DEDDNIDSLNGVLSYSILKQDPEEPIPNLF 318
Query: 90 SISRQ-GDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRY 144
+I+R+ G ISL+ LD E Y TV ATD ++ I + + ND P F
Sbjct: 319 TINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378
Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSINDS---- 196
Y +P + G + ++ D D + +R F+I
Sbjct: 379 KTYTALVP-----ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 433
Query: 197 -GHISIVDLSALN---TSTIQLVVVATDT---GNPPRQASVP 231
G ++ L+ L + + P ++
Sbjct: 434 QGILTTA--KGLDFELRKQYVLQITVENAEPFSVPLPTSTAT 473
Score = 67.2 bits (164), Expect = 3e-12
Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 37/218 (16%)
Query: 44 QFSKNEYSVSALE-NLPVNYVLLTVTTNKPRDL-RVKYWLSNDYGERFSISRQGDISLMQ 101
FS EY S L L V + Y + + F + G + + +
Sbjct: 36 GFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSR---FRVLPDGTVLVKR 92
Query: 102 CLDYETEDSYRFTVYATDTLMTT-----------------SATVNISVVNVNDWDPRFRY 144
+ + + + + + + S + + V+ + +
Sbjct: 93 HVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKR 152
Query: 145 PQYELFLPHIPLA---DLTPGSVIGKVEAADGDKGDRVTLSLRG-----PYEKMFSIN-D 195
+ + +P I ++ + +++ ++ D+ ++V S+ G P + +F I +
Sbjct: 153 KKRDWVIPPIKVSENERGPFPKRLVQIK-SNKDRFNKVYYSITGQGADNPPQGVFRIEWE 211
Query: 196 SGHISIVDLSAL---NTSTIQLVVVATDTGNPPRQASV 230
+G + + L L A P + +
Sbjct: 212 TGWMLV--TRPLDREEYDKYVLSSHAVSENGSPVEEPM 247
Score = 54.5 bits (131), Expect = 3e-08
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 7/142 (4%)
Query: 109 DSYRFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKV 168
R L+ V +V+ P F +Y + +L G +GKV
Sbjct: 4 TRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIF---SVNRRELERGRKLGKV 60
Query: 169 EAADGDKGDRVTLSLRGPYEKMFSINDSGHISIV-DLSALNTSTIQLVVVATDTGNPPRQ 227
+D + F + G + + + + +
Sbjct: 61 NFSDCTTRKHGLYDVGDSR---FRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTN 117
Query: 228 ASVPAIMHFPEAIVQQASSKLN 249
+V + H SSKL
Sbjct: 118 IAVASKRHRSGEEAHSRSSKLP 139
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 109 bits (275), Expect = 2e-26
Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 32/212 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-----S 92
F Y+ EN + + + ++ D+ + Y + + G F+I S
Sbjct: 226 IFDPKTYTALVPEN-EIGFEVQRLSVTD-LDMPGTPAWQAVYKIRVNEGGFFNITTDPES 283
Query: 93 RQGDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ 146
QG ++ + LD+E Y + + L T++ATV ++V +VN+ P F
Sbjct: 284 NQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV 342
Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIV- 202
+ + DL+ G I + A D DK +++ + + ++N D+G ++
Sbjct: 343 SRVDVS----EDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNG 398
Query: 203 ----DLSALNTSTIQLVVVATDTGNPPRQASV 230
+ + +T ++++ TD G +
Sbjct: 399 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 430
Score = 94.7 bits (236), Expect = 3e-21
Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 28/209 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDI 97
+ VS E P L+ + +NK R +V Y ++ + F I + G +
Sbjct: 7 DWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWM 66
Query: 98 SLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHI 154
+ + LD E D Y + +A + + I+V++ ND P+F + +
Sbjct: 67 LVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE- 125
Query: 155 PLADLTPGSVIGKVEAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVD 203
+ PG+ + V A D D ++ S+ P +F+IN ++G IS++
Sbjct: 126 ---GVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI- 181
Query: 204 LSALN---TSTIQLVVVATDTGNPPRQAS 229
+ L+ L V ATD
Sbjct: 182 GTGLDREKFPEYTLTVQATDLEGAGLSVE 210
Score = 92.8 bits (231), Expect = 1e-20
Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 26/204 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYGERFSI-SRQGDISL 99
F V E+L ++++ P + ++ Y++ ND ++ G ++
Sbjct: 337 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTG 396
Query: 100 MQCLDYETE----DSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLP 152
LD E+E ++Y + TD + T + T+ + V++VND P + +
Sbjct: 397 NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQ 456
Query: 153 HIPLADLTPGSVIGKVEAADGDKGD---RVTLSLRGPYEKMFSINDS--GHISIV-DLSA 206
P + + +D D +SL + + G ++
Sbjct: 457 -------NPEPQV--LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQ 507
Query: 207 LNTSTIQLVVVATDTGNPPRQASV 230
L + V+ +D N P+ V
Sbjct: 508 LKKGDYSIYVLLSDAQNNPQLTVV 531
Score = 84.7 bits (210), Expect = 5e-18
Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 44/222 (19%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWL-----SNDYGERF 89
+F+++ + S E + ++ V+ D + Y + F
Sbjct: 113 KFTQDVFRGSVREGVQPGTQVMAVSAT---DEDDNIDSLNGVLSYSILKQDPEEPIPNLF 169
Query: 90 SISRQ-GDISLM-QCLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRY 144
+I+R+ G ISL+ LD E Y TV ATD ++ I + + ND P F
Sbjct: 170 TINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 229
Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSI-----ND 195
Y +P + G + ++ D D + +R F+I ++
Sbjct: 230 KTYTALVP-----ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 284
Query: 196 SGHISIVDLSALN---TSTIQLVVVATDT---GNPPRQASVP 231
G ++ L+ L + + P ++
Sbjct: 285 QGILTTA--KGLDFELRKQYVLQITVENAEPFSVPLPTSTAT 324
Score = 36.5 bits (85), Expect = 0.012
Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 16/101 (15%)
Query: 140 PRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG-----PYEKMFSIN 194
+ P ++ + ++++ + D+ ++V S+ G P + +F I
Sbjct: 6 HDWVIPPIKVSENE----RGPFPKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 195 -DSGHISIVDLSAL---NTSTIQLVVVATDTGNPPRQASVP 231
++G + + L L A P + +
Sbjct: 61 WETGWMLV--TRPLDREEYDKYVLSSHAVSENGSPVEEPME 99
Score = 36.5 bits (85), Expect = 0.012
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 82 SNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTL-MTTSATVNISVVNVNDWDP 140
+D + + +G L+ + Y V +D VN +V +
Sbjct: 484 GSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAI 543
Query: 141 RFR 143
+ +
Sbjct: 544 KCQ 546
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 109 bits (274), Expect = 3e-26
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 33/213 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSI-----S 92
F+ + Y EN VN + T+ D + Y + ND ++F + +
Sbjct: 220 VFNPSTYQGQVPEN-EVNARIATLKVTD-DDAPNTPAWKAVYTVVNDPDQQFVVVTDPTT 277
Query: 93 RQGDISLMQCLDYETEDSYRFTVYATDT------LMTTSATVNISVVNVNDWDPRFRYPQ 146
G + + LD+E + Y V + L+ ++ATV + VV+VN+ P F +
Sbjct: 278 NDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAE 336
Query: 147 YELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHISIV- 202
+ +P D G I A + D ++T + IN ++G I
Sbjct: 337 RRVEVPE----DFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRA 392
Query: 203 -----DLSALNTSTIQLVVVATDTGNPPRQASV 230
D + ST +++ATD G+P +
Sbjct: 393 EMDREDAEHVKNSTYVALIIATDDGSPIATGTG 425
Score = 92.4 bits (230), Expect = 1e-20
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 28/206 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYGERFSISRQ-GDISL 99
F E V E+ V + + T +P D ++ Y + D I+ + G I
Sbjct: 331 IFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFT 390
Query: 100 MQCLDYET-----EDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFL 151
+D E +Y + ATD + T + T+ + +++VND P +
Sbjct: 391 RAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQ 450
Query: 152 PHIPLADLTPGSVIGKVEAADGDKG---DRVTLSLRGPYEKMFSI---NDSGHISIV-DL 204
P + D D T L ++I + + I+
Sbjct: 451 R-------NPQPH--IITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPR 501
Query: 205 SALNTSTIQLVVVATDTGNPPRQASV 230
L ++ + D N + ++
Sbjct: 502 KDLEIGEYKIHLKLADNQNKDQVTTL 527
Score = 88.5 bits (220), Expect = 2e-19
Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 44/222 (19%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWL-----SNDYGERF 89
+F++ + S E ++ V+ D + Y + + F
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSAT---DADDDVNTYNAAIAYTIVSQDPELPHKNMF 163
Query: 90 SISRQ-GDISLMQ-CLDYETEDSYRFTVYATDTL---MTTSATVNISVVNVNDWDPRFRY 144
+++R G IS++ LD E+ +Y V A D ++T+A I+V ++ND P F
Sbjct: 164 TVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP 223
Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLSLRGPYEKMFSI-----ND 195
Y+ +P + + I ++ D D + + ++ ++ F + +
Sbjct: 224 STYQGQVP-----ENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTN 278
Query: 196 SGHISIVDLSALN---TSTIQLVVVATDTG---NPPRQASVP 231
G + L+ L V + ++
Sbjct: 279 DGILKTA--KGLDFEAKQQYILHVRVENEEPFEGSLVPSTAT 318
Score = 86.2 bits (214), Expect = 2e-18
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 50 YSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQ 101
+S EN + L+ + +N+ ++ +V Y ++ ++ F I R+ G + + Q
Sbjct: 5 PPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD E Y +A + + + I+V + ND P F +E +
Sbjct: 65 PLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----G 120
Query: 159 LTPGSVIGKVEAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSAL 207
PG+ + KV A D D + ++ P++ MF++N D+G IS++ S L
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL-TSGL 179
Query: 208 N---TSTIQLVVVATDTGNPPRQAS 229
+ T LVV A D +
Sbjct: 180 DRESYPTYTLVVQAADLQGEGLSTT 204
Score = 41.9 bits (99), Expect = 3e-04
Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 76 RVKYWLSNDYGERFSISRQ---GDISLMQCLDYETEDSYRFTVYATDT-LMTTSATVNIS 131
L++ ++I + ++Q Y+ + D T+++
Sbjct: 471 PFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVH 530
Query: 132 VVNVNDWDPRFRYPQY 147
V + +
Sbjct: 531 VCDCEGTVNNCMKAHH 546
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 104 bits (262), Expect = 8e-25
Identities = 40/217 (18%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYW-LSNDYGERFSI----- 91
+F+ + EN V+ ++ +T +D Y D RF+I
Sbjct: 222 EFTAMTFYGEVPEN-RVDVIVANLTVTD-KDQPHTPAWNAAYRISGGDPTGRFAILTDPN 279
Query: 92 SRQGDISLMQCLDYETEDSYRFTVYATDTLM---------TTSATVNISVVNVNDWDPRF 142
S G +++++ +D+ET + TV A + + ++ATV+++V++VN+ +P F
Sbjct: 280 SNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYF 338
Query: 143 RYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSIN-DSGHI 199
+ L G+++ + A D D+ + + I+ +G I
Sbjct: 339 APNPKIIRQEE----GLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQI 394
Query: 200 SIV-----DLSALNTSTIQLVVVATDTGNPPRQASVP 231
+ + + + + +A+D G PP +
Sbjct: 395 TTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 431
Score = 91.2 bits (227), Expect = 3e-20
Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGERFSISRQ-GD 96
F+ N + E L +L T+T +D ++Y +D I G
Sbjct: 337 YFAPNPKIIRQEEGLHAGTMLTTLT---AQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQ 393
Query: 97 ISLMQCLDYET----EDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYEL 149
I+ + LD E+ + Y T A+D M+ + T+ I ++++ND P+ + E
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAET 453
Query: 150 FLPHIPLADLTPGSVIGKVEAADGDKG---DRVTLSLR---GPYEKMFSIND-SGHISIV 202
P S+ + A D D L ++ ++IN +G + +
Sbjct: 454 ------CETPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQL 505
Query: 203 --DLSALNTSTIQLVVVATDTGNPPRQASV 230
+ L ++ ++ TD+GNPP+
Sbjct: 506 NLKIKFLEAGIYEVPIIITDSGNPPKSNIS 535
Score = 86.6 bits (215), Expect = 1e-18
Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 40/220 (18%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL--------RVKYWL-----SNDYGERFS 90
+F ++ S E ++TVT D ++Y + S F+
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTA---IDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 91 ISRQ-GDISLM-QCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNVNDWDPRF 142
I+ + GDI + LD E Y + ATD ++ +AT I+V +VND P F
Sbjct: 164 INNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF 223
Query: 143 RYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD----RVTLS-LRGPYEKMFSI---N 194
+ +P + ++ + D D+ G F+I
Sbjct: 224 TAMTFYGEVP-----ENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDP 278
Query: 195 DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQASVP 231
+S + + ++ L V A + + P
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHP 318
Score = 79.7 bits (197), Expect = 2e-16
Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 29/198 (14%)
Query: 52 VSALENLPVNYVLL--TVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQCL 103
++ EN + + +++ ++L ++Y ++ ++ F I+ G +S+ + L
Sbjct: 7 INLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
D E + +A D + + I+V+++ND P F + + +P
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE----GSK 122
Query: 161 PGSVIGKVEAADGDKGD----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSALN-- 208
PG+ + V A D D + + + P MF+IN ++G I V + L+
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV-AAGLDRE 181
Query: 209 -TSTIQLVVVATDTGNPP 225
L++ ATD P
Sbjct: 182 KVQQYTLIIQATDMEGNP 199
Score = 40.0 bits (94), Expect = 0.001
Identities = 7/72 (9%), Positives = 19/72 (26%), Gaps = 5/72 (6%)
Query: 82 SNDYGERFSISRQGD--ISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVN 136
++I+R L + + Y + TD + + + + V +
Sbjct: 486 PVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCD 545
Query: 137 DWDPRFRYPQYE 148
+
Sbjct: 546 SNGDCTDVHHHH 557
Score = 31.5 bits (72), Expect = 0.42
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DSGHISIVDLSAL---N 208
+ G ++ D+ + S+ G P +F IN SG +S+ L
Sbjct: 13 SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV--TKPLDREL 70
Query: 209 TSTIQLVVVATDTGNPPRQASV 230
+ L A D + +
Sbjct: 71 IARFHLRAHAVDINGNQVENPI 92
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 98.6 bits (246), Expect = 2e-24
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 50 YSVSALENLPVNYVLLTVTT--NKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
++S EN + V N+ ++ +V Y ++ F I R+ G + + Q
Sbjct: 5 AAISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD E Y +A + + + I+V + ND P F +E +
Sbjct: 65 PLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----G 120
Query: 159 LTPGSVIGKVEAADGDKGD-----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSAL 207
PG+ + KV A D D + ++ P++ MF++N D+G IS++ S L
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL-TSGL 179
Query: 208 ---NTSTIQLVVVATDTGNPPRQASVPAI 233
+ T LVV A D + A+
Sbjct: 180 DRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Score = 54.3 bits (131), Expect = 8e-09
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 22/108 (20%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWLSN-----DYGERF 89
+F++ + S E ++ V+ D + Y + + + F
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSAT---DADDDVNTYNAAIAYTIVSQDPELPHKNMF 163
Query: 90 SISRQ-GDIS-LMQCLDYETEDSYRFTVYATD---TLMTTSATVNISV 132
+++R G IS L LD E+ +Y V A D ++T+A I+V
Sbjct: 164 TVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 99.7 bits (249), Expect = 2e-23
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKY--WLSNDYGERFSI-SRQGDISLM 100
QF Y EN + ++++ D ++Y F+I G + L
Sbjct: 218 QFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA 277
Query: 101 QCLDYET---EDSYRFTVYATD--TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIP 155
+ LD+E Y V AT+ +TS + I V +VND P+F P Y+ +
Sbjct: 278 KELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHN--VD 335
Query: 156 LADLTPGSVIGKVEAADGDKGD--RVTLSLRGPYEKMFSINDSGHISIVDLSALN----T 209
D+ G+ I +V+A D D G + + + F+++ +G I L+
Sbjct: 336 -EDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH---FAVDSNGIIVN--NKQLDADNNN 389
Query: 210 STIQLVVVATDTGNPPRQASV 230
+ + +V A D G PP+
Sbjct: 390 AYYEFIVTAKDKGEPPKSGVA 410
Score = 87.0 bits (216), Expect = 5e-19
Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 30/208 (14%)
Query: 44 QFSKNE--YSVSALENLPVNYVLLTVTTNKPRDL----RVKY-WLSNDYGERFSI-SRQG 95
F N P N + T+ RD + Y + + G RF + R G
Sbjct: 110 YFINRPLPMQAVVQLNAPPNTPVFTLQA---RDPDTDHNIHYFIVRDRTGGRFEVDERSG 166
Query: 96 DISLMQCLDYETEDSYRFTVYATD-------TLMTTSATVNISVVNVNDWDPRFRYPQYE 148
+ ++ + Y V A D ++ +S+V P+F P YE
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV-GGKRAPQFYMPSYE 225
Query: 149 LFLPHIPLADLTPGSVIGKVEAADGDKGD-RVTLSLRGPYEKMFSIN-DSGHISIVDL-- 204
+P + S I ++A + R TL +G F+I SG + +
Sbjct: 226 AEIPE----NQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELD 281
Query: 205 --SALNTSTIQLVVVATDTGNPPRQASV 230
L+V AT+ + SV
Sbjct: 282 FEDLRQPHVYSLIVTATE-DSGGFSTSV 308
Score = 67.3 bits (165), Expect = 1e-12
Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 32/181 (17%)
Query: 76 RVKYWLS-NDYGERFSISRQ---------GDISLMQCLDYE------TEDSYRFTVYATD 119
+ + L E F I G + + + DYE T D +
Sbjct: 26 KSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGH 85
Query: 120 T---LMTTSATVNISVVNVNDWDPRFRYPQ--YELFLPHIPLADLTPGSVIGKVEAADGD 174
T + V I V +VND P F + + + P + + ++A D D
Sbjct: 86 NAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQL----NAPPNTPVFTLQARDPD 141
Query: 175 KGDRVTLSL-RGPYEKMFSIN-DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQAS 229
+ + R F ++ SG + L V A D
Sbjct: 142 TDHNIHYFIVRDRTGGRFEVDERSGVVRTR--GTDLFQLDMEYVLYVKAEDQNGKVDDRR 199
Query: 230 V 230
Sbjct: 200 F 200
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 92.8 bits (231), Expect = 3e-22
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 22/202 (10%)
Query: 47 KNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS-NDYGERFSISRQ-GDISLMQCLD 104
N + + P+ + + +T++ + Y + F + GDI + LD
Sbjct: 4 WNRMHIREEIDSPLPHHVGKLTSSVG-NKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62
Query: 105 YETEDSYRFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
E + Y T + D + + I V ++ND P F + +P
Sbjct: 63 REKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPE----MSR 118
Query: 161 PGSVIGKVEAADGDKGD-----RVTLSLRGPYEKMFSINDSGHISIVDLSAL---NTSTI 212
G+ + KV A D D VT + E F+++DSG I + L + S
Sbjct: 119 LGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-YFTVDDSGVI-FTARADLDRESQSAY 176
Query: 213 QLVVVATD-TGNPPRQASVPAI 233
+++V A D G ++ I
Sbjct: 177 EIIVKAKDALGLTGESSTATVI 198
Score = 59.6 bits (145), Expect = 9e-11
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVT------TNKPRDLRVKYWLSNDYGERFSISRQ-GD 96
F + ++ S E + + VT V Y + E F++
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-NEYFTVDDSGVI 161
Query: 97 ISLMQCLDYETEDSYRFTVYATDTL----MTTSATVNISV 132
+ LD E++ +Y V A D L +++ATV I +
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRL 201
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 94.8 bits (236), Expect = 3e-22
Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 26/207 (12%)
Query: 44 QFSKNE--YSVSALENLPVNYVLLTVTTNKP---RDLRVKYWLSNDYGERFSISRQ-GDI 97
F N P N + T+ P ++ + + G RF + + G +
Sbjct: 105 YFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFI-VRDRTGGRFEVDERSGVV 163
Query: 98 SLMQCLDYETEDSYRFTVYATD-------TLMTTSATVNISVVNVNDWDPRFRYPQYELF 150
++ + Y V A D ++ +S+V P+F P YE
Sbjct: 164 RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE 222
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGD-RVTLSLRGPYEKMFSIN-DSGHISIVDL---- 204
+P + S I ++A + R TL +G F+I SG + +
Sbjct: 223 IPE----NQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 278
Query: 205 SALNTSTIQLVVVATDTGNPPRQASVP 231
L+V AT+ + SV
Sbjct: 279 DLRQPHVYSLIVTATE-DSGGFSTSVD 304
Score = 75.1 bits (185), Expect = 2e-15
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 83 NDYGERFSISRQGDISLMQCLDYE------TEDSYRFTVYATDTL---MTTSATVNISVV 133
D ++ G + + + DYE T D + T + V I V
Sbjct: 38 RDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVK 97
Query: 134 NVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS-LRGPYEKMFS 192
+VND P F + + L + P + + ++A D D + +R F
Sbjct: 98 DVNDEPPYFINRPLPMQAV-VQL-NAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFE 155
Query: 193 INDSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQAS 229
+++ + + L V A D
Sbjct: 156 VDERSGV-VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194
Score = 69.7 bits (171), Expect = 1e-13
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWL--SNDYGERFSI-SRQGDISLM 100
QF Y EN + ++++ D ++Y L F+I G + L
Sbjct: 213 QFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA 272
Query: 101 QCLDYETEDS---YRFTVYATDTL--MTTSATVNISVVNVND 137
+ LD+E Y V AT+ +TS + I V +VND
Sbjct: 273 KELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVND 314
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 91.9 bits (228), Expect = 1e-21
Identities = 42/231 (18%), Positives = 57/231 (24%), Gaps = 44/231 (19%)
Query: 43 LQFSKNEYSVSALENLPVNYVLLTVT-TNKPRD----------LRVKYWLSNDYGERFSI 91
L FS++ Y + LL V + L Y I
Sbjct: 1 LYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRI 60
Query: 92 -SRQGDISLMQCLDYETEDSYRF--------TVYATDTL-----------MTTSATVNIS 131
G + L + LD+ + + TVY L A V S
Sbjct: 61 QEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFS 120
Query: 132 VVNVNDWDPRFRYPQYELFLPHIPLA----DLTPGSVIGKVEAADGDKGD--RVTLSLRG 185
N + P+ F P + PG+ V L
Sbjct: 121 FFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLE 180
Query: 186 PYEKMFSIN-DSGHISIVDLSAL---NTSTIQLVVVATD-TGNPPRQASVP 231
F DS +S AL +LV V T G VP
Sbjct: 181 GEGLPFRSAPDSLEVST--RWALDREQREKYELVAVCTVHAGAREEVVMVP 229
Score = 73.4 bits (180), Expect = 4e-15
Identities = 24/114 (21%), Positives = 33/114 (28%), Gaps = 10/114 (8%)
Query: 38 TSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDL----RVKYWLSNDYGERFSI-S 92
REL F + S EN P + L V Y L G F
Sbjct: 132 LKPRELCFPETRPSFRIRENRPPGTFHQFRLLP-VQFLCPQISVAYRLLEGEGLPFRSAP 190
Query: 93 RQGDISLMQCLDYETEDSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRF 142
++S LD E + Y T ++V + +D P F
Sbjct: 191 DSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 90.1 bits (224), Expect = 2e-21
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 29/201 (14%)
Query: 52 VSALENLPVNYVLLTVTT--NKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQCL 103
++ EN + V ++ ++L ++Y ++ ++ F I+ G +S+ + L
Sbjct: 7 INLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT 160
D E + +A D + + I+V+++ND P F + + +P
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE----GSK 122
Query: 161 PGSVIGKVEAADGDKGD----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSAL--- 207
PG+ + V A D D + + + P MF+IN ++G I V + L
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV-AAGLDRE 181
Query: 208 NTSTIQLVVVATDTGNPPRQA 228
L++ ATD P
Sbjct: 182 KVQQYTLIIQATDMEGNPTYG 202
Score = 55.8 bits (135), Expect = 2e-09
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL--------RVKYWL-----SNDYGERFS 90
+F ++ S E ++TVT D ++Y + S F+
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAI---DADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 91 ISRQ-GDI-SLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISV 132
I+ + GDI ++ LD E Y + ATD ++ +AT I+V
Sbjct: 164 INNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 213
Score = 40.4 bits (95), Expect = 4e-04
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 160 TPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DSGHISIVDLSAL---N 208
+ G ++ D+ + S+ G P +F IN SG +S+ L
Sbjct: 13 SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV--TKPLDREL 70
Query: 209 TSTIQLVVVATDTGNPPRQASVP 231
+ L A D + +
Sbjct: 71 IARFHLRAHAVDINGNQVENPID 93
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 88.1 bits (219), Expect = 1e-20
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 23/191 (12%)
Query: 56 ENLPVNYVLLTVTTNKP--RDLRVKYWLS-NDYGERFSISRQ-GDISLMQCLDYETEDSY 111
E +Y + + D +KY LS + G+ F I+ GDI + LD E + Y
Sbjct: 12 EYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVY 71
Query: 112 RFTVYATDTL----MTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
A + + + I + ++ND +P F Y +P G+ + +
Sbjct: 72 ILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPE----MADVGTFVVQ 127
Query: 168 VEAADGDKGD-----RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQLVVVA 218
V A D D +V S+ + FS+ ++G I L + N Q+V+ A
Sbjct: 128 VTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGIIKTA-LLNMDRENREQYQVVIQA 185
Query: 219 TDTGNPPRQAS 229
D G S
Sbjct: 186 KDMGGQMGGLS 196
Score = 55.8 bits (135), Expect = 2e-09
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVT------TNKPRDLRVKYWLSNDYGERFSISRQ-GD 96
F+K+ Y+ + E V ++ VT +V Y + FS+ + G
Sbjct: 105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGI 163
Query: 97 ISLMQ-CLDYETEDSYRFTVYATD-----TLMTTSATVNISV 132
I +D E + Y+ + A D ++ + TVNI++
Sbjct: 164 IKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITL 205
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 88.1 bits (219), Expect = 1e-20
Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 31/200 (15%)
Query: 56 ENLPVNYVLLTVTTNKPRDL-----RVKYWLS-NDYGERFSISRQ-GDISLMQCLDYETE 108
E + VL+ + D+ +KY LS G F I + G+I + LD E
Sbjct: 13 EYTGPDPVLVGRLHS---DIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69
Query: 109 DSYRFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSV 164
Y A D + + + V ++ND P F + Y +P G+
Sbjct: 70 AQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPE----RSNVGTS 125
Query: 165 IGKVEAADGDKGD-----RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQLV 215
+ +V A+D D ++ S+ + FS+ +G I L + +V
Sbjct: 126 VIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTA-LPNMDREAKEEYHVV 183
Query: 216 VVATDTGN--PPRQASVPAI 233
+ A D G +
Sbjct: 184 IQAKDMGGHMGGLSGTTKVT 203
Score = 65.0 bits (159), Expect = 2e-12
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVT------TNKPRDLRVKYWLSNDYGERFSISRQ-GD 96
+F Y + E V ++ VT ++ Y + FS+ Q G
Sbjct: 106 EFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGI 164
Query: 97 ISLMQ-CLDYETEDSYRFTVYATD-----TLMTTSATVNISVVNVNDWDPR 141
I +D E ++ Y + A D ++ + V I++ + D +
Sbjct: 165 IRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 89.7 bits (223), Expect = 2e-20
Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 37/215 (17%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL---------RVKYWLSNDYGERFSISRQ 94
+F Y + E + + VT D ++ Y + FSI +
Sbjct: 105 EFLNGPYHATVPEMSILGTSVTNVTA---TDADDPVYGNSAKLVYSILEG-QPYFSIEPE 160
Query: 95 -GDISLMQ-CLDYETEDSYRFTVYATDTL-----MTTSATVNISVVNVNDWDPRFRYPQY 147
I +D E ++ Y + A D ++ + T+ +++ +VND P+F Y
Sbjct: 161 TAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLY 220
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLS-LRGPYEKMFSI-----NDSGHI 199
+P D+ G+ IG+V+A D D G+ + + + G +F I G I
Sbjct: 221 HFSVP----EDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVI 276
Query: 200 SIVDLSALN---TSTIQLVVVATDTGNPPRQASVP 231
+ L+ + L V A + PR +S
Sbjct: 277 RLR--KPLDFETKKSYTLKVEAANIHIDPRFSSRG 309
Score = 78.9 bits (195), Expect = 1e-16
Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 23/187 (12%)
Query: 56 ENLPVNYVLLTVT-TNKPR-DLRVKYWLSND-YGERFSISRQ-GDISLMQCLDYETEDSY 111
E +L+ T+ ++KY LS D G F I+ GDI ++ LD E + Y
Sbjct: 12 EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEY 71
Query: 112 RFTVYATD----TLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGK 167
T A D + + I V ++ND P F Y +P G+ +
Sbjct: 72 TLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE----MSILGTSVTN 127
Query: 168 VEAADGDKGD-----RVTLSLRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQLVVVA 218
V A D D ++ S+ + FSI ++ I L + +V+ A
Sbjct: 128 VTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETAIIKTA-LPNMDREAKEEYLVVIQA 185
Query: 219 TDTGNPP 225
D G
Sbjct: 186 KDMGGHS 192
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 85.9 bits (213), Expect = 1e-19
Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 34/213 (15%)
Query: 50 YSVSALEN--LPVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
+ EN P + V + R K+ L+ D F I+ G +S+ +
Sbjct: 6 SPILIPENQRQPFPRDVGKVV-DSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR 64
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLAD 158
LD ET +Y+ V TD + + + V++ ND P FR Y +
Sbjct: 65 TLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME----G 120
Query: 159 LTPGSVIGKVEAADGDKGD----RVTLSL-----RGPYEKMFSIN-DSGHISIVDLSA-- 206
G+ + ++ A D D + ++ P MF I+ + G I V A
Sbjct: 121 SPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALL 180
Query: 207 ----LNTSTIQLVVVATDTG--NPPRQASVPAI 233
L +L++ A D + + A
Sbjct: 181 DRETLENPKYELIIEAQDMAGLDVGLTGTATAT 213
Score = 48.9 bits (117), Expect = 6e-07
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL--------RVKYWLSNDYGER-----FS 90
F + Y +E P ++ +T D ++Y + ++ F
Sbjct: 107 IFREGPYIGHVMEGSPTGTTVMRMTA---FDADDPATDNALLRYNIRQQTPDKPSPNMFY 163
Query: 91 ISRQ-GDISLMQ---CLDYETED--SYRFTVYATD-----TLMTTSATVNISV 132
I + GDI + LD ET + Y + A D +T +AT I +
Sbjct: 164 IDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVI 216
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 69.3 bits (170), Expect = 9e-15
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 47 KNEYSVSALENLPVNYVLLTVTTNKPRDL--RVKYWLS-----NDYGERFSISRQ-GDIS 98
++ E+L + + ++ + ++ Y + F ++ G+++
Sbjct: 14 TAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 99 LMQCLDYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
+ LD E + T YA D + + I V+++ND +P F
Sbjct: 74 VTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 158 DLTPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DSGHISIVDLSAL-- 207
DL+ + I K+ +D + ++T G P +F N D+G +++ S L
Sbjct: 24 DLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNV--TSILDR 80
Query: 208 -NTSTIQLVVVATDTGNPPRQASVP 231
T L A D + +
Sbjct: 81 EETPFFLLTGYALDARGNNVEKPLE 105
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 69.0 bits (170), Expect = 1e-14
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSN---DYGERFSI-SR 93
+F K+ Y EN +L + DL +++Y +
Sbjct: 13 RFEKSVYEADLAENSAPGTPILQLRA---ADLDVGVNGQIEYVFGAATESVRRLLRLDET 69
Query: 94 QGDISLMQCLDYETEDSYRFTVYATD---TLMTTSATVNISVVNVND 137
G +S++ +D E + RFTV A D T ATV +++ + ND
Sbjct: 70 SGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDEND 116
Score = 45.5 bits (109), Expect = 2e-06
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 130 ISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGPY 187
S + ND PRF YE L + PG+ I ++ AAD D G ++
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAE----NSAPGTPILQLRAADLDVGVNGQIEYVFGAAT 57
Query: 188 EK---MFSIN-DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQAS 229
E + ++ SG +S+ L ++ + ++ V+A D G PP+
Sbjct: 58 ESVRRLLRLDETSGWLSV--LHRIDREEVNQLRFTVMARDRGQPPKTDK 104
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 64.2 bits (157), Expect = 4e-13
Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 52 VSALENLPVNYV--LLTVTTNKPRDLRVKYWLSNDYGER-----FSISRQ-GDISLMQCL 103
++ EN + L+ + + + ++L ++Y ++ ++ F I+ G +S+ + L
Sbjct: 9 INLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVVNVNDWDPRF 142
D E + +A D + + I+V+++ND P F
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 39.6 bits (93), Expect = 2e-04
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 161 PGSVIGKVEAADGDKGD--RVTLSLRGPY-----EKMFSIN-DSGHISIVDLSAL---NT 209
G ++ + + S+ GP +F IN SG +S+ L
Sbjct: 16 RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV--TKPLDRELI 73
Query: 210 STIQLVVVATDTGNPPRQASVP 231
+ L A D + +
Sbjct: 74 ARFHLRAHAVDINGNQVENPID 95
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 63.6 bits (156), Expect = 6e-13
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDL------RVKYWLSNDYGER----FSI-S 92
F + + V EN PV ++ + D ++Y F++ +
Sbjct: 13 VFKEGQVEVHIPENAPVGTSVIQLHA---TDADIGSNAEIRYIFGAQVAPATKRLFALNN 69
Query: 93 RQGDISLMQCLDYETEDSYRFTVYATDT-LMTTSATVNISVVNVN 136
G I++ + LD E ++ TV A+D ATV I+V +VN
Sbjct: 70 TTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN 114
Score = 43.2 bits (103), Expect = 1e-05
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 130 ISVVNVNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGP- 186
S + ND P F+ Q E+ +P + G+ + ++ A D D G +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPE----NAPVGTSVIQLHATDADIGSNAEIRYIFGAQV 57
Query: 187 ---YEKMFSIN-DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQASV 230
+++F++N +G I++ +L+ T+ ++ V+A+D + P +A+V
Sbjct: 58 APATKRLFALNNTTGLITV--QRSLDREETAIHKVTVLASDGSSTPARATV 106
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 59.7 bits (145), Expect = 2e-11
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 44 QFSKNEYSVSALENLPVNYV--LLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-G 95
S +S EN + L+ + +NK ++ +V Y ++ F I R+ G
Sbjct: 3 LGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETG 62
Query: 96 DISLMQCLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
+ + + LD E +Y +A + + + I+V
Sbjct: 63 WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITV 102
Score = 37.4 bits (87), Expect = 0.001
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 140 PRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLSLRG-----PYEKMFSIN 194
P + + P + ++++ + DK +V S+ G P +F I
Sbjct: 2 PLGSWVIPPISCPEN--EKGPFPKNLVQIKS-NKDKEGKVFYSITGQGADTPPVGVFIIE 58
Query: 195 -DSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQASVP 231
++G + + L+ +T L A + + +
Sbjct: 59 RETGWLKV--TEPLDRERIATYTLFSHAVSSNGNAVEDPME 97
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 53.2 bits (128), Expect = 3e-09
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 51 SVSALENLPVNYVLLTVTTNKPRDL---RVKYWLSNDY-GERFSISRQ-GDISLMQCLDY 105
+ LE +L + D ++KY LS D G F I+ GDI ++ LD
Sbjct: 6 QMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 106 ETEDSYRFTVYATD----TLMTTSATVNISV 132
E + Y T A D + + I V
Sbjct: 66 EEKAEYTLTAQAVDFETNKPLEPPSEFIIKV 96
Score = 34.3 bits (79), Expect = 0.011
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 161 PGSVIGKVEAADGDKGD-RVTLSLRGPYE-KMFSIN-DSGHISIVDLSALN---TSTIQL 214
P ++ D D G ++ L G +F IN +G I + L+ + L
Sbjct: 16 PEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHA--IKRLDREEKAEYTL 73
Query: 215 VVVATDT-GNPPRQASVP 231
A D N P +
Sbjct: 74 TAQAVDFETNKPLEPPSE 91
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 52.0 bits (125), Expect = 6e-09
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 51 SVSALENLPVNYVLLTVTTNKPRDL---RVKYWLSNDY-GERFSISRQ-GDISLMQCLDY 105
LE L + D +KY LS + G F+I GDI +Q LD
Sbjct: 7 QFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDR 66
Query: 106 ETEDSYRFTVYATD----TLMTTSATVNISV 132
E Y A D M + I +
Sbjct: 67 EERSQYTLRAQALDRRTGRPMEPESEFIIKI 97
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 161 PGSVIGKVEAADGDKGD-RVTLSLRGPYEK-MFSIN-DSGHISIVDLSALN---TSTIQL 214
+ +D D+GD + L G +F+I+ +G I + L+ S L
Sbjct: 17 TDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHA--IQRLDREERSQYTL 74
Query: 215 VVVATDTGNPP 225
A D
Sbjct: 75 RAQALDRRTGR 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 8e-09
Identities = 82/483 (16%), Positives = 146/483 (30%), Gaps = 168/483 (34%)
Query: 4 EDDFLQPITLVVRAIQYDNQDRYAL-ATLIVSKAGTSLRELQFSKNEYSVSALENLPVNY 62
E+ +L+ D +AL A L+ T ++ + KN + + P
Sbjct: 92 ENCYLE------------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF-- 137
Query: 63 VLLTVTTNKPRD--LRVKYWLSNDYGERFSISRQGDISLM-----Q-----CLD-----Y 105
+K + L F +G+ L+ Q + Y
Sbjct: 138 -------DKKSNSAL-------------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 106 ETEDSYR-----FTVYATDTLMTTSATVNIS------VVNVNDW--DPRFRYPQYELFLP 152
+T Y ++ +TL T + +N+ +W +P + +L
Sbjct: 178 QT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD--YLL 232
Query: 153 HIPLA-------------------DLTPG-------SVIGKVEA-------ADGDKGDRV 179
IP++ TPG G + A+ D +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 180 TLSLRGPYEKMFSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEA 239
+S+R +F I + + ++L S ++ + + G P S+ + +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILED-SLENNEGVPSPMLSISNL---TQE 347
Query: 240 IVQQASSKLNSGTSSTVLIILGVV-----LIVLGFVIIL--LILYIHKNKHTKNNGPPGS 292
VQ +K NS + + + +V L+V G L L L + K K P G
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-----APSGL 402
Query: 293 S-----HSKNDSFLSNVILPEKHVNV--------VAIPKIQEN---------------PV 324
S+ SN LP V A I ++ PV
Sbjct: 403 DQSRIPFSERKLKFSNRFLP---VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 325 F---NGSQEELQTQRGGTNSS----IYTATV--KKTLSGKP----ELDP--EVGVTPLVT 369
+ +GS +L+ G + I V + T K + P G+ L
Sbjct: 460 YDTFDGS--DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 370 DMK 372
K
Sbjct: 518 RNK 520
Score = 43.5 bits (102), Expect = 1e-04
Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 72/227 (31%)
Query: 10 PITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQ---FSKNEY-----SVS-ALENLPV 60
+L ++ ++ + + ++S + + ++Q N + V +L N
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 61 NYVLLTVTTNKPRDL--------RVKYWLSND-----YGER---FSISRQGDIS------ 98
N V+ + P+ L + K D + ER FS +R ++
Sbjct: 376 NLVV----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-NRFLPVASPFHSH 430
Query: 99 LMQ------CLDYETED------SYRFTVYATDT---LMTTSATVNISVVNVN-----DW 138
L+ D + + VY T L S +++ +V+ W
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 139 D--PRFRYPQYELFLPHIPLADLTPGSV--IGKV--EAADGDKGDRV 179
+ +F+ HI L D PG +G + DG G RV
Sbjct: 491 ETTTQFKA-------THI-L-DFGPGGASGLGVLTHRNKDG-TGVRV 527
Score = 43.1 bits (101), Expect = 1e-04
Identities = 56/323 (17%), Positives = 98/323 (30%), Gaps = 116/323 (35%)
Query: 6 DFLQPITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENL------- 58
+L+ T + + + + +++ + E F + A+ L
Sbjct: 265 SYLKGATGHSQGL---------VTAVAIAETDS--WE-SFFVS--VRKAITVLFFIGVRC 310
Query: 59 ----PVNYVLLTVTTNKPRDLRVKYWLSNDYGER---FSISRQGDISLMQCLDYETEDSY 111
P + ++ ++ L N+ G SIS +++ Q DY
Sbjct: 311 YEAYPNTSLPPSI---------LEDSLENNEGVPSPMLSIS---NLTQEQVQDY------ 352
Query: 112 RFTVYATDTLMTTSATVNISVVNVNDWDPRFRYPQYELFLPHIPLADLT--PGSVIG--- 166
V T++ + V IS+VN + + ++ P S+ G
Sbjct: 353 ---VNKTNSHLPAGKQVEISLVN----GAK----------NLV----VSGPPQSLYGLNL 391
Query: 167 ---KVEAADGDKGDRVTLSLRGPYEKMFSI--------------NDSGHISIVDLS---- 205
K +A G R+ S R FS + + DL
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKL---KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 206 ALNTSTIQLVVVATDTGNPPRQAS-------VPAIMHFP---EAIVQQASSKL------- 248
+ N IQ+ V T G+ R S V I+ P E Q ++ +
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 249 NSGTSSTVLIIL---GVVLIVLG 268
SG GV +IV G
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAG 531
Score = 40.8 bits (95), Expect = 7e-04
Identities = 43/245 (17%), Positives = 76/245 (31%), Gaps = 64/245 (26%)
Query: 14 VVRAIQYDNQDRYALATLIVSKAGTSLRELQFSKNEYSVSALENLPVNYVLLTV--TTNK 71
+ + ++ D + T G S+ ++ + N PVN LT+ K
Sbjct: 1641 AAQDV-WNRADNHFKDTY-----GFSILDI-----------VINNPVN---LTIHFGGEK 1680
Query: 72 PRDLRVKYWLSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSAT---- 127
+ +R Y + + E + + + ++ + SY F L T T
Sbjct: 1681 GKRIRENY-SAMIF-ETIVDGKLKTEKIFKEINEHST-SYTFR-SEKGLLSATQFTQPAL 1736
Query: 128 VNISVVNVNDWDPRFRYPQYELFLPHIPL----ADLTPGSVIGKVEAADGDKGDRVTL-S 182
+ D + P F H L A + V+ +E+ V +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVM-SIESL-------VEVVF 1787
Query: 183 LRGPYEKMFSINDSGHISIVDLSALNTSTI---------QLVV--VATDTG------N-- 223
RG ++ D S + A+N + Q VV V TG N
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 224 -PPRQ 227
+Q
Sbjct: 1848 VENQQ 1852
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 48.9 bits (117), Expect = 8e-08
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 50 YSVSALENL--PVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
S+S EN P ++ V + R K L + F I+ G++S+ +
Sbjct: 5 PSISIPENQRIPFPKIVGRVVVSD-RIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTK 63
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
LD E SY+ V TD + + I V+
Sbjct: 64 ALDREAIPSYQLQVETTDENGKTIEGPVDLEILVI 98
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 162 GSVIGKVEAADGDKGDRVTLSLRG---PYEKMFSIN-DSGHISIVDLSALN---TSTIQL 214
++G+V +D G ++ L +G + +F IN +SG +S+ AL+ + QL
Sbjct: 18 PKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSV--TKALDREAIPSYQL 75
Query: 215 VVVATDTGNPPRQASVP 231
V TD + V
Sbjct: 76 QVETTDENGKTIEGPVD 92
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 48.2 bits (115), Expect = 2e-07
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 50 YSVSALENL--PVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQ 101
+ EN P + V ++ K+ LS D F I+ GD+S+ +
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEG-TEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63
Query: 102 CLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
LD E +Y V TD ++ ++ISV
Sbjct: 64 PLDREAIANYELEVEVTDLSGKIIDGPVRLDISV 97
Score = 37.8 bits (88), Expect = 5e-04
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 162 GSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSAL---NTSTIQL 214
+GKV ++G +G + LS + + +F IN SG +S+ L + +L
Sbjct: 18 PRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV--TRPLDREAIANYEL 75
Query: 215 VVVATDTGNPPRQASVP 231
V TD V
Sbjct: 76 EVEVTDLSGKIIDGPVR 92
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 46.6 bits (111), Expect = 6e-07
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 50 YSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS-----NDYGERFSISRQ-GDISLMQCL 103
+ + P + V + R K+ L+ D F I+ G +S+ + L
Sbjct: 8 ILIPENQRQPFPRDVGKVV-DSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL 66
Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVV 133
D ET +Y+ V TD + + + V+
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 158 DLTPGSVIGKVEAADGDKGDRVTLS---LRGPYEKMFSIN-DSGHISIVDLSAL---NTS 210
+GKV +D +G + L+ + + F IN ++G +S+ L +
Sbjct: 15 RQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSV--TRTLDRETIA 72
Query: 211 TIQLVVVATDTGNPPRQASVP 231
T QL V TD + VP
Sbjct: 73 TYQLYVETTDASGKTLEGPVP 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 46/323 (14%), Positives = 84/323 (26%), Gaps = 131/323 (40%)
Query: 5 DDFLQP-ITLVVRAIQYDNQDRYALATLIVSKAGTSLRELQ-FSKNEYSVS--------- 53
++ L+ ++ I+ + + + + + + + Q F+K Y+VS
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVSRLQPYLKLR 141
Query: 54 -ALENL-PVNYVLL--------TVTTNKP-RDLRVK-------YWLSNDYGERFS----- 90
AL L P VL+ T +V+ +WL+ S
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVL 199
Query: 91 -----ISRQGDISLMQCLDYETEDSYRF------------------------------TV 115
+ Q D + D+ + R
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 116 YATD----TLMTTSATVNISVVN-----------VNDWDPRFRYPQ-YELF--------- 150
A + L+TT V + ++ + L
Sbjct: 260 NAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 151 -LPH-----IPLADLTPGSVIGKV-----------EAADGDKGDRV-TLSLRG--PYE-- 188
LP P S+I + + + DK + SL P E
Sbjct: 317 DLPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 189 ---KMFSI-NDSGHISIVDLSAL 207
S+ S HI + LS +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLI 395
Score = 33.3 bits (75), Expect = 0.16
Identities = 67/419 (15%), Positives = 128/419 (30%), Gaps = 110/419 (26%)
Query: 4 EDDFLQPI-TLVVRAIQYDNQ--DRYALATLIVSKAGTSLRELQFSK----------NEY 50
+ L+ + L+ + D + L + LR L SK N
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 51 SVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSIS--------RQGDISLMQC 102
+ A ++ +L +TT R +V +LS S+ + L++
Sbjct: 255 NAKAWNAFNLSCKIL-LTT---RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 103 LDYETED-----------------------SYRFTVYATDTLMTTSATVNISVVNVNDWD 139
LD +D + + + + S+ + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 140 PRFRYPQYELFLP--HIPLADLTP--GSVIGKVEAADGDKGDRVTLSLRGPYEKMFSIND 195
R + + +F P HIP L+ VI +K + +L + P E SI
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 196 -------------SGHISIVD----LSALNTSTIQLVVV-----------ATDTGNPPRQ 227
+ H SIVD ++ + + + +P R
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 228 ASVPAI---MHFPEAIVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKH- 283
+ F E ++ S+ N+ S ++L L L Y +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQ-----------LKFY---KPYI 534
Query: 284 TKNNGPPGSSHSKND--SFLSNV---ILPEKHVNVVAIPKIQEN-PVFNGSQEELQTQR 336
N+ P N FL + ++ K+ +++ I + E+ +F + Q QR
Sbjct: 535 CDND--PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE--EAHKQVQR 589
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 30.8 bits (70), Expect = 0.23
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 38 TSLRELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDY----GERFSISR 93
S +L+ ++ ++ + + + K W N +R +IS
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQA---VFKCEVSDE-KVTGK-WYKNGVEVRPSKRITISH 58
Query: 94 QGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNV 135
G + D ED +T ++ SA +N + V
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKV 100
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 31.1 bits (71), Expect = 0.58
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 253 SSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNGP 289
+ + + + +I+ + K K + GP
Sbjct: 285 RTDFPYVSAAMPCFVIIIILCVPCC--KKKTSAAEGP 319
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 81 LSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVNV 135
+ + RF I D++ + +D + +D +T+ + + SATVNI + ++
Sbjct: 46 IHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 28.4 bits (64), Expect = 1.3
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 63 VLLTVT-TNKPRDLRVKYWLSNDY----GERFSISRQGDISLMQCLDYETEDSYRFTVYA 117
V N + +V W E++ I+ + ++++ D D +
Sbjct: 19 VKYVCKIENYDQSTQVT-WYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKV 77
Query: 118 TDTLMTTSATVNISV 132
+ S+ + V
Sbjct: 78 VNDYGEDSSYAELFV 92
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 29.5 bits (66), Expect = 2.3
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 191 FSINDSGHISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMHFPEAIVQQ 243
+ +N+ GHIS+ + + + L + + +PA+ FP+ + +
Sbjct: 49 YDVNELGHISVCPDPDVPEARVDLAQLVKTREA--QGQRLPALFCFPQILQHR 99
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 86 GERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVV 133
E + + S + L E +T+ + L + A VN++VV
Sbjct: 51 SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Length = 315
Score = 28.7 bits (64), Expect = 3.3
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 257 LIILGVVLIVLGFVIILLILYIHKNKHTKNNG--PPGSSHS 295
L G++LIV+ I++ + + K + + + P SHS
Sbjct: 45 LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHS 85
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 27.4 bits (61), Expect = 3.4
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 80 WLSNDY---GERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVV 133
W R + ++ DS + + M +AT+ I VV
Sbjct: 58 WTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 28.7 bits (64), Expect = 3.5
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 79 YWLSND----YGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVN 134
W N Y +R G+ +Q + D ++ + D TV++S
Sbjct: 141 NWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 200
Query: 135 VNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS 182
++ F+ + L + ++ G + L+
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE-----GKALNLT 243
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 27.0 bits (60), Expect = 4.0
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 42 ELQFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDY----GERFSISRQGDI 97
+ + + V+A+ V +LT +P V+ W + + ++ +
Sbjct: 13 WIVYPSGKVYVAAVRLERV---VLTCELCRP-WAEVR-WTKDGEEVVESPALLLQKEDTV 67
Query: 98 SLMQCLDYETEDSYRFTVYATDTLMTTSATVNI 130
+ + EDS + D + S TV +
Sbjct: 68 RRLVLPAVQLEDSGEYLCEIDDE--SASFTVTV 98
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 27.4 bits (60), Expect = 4.8
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 81 LSNDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVV 133
L + R + D S+ E ED +TV + + + + V+
Sbjct: 86 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 27.8 bits (62), Expect = 5.0
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 WLSNDY----GERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISV 132
+ + F IS++GD+ + + EDS ++V AT+++ ++T + V
Sbjct: 137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome,
unknown function; 1.69A {Clostridium thermocellum}
Length = 98
Score = 26.7 bits (59), Expect = 5.2
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 107 TEDSYRFTVYATDT--LMTTSATVNISVVN 134
E ++ +V A D +T +V I V
Sbjct: 59 VEGNHEISVIAYDDDDAASTPDSVKIFVKQ 88
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 27.9 bits (62), Expect = 5.2
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 79 YWLSND----YGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVVN 134
W N Y +R G+ +Q + D ++ + D TV++S
Sbjct: 36 NWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 95
Query: 135 VNDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS 182
++ F+ + L + ++ G + L+
Sbjct: 96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE-----GKALNLT 138
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3
Length = 252
Score = 27.6 bits (62), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 216 VVATDTG-NPPRQASVPAIM 234
VV D N PR AS+P IM
Sbjct: 177 VVTADLRLNEPRYASLPNIM 196
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C*
3clt_C* 3clu_C*
Length = 264
Score = 27.6 bits (62), Expect = 7.2
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 216 VVATDTG-NPPRQASVPAIM 234
V+ G N PR AS+ I
Sbjct: 179 VLTIQLGINKPRYASLRGIK 198
>1efv_B Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Length = 255
Score = 27.2 bits (61), Expect = 7.9
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 215 VVVATDTG-NPPRQASVPAIM 234
VV D N PR A++P IM
Sbjct: 179 AVVTADLRLNEPRYATLPNIM 199
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 251 GTSSTVLIILGVVLIVLGFVIILLILYIHKNKHTKNNG 288
+ V +I+ +VLI+L V+ ++ YI + + +
Sbjct: 278 ARQAPVGLIVFIVLIML-VVVGAVVYYIWRRRSAYQDI 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,629,135
Number of extensions: 328867
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 106
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)