RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4697
(383 letters)
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 53.1 bits (126), Expect = 2e-09
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQCL 103
F ++ YS +++ LL V + + + K + F + G + ++
Sbjct: 12 GFPEDVYSAVLPKDVHEGQPLLNVKFSNC-NRKRKVQYESSEPADFKVDEDGTVYAVRSF 70
Query: 104 DYETEDSYRFTVYATDTLMTTSA--TVNISVVNVNDWDPRFRYPQYELFL 151
E +F +YA D VN+S +P + E +
Sbjct: 71 PLTAEQ-AKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIV 119
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 49.2 bits (116), Expect = 3e-08
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRD----LRVKYWLSNDYGERFSISRQGDISL 99
F V E+L ++++ P + ++ G ++
Sbjct: 5 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTG 64
Query: 100 MQCLDYETE----DSYRFTVYATDT---LMTTSATVNISVVNV 135
LD E+E ++Y + TD + T + T+ + V++V
Sbjct: 65 NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 34.6 bits (78), Expect = 0.004
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 140 PRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD---GDKGDRVTLSLRGPYEKMFSINDS 196
P F + + DL+ G I + A D P + D+
Sbjct: 4 PFFVPAVSRVDVSE----DLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 59
Query: 197 GHISIV-----DLSALNTSTIQLVVVATDTGNPPRQASV 230
G ++ + + +T ++++ TD G +
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 98
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 45.4 bits (106), Expect = 8e-07
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRD-----LRVKYWLSNDYGERFSI-----SR 93
F Y+ EN + + + ++ + Y + + G F+I S
Sbjct: 7 IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 65
Query: 94 QGDISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISVVNV 135
QG ++ + LD+E Y + + L T++ATV ++V +V
Sbjct: 66 QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 33.4 bits (75), Expect = 0.012
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 18/108 (16%)
Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD----GDKGDRVTLSLRGPYEKMF 191
ND P F Y +P + G + ++ D G + +R F
Sbjct: 2 NDNAPIFDPKTYTALVP-----ENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFF 56
Query: 192 SINDSGHISIVDLSAL------NTSTIQLVVVATDT---GNPPRQASV 230
+I + L+ L + + P ++
Sbjct: 57 NITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTA 104
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 40.8 bits (94), Expect = 3e-05
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLR-----------VKYWLSNDYGERFSIS 92
+F+++ + S E + ++ V+ D +K F+I+
Sbjct: 7 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 66
Query: 93 RQGDISLM--QCLDYETEDSYRFTVYATDT---LMTTSATVNISVV 133
R+ + + LD E Y TV ATD ++ I +
Sbjct: 67 RETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 112
Score = 33.5 bits (75), Expect = 0.010
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAAD-----GDKGDRVTLSLRG----- 185
ND P+F + + + PG+ + V A D ++ S+
Sbjct: 2 NDNRPKFTQDVFRGSVRE----GVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEE 57
Query: 186 PYEKMFSINDSGH---ISIVDLSALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
P +F+IN + L L V ATD AI+
Sbjct: 58 PIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQ 110
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 37.4 bits (85), Expect = 5e-04
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR----------VTLSLRG 185
ND P F +E + PG+ + KV A D D V+
Sbjct: 1 NDNRPEFTQEVFEGSVAE----GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 56
Query: 186 PYEKMFSINDSGHISIVDLS---ALNTSTIQLVVVATDTGNPPRQASVPAIMH 235
P++ MF++N + V S + T LVV A D + A++
Sbjct: 57 PHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 109
Score = 35.5 bits (80), Expect = 0.002
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPR------DLRVKYWLSNDYGER-----FSIS 92
+F++ + S E ++ V+ + + Y + + E F+++
Sbjct: 6 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 65
Query: 93 RQGDISL--MQCLDYETEDSYRFTVYATDT---LMTTSATVNISV 132
R + LD E+ +Y V A D ++T+A I+V
Sbjct: 66 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 110
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 36.6 bits (84), Expect = 6e-04
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 145 PQYELFLPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRG-----PYEKMFSIN-DS 196
P +P I + G + +K +V S+ G P +F I ++
Sbjct: 1 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 60
Query: 197 GHISIVDLSAL-NTSTIQLVVVATDTGNPPRQASV 230
G + + + +T L A + + +
Sbjct: 61 GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPM 95
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 36.2 bits (82), Expect = 0.001
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 136 NDWDPRFRYPQYELFLPHIPLADLTPGSVIGKVEAADGDKGDR---------VTLSLRGP 186
ND P F + + +P PG+ + V A D D + V+ + P
Sbjct: 1 NDNRPEFLHQVWNGSVPE----GSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTP 56
Query: 187 YEKMFSINDSGHISIVDLSALN---TSTIQLVVVATDTGNPPRQA 228
MF+IN+ I + L+ L++ ATD P
Sbjct: 57 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG 101
Score = 36.2 bits (82), Expect = 0.001
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 18/107 (16%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTVTTNKPRDLRVKYWLS----------NDYGERFSISR 93
+F ++ S E ++TVT D + F+I+
Sbjct: 6 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 65
Query: 94 QGD--ISLMQCLDYETEDSYRFTVYATD------TLMTTSATVNISV 132
+ I++ LD E Y + ATD ++ +AT I+V
Sbjct: 66 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 35.5 bits (81), Expect = 0.002
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 151 LPHIPLADLTPGSVIGKVEAADGDKGD--RVTLSLRGP-----YEKMFSIN-DSGHISIV 202
+P I +++ G ++ +K +V S+ G + +F I ++G + +
Sbjct: 4 IPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVT 63
Query: 203 DLSALNT-STIQLVVVATDTGNPPRQASV 230
L A P + +
Sbjct: 64 RPLDREEYDKYVLSSHAVSENGSPVEEPM 92
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 34.3 bits (77), Expect = 0.006
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 44 QFSKNEYSVSALENLPVNYVLLTV-TTNKPRDLRVKYWLSNDYGERFSISRQGDISLMQC 102
S +++ P + +V +D + + +G L+
Sbjct: 6 VPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSP 65
Query: 103 LDYETEDSYRFTVYATDTLM-TTSATVNISVVNVND 137
+ Y V +D VN +V +
Sbjct: 66 TQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEG 101
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 32.9 bits (74), Expect = 0.013
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 148 ELFLPHIPLADLTPGSVIGKVEAADGDKGDRVTLS-------LRGPYEKMFSIN-DSGHI 199
+ +P I L + + G ++ + ++L P +F IN SG +
Sbjct: 3 DWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQL 62
Query: 200 SIVD-LSALNTSTIQLVVVATDTGNPPRQASV 230
S+ L + L A D + +
Sbjct: 63 SVTKPLDRELIARFHLRAHAVDINGNQVENPI 94
Score = 32.9 bits (74), Expect = 0.015
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 52 VSALENLPVNYVLLTVTT--NKPRDLRVKYWLS-----NDYGERFSI-SRQGDISLMQCL 103
++ EN + V + ++L ++Y ++ F I G +S+ + L
Sbjct: 9 INLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 104 DYETEDSYRFTVYATDT---LMTTSATVNISVV 133
D E + +A D + + I+V+
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVI 101
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 28.3 bits (63), Expect = 0.39
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 4 EDDFLQPITLVVRAIQYDNQDRYALA 29
+ D + ++ RA++ D + RY A
Sbjct: 9 DSDSTAAVAVLKRAVELDAESRYQQA 34
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 28.2 bits (63), Expect = 0.49
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 257 LIILGVVLIVLGFVIILLILYIHKNKHTKNNGPPGSSHSKN 297
L G++LIV+ I++ + + K + + + + S +
Sbjct: 19 LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHS 59
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 27.6 bits (60), Expect = 2.5
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 255 TVLIILGVVLIVLGFVIILLILYIHKNKHTKNN 287
+ L ++L + L + HK T N
Sbjct: 41 AAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLN 73
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 27.1 bits (59), Expect = 3.9
Identities = 2/45 (4%), Positives = 14/45 (31%)
Query: 240 IVQQASSKLNSGTSSTVLIILGVVLIVLGFVIILLILYIHKNKHT 284
+ + + + ++ + L ++ + +N +
Sbjct: 464 AREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHES 508
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 25.1 bits (54), Expect = 7.4
Identities = 5/51 (9%), Positives = 13/51 (25%)
Query: 83 NDYGERFSISRQGDISLMQCLDYETEDSYRFTVYATDTLMTTSATVNISVV 133
+ + D +T + + + T ++ VV
Sbjct: 47 KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,337,840
Number of extensions: 58569
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 25
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)