Query psy4698
Match_columns 258
No_of_seqs 158 out of 2019
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 23:33:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 8.9E-41 1.9E-45 277.6 19.3 211 44-254 58-269 (476)
2 KOG0331|consensus 100.0 5.9E-40 1.3E-44 287.3 24.4 205 48-252 92-303 (519)
3 KOG0328|consensus 100.0 8E-40 1.7E-44 262.0 16.5 218 41-258 21-238 (400)
4 COG0513 SrmB Superfamily II DN 100.0 1.3E-38 2.7E-43 287.4 24.3 209 47-255 29-240 (513)
5 PTZ00110 helicase; Provisional 100.0 4.1E-38 9E-43 286.3 24.6 216 39-254 122-343 (545)
6 KOG0338|consensus 100.0 4E-39 8.7E-44 275.7 16.6 210 46-255 180-393 (691)
7 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-37 3.7E-42 281.3 25.6 214 39-253 113-333 (518)
8 PRK04837 ATP-dependent RNA hel 100.0 3.3E-37 7.3E-42 273.9 25.3 208 47-254 8-224 (423)
9 PRK11776 ATP-dependent RNA hel 100.0 2.2E-37 4.7E-42 277.8 24.3 207 47-253 4-211 (460)
10 PRK11634 ATP-dependent RNA hel 100.0 2.1E-37 4.5E-42 284.6 24.6 209 47-255 6-215 (629)
11 PRK10590 ATP-dependent RNA hel 100.0 3.8E-37 8.3E-42 275.6 24.7 207 48-254 2-214 (456)
12 KOG0346|consensus 100.0 9E-38 1.9E-42 263.3 15.9 210 47-256 19-237 (569)
13 PTZ00424 helicase 45; Provisio 100.0 2.3E-36 5.1E-41 267.0 25.6 220 37-256 18-237 (401)
14 cd00268 DEADc DEAD-box helicas 100.0 3.9E-36 8.4E-41 241.8 24.0 201 49-249 1-203 (203)
15 PRK04537 ATP-dependent RNA hel 100.0 2.1E-36 4.5E-41 276.2 24.2 210 47-256 9-228 (572)
16 KOG0343|consensus 100.0 4.4E-37 9.5E-42 265.4 18.2 206 47-253 69-279 (758)
17 KOG0345|consensus 100.0 3E-36 6.4E-41 255.9 20.1 207 48-254 5-222 (567)
18 KOG0342|consensus 100.0 2.7E-36 5.8E-41 257.5 19.3 210 46-255 81-297 (543)
19 PRK01297 ATP-dependent RNA hel 100.0 7.4E-35 1.6E-39 262.3 28.9 210 46-255 86-305 (475)
20 KOG0327|consensus 100.0 9.8E-37 2.1E-41 253.6 15.3 232 27-258 6-238 (397)
21 PRK11192 ATP-dependent RNA hel 100.0 2.9E-35 6.3E-40 262.4 25.3 206 48-253 2-212 (434)
22 KOG0348|consensus 100.0 1.6E-36 3.4E-41 261.1 15.3 204 47-250 136-361 (708)
23 KOG0339|consensus 100.0 8.3E-36 1.8E-40 255.3 18.4 215 37-251 213-432 (731)
24 KOG0326|consensus 100.0 2.2E-35 4.8E-40 240.2 10.9 206 47-252 85-290 (459)
25 KOG0335|consensus 100.0 1.6E-34 3.5E-39 249.5 15.5 212 39-250 66-293 (482)
26 KOG0336|consensus 100.0 6.5E-34 1.4E-38 238.4 15.1 212 43-255 215-433 (629)
27 KOG0341|consensus 100.0 1.3E-34 2.7E-39 241.2 10.1 212 40-251 163-388 (610)
28 KOG0340|consensus 100.0 2.3E-33 5.1E-38 231.1 16.4 215 44-258 4-224 (442)
29 KOG0333|consensus 100.0 4.5E-33 9.8E-38 239.3 18.4 216 36-251 234-483 (673)
30 KOG0337|consensus 100.0 8E-33 1.7E-37 232.3 14.3 206 46-251 20-226 (529)
31 KOG0329|consensus 100.0 5.5E-32 1.2E-36 214.4 16.1 207 47-253 42-250 (387)
32 KOG0334|consensus 100.0 2.1E-32 4.6E-37 251.7 14.9 215 39-253 357-579 (997)
33 TIGR03817 DECH_helic helicase/ 100.0 3.1E-30 6.7E-35 241.4 23.2 191 54-249 21-222 (742)
34 PF00270 DEAD: DEAD/DEAH box h 100.0 3E-30 6.5E-35 201.4 19.1 166 71-237 1-169 (169)
35 KOG4284|consensus 100.0 9.3E-31 2E-35 229.8 14.6 208 47-255 25-234 (980)
36 KOG0347|consensus 100.0 7.7E-30 1.7E-34 220.6 15.5 187 47-233 181-389 (731)
37 KOG0332|consensus 100.0 4.4E-30 9.6E-35 213.0 12.8 217 39-258 82-302 (477)
38 PRK00254 ski2-like helicase; P 100.0 3E-29 6.6E-34 235.7 19.9 186 48-240 2-188 (720)
39 PRK02362 ski2-like helicase; P 100.0 2.2E-29 4.7E-34 237.2 18.9 185 48-240 2-190 (737)
40 KOG0350|consensus 100.0 4.8E-28 1E-32 207.4 18.6 205 48-252 128-392 (620)
41 COG1201 Lhr Lhr-like helicases 100.0 2.7E-28 5.9E-33 224.9 16.8 196 54-251 8-216 (814)
42 PRK01172 ski2-like helicase; P 100.0 2.4E-27 5.2E-32 221.8 18.7 185 48-241 2-189 (674)
43 PRK13767 ATP-dependent helicas 99.9 5.2E-27 1.1E-31 223.6 18.6 178 54-232 18-219 (876)
44 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.5E-26 9.7E-31 211.3 19.8 184 65-256 12-241 (844)
45 PLN03137 ATP-dependent DNA hel 99.9 7.8E-25 1.7E-29 206.5 22.5 185 48-242 436-638 (1195)
46 COG1205 Distinct helicase fami 99.9 5.8E-25 1.2E-29 207.2 19.9 191 55-248 56-259 (851)
47 PRK09401 reverse gyrase; Revie 99.9 3.1E-24 6.7E-29 208.0 21.7 184 60-252 71-298 (1176)
48 TIGR00614 recQ_fam ATP-depende 99.9 1.6E-24 3.6E-29 194.8 18.4 176 64-250 6-194 (470)
49 KOG0344|consensus 99.9 4.9E-25 1.1E-29 192.5 12.3 211 43-253 128-354 (593)
50 TIGR00580 mfd transcription-re 99.9 8.6E-24 1.9E-28 200.6 21.8 186 53-252 435-631 (926)
51 smart00487 DEXDc DEAD-like hel 99.9 3.2E-23 6.9E-28 164.7 21.3 187 65-252 4-192 (201)
52 COG1204 Superfamily II helicas 99.9 1.9E-24 4.1E-29 201.3 14.9 187 53-246 15-205 (766)
53 PRK10689 transcription-repair 99.9 2.9E-23 6.2E-28 200.9 22.2 185 55-253 586-781 (1147)
54 PRK11057 ATP-dependent DNA hel 99.9 7.5E-23 1.6E-27 188.9 20.7 183 55-248 10-204 (607)
55 TIGR01389 recQ ATP-dependent D 99.9 5.8E-23 1.3E-27 189.7 18.6 172 61-243 4-185 (591)
56 PRK14701 reverse gyrase; Provi 99.9 1.2E-22 2.6E-27 201.0 21.4 193 56-256 66-303 (1638)
57 TIGR01054 rgy reverse gyrase. 99.9 2E-22 4.3E-27 195.7 20.3 191 56-255 65-299 (1171)
58 COG1202 Superfamily II helicas 99.9 8.7E-23 1.9E-27 178.1 15.6 191 47-241 194-392 (830)
59 PRK10917 ATP-dependent DNA hel 99.9 4.2E-22 9E-27 185.9 21.3 169 56-238 248-427 (681)
60 PRK09751 putative ATP-dependen 99.9 1E-22 2.2E-27 198.8 17.0 159 89-248 1-187 (1490)
61 KOG0952|consensus 99.9 8.7E-23 1.9E-27 187.9 11.7 170 65-240 106-294 (1230)
62 TIGR00643 recG ATP-dependent D 99.9 1.3E-21 2.8E-26 181.4 19.3 163 58-233 225-399 (630)
63 PHA02653 RNA helicase NPH-II; 99.9 5E-22 1.1E-26 183.0 15.9 172 71-253 166-353 (675)
64 COG1111 MPH1 ERCC4-like helica 99.9 4E-21 8.7E-26 166.0 17.5 182 66-251 12-196 (542)
65 TIGR01970 DEAH_box_HrpB ATP-de 99.9 6.6E-21 1.4E-25 179.3 19.5 173 72-257 5-180 (819)
66 PHA02558 uvsW UvsW helicase; P 99.9 3.8E-21 8.3E-26 174.0 15.3 150 68-233 113-262 (501)
67 PRK11664 ATP-dependent RNA hel 99.9 1.8E-20 4E-25 176.5 18.6 173 71-256 7-182 (812)
68 COG4581 Superfamily II RNA hel 99.9 1.1E-20 2.4E-25 177.4 16.9 177 64-252 115-294 (1041)
69 PRK13766 Hef nuclease; Provisi 99.9 5.8E-20 1.3E-24 174.9 20.5 178 66-247 12-192 (773)
70 TIGR03158 cas3_cyano CRISPR-as 99.9 3.5E-20 7.5E-25 161.0 17.2 168 73-246 1-209 (357)
71 KOG0354|consensus 99.9 1.8E-20 3.9E-25 170.1 15.5 168 67-238 60-229 (746)
72 PRK12899 secA preprotein trans 99.8 3.1E-20 6.8E-25 172.5 15.8 148 50-202 65-228 (970)
73 cd00046 DEXDc DEAD-like helica 99.8 8.8E-19 1.9E-23 131.4 16.6 144 85-230 1-144 (144)
74 TIGR01587 cas3_core CRISPR-ass 99.8 9.6E-20 2.1E-24 158.8 12.2 154 86-244 1-179 (358)
75 KOG0947|consensus 99.8 2.1E-19 4.6E-24 164.4 13.2 161 65-241 294-454 (1248)
76 COG0514 RecQ Superfamily II DN 99.8 9.3E-19 2E-23 156.9 14.8 173 65-248 13-196 (590)
77 PRK05580 primosome assembly pr 99.8 5E-18 1.1E-22 158.3 19.6 156 69-237 144-311 (679)
78 KOG0349|consensus 99.8 6.1E-19 1.3E-23 149.8 10.2 140 118-257 289-438 (725)
79 KOG0948|consensus 99.8 5.9E-19 1.3E-23 158.1 9.8 173 69-256 129-304 (1041)
80 PF04851 ResIII: Type III rest 99.8 3.4E-18 7.3E-23 134.7 12.3 153 69-232 3-184 (184)
81 KOG0951|consensus 99.7 1.3E-17 2.8E-22 156.3 12.7 180 53-239 295-495 (1674)
82 PRK11131 ATP-dependent RNA hel 99.7 7.4E-17 1.6E-21 155.8 17.6 170 71-257 76-252 (1294)
83 KOG0352|consensus 99.7 1.4E-16 3E-21 135.4 13.9 182 57-249 6-207 (641)
84 TIGR00963 secA preprotein tran 99.7 8.6E-17 1.9E-21 147.8 13.6 131 65-203 53-190 (745)
85 PRK09694 helicase Cas3; Provis 99.7 2.2E-16 4.8E-21 149.2 14.6 170 67-238 284-488 (878)
86 TIGR00603 rad25 DNA repair hel 99.7 2.7E-16 5.8E-21 145.2 14.7 148 69-232 255-413 (732)
87 COG1061 SSL2 DNA or RNA helica 99.7 1.2E-16 2.5E-21 142.5 11.9 146 69-232 36-185 (442)
88 TIGR03714 secA2 accessory Sec 99.7 1.4E-16 3.1E-21 147.1 12.9 131 66-202 68-208 (762)
89 TIGR01967 DEAH_box_HrpA ATP-de 99.7 7.8E-16 1.7E-20 149.2 18.1 172 73-257 71-245 (1283)
90 PRK09200 preprotein translocas 99.7 3.1E-16 6.8E-21 146.0 14.0 131 65-202 75-212 (790)
91 PRK13104 secA preprotein trans 99.7 3E-16 6.6E-21 146.2 13.5 129 66-202 80-215 (896)
92 KOG0351|consensus 99.7 6E-16 1.3E-20 146.2 14.7 182 58-250 252-452 (941)
93 PRK12898 secA preprotein trans 99.7 4.8E-16 1E-20 142.0 13.5 129 66-202 101-255 (656)
94 KOG0353|consensus 99.7 1.7E-15 3.8E-20 127.1 14.0 181 50-240 74-270 (695)
95 TIGR00595 priA primosomal prot 99.7 1.2E-15 2.5E-20 137.9 13.0 135 88-236 1-145 (505)
96 KOG0920|consensus 99.6 6.1E-15 1.3E-19 137.7 16.5 198 49-256 153-352 (924)
97 PRK11448 hsdR type I restricti 99.6 3.1E-15 6.6E-20 145.1 15.0 160 69-233 413-597 (1123)
98 KOG0950|consensus 99.6 1.9E-15 4E-20 139.3 10.8 185 49-239 203-398 (1008)
99 COG1197 Mfd Transcription-repa 99.6 2E-14 4.4E-19 136.0 17.4 191 51-254 576-776 (1139)
100 COG1200 RecG RecG-like helicas 99.6 2E-14 4.4E-19 129.4 15.6 167 53-233 246-425 (677)
101 COG1643 HrpA HrpA-like helicas 99.6 4.7E-14 1E-18 132.0 15.1 178 69-258 50-230 (845)
102 PRK12904 preprotein translocas 99.6 3.9E-14 8.5E-19 132.0 12.5 130 65-202 78-214 (830)
103 COG1198 PriA Primosomal protei 99.5 1.5E-13 3.3E-18 126.9 15.1 152 69-233 198-362 (730)
104 TIGR00348 hsdR type I site-spe 99.5 1.3E-13 2.9E-18 128.7 14.4 152 69-231 238-403 (667)
105 TIGR01407 dinG_rel DnaQ family 99.5 3.4E-13 7.4E-18 129.4 16.1 81 55-139 232-317 (850)
106 KOG0922|consensus 99.5 4.9E-13 1.1E-17 119.7 14.6 177 69-258 51-230 (674)
107 PRK13107 preprotein translocas 99.5 1.5E-13 3.3E-18 128.1 10.9 130 66-203 80-216 (908)
108 COG1110 Reverse gyrase [DNA re 99.5 2.1E-12 4.6E-17 120.2 15.4 142 59-205 72-219 (1187)
109 COG4098 comFA Superfamily II D 99.5 2.7E-12 5.8E-17 106.8 14.3 153 69-240 97-253 (441)
110 KOG0949|consensus 99.4 7.4E-13 1.6E-17 122.4 11.2 159 69-232 511-673 (1330)
111 COG4096 HsdR Type I site-speci 99.4 7.3E-13 1.6E-17 121.2 10.2 165 68-248 164-339 (875)
112 COG1203 CRISPR-associated heli 99.4 1.3E-12 2.8E-17 123.3 12.1 182 69-250 195-400 (733)
113 PLN03142 Probable chromatin-re 99.4 9E-12 2E-16 119.6 17.7 163 69-239 169-339 (1033)
114 PF00176 SNF2_N: SNF2 family N 99.4 1.9E-12 4.2E-17 109.8 11.5 143 84-236 25-179 (299)
115 PRK07246 bifunctional ATP-depe 99.4 7.1E-12 1.5E-16 119.3 14.8 132 65-202 242-449 (820)
116 PF07652 Flavi_DEAD: Flaviviru 99.4 4.8E-12 1E-16 93.8 10.6 136 83-234 3-140 (148)
117 KOG0925|consensus 99.4 4.6E-12 1E-16 109.7 11.4 200 45-257 23-224 (699)
118 TIGR03117 cas_csf4 CRISPR-asso 99.4 8.6E-12 1.9E-16 114.4 13.9 62 77-139 9-70 (636)
119 KOG0923|consensus 99.3 4E-11 8.7E-16 107.3 13.0 182 65-257 261-444 (902)
120 PRK13103 secA preprotein trans 99.3 2E-11 4.4E-16 114.2 11.2 129 66-202 80-215 (913)
121 smart00489 DEXDc3 DEAD-like he 99.3 6E-11 1.3E-15 100.2 13.2 70 69-138 8-84 (289)
122 smart00488 DEXDc2 DEAD-like he 99.3 6E-11 1.3E-15 100.2 13.2 70 69-138 8-84 (289)
123 COG4889 Predicted helicase [Ge 99.2 2.4E-11 5.1E-16 111.7 8.0 177 47-230 140-350 (1518)
124 PRK04914 ATP-dependent helicas 99.2 2.3E-10 5E-15 109.5 14.1 163 69-236 152-322 (956)
125 PRK12326 preprotein translocas 99.2 1.4E-10 2.9E-15 106.5 11.2 130 65-202 75-211 (764)
126 PRK08074 bifunctional ATP-depe 99.2 4.3E-10 9.4E-15 108.9 15.2 65 66-133 255-323 (928)
127 KOG0385|consensus 99.2 6.8E-10 1.5E-14 101.0 14.7 162 69-238 167-336 (971)
128 KOG0926|consensus 99.2 2.6E-10 5.6E-15 104.1 11.7 173 74-257 261-452 (1172)
129 PRK12906 secA preprotein trans 99.1 3.1E-10 6.8E-15 105.8 11.3 130 65-202 77-213 (796)
130 KOG0924|consensus 99.1 3.3E-09 7.1E-14 95.6 15.5 179 66-257 353-534 (1042)
131 PF07517 SecA_DEAD: SecA DEAD- 99.1 2.1E-09 4.6E-14 89.0 12.9 130 65-202 74-210 (266)
132 TIGR02562 cas3_yersinia CRISPR 99.1 1.4E-09 2.9E-14 103.3 12.8 176 59-236 398-640 (1110)
133 KOG0387|consensus 99.1 2.5E-09 5.5E-14 97.7 13.5 164 69-241 205-387 (923)
134 KOG1123|consensus 99.1 1.4E-10 3E-15 101.0 4.6 148 69-232 302-460 (776)
135 KOG0390|consensus 99.1 6.4E-09 1.4E-13 96.5 15.4 173 69-248 238-434 (776)
136 KOG0951|consensus 99.0 4.1E-10 8.9E-15 106.9 7.6 152 69-233 1143-1302(1674)
137 PRK14873 primosome assembly pr 99.0 1.2E-09 2.6E-14 101.5 9.7 137 88-236 164-309 (665)
138 KOG0384|consensus 99.0 8.5E-10 1.9E-14 104.6 8.4 188 37-240 344-546 (1373)
139 PRK15483 type III restriction- 99.0 6.6E-09 1.4E-13 98.7 14.3 143 85-232 60-240 (986)
140 PRK11747 dinG ATP-dependent DN 99.0 5.6E-09 1.2E-13 98.3 13.0 64 66-132 23-95 (697)
141 CHL00122 secA preprotein trans 99.0 2.6E-09 5.6E-14 99.9 10.2 130 65-202 73-209 (870)
142 PRK12902 secA preprotein trans 99.0 4.5E-09 9.8E-14 98.4 11.1 129 66-202 83-218 (939)
143 TIGR00604 rad3 DNA repair heli 98.9 2.5E-08 5.5E-13 94.3 13.3 73 66-138 7-83 (705)
144 COG0610 Type I site-specific r 98.9 2.2E-08 4.7E-13 97.0 12.3 136 85-230 274-413 (962)
145 PF02562 PhoH: PhoH-like prote 98.9 2.6E-08 5.6E-13 79.4 10.6 149 68-229 3-155 (205)
146 KOG0921|consensus 98.8 2.5E-08 5.5E-13 92.3 11.0 235 5-255 319-557 (1282)
147 KOG0389|consensus 98.8 7.5E-08 1.6E-12 88.2 13.6 165 69-240 399-573 (941)
148 KOG4439|consensus 98.8 2.1E-08 4.6E-13 90.7 8.9 174 69-247 325-521 (901)
149 COG1199 DinG Rad3-related DNA 98.8 5.3E-08 1.2E-12 91.6 11.6 71 65-137 11-85 (654)
150 PF13872 AAA_34: P-loop contai 98.8 2.2E-07 4.8E-12 77.5 13.2 174 50-237 24-227 (303)
151 KOG0392|consensus 98.8 6.1E-08 1.3E-12 92.4 11.0 165 69-241 975-1150(1549)
152 PF13086 AAA_11: AAA domain; P 98.8 1.7E-07 3.6E-12 76.4 12.3 69 69-137 1-75 (236)
153 PRK12903 secA preprotein trans 98.7 1E-07 2.2E-12 89.2 11.4 129 66-202 76-211 (925)
154 PF13604 AAA_30: AAA domain; P 98.7 1.3E-07 2.9E-12 75.4 10.1 123 69-229 1-130 (196)
155 PF02399 Herpes_ori_bp: Origin 98.7 3.7E-07 7.9E-12 85.0 13.4 156 85-252 50-213 (824)
156 KOG1000|consensus 98.6 4.5E-07 9.8E-12 79.4 10.3 151 68-230 197-348 (689)
157 KOG0391|consensus 98.5 7.2E-07 1.6E-11 85.0 11.2 162 69-238 615-784 (1958)
158 PRK10536 hypothetical protein; 98.5 1.5E-06 3.2E-11 71.4 11.6 161 65-245 55-236 (262)
159 COG3587 Restriction endonuclea 98.5 4E-07 8.6E-12 84.4 9.0 146 85-235 75-247 (985)
160 KOG1002|consensus 98.5 9.8E-07 2.1E-11 77.4 10.9 151 69-230 184-354 (791)
161 PRK12900 secA preprotein trans 98.5 2.6E-07 5.7E-12 87.7 7.8 127 69-202 138-271 (1025)
162 PRK10875 recD exonuclease V su 98.5 1.3E-06 2.8E-11 80.8 12.0 140 71-229 154-301 (615)
163 PF09848 DUF2075: Uncharacteri 98.5 7.1E-07 1.5E-11 77.8 9.6 108 86-216 3-117 (352)
164 TIGR01447 recD exodeoxyribonuc 98.5 1.9E-06 4.2E-11 79.4 12.6 140 71-229 147-295 (586)
165 PRK12901 secA preprotein trans 98.5 3.1E-07 6.6E-12 87.4 7.4 128 69-202 169-303 (1112)
166 TIGR01448 recD_rel helicase, p 98.5 3.3E-06 7.1E-11 80.0 13.7 126 68-229 322-452 (720)
167 KOG0952|consensus 98.3 3.5E-07 7.6E-12 86.3 4.0 135 69-208 927-1064(1230)
168 KOG1802|consensus 98.3 2.7E-06 5.8E-11 77.1 9.2 77 61-139 402-478 (935)
169 PF12340 DUF3638: Protein of u 98.3 1.3E-05 2.8E-10 64.7 12.2 151 48-203 4-186 (229)
170 KOG4150|consensus 98.3 4E-06 8.6E-11 74.9 8.4 194 61-256 278-487 (1034)
171 COG1875 NYN ribonuclease and A 98.2 6.5E-06 1.4E-10 70.1 8.0 144 65-227 224-385 (436)
172 PF13245 AAA_19: Part of AAA d 98.2 6E-06 1.3E-10 55.3 6.2 52 84-135 10-62 (76)
173 PRK12723 flagellar biosynthesi 98.2 5.7E-05 1.2E-09 66.3 13.3 131 85-243 175-311 (388)
174 PRK13889 conjugal transfer rel 98.1 5.3E-05 1.2E-09 73.5 14.1 126 65-229 343-470 (988)
175 TIGR00376 DNA helicase, putati 98.1 4.7E-05 1E-09 71.2 12.4 67 68-137 156-223 (637)
176 KOG2340|consensus 98.1 1.6E-05 3.4E-10 70.5 8.3 176 68-244 215-493 (698)
177 TIGR02768 TraA_Ti Ti-type conj 98.1 0.00011 2.3E-09 70.2 14.4 121 69-227 352-474 (744)
178 KOG1803|consensus 98.1 2E-05 4.3E-10 71.0 8.6 64 69-135 185-249 (649)
179 COG0553 HepA Superfamily II DN 98.0 3.4E-05 7.3E-10 74.9 10.8 168 68-240 337-521 (866)
180 PF06862 DUF1253: Protein of u 98.0 6.1E-05 1.3E-09 66.7 11.3 139 111-250 33-246 (442)
181 PF00580 UvrD-helicase: UvrD/R 98.0 1.7E-05 3.6E-10 67.6 7.7 68 70-139 1-69 (315)
182 PRK08181 transposase; Validate 98.0 0.00016 3.6E-09 60.4 12.7 141 70-254 88-243 (269)
183 PRK06526 transposase; Provisio 98.0 4.2E-05 9.1E-10 63.5 8.7 132 79-254 93-235 (254)
184 KOG0386|consensus 97.9 7.7E-06 1.7E-10 77.1 3.9 153 69-230 394-554 (1157)
185 KOG1132|consensus 97.9 9.8E-05 2.1E-09 69.2 10.5 71 69-139 21-134 (945)
186 PRK13826 Dtr system oriT relax 97.9 0.00031 6.8E-09 68.8 14.4 138 53-229 366-505 (1102)
187 cd00009 AAA The AAA+ (ATPases 97.9 0.00018 3.9E-09 53.6 10.2 18 84-101 19-36 (151)
188 KOG0388|consensus 97.9 4.9E-05 1.1E-09 69.7 8.1 159 69-238 567-742 (1185)
189 KOG0989|consensus 97.9 2E-05 4.4E-10 65.6 5.1 48 184-232 124-171 (346)
190 PRK04296 thymidine kinase; Pro 97.8 4.5E-05 9.8E-10 60.5 6.2 113 84-229 2-114 (190)
191 PF13401 AAA_22: AAA domain; P 97.8 8.8E-05 1.9E-09 54.8 6.7 23 83-105 3-25 (131)
192 COG3421 Uncharacterized protei 97.8 3.9E-05 8.5E-10 69.1 5.5 152 89-243 2-177 (812)
193 KOG1015|consensus 97.7 0.00043 9.3E-09 65.6 11.5 142 85-230 697-859 (1567)
194 COG0653 SecA Preprotein transl 97.7 0.00011 2.4E-09 69.2 7.8 127 69-202 80-213 (822)
195 smart00382 AAA ATPases associa 97.7 8.5E-05 1.8E-09 54.8 5.7 41 84-127 2-42 (148)
196 PF05970 PIF1: PIF1-like helic 97.7 7.8E-05 1.7E-09 65.3 6.2 59 70-131 2-66 (364)
197 PRK14974 cell division protein 97.7 0.001 2.2E-08 57.4 12.9 130 86-242 142-276 (336)
198 COG1419 FlhF Flagellar GTP-bin 97.7 0.0018 3.9E-08 56.5 14.3 147 83-257 202-354 (407)
199 PRK11889 flhF flagellar biosyn 97.7 0.001 2.3E-08 58.1 12.7 129 85-243 242-376 (436)
200 COG0556 UvrB Helicase subunit 97.7 0.00015 3.3E-09 64.6 7.2 73 69-147 12-89 (663)
201 KOG1805|consensus 97.6 0.0004 8.6E-09 65.9 9.8 136 52-202 656-809 (1100)
202 PF14617 CMS1: U3-containing 9 97.6 0.00019 4.2E-09 59.0 6.9 85 114-199 125-211 (252)
203 PRK14722 flhF flagellar biosyn 97.5 0.00077 1.7E-08 58.8 9.8 132 83-243 136-271 (374)
204 PRK05703 flhF flagellar biosyn 97.5 0.0036 7.8E-08 55.9 14.1 130 84-243 221-356 (424)
205 PF00448 SRP54: SRP54-type pro 97.5 0.00072 1.6E-08 53.9 8.7 128 86-240 3-135 (196)
206 PF03354 Terminase_1: Phage Te 97.5 0.00049 1.1E-08 62.5 8.3 148 72-227 1-160 (477)
207 PRK13709 conjugal transfer nic 97.4 0.0018 3.8E-08 66.5 11.9 124 69-229 967-1099(1747)
208 TIGR00362 DnaA chromosomal rep 97.4 0.0029 6.3E-08 56.3 12.2 37 85-122 137-173 (405)
209 PRK10919 ATP-dependent DNA hel 97.4 0.00082 1.8E-08 63.6 9.1 69 69-139 2-71 (672)
210 PRK12727 flagellar biosynthesi 97.4 0.011 2.3E-07 53.9 15.5 132 82-243 348-483 (559)
211 PRK14712 conjugal transfer nic 97.4 0.0014 3E-08 66.6 10.8 63 69-132 835-901 (1623)
212 PRK00149 dnaA chromosomal repl 97.4 0.0038 8.3E-08 56.3 12.9 126 85-252 149-279 (450)
213 PF05127 Helicase_RecD: Helica 97.4 0.00015 3.3E-09 56.5 3.2 125 88-232 1-125 (177)
214 KOG1001|consensus 97.4 0.0012 2.6E-08 61.8 9.6 155 72-238 135-301 (674)
215 KOG1016|consensus 97.4 0.0042 9E-08 58.0 12.6 182 52-237 245-480 (1387)
216 cd01120 RecA-like_NTPases RecA 97.3 0.0033 7.2E-08 47.8 10.5 38 87-127 2-39 (165)
217 PF13173 AAA_14: AAA domain 97.3 0.0033 7.3E-08 46.4 9.8 38 189-229 61-98 (128)
218 PRK07764 DNA polymerase III su 97.3 0.0012 2.7E-08 63.3 9.2 52 188-241 119-170 (824)
219 PRK06893 DNA replication initi 97.3 0.001 2.2E-08 54.5 7.4 45 188-232 90-136 (229)
220 TIGR00596 rad1 DNA repair prot 97.3 0.00096 2.1E-08 63.8 8.0 87 164-250 6-98 (814)
221 PRK06835 DNA replication prote 97.3 0.0037 7.9E-08 53.9 10.8 131 83-255 182-319 (329)
222 PRK05642 DNA replication initi 97.3 0.0011 2.4E-08 54.3 7.3 44 189-232 97-141 (234)
223 TIGR01075 uvrD DNA helicase II 97.3 0.0016 3.5E-08 62.1 9.4 70 68-139 3-73 (715)
224 PRK14088 dnaA chromosomal repl 97.3 0.0051 1.1E-07 55.3 12.0 128 85-253 131-263 (440)
225 CHL00181 cbbX CbbX; Provisiona 97.2 0.0063 1.4E-07 51.5 11.8 22 83-104 58-79 (287)
226 PF00308 Bac_DnaA: Bacterial d 97.2 0.0024 5.2E-08 51.9 8.9 124 86-251 36-164 (219)
227 PRK14956 DNA polymerase III su 97.2 0.0023 4.9E-08 57.6 9.4 20 86-105 42-61 (484)
228 TIGR01074 rep ATP-dependent DN 97.2 0.0019 4.1E-08 61.2 9.5 68 70-139 2-70 (664)
229 PRK09183 transposase/IS protei 97.2 0.0059 1.3E-07 50.9 11.0 39 81-122 99-137 (259)
230 TIGR01547 phage_term_2 phage t 97.2 0.0018 3.9E-08 57.4 8.4 147 86-243 3-153 (396)
231 PHA02533 17 large terminase pr 97.2 0.0045 9.7E-08 56.9 11.0 122 69-202 59-182 (534)
232 PRK11054 helD DNA helicase IV; 97.2 0.0023 5E-08 60.5 9.3 70 68-139 195-265 (684)
233 TIGR02760 TraI_TIGR conjugativ 97.2 0.0057 1.2E-07 64.2 12.7 135 69-229 429-566 (1960)
234 PRK07952 DNA replication prote 97.1 0.021 4.5E-07 47.1 13.6 68 187-254 160-235 (244)
235 PRK11773 uvrD DNA-dependent he 97.1 0.0023 5.1E-08 61.1 9.2 69 69-139 9-78 (721)
236 KOG0298|consensus 97.1 0.0024 5.3E-08 62.3 9.1 143 83-230 373-550 (1394)
237 cd01124 KaiC KaiC is a circadi 97.1 0.0066 1.4E-07 47.6 10.3 49 87-139 2-50 (187)
238 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0064 1.4E-07 49.3 10.4 21 83-103 37-57 (226)
239 PRK08084 DNA replication initi 97.1 0.0034 7.4E-08 51.5 8.8 37 84-123 45-81 (235)
240 PRK08727 hypothetical protein; 97.1 0.003 6.5E-08 51.8 8.4 35 85-122 42-76 (233)
241 TIGR02881 spore_V_K stage V sp 97.1 0.013 2.9E-07 48.8 12.4 18 85-102 43-60 (261)
242 TIGR02785 addA_Gpos recombinat 97.1 0.0028 6.2E-08 63.9 9.6 122 70-200 2-126 (1232)
243 PRK11331 5-methylcytosine-spec 97.1 0.0042 9E-08 55.4 9.5 34 69-102 179-212 (459)
244 PRK00411 cdc6 cell division co 97.1 0.0061 1.3E-07 53.9 10.4 36 85-121 56-91 (394)
245 PLN03025 replication factor C 97.0 0.01 2.2E-07 51.0 11.4 38 189-227 99-136 (319)
246 PRK08903 DnaA regulatory inact 97.0 0.0065 1.4E-07 49.5 9.7 43 189-232 90-133 (227)
247 PRK14964 DNA polymerase III su 97.0 0.0066 1.4E-07 55.0 10.4 45 188-234 115-159 (491)
248 PRK06921 hypothetical protein; 97.0 0.015 3.2E-07 48.7 11.8 38 83-122 116-153 (266)
249 KOG0953|consensus 97.0 0.00093 2E-08 60.0 4.7 100 86-206 193-292 (700)
250 KOG1131|consensus 97.0 0.0071 1.5E-07 54.2 10.0 69 67-135 14-87 (755)
251 PRK07003 DNA polymerase III su 97.0 0.0051 1.1E-07 58.1 9.7 39 188-227 118-156 (830)
252 PRK14087 dnaA chromosomal repl 97.0 0.0034 7.3E-08 56.6 8.3 110 85-234 142-253 (450)
253 PF00004 AAA: ATPase family as 97.0 0.013 2.8E-07 42.9 10.1 15 87-101 1-15 (132)
254 PRK12402 replication factor C 97.0 0.0072 1.6E-07 52.1 10.0 39 188-227 124-162 (337)
255 COG1444 Predicted P-loop ATPas 97.0 0.011 2.4E-07 55.7 11.4 151 60-232 205-358 (758)
256 PRK08116 hypothetical protein; 96.9 0.016 3.4E-07 48.6 11.4 128 86-254 116-250 (268)
257 COG1474 CDC6 Cdc6-related prot 96.9 0.026 5.6E-07 49.4 13.1 27 85-112 43-69 (366)
258 PRK14721 flhF flagellar biosyn 96.9 0.0091 2E-07 53.1 10.3 133 83-243 190-325 (420)
259 PHA03368 DNA packaging termina 96.9 0.0089 1.9E-07 55.4 10.4 133 85-232 255-392 (738)
260 cd01122 GP4d_helicase GP4d_hel 96.9 0.0074 1.6E-07 50.5 9.3 41 81-123 27-67 (271)
261 PRK06731 flhF flagellar biosyn 96.9 0.029 6.3E-07 47.0 12.6 130 84-243 75-210 (270)
262 PRK14723 flhF flagellar biosyn 96.9 0.0063 1.4E-07 57.7 9.5 129 84-242 185-318 (767)
263 COG0470 HolB ATPase involved i 96.9 0.0058 1.3E-07 52.3 8.8 49 188-238 108-156 (325)
264 PRK14949 DNA polymerase III su 96.9 0.0063 1.4E-07 58.5 9.5 47 188-236 118-164 (944)
265 PF05729 NACHT: NACHT domain 96.9 0.028 6.1E-07 42.8 11.8 56 192-250 84-147 (166)
266 PF13177 DNA_pol3_delta2: DNA 96.9 0.0026 5.7E-08 49.1 5.9 50 188-239 101-150 (162)
267 PHA03333 putative ATPase subun 96.9 0.018 3.9E-07 53.7 11.9 136 83-231 186-333 (752)
268 PRK14086 dnaA chromosomal repl 96.9 0.015 3.3E-07 53.9 11.5 125 86-252 316-445 (617)
269 PRK06995 flhF flagellar biosyn 96.9 0.011 2.3E-07 53.5 10.4 88 84-175 256-345 (484)
270 TIGR02880 cbbX_cfxQ probable R 96.9 0.0095 2.1E-07 50.4 9.5 19 84-102 58-76 (284)
271 TIGR02760 TraI_TIGR conjugativ 96.9 0.01 2.3E-07 62.3 11.4 63 68-132 1018-1085(1960)
272 COG2256 MGS1 ATPase related to 96.8 0.0055 1.2E-07 53.3 7.9 17 85-101 49-65 (436)
273 COG2805 PilT Tfp pilus assembl 96.8 0.0026 5.5E-08 53.3 5.6 58 36-113 95-153 (353)
274 PTZ00112 origin recognition co 96.8 0.033 7.2E-07 53.6 13.4 22 87-109 784-805 (1164)
275 PRK14960 DNA polymerase III su 96.8 0.012 2.6E-07 54.9 10.3 42 188-231 117-158 (702)
276 TIGR01073 pcrA ATP-dependent D 96.8 0.0073 1.6E-07 57.8 9.3 70 68-139 3-73 (726)
277 PRK13894 conjugal transfer ATP 96.8 0.004 8.6E-08 53.5 6.6 66 59-127 124-190 (319)
278 PRK12377 putative replication 96.8 0.048 1E-06 45.1 12.7 127 85-254 102-236 (248)
279 PHA02544 44 clamp loader, smal 96.7 0.0057 1.2E-07 52.4 7.3 40 189-228 100-139 (316)
280 PRK08533 flagellar accessory p 96.7 0.024 5.3E-07 46.3 10.6 55 81-139 21-75 (230)
281 PRK14958 DNA polymerase III su 96.7 0.011 2.4E-07 54.1 9.3 39 188-227 118-156 (509)
282 PRK00440 rfc replication facto 96.7 0.028 6E-07 48.0 11.4 38 189-227 102-139 (319)
283 PRK12422 chromosomal replicati 96.7 0.021 4.5E-07 51.5 10.8 124 85-252 142-270 (445)
284 PRK00771 signal recognition pa 96.7 0.025 5.4E-07 50.7 11.1 52 191-242 177-229 (437)
285 COG1435 Tdk Thymidine kinase [ 96.7 0.024 5.2E-07 44.6 9.6 105 84-216 4-108 (201)
286 PRK14961 DNA polymerase III su 96.7 0.012 2.6E-07 51.6 8.9 39 188-227 118-156 (363)
287 PRK12323 DNA polymerase III su 96.7 0.012 2.7E-07 54.7 9.2 40 188-228 123-162 (700)
288 PRK13833 conjugal transfer pro 96.7 0.0063 1.4E-07 52.2 6.9 64 61-127 122-186 (323)
289 TIGR02928 orc1/cdc6 family rep 96.6 0.0065 1.4E-07 53.1 7.2 25 85-110 41-65 (365)
290 PRK14952 DNA polymerase III su 96.6 0.01 2.3E-07 55.0 8.5 47 188-236 117-163 (584)
291 PRK08691 DNA polymerase III su 96.6 0.018 3.9E-07 54.1 9.9 39 188-227 118-156 (709)
292 PRK14965 DNA polymerase III su 96.6 0.011 2.4E-07 55.0 8.6 47 188-236 118-164 (576)
293 KOG0991|consensus 96.6 0.0087 1.9E-07 48.5 6.8 43 188-231 112-154 (333)
294 PRK07994 DNA polymerase III su 96.6 0.02 4.2E-07 53.7 10.0 46 188-235 118-163 (647)
295 TIGR00064 ftsY signal recognit 96.6 0.042 9E-07 46.2 11.2 35 85-122 73-107 (272)
296 PRK12726 flagellar biosynthesi 96.6 0.034 7.4E-07 48.7 10.8 36 84-122 206-241 (407)
297 COG1484 DnaC DNA replication p 96.6 0.021 4.6E-07 47.4 9.3 48 83-134 104-151 (254)
298 PRK09112 DNA polymerase III su 96.5 0.037 8E-07 48.2 10.9 51 188-240 140-190 (351)
299 PRK05707 DNA polymerase III su 96.5 0.011 2.5E-07 50.9 7.7 36 70-105 4-43 (328)
300 PHA00729 NTP-binding motif con 96.5 0.016 3.5E-07 47.0 8.0 78 165-242 58-140 (226)
301 PRK14962 DNA polymerase III su 96.5 0.019 4E-07 52.1 9.3 19 86-104 38-56 (472)
302 TIGR02782 TrbB_P P-type conjug 96.5 0.011 2.4E-07 50.3 7.5 66 59-127 108-174 (299)
303 TIGR00678 holB DNA polymerase 96.5 0.031 6.8E-07 44.0 9.5 40 187-227 94-133 (188)
304 PRK14951 DNA polymerase III su 96.5 0.015 3.2E-07 54.3 8.6 44 188-233 123-166 (618)
305 PRK13341 recombination factor 96.5 0.02 4.4E-07 54.5 9.6 41 189-234 109-149 (725)
306 PRK06645 DNA polymerase III su 96.4 0.068 1.5E-06 48.9 12.5 20 86-105 45-64 (507)
307 COG4962 CpaF Flp pilus assembl 96.4 0.013 2.7E-07 50.2 7.2 69 59-133 149-218 (355)
308 PRK11823 DNA repair protein Ra 96.4 0.028 6.1E-07 50.6 9.8 89 83-203 79-170 (446)
309 PRK14959 DNA polymerase III su 96.4 0.021 4.6E-07 53.1 9.0 20 86-105 40-59 (624)
310 PRK08451 DNA polymerase III su 96.4 0.018 3.9E-07 52.7 8.6 40 187-227 115-154 (535)
311 PRK08769 DNA polymerase III su 96.4 0.027 5.9E-07 48.3 9.1 38 68-105 3-47 (319)
312 TIGR01425 SRP54_euk signal rec 96.4 0.045 9.8E-07 48.8 10.7 56 86-147 102-159 (429)
313 PRK14957 DNA polymerase III su 96.4 0.055 1.2E-06 49.8 11.6 39 188-227 118-156 (546)
314 PTZ00293 thymidine kinase; Pro 96.4 0.034 7.5E-07 44.6 9.1 39 84-125 4-42 (211)
315 PF06745 KaiC: KaiC; InterPro 96.4 0.021 4.6E-07 46.4 8.2 54 83-139 18-71 (226)
316 COG3973 Superfamily I DNA and 96.4 0.013 2.9E-07 53.5 7.3 86 56-141 192-286 (747)
317 PRK13342 recombination factor 96.4 0.039 8.5E-07 49.2 10.4 18 85-102 37-54 (413)
318 PRK05986 cob(I)alamin adenolsy 96.3 0.044 9.5E-07 43.3 9.4 140 83-240 21-168 (191)
319 cd00984 DnaB_C DnaB helicase C 96.3 0.039 8.4E-07 45.3 9.6 40 82-123 11-50 (242)
320 PRK09111 DNA polymerase III su 96.3 0.037 8E-07 51.6 10.3 40 187-227 130-169 (598)
321 PF05876 Terminase_GpA: Phage 96.3 0.0073 1.6E-07 55.9 5.6 126 69-203 16-148 (557)
322 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.027 5.8E-07 46.3 8.5 53 83-139 20-72 (237)
323 PF03969 AFG1_ATPase: AFG1-lik 96.3 0.059 1.3E-06 47.1 10.9 45 189-234 127-172 (362)
324 PF03237 Terminase_6: Terminas 96.3 0.16 3.5E-06 43.9 13.9 145 88-245 1-154 (384)
325 COG4626 Phage terminase-like p 96.3 0.03 6.6E-07 50.8 9.2 148 69-228 61-223 (546)
326 PF05621 TniB: Bacterial TniB 96.3 0.0076 1.6E-07 50.8 5.1 38 189-226 145-186 (302)
327 COG0593 DnaA ATPase involved i 96.3 0.057 1.2E-06 47.7 10.6 64 189-252 175-243 (408)
328 PF03796 DnaB_C: DnaB-like hel 96.3 0.028 6E-07 46.8 8.5 141 83-229 18-179 (259)
329 PRK14969 DNA polymerase III su 96.2 0.029 6.4E-07 51.6 9.1 39 188-227 118-156 (527)
330 COG2804 PulE Type II secretory 96.2 0.0083 1.8E-07 53.8 5.3 42 70-112 242-285 (500)
331 PRK07471 DNA polymerase III su 96.2 0.022 4.8E-07 49.9 7.9 41 188-229 140-180 (365)
332 PRK05563 DNA polymerase III su 96.2 0.042 9.2E-07 51.0 10.0 20 86-105 40-59 (559)
333 PRK14963 DNA polymerase III su 96.2 0.018 3.9E-07 52.6 7.5 17 87-103 39-55 (504)
334 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.05 1.1E-06 41.7 8.7 53 187-239 93-147 (159)
335 TIGR03499 FlhF flagellar biosy 96.2 0.015 3.3E-07 49.1 6.5 22 84-105 194-215 (282)
336 PHA03372 DNA packaging termina 96.2 0.14 3E-06 47.3 12.7 128 85-230 203-337 (668)
337 COG0466 Lon ATP-dependent Lon 96.1 0.064 1.4E-06 50.1 10.5 110 69-218 327-446 (782)
338 TIGR00631 uvrb excinuclease AB 96.1 0.03 6.5E-07 52.8 8.7 67 69-141 9-80 (655)
339 cd01121 Sms Sms (bacterial rad 96.1 0.063 1.4E-06 47.2 10.1 89 83-203 81-172 (372)
340 TIGR03600 phage_DnaB phage rep 96.1 0.034 7.3E-07 49.8 8.6 143 81-229 191-353 (421)
341 KOG0741|consensus 96.1 0.051 1.1E-06 49.2 9.4 53 47-101 216-273 (744)
342 PRK06904 replicative DNA helic 96.1 0.084 1.8E-06 48.0 11.1 149 81-234 218-387 (472)
343 PRK05896 DNA polymerase III su 96.1 0.037 8E-07 51.3 8.7 46 188-235 118-163 (605)
344 KOG2028|consensus 96.0 0.024 5.2E-07 49.0 6.8 55 190-249 223-278 (554)
345 PRK08840 replicative DNA helic 96.0 0.098 2.1E-06 47.4 11.2 147 81-233 214-381 (464)
346 TIGR00708 cobA cob(I)alamin ad 96.0 0.088 1.9E-06 40.9 9.5 52 188-239 96-149 (173)
347 KOG2004|consensus 96.0 0.02 4.4E-07 53.3 6.8 111 69-218 415-534 (906)
348 COG1132 MdlB ABC-type multidru 96.0 0.015 3.2E-07 54.2 6.1 38 188-225 482-519 (567)
349 PRK14955 DNA polymerase III su 96.0 0.066 1.4E-06 47.5 10.0 40 187-227 125-164 (397)
350 cd03115 SRP The signal recogni 96.0 0.14 3E-06 39.7 10.7 33 87-122 3-35 (173)
351 PRK12724 flagellar biosynthesi 96.0 0.2 4.4E-06 44.5 12.6 127 85-242 224-357 (432)
352 PRK07004 replicative DNA helic 95.9 0.04 8.8E-07 49.8 8.5 141 82-228 211-372 (460)
353 COG5008 PilU Tfp pilus assembl 95.9 0.01 2.2E-07 49.0 4.1 47 36-101 97-144 (375)
354 PRK10867 signal recognition pa 95.9 0.07 1.5E-06 47.7 9.8 41 86-128 102-144 (433)
355 PRK05298 excinuclease ABC subu 95.9 0.016 3.5E-07 54.7 6.1 67 69-141 12-83 (652)
356 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.12 2.7E-06 42.0 10.5 53 83-139 19-71 (229)
357 KOG1513|consensus 95.9 0.013 2.9E-07 55.0 5.2 156 69-230 264-454 (1300)
358 PRK07940 DNA polymerase III su 95.9 0.037 8E-07 49.0 7.8 52 188-241 116-167 (394)
359 PRK06067 flagellar accessory p 95.9 0.13 2.9E-06 42.0 10.6 53 83-139 24-76 (234)
360 TIGR02397 dnaX_nterm DNA polym 95.9 0.11 2.4E-06 45.1 10.7 17 86-102 38-54 (355)
361 PRK04195 replication factor C 95.9 0.029 6.3E-07 51.1 7.3 18 84-101 39-56 (482)
362 PF02572 CobA_CobO_BtuR: ATP:c 95.8 0.16 3.5E-06 39.5 10.2 140 87-239 6-148 (172)
363 TIGR02868 CydC thiol reductant 95.8 0.014 3.1E-07 53.7 5.2 40 188-227 487-526 (529)
364 PRK08006 replicative DNA helic 95.8 0.13 2.7E-06 46.8 11.0 147 81-233 221-388 (471)
365 TIGR02525 plasmid_TraJ plasmid 95.8 0.022 4.8E-07 49.9 6.0 37 84-121 149-185 (372)
366 TIGR03015 pepcterm_ATPase puta 95.7 0.061 1.3E-06 44.8 8.3 34 69-102 23-61 (269)
367 COG2909 MalT ATP-dependent tra 95.7 0.025 5.4E-07 53.7 6.3 41 192-232 132-172 (894)
368 PRK14954 DNA polymerase III su 95.7 0.097 2.1E-06 49.0 10.1 40 187-227 125-164 (620)
369 PRK14950 DNA polymerase III su 95.7 0.11 2.4E-06 48.5 10.6 20 86-105 40-59 (585)
370 KOG0738|consensus 95.7 0.037 8.1E-07 48.1 6.7 64 190-253 305-384 (491)
371 PF05496 RuvB_N: Holliday junc 95.7 0.013 2.7E-07 47.5 3.6 17 85-101 51-67 (233)
372 PRK08699 DNA polymerase III su 95.6 0.14 2.9E-06 44.3 10.1 50 188-239 112-161 (325)
373 PRK07993 DNA polymerase III su 95.6 0.085 1.9E-06 45.7 8.8 55 187-243 106-160 (334)
374 PRK07414 cob(I)yrinic acid a,c 95.6 0.17 3.6E-06 39.5 9.3 52 188-239 114-167 (178)
375 PRK06964 DNA polymerase III su 95.6 0.082 1.8E-06 45.8 8.5 52 187-240 130-181 (342)
376 PRK06647 DNA polymerase III su 95.5 0.095 2E-06 48.6 9.3 19 86-104 40-58 (563)
377 TIGR02639 ClpA ATP-dependent C 95.5 0.17 3.7E-06 48.6 11.4 18 85-102 204-221 (731)
378 PRK06620 hypothetical protein; 95.5 0.058 1.3E-06 43.6 7.0 58 190-251 86-145 (214)
379 PRK06871 DNA polymerase III su 95.5 0.053 1.1E-06 46.7 7.1 38 188-226 106-143 (325)
380 PRK09165 replicative DNA helic 95.5 0.1 2.2E-06 47.8 9.3 148 83-235 216-397 (497)
381 PRK11034 clpA ATP-dependent Cl 95.5 0.14 3E-06 49.3 10.4 45 191-235 280-328 (758)
382 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.027 5.8E-07 49.2 5.3 27 83-110 133-159 (358)
383 COG0552 FtsY Signal recognitio 95.4 0.29 6.2E-06 41.9 11.1 129 86-241 141-280 (340)
384 PRK08939 primosomal protein Dn 95.4 0.21 4.4E-06 42.8 10.4 35 84-121 156-190 (306)
385 PRK09087 hypothetical protein; 95.4 0.093 2E-06 42.8 8.0 59 192-252 90-152 (226)
386 TIGR00959 ffh signal recogniti 95.4 0.18 4E-06 45.1 10.3 35 86-122 101-135 (428)
387 PF05707 Zot: Zonular occluden 95.4 0.054 1.2E-06 43.0 6.3 54 189-243 79-138 (193)
388 PRK04841 transcriptional regul 95.4 0.21 4.5E-06 49.1 11.6 41 192-232 124-164 (903)
389 PRK05748 replicative DNA helic 95.4 0.13 2.9E-06 46.4 9.5 141 82-229 201-364 (448)
390 PRK14948 DNA polymerase III su 95.3 0.079 1.7E-06 49.7 8.2 21 85-105 39-59 (620)
391 KOG2228|consensus 95.3 0.57 1.2E-05 40.3 12.3 44 174-217 122-165 (408)
392 PF01695 IstB_IS21: IstB-like 95.3 0.039 8.4E-07 43.3 5.2 49 79-131 42-90 (178)
393 PRK08506 replicative DNA helic 95.3 0.11 2.4E-06 47.2 8.8 139 83-228 191-350 (472)
394 PF13481 AAA_25: AAA domain; P 95.3 0.24 5.3E-06 38.9 9.8 57 83-140 31-94 (193)
395 TIGR00665 DnaB replicative DNA 95.2 0.25 5.4E-06 44.4 10.9 140 83-228 194-353 (434)
396 PRK04328 hypothetical protein; 95.2 0.2 4.3E-06 41.5 9.4 53 83-139 22-74 (249)
397 PRK05636 replicative DNA helic 95.2 0.078 1.7E-06 48.5 7.6 143 84-233 265-427 (505)
398 cd01130 VirB11-like_ATPase Typ 95.2 0.026 5.6E-07 44.5 4.0 40 69-109 9-49 (186)
399 PRK08760 replicative DNA helic 95.2 0.14 3.1E-06 46.5 9.2 140 83-228 228-387 (476)
400 COG2109 BtuR ATP:corrinoid ade 95.2 0.32 7E-06 38.1 9.7 53 188-240 121-175 (198)
401 KOG0739|consensus 95.2 0.37 7.9E-06 40.8 10.6 155 45-251 128-299 (439)
402 PRK13851 type IV secretion sys 95.1 0.027 5.8E-07 48.9 4.2 44 80-127 158-201 (344)
403 PRK13900 type IV secretion sys 95.1 0.072 1.6E-06 46.1 6.7 42 81-126 157-198 (332)
404 PRK10416 signal recognition pa 95.1 0.92 2E-05 39.0 13.3 36 84-122 114-149 (318)
405 TIGR03345 VI_ClpV1 type VI sec 95.1 0.078 1.7E-06 51.7 7.5 18 85-102 209-226 (852)
406 PRK05595 replicative DNA helic 95.0 0.25 5.5E-06 44.6 10.2 145 83-234 200-364 (444)
407 PHA00012 I assembly protein 95.0 0.55 1.2E-05 40.3 11.4 62 187-249 79-146 (361)
408 KOG0058|consensus 95.0 0.067 1.4E-06 50.0 6.5 141 80-229 490-661 (716)
409 PRK06305 DNA polymerase III su 95.0 0.29 6.4E-06 44.2 10.6 39 188-227 120-158 (451)
410 PRK06090 DNA polymerase III su 95.0 0.18 4E-06 43.3 8.8 53 187-241 106-158 (319)
411 TIGR03689 pup_AAA proteasome A 95.0 0.053 1.2E-06 49.5 5.7 18 84-101 216-233 (512)
412 PHA00350 putative assembly pro 94.9 0.11 2.4E-06 45.9 7.3 24 87-110 4-28 (399)
413 PRK07399 DNA polymerase III su 94.9 0.23 4.9E-06 42.7 9.1 67 170-240 106-172 (314)
414 COG3972 Superfamily I DNA and 94.9 0.18 3.8E-06 45.4 8.4 80 57-139 151-230 (660)
415 PF00437 T2SE: Type II/IV secr 94.9 0.035 7.5E-07 46.5 4.0 43 81-126 124-166 (270)
416 TIGR01243 CDC48 AAA family ATP 94.9 0.1 2.2E-06 50.2 7.6 52 47-101 450-504 (733)
417 KOG0742|consensus 94.9 0.065 1.4E-06 47.1 5.6 17 85-101 385-401 (630)
418 TIGR01243 CDC48 AAA family ATP 94.8 0.19 4.2E-06 48.3 9.4 20 82-101 210-229 (733)
419 PF01443 Viral_helicase1: Vira 94.8 0.037 8E-07 45.0 4.0 15 87-101 1-15 (234)
420 TIGR00767 rho transcription te 94.8 0.26 5.7E-06 43.5 9.2 31 81-112 165-195 (415)
421 TIGR03346 chaperone_ClpB ATP-d 94.7 0.23 5E-06 48.6 9.8 47 190-236 267-316 (852)
422 PRK10436 hypothetical protein; 94.7 0.048 1E-06 49.3 4.8 40 71-111 203-244 (462)
423 KOG0732|consensus 94.7 0.074 1.6E-06 52.0 6.3 142 45-231 260-415 (1080)
424 PRK08058 DNA polymerase III su 94.7 0.16 3.4E-06 44.0 7.8 52 187-240 108-159 (329)
425 PRK10865 protein disaggregatio 94.7 0.2 4.3E-06 49.0 9.2 46 191-236 273-321 (857)
426 PTZ00454 26S protease regulato 94.7 0.2 4.3E-06 44.5 8.5 19 83-101 178-196 (398)
427 cd01126 TraG_VirD4 The TraG/Tr 94.7 0.031 6.8E-07 49.3 3.5 49 86-139 1-49 (384)
428 TIGR00416 sms DNA repair prote 94.7 0.23 4.9E-06 44.9 9.0 92 83-203 93-184 (454)
429 PRK14971 DNA polymerase III su 94.7 0.34 7.3E-06 45.6 10.4 45 187-233 119-163 (614)
430 PRK06321 replicative DNA helic 94.6 0.47 1E-05 43.1 10.9 139 84-229 226-388 (472)
431 KOG1133|consensus 94.6 0.05 1.1E-06 50.5 4.6 42 69-110 15-60 (821)
432 PRK14953 DNA polymerase III su 94.6 0.4 8.6E-06 43.8 10.5 37 188-225 118-154 (486)
433 PF01637 Arch_ATPase: Archaeal 94.6 0.038 8.3E-07 44.5 3.5 25 84-109 20-44 (234)
434 PRK05973 replicative DNA helic 94.6 0.15 3.3E-06 41.8 7.0 56 80-139 60-115 (237)
435 PRK07133 DNA polymerase III su 94.5 0.39 8.4E-06 45.7 10.3 46 188-235 117-162 (725)
436 TIGR00763 lon ATP-dependent pr 94.4 0.21 4.6E-06 48.3 8.7 19 83-101 346-364 (775)
437 KOG0734|consensus 94.4 0.25 5.5E-06 44.9 8.3 65 191-255 398-473 (752)
438 TIGR02237 recomb_radB DNA repa 94.4 0.36 7.8E-06 38.6 8.8 39 83-124 11-49 (209)
439 TIGR02012 tigrfam_recA protein 94.3 0.11 2.3E-06 44.7 5.8 44 83-129 54-97 (321)
440 PRK09354 recA recombinase A; P 94.3 0.12 2.7E-06 44.8 6.1 43 84-129 60-102 (349)
441 PF02534 T4SS-DNA_transf: Type 94.3 0.052 1.1E-06 49.2 4.1 50 85-139 45-94 (469)
442 KOG0737|consensus 94.3 0.3 6.5E-06 42.3 8.3 56 46-101 88-144 (386)
443 cd01128 rho_factor Transcripti 94.3 0.19 4.1E-06 41.6 7.0 30 81-111 13-42 (249)
444 cd01129 PulE-GspE PulE/GspE Th 94.3 0.1 2.2E-06 43.6 5.5 39 71-110 65-105 (264)
445 PRK09376 rho transcription ter 94.3 0.35 7.6E-06 42.7 8.8 29 83-112 168-196 (416)
446 TIGR02655 circ_KaiC circadian 94.3 0.43 9.3E-06 43.6 9.9 52 84-139 263-314 (484)
447 TIGR02538 type_IV_pilB type IV 94.2 0.069 1.5E-06 49.7 4.7 39 71-110 301-341 (564)
448 COG1221 PspF Transcriptional r 94.2 0.25 5.4E-06 43.6 7.9 21 81-101 98-118 (403)
449 PF06733 DEAD_2: DEAD_2; Inte 94.2 0.028 6.1E-07 43.8 1.9 42 161-203 115-159 (174)
450 COG1219 ClpX ATP-dependent pro 94.2 0.032 6.9E-07 47.3 2.2 19 84-102 97-115 (408)
451 COG2812 DnaX DNA polymerase II 94.2 0.058 1.3E-06 49.1 4.1 15 87-101 41-55 (515)
452 cd00544 CobU Adenosylcobinamid 94.2 0.66 1.4E-05 36.0 9.5 45 87-137 2-46 (169)
453 PF12846 AAA_10: AAA-like doma 94.2 0.06 1.3E-06 45.3 4.0 25 85-109 2-26 (304)
454 TIGR02533 type_II_gspE general 94.1 0.078 1.7E-06 48.3 4.8 39 71-110 227-267 (486)
455 TIGR00635 ruvB Holliday juncti 94.1 0.092 2E-06 44.7 5.1 17 85-101 31-47 (305)
456 cd01125 repA Hexameric Replica 94.1 0.59 1.3E-05 38.3 9.6 37 86-122 3-48 (239)
457 PRK13897 type IV secretion sys 93.9 0.076 1.6E-06 49.6 4.3 50 85-139 159-208 (606)
458 PF10412 TrwB_AAD_bind: Type I 93.9 0.088 1.9E-06 46.6 4.6 45 80-127 11-55 (386)
459 KOG0730|consensus 93.9 0.11 2.4E-06 48.0 5.2 62 37-101 421-485 (693)
460 TIGR01241 FtsH_fam ATP-depende 93.9 0.23 5E-06 45.4 7.4 53 46-101 51-105 (495)
461 TIGR02203 MsbA_lipidA lipid A 93.8 0.093 2E-06 48.8 4.9 42 188-229 486-527 (571)
462 cd00983 recA RecA is a bacter 93.8 0.12 2.5E-06 44.5 5.0 44 84-130 55-98 (325)
463 PRK11176 lipid transporter ATP 93.8 0.095 2.1E-06 48.9 4.9 42 189-230 498-539 (582)
464 KOG2227|consensus 93.8 0.24 5.3E-06 44.2 7.0 49 85-134 176-225 (529)
465 COG0210 UvrD Superfamily I DNA 93.7 0.24 5.3E-06 46.9 7.5 70 69-140 2-72 (655)
466 TIGR02204 MsbA_rel ABC transpo 93.7 0.08 1.7E-06 49.3 4.2 43 188-230 493-535 (576)
467 COG1074 RecB ATP-dependent exo 93.7 0.14 3.1E-06 51.5 6.2 56 82-137 14-71 (1139)
468 CHL00095 clpC Clp protease ATP 93.6 0.85 1.8E-05 44.6 11.2 21 85-105 201-221 (821)
469 PRK13764 ATPase; Provisional 93.6 0.11 2.4E-06 48.3 4.9 29 82-111 255-283 (602)
470 TIGR02238 recomb_DMC1 meiotic 93.6 0.34 7.5E-06 41.5 7.6 54 85-138 97-154 (313)
471 PRK11174 cysteine/glutathione 93.6 0.049 1.1E-06 50.9 2.5 43 188-230 502-544 (588)
472 TIGR03375 type_I_sec_LssB type 93.5 0.059 1.3E-06 51.5 3.1 42 188-229 618-659 (694)
473 cd01393 recA_like RecA is a b 93.5 0.27 5.9E-06 39.8 6.6 43 83-125 18-63 (226)
474 TIGR03878 thermo_KaiC_2 KaiC d 93.5 0.22 4.7E-06 41.6 6.0 38 83-123 35-72 (259)
475 KOG0741|consensus 93.4 0.37 8E-06 43.9 7.6 69 51-124 493-573 (744)
476 TIGR02857 CydD thiol reductant 93.4 0.39 8.6E-06 44.3 8.3 42 188-229 475-516 (529)
477 PRK14970 DNA polymerase III su 93.4 1.1 2.4E-05 39.3 10.6 17 86-102 41-57 (367)
478 CHL00176 ftsH cell division pr 93.4 0.63 1.4E-05 43.9 9.4 17 85-101 217-233 (638)
479 COG0467 RAD55 RecA-superfamily 93.3 0.16 3.4E-06 42.3 5.0 54 82-139 21-74 (260)
480 cd01131 PilT Pilus retraction 93.3 0.11 2.5E-06 41.3 4.0 35 87-123 4-38 (198)
481 PF14516 AAA_35: AAA-like doma 93.3 0.48 1E-05 41.0 8.1 48 72-122 18-66 (331)
482 COG3267 ExeA Type II secretory 93.3 0.83 1.8E-05 37.7 8.8 29 81-110 47-76 (269)
483 TIGR02784 addA_alphas double-s 93.2 0.22 4.8E-06 50.3 6.6 56 82-137 8-63 (1141)
484 COG2255 RuvB Holliday junction 93.1 0.28 6.1E-06 41.1 5.9 18 85-102 53-70 (332)
485 KOG0344|consensus 93.1 2.3 5E-05 39.1 12.0 97 93-199 366-466 (593)
486 PF01580 FtsK_SpoIIIE: FtsK/Sp 93.0 0.17 3.8E-06 40.3 4.7 29 82-110 36-64 (205)
487 TIGR02640 gas_vesic_GvpN gas v 93.0 0.089 1.9E-06 43.9 3.1 28 75-102 12-39 (262)
488 PF13555 AAA_29: P-loop contai 93.0 0.069 1.5E-06 34.0 1.7 19 83-101 22-40 (62)
489 COG0630 VirB11 Type IV secreto 92.8 0.14 3.1E-06 43.9 4.1 52 69-124 127-179 (312)
490 PRK13850 type IV secretion sys 92.8 0.15 3.3E-06 48.2 4.6 50 85-139 140-189 (670)
491 cd01123 Rad51_DMC1_radA Rad51_ 92.8 0.36 7.9E-06 39.3 6.3 42 83-124 18-62 (235)
492 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.7 0.48 1E-05 35.6 6.5 29 189-217 88-116 (144)
493 PRK13700 conjugal transfer pro 92.7 0.13 2.8E-06 48.6 3.9 68 56-128 157-226 (732)
494 TIGR03743 SXT_TraD conjugative 92.7 0.35 7.6E-06 45.6 6.8 55 84-141 176-232 (634)
495 PRK07773 replicative DNA helic 92.7 0.63 1.4E-05 45.8 8.8 148 76-229 205-376 (886)
496 COG1136 SalX ABC-type antimicr 92.7 0.39 8.5E-06 39.0 6.2 48 189-236 160-207 (226)
497 PRK10263 DNA translocase FtsK; 92.6 0.95 2.1E-05 45.6 9.8 25 86-110 1012-1036(1355)
498 COG4987 CydC ABC-type transpor 92.6 0.35 7.5E-06 44.0 6.3 63 168-230 456-533 (573)
499 PRK10790 putative multidrug tr 92.6 0.098 2.1E-06 48.9 3.1 42 188-229 493-534 (592)
500 PHA02542 41 41 helicase; Provi 92.6 0.6 1.3E-05 42.5 7.9 35 85-122 191-225 (473)
No 1
>KOG0330|consensus
Probab=100.00 E-value=8.9e-41 Score=277.65 Aligned_cols=211 Identities=34% Similarity=0.536 Sum_probs=201.2
Q ss_pred ccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 44 HVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
..-.+|.++++.+.+.+++++.|+..|+++|++++|.++.|++++..+.||||||.+|++|+++.+....+.++++|++|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 34457999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHh-cCCCCCCCccEEEEccchhhh
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMIS-RGALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~~~~~l~~lVvDE~h~~~ 202 (258)
+|+|+.|+...+..+++.+++.+.++.||.....+...+...++|+|+||++|++++. .+.+++..++++|+||||+++
T Consensus 138 tRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred cHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 9999999999999999999999999999999998888888899999999999999998 588999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCc
Q psy4698 203 SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (258)
+.+|...+..+++.+|...|.+++|||||..+..+.+..+.+|+.|.++..-
T Consensus 218 d~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky 269 (476)
T KOG0330|consen 218 DMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY 269 (476)
T ss_pred hhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh
Confidence 9999999999999999999999999999999999999999999999886543
No 2
>KOG0331|consensus
Probab=100.00 E-value=5.9e-40 Score=287.35 Aligned_cols=205 Identities=35% Similarity=0.614 Sum_probs=196.4
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh------ccccceEEEE
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ------NIKECQALIL 121 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~------~~~~~~~lil 121 (258)
.|..+++++.+...++..||..|+++|...||.++.|+|++..+.||||||++|++|++.++.. ...++++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999986 3457899999
Q ss_pred eccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 122 APTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 122 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
+|||+||.|+...+..++....+.+.+++|+.....+.+.+.++++|+|+||++|.++++.+...+++++++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHhC-CCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 202 LSRGFKDQIYDVFKHL-NNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 202 ~~~~~~~~~~~~~~~l-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
++.+|..++.+++..+ ++..|++++|||+|..++.++..|+.+|+.|.+-.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~ 303 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGN 303 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecc
Confidence 9999999999999999 55568999999999999999999999999998853
No 3
>KOG0328|consensus
Probab=100.00 E-value=8e-40 Score=262.02 Aligned_cols=218 Identities=64% Similarity=1.028 Sum_probs=209.3
Q ss_pred cccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEE
Q psy4698 41 NWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALI 120 (258)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~li 120 (258)
........|+++++.+++++.....||.+|+.+|+.|++.++.|+|+++.+..|+|||.+|-+.+++.+.-+.+..+++|
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 33456678999999999999999999999999999999999999999999999999999999999998888777789999
Q ss_pred EeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchh
Q psy4698 121 LAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADE 200 (258)
Q Consensus 121 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 200 (258)
++|||+|+.|..+++..++..+++.+..+.|+.+..+..+.+..|.+++.+||++++++++++.+.-+.++++|+||+|.
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccCC
Q psy4698 201 MLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELTLE 258 (258)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (258)
|++.++..++..+++.+|+.+|++++|||+|.++.+..++|+.||+.|.+...++|+|
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlE 238 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLE 238 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999986
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-38 Score=287.39 Aligned_cols=209 Identities=43% Similarity=0.687 Sum_probs=196.1
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh-ccccce-EEEEecc
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ-NIKECQ-ALILAPT 124 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~-~lil~P~ 124 (258)
..|.++++++.+++.+.+.||..|+++|..++|.++.|+|+++.++||||||.+|++|+++.+.. ...... +||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999874 222222 9999999
Q ss_pred HHHHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 125 RELAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
|+||.|+++.+..++... ++.+..++|+.....+...+..+++|+|+||+++++++.++.+.+++++++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999988 7899999999998888888888899999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 204 RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
.+|...+..++..++.+.|++++|||+|..+..+.+.++++|+.|.+..+..
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~ 240 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL 240 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc
Confidence 9999999999999999999999999999999999999999999999985544
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.1e-38 Score=286.34 Aligned_cols=216 Identities=28% Similarity=0.494 Sum_probs=197.4
Q ss_pred cccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-----c
Q psy4698 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-----I 113 (258)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-----~ 113 (258)
..+.++...+|+++++++.+.+.|.+.||..|+++|.+++|.++.|+|+++++|||||||++|++|++..+... .
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 34556677899999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
.++++||++||++|+.|+.+.++.++...++.+...+++.....+...+..+++|+|+||++|.+++..+...++++++|
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 35789999999999999999999999888888889999988888888888899999999999999999988889999999
Q ss_pred EEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcC-CCeEEEecCCc
Q psy4698 194 VLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMR-DPIKILVKKEE 254 (258)
Q Consensus 194 VvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~v~~~~~~ 254 (258)
|+||||++++.+|...+..++..++++.|++++|||+|++++.+.+.++. +|+.+.+...+
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~ 343 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD 343 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999886 68888775544
No 6
>KOG0338|consensus
Probab=100.00 E-value=4e-39 Score=275.67 Aligned_cols=210 Identities=33% Similarity=0.573 Sum_probs=199.2
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc---cceEEEEe
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK---ECQALILA 122 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~---~~~~lil~ 122 (258)
..+|.+++++-.+++.+...||..|+|+|..++|..+-|++++.++.||||||.+|++|+++++....+ -.|+||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999976533 35899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccchhh
Q psy4698 123 PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 123 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~~ 201 (258)
|||+|+.|++.+.++++.++++.++.+.||...+.+-..++..+||+|+||++|.+++++ -.|+++++..+|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999889999999999999999999987 4688999999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 202 LSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
++.+|..++..+++..+++.|.++|||||+.++++++...++.|+.|.+++..-
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~ 393 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD 393 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999987654
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-37 Score=281.32 Aligned_cols=214 Identities=30% Similarity=0.544 Sum_probs=195.1
Q ss_pred cccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh-------
Q psy4698 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ------- 111 (258)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~------- 111 (258)
+.++++...+|+++++++.+.+.|.+.||..|+++|.++++.++.|+|+++++|||||||++|++|++..+..
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 4566677889999999999999999999999999999999999999999999999999999999999987753
Q ss_pred ccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCcc
Q psy4698 112 NIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIR 191 (258)
Q Consensus 112 ~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~ 191 (258)
...++++||++||++|+.|+.+.++.++...++.+....|+.....+...+..+++|+|+||++|.+++.++.+.+++++
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 22457899999999999999999999988888888888888888777778888899999999999999999888999999
Q ss_pred EEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 192 MFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 192 ~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
+||+||||+|++.+|...+..++..++ +.|++++|||++++++.+.+.++.++..|.+...
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~ 333 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP 333 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999998884 6899999999999999999999999998887543
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-37 Score=273.90 Aligned_cols=208 Identities=31% Similarity=0.486 Sum_probs=190.7
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-------cccceEE
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-------IKECQAL 119 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-------~~~~~~l 119 (258)
..|+++++++.+.+.|.+.||..|+++|.+++|.++.|+|++++||||||||++|++|+++.+... ..++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 579999999999999999999999999999999999999999999999999999999999988642 2346899
Q ss_pred EEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccch
Q psy4698 120 ILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEAD 199 (258)
Q Consensus 120 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 199 (258)
|++|+++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||+++.+++..+.+.++++++||+||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 99999999999999999999988999999999888777777778889999999999999999988999999999999999
Q ss_pred hhhccCcHHHHHHHHHhCCC--CccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCc
Q psy4698 200 EMLSRGFKDQIYDVFKHLNN--DVQVILLSATMPADVLDVSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (258)
++++.++...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.+..
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~ 224 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ 224 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC
Confidence 99999999999999999874 45789999999999999999999999999886554
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.2e-37 Score=277.84 Aligned_cols=207 Identities=37% Similarity=0.650 Sum_probs=193.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
.+|+++++++.+.+.+.+.||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+......++++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 47999999999999999999999999999999999999999999999999999999999999977666678999999999
Q ss_pred HHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 127 LAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
|+.|+.+.++.++... ++.+..++|+.....+...+..+++|+|+||+++.+++.++.+.++++++||+||||++++.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999887654 688888999988888888888889999999999999999988899999999999999999999
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
+...+..++..++...|++++|||+|+.+..+.+.++.+|..+.+...
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 211 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST 211 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC
Confidence 999999999999999999999999999999999999999999988654
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-37 Score=284.57 Aligned_cols=209 Identities=38% Similarity=0.647 Sum_probs=194.3
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
..|.++++++.+++.|.+.||..|+++|.++++.++.|+++++.||||+|||++|.+|+++.+.....++++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999999877666679999999999
Q ss_pred HHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 127 LAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
|+.|+++.++.+.... ++.+..++++.....+...+..+++|+|+||+++++++.++.+.++++++||+||||++++.+
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc
Confidence 9999999999887654 688888899988888888888889999999999999999988999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
+...+..++..++...|++++|||+|..+..+.+.|+.+|..|.+.....
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~ 215 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT 215 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc
Confidence 99999999999999999999999999999999999999999998866544
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.8e-37 Score=275.58 Aligned_cols=207 Identities=37% Similarity=0.637 Sum_probs=190.8
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc------ccceEEEE
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI------KECQALIL 121 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~------~~~~~lil 121 (258)
+|+++++++.+.+.|.+.||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999886532 23589999
Q ss_pred eccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 122 APTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 122 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
+||++|+.|+.+.++.+....++.+..++|+.....+...+..+++|+|+||++|++++....+.++++++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888888888889998877777777788999999999999999988889999999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCc
Q psy4698 202 LSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (258)
++.++...+..++..++...|++++|||+++++..+...++.+|..+.+....
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~ 214 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN 214 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999988775543
No 12
>KOG0346|consensus
Probab=100.00 E-value=9e-38 Score=263.25 Aligned_cols=210 Identities=32% Similarity=0.500 Sum_probs=187.8
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc------cccceEEE
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN------IKECQALI 120 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~------~~~~~~li 120 (258)
.+|+++++++.+++++.+.|+..|+-+|..++|.+++|+|++..|.||||||.+|++|+++.+... ..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999998653 34678999
Q ss_pred EeccHHHHHHHHHHHHHhcCCCC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC-CCCCCccEEEEcc
Q psy4698 121 LAPTRELAQQIQKVVIALGDFMS--VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA-LSTKQIRMFVLDE 197 (258)
Q Consensus 121 l~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~l~~lVvDE 197 (258)
++||++||.|.+.++.++..... +++..+.+..+.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988765443 34444444444445556777789999999999999998876 6788999999999
Q ss_pred chhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 198 ADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 198 ~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
||.++..++...+.++.+.+|+.+|.++||||++.+++.+.+.|+++|+++...++++.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~ 237 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELP 237 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999999999888874
No 13
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.3e-36 Score=267.03 Aligned_cols=220 Identities=67% Similarity=1.093 Sum_probs=198.5
Q ss_pred cccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccc
Q psy4698 37 LIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKEC 116 (258)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~ 116 (258)
..+.+.......|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||||||++|+++++..+.....+.
T Consensus 18 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~ 97 (401)
T PTZ00424 18 TIESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNAC 97 (401)
T ss_pred ccccccccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCc
Confidence 33444445567899999999999999999999999999999999999999999999999999999999999887655667
Q ss_pred eEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEc
Q psy4698 117 QALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLD 196 (258)
Q Consensus 117 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvD 196 (258)
++||++|+++|+.|+.+.+..++...+..+..+.|+.........+..+++|+|+||+++++++.++...++++++||+|
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 89999999999999999999998888888888888887777777777889999999999999999888889999999999
Q ss_pred cchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 197 EADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 197 E~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
|+|++.+.++...+..+++.++++.|++++|||+|+++..+...++.+|..+.+...+.+
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT 237 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 999999989999999999999999999999999999999999999999998887765544
No 14
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3.9e-36 Score=241.84 Aligned_cols=201 Identities=52% Similarity=0.843 Sum_probs=185.8
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc--cccceEEEEeccHH
Q psy4698 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN--IKECQALILAPTRE 126 (258)
Q Consensus 49 ~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~--~~~~~~lil~P~~~ 126 (258)
|+++++++.+.+.|.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6889999999999999999999999999999999999999999999999999999999998876 56679999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
|+.|+...++.+....+..+..+.|+...........++++|+|+||+.+.+++.++...+++++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988778888888888877766666666799999999999999988888889999999999999988888
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEE
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKIL 249 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~ 249 (258)
...+..+++.++..+|++++|||+++.+.++++.++++|++|.
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 203 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEeC
Confidence 9999999999999999999999999999999999999999873
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-36 Score=276.23 Aligned_cols=210 Identities=33% Similarity=0.542 Sum_probs=190.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-------cccceEE
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-------IKECQAL 119 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-------~~~~~~l 119 (258)
.+|+++++++.+++.|.+.||..|+++|.+++|.++.|+|+++.+|||||||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999999999988542 1246899
Q ss_pred EEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccc
Q psy4698 120 ILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEA 198 (258)
Q Consensus 120 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~ 198 (258)
|++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|++++... .+.++.+++||+|||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999998887777777778999999999999998764 467889999999999
Q ss_pred hhhhccCcHHHHHHHHHhCCC--CccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 199 DEMLSRGFKDQIYDVFKHLNN--DVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 199 h~~~~~~~~~~~~~~~~~l~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
|++++.++...+..+++.++. ..|++++|||++..+..+...++.+|..+.+.....+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~ 228 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETIT 228 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccc
Confidence 999999999999999999986 6899999999999999999999999988877665543
No 16
>KOG0343|consensus
Probab=100.00 E-value=4.4e-37 Score=265.35 Aligned_cols=206 Identities=33% Similarity=0.546 Sum_probs=193.4
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc----ccceEEEEe
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI----KECQALILA 122 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~----~~~~~lil~ 122 (258)
..|++++++..+.+.|+..+|..++.+|+.++|..++|++++-.+.||||||++++.|+++.+...+ .|.-+|||+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999998753 345699999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccchhh
Q psy4698 123 PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 123 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h~~ 201 (258)
|||+||.|.+.++.+.++..++......||.....+...+.+ ++|+||||++|++++..+ .++.+++.++|+||||++
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 999999999999999999999999999999998888777766 899999999999999774 578899999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 202 LSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
++.+|...+..++..+|+..|++++|||-++.++++++..++||++|.+...
T Consensus 228 LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~ 279 (758)
T KOG0343|consen 228 LDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHEN 279 (758)
T ss_pred HHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecc
Confidence 9999999999999999999999999999999999999999999999999743
No 17
>KOG0345|consensus
Probab=100.00 E-value=3e-36 Score=255.93 Aligned_cols=207 Identities=33% Similarity=0.598 Sum_probs=185.7
Q ss_pred CcCCCC--CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc-----cceEEE
Q psy4698 48 NFDDME--LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK-----ECQALI 120 (258)
Q Consensus 48 ~~~~~~--~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~-----~~~~li 120 (258)
.|++++ +++++++.+.+.||..+||+|..++|.++.++|+++.++||||||++|++|+++.+..... ...++|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 466665 5699999999999999999999999999999999999999999999999999999954321 236999
Q ss_pred EeccHHHHHHHHHHHHHhcCC-CCceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHhcC--CCCCCCccEEEEc
Q psy4698 121 LAPTRELAQQIQKVVIALGDF-MSVSCHACIGGTIVRDDIRKLEA-GAQVVVGTPGRVFDMISRG--ALSTKQIRMFVLD 196 (258)
Q Consensus 121 l~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~Tp~~l~~~l~~~--~~~~~~l~~lVvD 196 (258)
|+|||+|+.|+.+++..|... .++++.++.||.........+.+ +++|+||||++|++++++. .+++.+++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999998765 67888999999888877766654 5889999999999999884 4556699999999
Q ss_pred cchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCc
Q psy4698 197 EADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 197 E~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (258)
|||++++.+|...+..++..+|+..++=++|||...++.++.+..++||+.|.|..++
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~ 222 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKS 222 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999996555
No 18
>KOG0342|consensus
Probab=100.00 E-value=2.7e-36 Score=257.49 Aligned_cols=210 Identities=32% Similarity=0.525 Sum_probs=194.1
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc----cccceEEEE
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN----IKECQALIL 121 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~----~~~~~~lil 121 (258)
...|++..+++...+++..+||..++++|...++.++.|+|+++.|-||+|||+++++|+++.+... .++..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3468899999999999999999999999999999999999999999999999999999999998764 345679999
Q ss_pred eccHHHHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccch
Q psy4698 122 APTRELAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEAD 199 (258)
Q Consensus 122 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h 199 (258)
||||+|+.|.+.+++.+.... +..+....|+.....+...+..+++|+|+||++|++++++ ..+...+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999988877 8899999999999988888888999999999999999988 45666788999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcC-CCeEEEecCCcc
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMR-DPIKILVKKEEL 255 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~v~~~~~~~ 255 (258)
++++.+|...+..++..+++..|.+++|||.|.+++++++.-++ +|++|.++++.-
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~ 297 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE 297 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC
Confidence 99999999999999999999999999999999999999999877 699999977653
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.4e-35 Score=262.30 Aligned_cols=210 Identities=36% Similarity=0.573 Sum_probs=187.5
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc-------ccceE
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI-------KECQA 118 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~-------~~~~~ 118 (258)
...|.++++++.+.+.|.+.|+..++++|.++++.+..|+|+++.+|||||||++|++|+++.+.... ...++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34688999999999999999999999999999999999999999999999999999999999886542 14689
Q ss_pred EEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEcc
Q psy4698 119 LILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDE 197 (258)
Q Consensus 119 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE 197 (258)
||++||++|+.|+++.++.+....++.+..+.|+.....+...+. ..++|+|+||++|+.++.+....++++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999998888888888888876655555544 4589999999999999988888899999999999
Q ss_pred chhhhccCcHHHHHHHHHhCCC--CccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 198 ADEMLSRGFKDQIYDVFKHLNN--DVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 198 ~h~~~~~~~~~~~~~~~~~l~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
+|++.+.++...+..+++.++. +.|++++|||++.++.++.+.++.+|.++.+...+.
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 305 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV 305 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC
Confidence 9999999999999999998864 579999999999999999999999999988765543
No 20
>KOG0327|consensus
Probab=100.00 E-value=9.8e-37 Score=253.58 Aligned_cols=232 Identities=74% Similarity=1.154 Sum_probs=217.9
Q ss_pred CCCCCCcccCcccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHH
Q psy4698 27 NGPPGMAVDGLIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISIL 106 (258)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l 106 (258)
.+|.++..+..++++|.....+|+++++.+.+++.++..||.+|+++|+.|+..+..|.|+.+.+.+|+|||.++..+++
T Consensus 6 ~g~~~~e~~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iL 85 (397)
T KOG0327|consen 6 NGPDGMEPEGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISIL 85 (397)
T ss_pred CCCcccCccccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHH
Confidence 46666777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchH-HHHHHHhcCCcEEEeChHHHHHHHhcCCC
Q psy4698 107 QQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVR-DDIRKLEAGAQVVVGTPGRVFDMISRGAL 185 (258)
Q Consensus 107 ~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 185 (258)
+.+......+++++++|+++|+.|...+...++...++.+..+.|+.... +.......+..|+++||++++.++..+.+
T Consensus 86 q~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l 165 (397)
T KOG0327|consen 86 QQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSL 165 (397)
T ss_pred hhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccc
Confidence 99988878889999999999999999999999999999999999888776 44444555689999999999999999989
Q ss_pred CCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccCC
Q psy4698 186 STKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELTLE 258 (258)
Q Consensus 186 ~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (258)
..+.++++|+||+|.++..++..++..+++.+|++.|++++|||+|.++....+.|+++|+.|.+.++++|+|
T Consensus 166 ~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~ 238 (397)
T KOG0327|consen 166 STDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLE 238 (397)
T ss_pred cccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.9e-35 Score=262.44 Aligned_cols=206 Identities=32% Similarity=0.532 Sum_probs=189.1
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc----cccceEEEEec
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN----IKECQALILAP 123 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~----~~~~~~lil~P 123 (258)
+|+++++++.+.+.|.+.||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..+.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999988542 23468999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
+++|+.|+++.+..++...++.+..+.|+.........+..+++|+|+||++|++++..+.+.+.++++||+||||++++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999999999999999887777777777899999999999999999988999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCccEEEEEeeCCh-hHHHHHHHhcCCCeEEEecCC
Q psy4698 204 RGFKDQIYDVFKHLNNDVQVILLSATMPA-DVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~v~~~~~ 253 (258)
.++...+..+...++...|++++|||++. .+.++.+.++.+|+.+.+...
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~ 212 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS 212 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC
Confidence 99999999999999888999999999985 588999999999999887543
No 22
>KOG0348|consensus
Probab=100.00 E-value=1.6e-36 Score=261.08 Aligned_cols=204 Identities=30% Similarity=0.504 Sum_probs=184.2
Q ss_pred cCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc------cccceEE
Q psy4698 47 ENFDDMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN------IKECQAL 119 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~------~~~~~~l 119 (258)
..|.++++++.+...|.. +++..|+.+|.+++|.+++|+|++|.++||||||++|++|+++.+..- ..|+-++
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 468999999999999984 799999999999999999999999999999999999999999998653 3356799
Q ss_pred EEeccHHHHHHHHHHHHHhcCCCCceE-EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEcc
Q psy4698 120 ILAPTRELAQQIQKVVIALGDFMSVSC-HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDE 197 (258)
Q Consensus 120 il~P~~~l~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE 197 (258)
|++|||+||.|.++.+.++.+..-..+ +.+.||.....+...++.|++|+|+||++|.+++.+ ..+.+++++|+|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 999999999999999999887655444 668899888888899999999999999999999987 567889999999999
Q ss_pred chhhhccCcHHHHHHHHHhCC-------------CCccEEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 198 ADEMLSRGFKDQIYDVFKHLN-------------NDVQVILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 198 ~h~~~~~~~~~~~~~~~~~l~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
+|++++-+|...+..++..+. +..|.+++|||+...+.++....+.||+.|..
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~l 361 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISL 361 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeec
Confidence 999999999999999988772 13588999999999999999999999999983
No 23
>KOG0339|consensus
Probab=100.00 E-value=8.3e-36 Score=255.27 Aligned_cols=215 Identities=30% Similarity=0.507 Sum_probs=203.5
Q ss_pred cccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc----
Q psy4698 37 LIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN---- 112 (258)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~---- 112 (258)
..+.+.++....|+.++++..+....++..|..|+++|.+++|..+.|++++=.+.||||||-+|+.|++.++...
T Consensus 213 v~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~ 292 (731)
T KOG0339|consen 213 VSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK 292 (731)
T ss_pred eccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc
Confidence 3445667777899999999999999999999999999999999999999999999999999999999999888543
Q ss_pred -cccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCcc
Q psy4698 113 -IKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIR 191 (258)
Q Consensus 113 -~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~ 191 (258)
+.++-.+|++||++|+.|++.++++|++.+++++.+++|+....++...+..++.|+||||++|+++++-+..++.+++
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeee
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 192 MFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 192 ~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
+||+||+++|++.+|..++..|...++++.|.|++|||++..++.+++.++.+|+.|..-
T Consensus 373 ~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg 432 (731)
T KOG0339|consen 373 YLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG 432 (731)
T ss_pred EEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe
Confidence 999999999999999999999999999999999999999999999999999999998663
No 24
>KOG0326|consensus
Probab=100.00 E-value=2.2e-35 Score=240.18 Aligned_cols=206 Identities=38% Similarity=0.642 Sum_probs=198.8
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
..|+++.+...++....+.||.+|+|+|.+++|.++.|+|+++.+..|+|||.+|.+|+++.+.......+++|++|+|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 46999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
||.|....|+++++.+++.+....|+.+.++..-.+..+.+++|+||++++++...+--.++++.++|+||||.+++..|
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence 99999999999999999999999999999999888999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
...+..++..+|++.|++++|||+|-.++.|.+.++++|..|..-+
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~ 290 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME 290 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh
Confidence 9999999999999999999999999999999999999999997644
No 25
>KOG0335|consensus
Probab=100.00 E-value=1.6e-34 Score=249.52 Aligned_cols=212 Identities=35% Similarity=0.527 Sum_probs=193.4
Q ss_pred cccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc----
Q psy4698 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK---- 114 (258)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~---- 114 (258)
..+.++....|.+..+.+.+..+++..++..|+|+|+.++|.+..|++++++|+||||||.+|++|++..+...+.
T Consensus 66 G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~ 145 (482)
T KOG0335|consen 66 GRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRG 145 (482)
T ss_pred CCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCc
Confidence 3444555568888888999999999999999999999999999999999999999999999999999999876522
Q ss_pred ------cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCC
Q psy4698 115 ------ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTK 188 (258)
Q Consensus 115 ------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 188 (258)
.++++|++||++|+.|++++++++.-...+.....+++.....+.+.+.++|+|+|+||++|.+++..+.+.++
T Consensus 146 ~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~ 225 (482)
T KOG0335|consen 146 ESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLD 225 (482)
T ss_pred ccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehh
Confidence 47999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccchhhhc-cCcHHHHHHHHHhCCC----CccEEEEEeeCChhHHHHHHHhcCC-CeEEEe
Q psy4698 189 QIRMFVLDEADEMLS-RGFKDQIYDVFKHLNN----DVQVILLSATMPADVLDVSMKFMRD-PIKILV 250 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~-~~~~~~~~~~~~~l~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~v~~ 250 (258)
+++++|+||||+|++ .+|..++..++..... ..|.++||||+|.+++.++..|+.+ -+.+.|
T Consensus 226 ~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV 293 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAV 293 (482)
T ss_pred hCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEE
Confidence 999999999999999 8999999999988753 6799999999999999999999997 555555
No 26
>KOG0336|consensus
Probab=100.00 E-value=6.5e-34 Score=238.36 Aligned_cols=212 Identities=32% Similarity=0.520 Sum_probs=190.2
Q ss_pred cccccCcCC-CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh------cccc
Q psy4698 43 DHVAENFDD-MELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ------NIKE 115 (258)
Q Consensus 43 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~------~~~~ 115 (258)
+++.-+|++ +.-.+.+.+.+++.||.+|+|+|.++||.+++|.+++.++.||+|||++||+|.+.++.. ...+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 333345654 356789999999999999999999999999999999999999999999999998877643 2456
Q ss_pred ceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy4698 116 CQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVL 195 (258)
Q Consensus 116 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVv 195 (258)
+.+++++|+++|+.|+.-.+++. ++.++...+++|+.+...+...++.+.+|+|+||++|.++...+.+++..+.++|+
T Consensus 295 p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVl 373 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVL 373 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEe
Confidence 78999999999999998877665 45577888899999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 196 DEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 196 DE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
||||+|++.+|..++.+++-.++++.|+++.|||+|..+.+++..|+++|++|.+-.=++
T Consensus 374 DEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL 433 (629)
T KOG0336|consen 374 DEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDL 433 (629)
T ss_pred cchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccce
Confidence 999999999999999999999999999999999999999999999999999998755444
No 27
>KOG0341|consensus
Probab=100.00 E-value=1.3e-34 Score=241.22 Aligned_cols=212 Identities=30% Similarity=0.539 Sum_probs=195.6
Q ss_pred ccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh--------
Q psy4698 40 TNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ-------- 111 (258)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~-------- 111 (258)
...++.+.+|.++.++..+++.|++.|+.+|+|+|.+-+|.+++|++.+-.+-||||||++|.+|++.....
T Consensus 163 d~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~ 242 (610)
T KOG0341|consen 163 DDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA 242 (610)
T ss_pred CCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc
Confidence 455677889999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ccccceEEEEeccHHHHHHHHHHHHHhcCC------CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC
Q psy4698 112 NIKECQALILAPTRELAQQIQKVVIALGDF------MSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL 185 (258)
Q Consensus 112 ~~~~~~~lil~P~~~l~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 185 (258)
.+.++-.+|+||+|+|+.|.+..+..+... ..++...+.|+...+.+...++.|.+|+|+||++|.+++..+.+
T Consensus 243 ~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~ 322 (610)
T KOG0341|consen 243 RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM 322 (610)
T ss_pred cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc
Confidence 355788999999999999999988776532 24677888999999999999999999999999999999999999
Q ss_pred CCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 186 STKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 186 ~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
++.-++++++||||+|.+.+|...+..++..+....|.+++|||||+.++.|++.-+-.|+.|.|-
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVG 388 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVG 388 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999884
No 28
>KOG0340|consensus
Probab=100.00 E-value=2.3e-33 Score=231.07 Aligned_cols=215 Identities=33% Similarity=0.466 Sum_probs=196.8
Q ss_pred ccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 44 HVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
.....|+.+|+++++.+.++..|+..|+|+|..++|.++.|+|++=+|.||||||.++.+|+++++.....+.-++|++|
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC----CCCCCCccEEEEccch
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG----ALSTKQIRMFVLDEAD 199 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~~~l~~lVvDE~h 199 (258)
|++|+.|+.+.+..+++.+++++...+|+...-.+...+...++++|+||+++..++..+ ...+++++++|+||||
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 999999999999999999999999999999888888888888999999999999998775 3457889999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCC--CeEEEecCCcccCC
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRD--PIKILVKKEELTLE 258 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 258 (258)
++++..|...+..+.+.+|...|.+++|||+++.++++..-..+. +..+.+.++..|+|
T Consensus 164 rvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstve 224 (442)
T KOG0340|consen 164 RVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVE 224 (442)
T ss_pred hhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchh
Confidence 999999999999999999999999999999999998888766664 66677766666654
No 29
>KOG0333|consensus
Probab=100.00 E-value=4.5e-33 Score=239.33 Aligned_cols=216 Identities=31% Similarity=0.522 Sum_probs=200.2
Q ss_pred CcccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh----
Q psy4698 36 GLIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ---- 111 (258)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~---- 111 (258)
.+.....+....+|++.+++.++++.+.+.|+..|+|+|+.++|..++.+|++..+.||||||.+|++|++..+..
T Consensus 234 s~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 234 SIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred eecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 4555666778889999999999999999999999999999999999999999999999999999999999887633
Q ss_pred -----ccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCC
Q psy4698 112 -----NIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALS 186 (258)
Q Consensus 112 -----~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~ 186 (258)
...++.++++.||++|++|+...-.+|++..+..+..+.|+....++-..+..||.|+|+||++|.+.+.+..+-
T Consensus 314 ~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lv 393 (673)
T KOG0333|consen 314 ARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLV 393 (673)
T ss_pred chhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCC-----------------------C--ccEEEEEeeCChhHHHHHHHh
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN-----------------------D--VQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~-----------------------~--~~~i~~SAT~~~~~~~~~~~~ 241 (258)
++++.+||+||||+|.+.+|..++..++..+|. . .|.++||||+|+.++.+++.|
T Consensus 394 l~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~y 473 (673)
T KOG0333|consen 394 LNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSY 473 (673)
T ss_pred hccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHH
Confidence 999999999999999999999999999999863 1 699999999999999999999
Q ss_pred cCCCeEEEec
Q psy4698 242 MRDPIKILVK 251 (258)
Q Consensus 242 ~~~~~~v~~~ 251 (258)
+++|+.|.+.
T Consensus 474 lr~pv~vtig 483 (673)
T KOG0333|consen 474 LRRPVVVTIG 483 (673)
T ss_pred hhCCeEEEec
Confidence 9999999873
No 30
>KOG0337|consensus
Probab=100.00 E-value=8e-33 Score=232.33 Aligned_cols=206 Identities=32% Similarity=0.553 Sum_probs=194.8
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEecc
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPT 124 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~ 124 (258)
...|..++++..+.+++.+.||..|+|+|++.+|.++++++++-.+-||||||.++++|+++.+... ..+.|+++++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 4679999999999999999999999999999999999999999999999999999999999998764 345699999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc
Q psy4698 125 RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR 204 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~ 204 (258)
++|+.|..++.+.+++.++.++.+.+|+....+++..+..+.||+++||+++..+.-.-.+.++.+.++|+||+|+++..
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999988999999999998877666688999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
+|..++..++.+++.+.|.++||||+|+.+-++.+.-+.+|+.|+++
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 99999999999999999999999999999999999999999999964
No 31
>KOG0329|consensus
Probab=100.00 E-value=5.5e-32 Score=214.41 Aligned_cols=207 Identities=38% Similarity=0.645 Sum_probs=194.1
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
..|.++-+.+++++++...||.+|+.+|.+++|...-|-+++..+..|.|||.++.+.-++.+........++++|.||+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 56999999999999999999999999999999999999999999999999999999999999998877788999999999
Q ss_pred HHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-
Q psy4698 127 LAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR- 204 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~- 204 (258)
|+-|+.+...++.+++ ++.+..++||.........+.+.++|+|+||++++.+.+++.+++++++++|+||+|.|+.+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999999999988766 68899999999988888888888999999999999999999999999999999999988765
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
.....+..+++..|...|+.++|||+++++...++.||+||..|.|++|
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE 250 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDE 250 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccch
Confidence 6778888999999999999999999999999999999999999999776
No 32
>KOG0334|consensus
Probab=100.00 E-value=2.1e-32 Score=251.65 Aligned_cols=215 Identities=33% Similarity=0.570 Sum_probs=197.5
Q ss_pred cccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh-----cc
Q psy4698 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ-----NI 113 (258)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~-----~~ 113 (258)
....+.+...|.+.|++..+++.+++.|+.+|+++|.+|||++..|+++|.+|.||||||++|++|++.+... .+
T Consensus 357 g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~g 436 (997)
T KOG0334|consen 357 GKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEG 436 (997)
T ss_pred cCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhC
Confidence 3456778889999999999999999999999999999999999999999999999999999999999977643 25
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC---CCCCCc
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA---LSTKQI 190 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~l 190 (258)
.|+-++|++||++|+.|+.+.++.|.+.+++.+.+.+|+....+++..+.+++.|+||||++..+++-.+. .++.++
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999885543 345566
Q ss_pred cEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 191 RMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
.++|+||||+|++.+|..++..++..+++..|++++|||+|..++.+.+.-+..|+-|.|...
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~ 579 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR 579 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc
Confidence 699999999999999999999999999999999999999999999999999999999877643
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=3.1e-30 Score=241.44 Aligned_cols=191 Identities=22% Similarity=0.310 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH
Q psy4698 54 LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133 (258)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~ 133 (258)
+++.+.+.|++.|+..|+++|.++++.+++|+|+++.+|||||||++|++|+++.+..+ .+.++||++|+++|+.|+..
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998764 45699999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-C---CCCCCCccEEEEccchhhhccCcHHH
Q psy4698 134 VVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-G---ALSTKQIRMFVLDEADEMLSRGFKDQ 209 (258)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~---~~~~~~l~~lVvDE~h~~~~~~~~~~ 209 (258)
.++.++ ..++.+..+.|+... .+...+..+++|+|+||+.+...+.. . ...++++++||+||+|.+.+ .|+..
T Consensus 100 ~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~ 176 (742)
T TIGR03817 100 AVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH 176 (742)
T ss_pred HHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH
Confidence 999987 446777777666654 44455667789999999998653321 1 12378999999999999865 46666
Q ss_pred HHHHHHhC-------CCCccEEEEEeeCChhHHHHHHHhcCCCeEEE
Q psy4698 210 IYDVFKHL-------NNDVQVILLSATMPADVLDVSMKFMRDPIKIL 249 (258)
Q Consensus 210 ~~~~~~~l-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~ 249 (258)
+..+++++ +.++|++++|||+++..+ +++.++..|+.+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i 222 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV 222 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE
Confidence 55555443 467899999999998755 6778888886654
No 34
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.97 E-value=3e-30 Score=201.38 Aligned_cols=166 Identities=30% Similarity=0.531 Sum_probs=144.3
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACI 150 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 150 (258)
|++|.++++.+.+|+++++.+|||+|||++++++++..+.+. +..++++++|+++|+.|....+..++...+..+..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988887 5568999999999999999999999888778888888
Q ss_pred CCcchH-HHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC--CccEEEEE
Q psy4698 151 GGTIVR-DDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN--DVQVILLS 227 (258)
Q Consensus 151 ~~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~--~~~~i~~S 227 (258)
++.... .....+.++++|+|+||+++.+++..+...+.++++||+||+|.+....+...+..+++.+.. +.|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 877654 444455667999999999999999986667788999999999999887888888888888743 58999999
Q ss_pred eeCChhHHHH
Q psy4698 228 ATMPADVLDV 237 (258)
Q Consensus 228 AT~~~~~~~~ 237 (258)
||++.+++++
T Consensus 160 AT~~~~~~~~ 169 (169)
T PF00270_consen 160 ATLPSNVEKL 169 (169)
T ss_dssp SSSTHHHHHH
T ss_pred eCCChhHhhC
Confidence 9999777653
No 35
>KOG4284|consensus
Probab=99.97 E-value=9.3e-31 Score=229.83 Aligned_cols=208 Identities=36% Similarity=0.601 Sum_probs=194.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
..|+++.+...++..|+..+|..|+++|..|+|.+..+-|+||.+..|+|||++|...+++.+......++++|++|||+
T Consensus 25 ~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTRE 104 (980)
T KOG4284|consen 25 PGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTRE 104 (980)
T ss_pred CCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchh
Confidence 46999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHhcC-CCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-c
Q psy4698 127 LAQQIQKVVIALGD-FMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS-R 204 (258)
Q Consensus 127 l~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~-~ 204 (258)
++.|+.+.+..++. ..++.|..+.||.........++. ++|+||||+++.+++..+.++++.++++|+||||.+++ .
T Consensus 105 iaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~ 183 (980)
T KOG4284|consen 105 IAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTE 183 (980)
T ss_pred hhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchh
Confidence 99999999999876 568999999999988777666665 78999999999999999999999999999999999988 5
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
.|...+..++..+|...|++.+|||.|..+.+.+.+||+||.+|+.+..+.
T Consensus 184 sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~ 234 (980)
T KOG4284|consen 184 SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV 234 (980)
T ss_pred hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc
Confidence 688999999999999999999999999999999999999999999876654
No 36
>KOG0347|consensus
Probab=99.97 E-value=7.7e-30 Score=220.59 Aligned_cols=187 Identities=32% Similarity=0.592 Sum_probs=168.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhc-----------cc
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQN-----------IK 114 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~-----------~~ 114 (258)
..|..++++..++++|...||..|+++|..++|.+..| .|++-.|.||||||++|-+|++..+... .+
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 35899999999999999999999999999999999999 6899999999999999999999955332 23
Q ss_pred cce--EEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC---CCCC
Q psy4698 115 ECQ--ALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL---STKQ 189 (258)
Q Consensus 115 ~~~--~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~~~ 189 (258)
+++ +||++|||+|+.|+.+.+..++...++.+....||.....+.+.++..++|+|+||++||.++..+.. .+++
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 345 99999999999999999999999999999999999999888888998999999999999999987544 4678
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCC-----CCccEEEEEeeCChh
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLN-----NDVQVILLSATMPAD 233 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~-----~~~~~i~~SAT~~~~ 233 (258)
++++|+||+|+|+..++..++..++..++ ...|.+.+|||++-.
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehh
Confidence 89999999999999999999999998886 357999999998653
No 37
>KOG0332|consensus
Probab=99.97 E-value=4.4e-30 Score=213.01 Aligned_cols=217 Identities=39% Similarity=0.632 Sum_probs=191.6
Q ss_pred cccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccc
Q psy4698 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKEC 116 (258)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~ 116 (258)
+.+.--+..+|+++++.+++++.+..++|.+|+.+|..++|.++.. +|++..+..|+|||.+|.+.++.++......+
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVP 161 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCC
Confidence 3444455678999999999999999999999999999999999877 68999999999999999999999999988889
Q ss_pred eEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEE
Q psy4698 117 QALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVL 195 (258)
Q Consensus 117 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVv 195 (258)
++++++|+++|+.|..+++.+.|+..++.......+....... .+ ..+|+|+||+.+.+++.. ..+.+..++.+|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~-~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN-KL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC-cc--hhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 9999999999999999999999999888776666554221110 01 147999999999999887 7788899999999
Q ss_pred ccchhhhcc-CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccCC
Q psy4698 196 DEADEMLSR-GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELTLE 258 (258)
Q Consensus 196 DE~h~~~~~-~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (258)
||||.|++. +|.+.-..+.+.+++++|++++|||+...+.+|+.....+|..+.+..++++|.
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~ 302 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD 302 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc
Confidence 999999876 689999999999999999999999999999999999999999999999999873
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=3e-29 Score=235.71 Aligned_cols=186 Identities=17% Similarity=0.250 Sum_probs=161.3
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
.|+++++++.+.+.+++.|+..|+++|.++++. +..|+|+++++|||||||++|.+|+++.+... +.++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 477889999999999999999999999999986 88999999999999999999999999887653 358999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
|+.|+++.++.+. ..++.+..+.|+......+ ...++|+|+||+++..++.++...++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 4578888888876543321 24579999999999999887777789999999999999988889
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
+..+..++.++..+.|+|++|||+++ ..++.++
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n-~~~la~w 188 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN-AEELAEW 188 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHH
Confidence 99999999999989999999999986 4666654
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=2.2e-29 Score=237.25 Aligned_cols=185 Identities=23% Similarity=0.292 Sum_probs=155.7
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
.|+++++++.+.+.+++.|+..|+++|.++++. +..|+|+++++|||||||++|.+++++.+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578899999999999999999999999999998 7889999999999999999999999998863 458999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
|+.|.++.++.+.. .++.+..+.|+...... ....++|+|+||+++..+++++...++++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999988753 47788888877654332 123479999999999999887666788999999999999988788
Q ss_pred HHHHHHHHHhC---CCCccEEEEEeeCChhHHHHHHH
Q psy4698 207 KDQIYDVFKHL---NNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 207 ~~~~~~~~~~l---~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
+..+..++.++ .++.|+|++|||+++ ..++.++
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~w 190 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADW 190 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHH
Confidence 87777665554 577899999999986 3444443
No 40
>KOG0350|consensus
Probab=99.96 E-value=4.8e-28 Score=207.40 Aligned_cols=205 Identities=24% Similarity=0.378 Sum_probs=171.2
Q ss_pred CcCCCCCCHHHHHH----------HHHCCCCCCcHHHHHHhhhhhc---------CCcEEEEcccCCCcchHhHHHHHHH
Q psy4698 48 NFDDMELSEELLRG----------IYAYGFEKPSAIQQRAIIPCVR---------GNDVIAQAQSGTGKTATFSISILQQ 108 (258)
Q Consensus 48 ~~~~~~~~~~l~~~----------l~~~~~~~~~~~Q~~~~~~l~~---------g~~~li~~~tGsGKT~~~l~~~l~~ 108 (258)
-|+.++++..+... +.++++.+.+|+|..++|.++. ++|++|.||||||||++|.+|+++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 35666666555444 8889999999999999999842 4789999999999999999999999
Q ss_pred hhhc-cccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC-----CcEEEeChHHHHHHHhc
Q psy4698 109 VDQN-IKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG-----AQVVVGTPGRVFDMISR 182 (258)
Q Consensus 109 l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Ilv~Tp~~l~~~l~~ 182 (258)
+... -+.-|++|++|+++|+.|+++.+..++...++.+..+.|......+.+.+.+. .||+|+||++|.+++.+
T Consensus 208 L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~ 287 (620)
T KOG0350|consen 208 LSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN 287 (620)
T ss_pred HccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC
Confidence 9876 34469999999999999999999999999999999999998888877776643 48999999999999985
Q ss_pred -CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC----------------------------------CCccEEEEE
Q psy4698 183 -GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN----------------------------------NDVQVILLS 227 (258)
Q Consensus 183 -~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~----------------------------------~~~~~i~~S 227 (258)
..+.++.++++||||||+|++..|..++..++..+. +..+.+.+|
T Consensus 288 ~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~s 367 (620)
T KOG0350|consen 288 TKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFS 367 (620)
T ss_pred CCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcc
Confidence 789999999999999999998877776665554431 123578889
Q ss_pred eeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 228 ATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 228 AT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
||++.+-..+...-++.|-...|.+
T Consensus 368 atLsqdP~Kl~~l~l~~Prl~~v~~ 392 (620)
T KOG0350|consen 368 ATLSQDPSKLKDLTLHIPRLFHVSK 392 (620)
T ss_pred hhhhcChHHHhhhhcCCCceEEeec
Confidence 9999888888888889996665543
No 41
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=224.88 Aligned_cols=196 Identities=18% Similarity=0.189 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-----cccceEEEEeccHHHH
Q psy4698 54 LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-----IKECQALILAPTRELA 128 (258)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-----~~~~~~lil~P~~~l~ 128 (258)
+++.+.+.++.. |..||+.|.+|++.+.+|+|+++.+|||||||+++.+|++..+... ..+..+||++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788999999887 8899999999999999999999999999999999999999999877 2346899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--CCCCCccEEEEccchhhhccCc
Q psy4698 129 QQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA--LSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 129 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
+++...++..+...|+.+...+|+....+..+...+.++|+|+||++|.-++.... -.+.+++++||||+|.+.++..
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999888888888889999999999887776532 3578999999999999988877
Q ss_pred HHHHHHHHHhCC---CCccEEEEEeeCChhHHHHHHHhcCCC---eEEEec
Q psy4698 207 KDQIYDVFKHLN---NDVQVILLSATMPADVLDVSMKFMRDP---IKILVK 251 (258)
Q Consensus 207 ~~~~~~~~~~l~---~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~v~~~ 251 (258)
+.++.-.+.++. .+.|.|++|||+. +.....++..... .+|.+.
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~ 216 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVS 216 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcc
Confidence 777765554442 3799999999997 4566666666654 555443
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=2.4e-27 Score=221.76 Aligned_cols=185 Identities=20% Similarity=0.238 Sum_probs=152.9
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
.|+++++++.+.+.+.+.++. ++++|.++++.+..|+++++++|||||||+++.+++++.+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 477899999999999998885 9999999999999999999999999999999999999887653 479999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH
Q psy4698 128 AQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK 207 (258)
Q Consensus 128 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~ 207 (258)
+.|.++.++++. ..+..+....|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.+.+++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998764 356777777776543322 1235799999999999888877667889999999999998877777
Q ss_pred HHHHHHHH---hCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 208 DQIYDVFK---HLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 208 ~~~~~~~~---~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
..+..++. .++++.|+|++|||+++ ..++.+++
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl 189 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN-ANELAQWL 189 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHh
Confidence 66666554 45678999999999975 45566543
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=5.2e-27 Score=223.64 Aligned_cols=178 Identities=17% Similarity=0.244 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc------cccceEEEEeccHHH
Q psy4698 54 LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN------IKECQALILAPTREL 127 (258)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~------~~~~~~lil~P~~~l 127 (258)
+++.+.+.+++ ++..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777665 68899999999999999999999999999999999999999988642 235689999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC--CCCCccEE
Q psy4698 128 AQQIQKVVIA-------L----GDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL--STKQIRMF 193 (258)
Q Consensus 128 ~~q~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~~~l~~l 193 (258)
+.|+++.+.. + +... ++.+....|+.......+.+...++|+|+||+++..++....+ .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 2 2333 6677888888877777667777799999999999877765433 47899999
Q ss_pred EEccchhhhccCcHHHHHHHHHh----CCCCccEEEEEeeCCh
Q psy4698 194 VLDEADEMLSRGFKDQIYDVFKH----LNNDVQVILLSATMPA 232 (258)
Q Consensus 194 VvDE~h~~~~~~~~~~~~~~~~~----l~~~~~~i~~SAT~~~ 232 (258)
|+||+|.+.+..++..+...+.+ .+...|+|++|||+++
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 99999999877666655544433 3367899999999976
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=4.5e-26 Score=211.34 Aligned_cols=184 Identities=23% Similarity=0.272 Sum_probs=148.6
Q ss_pred CCCCCCcHHHHHHhhhhhcCC-cEEEEcccCCCcchHhHHHHHHHhhhccccce-EEEEeccHHHHHHHHHHHHHhcCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQ-ALILAPTRELAQQIQKVVIALGDFM 142 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~-~lil~P~~~l~~q~~~~~~~~~~~~ 142 (258)
.||. |+++|.++++.++.|+ ++++.+|||||||.++.++++. +......++ .++++|+|+|+.|.++.++++++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~-~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLA-VEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcc-ccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4786 9999999999999998 5788899999999976555543 222233344 4557799999999999999988754
Q ss_pred -----------------------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC--------------
Q psy4698 143 -----------------------SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-------------- 185 (258)
Q Consensus 143 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-------------- 185 (258)
++.+..++|+.....++..+..+++|+|+|+ +++.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccch
Confidence 4778889999999889999999999999996 44444443
Q ss_pred --CCCCccEEEEccchhhhccCcHHHHHHHHHhC--CCC---ccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 186 --STKQIRMFVLDEADEMLSRGFKDQIYDVFKHL--NND---VQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 186 --~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l--~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
.++++++||+|||| ++.+|...+..+++.+ ++. .|+++||||++.++.++.+.++.++..+.+....++
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~ 241 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA 241 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccc
Confidence 26789999999999 5788999999999975 332 699999999999999999999988888777665554
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=7.8e-25 Score=206.46 Aligned_cols=185 Identities=19% Similarity=0.287 Sum_probs=138.0
Q ss_pred CcC--CCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 48 NFD--DMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 48 ~~~--~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|. .+++...+...+++ +|+..++++|.++++.++.|+|+++.+|||+|||++|++|++.. ++.+|||+|+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPL 509 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 509 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCH
Confidence 365 46677777777765 79999999999999999999999999999999999999999853 3479999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh------cCCcEEEeChHHHHH---HHhc--CCCCCCCccEE
Q psy4698 125 RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE------AGAQVVVGTPGRVFD---MISR--GALSTKQIRMF 193 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~Tp~~l~~---~l~~--~~~~~~~l~~l 193 (258)
++|+.++...+... ++....+.++.........+. .+++|+|+||+++.. ++.. .......+++|
T Consensus 510 iSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 510 VSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 99999777666553 466666777665544433222 458999999999752 1211 11123458899
Q ss_pred EEccchhhhccC--cHHHHHH--HHHhCCCCccEEEEEeeCChhHHHHHHHhc
Q psy4698 194 VLDEADEMLSRG--FKDQIYD--VFKHLNNDVQVILLSATMPADVLDVSMKFM 242 (258)
Q Consensus 194 VvDE~h~~~~~~--~~~~~~~--~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~ 242 (258)
||||||++++++ |...+.. .++...+..+++++|||++..+++.+...+
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L 638 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQAL 638 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHc
Confidence 999999999886 5555543 244444578899999999998887555443
No 46
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.93 E-value=5.8e-25 Score=207.24 Aligned_cols=191 Identities=19% Similarity=0.292 Sum_probs=153.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHH
Q psy4698 55 SEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV 134 (258)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~ 134 (258)
...+...+.+.|...++.+|.+|+..+.+|+|++|+.+||||||.+|++|+++.+...... ++|++.|+++|++++.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3445778888899999999999999999999999999999999999999999999887554 899999999999999999
Q ss_pred HHHhcCCCC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC----CCCCCccEEEEccchhhhccCcHH
Q psy4698 135 VIALGDFMS--VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA----LSTKQIRMFVLDEADEMLSRGFKD 208 (258)
Q Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~~l~~lVvDE~h~~~~~~~~~ 208 (258)
++++....+ +.+..+.|+.........+.+.++|+++||++|..++.+.. +.++++++||+||+|. +..-++.
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt-YrGv~GS 213 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT-YRGVQGS 213 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee-ccccchh
Confidence 999988776 67777777776665556677889999999999988554422 2356799999999995 4555777
Q ss_pred HHHHHHHhC-------CCCccEEEEEeeCChhHHHHHHHhcCCCeEE
Q psy4698 209 QIYDVFKHL-------NNDVQVILLSATMPADVLDVSMKFMRDPIKI 248 (258)
Q Consensus 209 ~~~~~~~~l-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v 248 (258)
.+.-+++++ +...|+|+.|||+.+.- ++.+.+.+....+
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~ 259 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEV 259 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCccee
Confidence 776666665 35789999999998764 4455555444433
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=3.1e-24 Score=207.96 Aligned_cols=184 Identities=19% Similarity=0.231 Sum_probs=136.9
Q ss_pred HHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 60 RGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 60 ~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
+.+++ .|+ .|+++|..+++.++.|+|++++||||+|||..+ +++...+.. ++.+++|++||++|+.|+++.++.+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 34444 366 899999999999999999999999999999644 444444433 3568999999999999999999999
Q ss_pred cCCCCceEEEEECCcc-----hHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc---------
Q psy4698 139 GDFMSVSCHACIGGTI-----VRDDIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS--------- 203 (258)
Q Consensus 139 ~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~--------- 203 (258)
+...++.+....++.. .......+. .+++|+|+||++|.+.+. .+....+++||+||||++++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 9888877776665543 222333444 358999999999998876 35566799999999999986
Q ss_pred --cCcH-HHHHHHHHhCCC------------------------CccEEEEEeeCChh-HHHHHHHhcCCCeEEEecC
Q psy4698 204 --RGFK-DQIYDVFKHLNN------------------------DVQVILLSATMPAD-VLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 204 --~~~~-~~~~~~~~~l~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~v~~~~ 252 (258)
.+|. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+..
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~ 298 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS 298 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC
Confidence 3553 566666666653 68999999999864 432 2334444444433
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.6e-24 Score=194.77 Aligned_cols=176 Identities=18% Similarity=0.276 Sum_probs=128.9
Q ss_pred HCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 64 AYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 64 ~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.+|+..++++|.++++.+++|+++++.+|||+|||++|++|++.. +..+||++|+++|+.|+...++.++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~g---- 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKASG---- 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHcC----
Confidence 379999999999999999999999999999999999999998752 3479999999999999999887653
Q ss_pred ceEEEEECCcchHHHH---HHH-hcCCcEEEeChHHHHHHH-hcCCC-CCCCccEEEEccchhhhccC--cHHHHHH---
Q psy4698 144 VSCHACIGGTIVRDDI---RKL-EAGAQVVVGTPGRVFDMI-SRGAL-STKQIRMFVLDEADEMLSRG--FKDQIYD--- 212 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~~l~~~l-~~~~~-~~~~l~~lVvDE~h~~~~~~--~~~~~~~--- 212 (258)
+....+.++....+.. ..+ ...++|+++||+.+.... ....+ ...++++|||||||++++++ +...+..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 5555555554433221 222 234899999999875321 00111 46789999999999998775 4444333
Q ss_pred HHHhCCCCccEEEEEeeCChhHHHHHHHh--cCCCeEEEe
Q psy4698 213 VFKHLNNDVQVILLSATMPADVLDVSMKF--MRDPIKILV 250 (258)
Q Consensus 213 ~~~~l~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~v~~ 250 (258)
+...+ ++.+++++|||+++.+...+... +.+|.++..
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~ 194 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT 194 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC
Confidence 33333 57889999999999876655444 346655543
No 49
>KOG0344|consensus
Probab=99.92 E-value=4.9e-25 Score=192.53 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=173.0
Q ss_pred cccccCcCC----CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc-----
Q psy4698 43 DHVAENFDD----MELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI----- 113 (258)
Q Consensus 43 ~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~----- 113 (258)
++...+|.+ +..++.+++.+.+.+|..|++.|.+++|.++++++++.|+|||||||++|.+|++..+....
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 445556665 56789999999999999999999999999999999999999999999999999999986532
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhc--CCCCceEEEEECCcchHH-HHHHHhcCCcEEEeChHHHHHHHhcCC--CCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALG--DFMSVSCHACIGGTIVRD-DIRKLEAGAQVVVGTPGRVFDMISRGA--LSTK 188 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~ 188 (258)
.+.+++|+.|+++|+.|.+..+.++. ...+.............+ ........++|+|+||.++..++..+. +.+.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 35689999999999999999999998 455544443333322111 112223348999999999999998865 7789
Q ss_pred CccEEEEccchhhhcc-CcHHHHHHHHHhCC-CCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 189 QIRMFVLDEADEMLSR-GFKDQIYDVFKHLN-NDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
.+.++|+||+|.+++. .|..++..++.... ++..+-++|||++..+++.++.-+.+++.|.+--.
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~ 354 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR 354 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc
Confidence 9999999999999998 88888888887654 56678899999999999999999999999988443
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=8.6e-24 Score=200.60 Aligned_cols=186 Identities=22% Similarity=0.221 Sum_probs=146.8
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 53 ELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 53 ~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
+.+....+.+.+ ++| .||+.|..+++.+..+ .+.+++|+||||||.+|+.+++..+..+ .+++|++||+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~ 510 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTT 510 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcH
Confidence 445556665654 577 6999999999999875 6899999999999999999999887654 5899999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHH---HHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRD---DIRKLEA-GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
+|+.|.++.++++....++.+..+.+.....+ ....+.. .++|+|+||. ++ ...+.+++++++|+||+|++
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcccCCEEEeeccccc
Confidence 99999999999988877888877777655433 2333444 4899999994 23 34567899999999999984
Q ss_pred hccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 202 LSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
+......++.++.++++++||||+.+.........+.++.+|.+.+
T Consensus 586 -----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p 631 (926)
T TIGR00580 586 -----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPP 631 (926)
T ss_pred -----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCC
Confidence 3344566777788899999999987766666667778888887654
No 51
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.92 E-value=3.2e-23 Score=164.70 Aligned_cols=187 Identities=35% Similarity=0.582 Sum_probs=155.1
Q ss_pred CCCCCCcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.++..++++|.+++..+..+ +++++.++||+|||.++..+++..+.... ..+++|++|+..++.|+...+........
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 46778999999999999998 99999999999999999999888877653 34799999999999999999988775544
Q ss_pred ceEEEEECCcchHHHHHHHhcCC-cEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCcc
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGA-QVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQ 222 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~-~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~ 222 (258)
.......++............+. +++++|++.+.+.+.........++++|+||+|++....+...+..++..+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 162 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQ 162 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccce
Confidence 33344444444344444555555 99999999999998887667778999999999998765788888888888888899
Q ss_pred EEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 223 VILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 223 ~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
++++|||.++........+..+.+.+....
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 999999999999999999999887777654
No 52
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=201.29 Aligned_cols=187 Identities=18% Similarity=0.254 Sum_probs=152.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhh-hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHH
Q psy4698 53 ELSEELLRGIYAYGFEKPSAIQQRAIIPC-VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQI 131 (258)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l-~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~ 131 (258)
.++..+.+.+...++..+++.|+.++... ..++|++|++|||||||+++++.+++.+... +.+++|++|+++|+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 36778888888888888888888888774 4569999999999999999999999998876 35899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 132 QKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
++.++ .....++++....|+...... . ..+++|+|+||+++..++++....+..+++||+||+|.+.+...+..+.
T Consensus 93 ~~~~~-~~~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 93 YEEFS-RLEELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHhh-hHHhcCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 99998 335668999988888765442 2 2348999999999999999887788899999999999887776777777
Q ss_pred HHHHhCC---CCccEEEEEeeCChhHHHHHHHhcCCCe
Q psy4698 212 DVFKHLN---NDVQVILLSATMPADVLDVSMKFMRDPI 246 (258)
Q Consensus 212 ~~~~~l~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 246 (258)
.++.+++ ..+|++++|||+|+- .+++.+.--+++
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~ 205 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV 205 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc
Confidence 7776654 447999999999964 666666544544
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=2.9e-23 Score=200.86 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=145.7
Q ss_pred CHHHHH-HHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 55 SEELLR-GIYAYGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 55 ~~~l~~-~l~~~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
+....+ ....+.| .|++.|.++++.++.+ .+++++|+||+|||.+++.+++..+. .+.+++|++||++|
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eL 661 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLL 661 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHH
Confidence 334444 4445667 8999999999999887 78999999999999999888877654 34689999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 128 AQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK---LE-AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 128 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
+.|+++.+++.....++.+..+.+.....++... +. .+++|+|+||+.+ . ..+.++++++||+||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf-- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF-- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc--
Confidence 9999999998776667777777777665544332 33 3589999999633 2 3456789999999999986
Q ss_pred cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 204 RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
++ .....++.++.++|++++|||+.+...++...++.++.+|.+++.
T Consensus 735 -G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~ 781 (1147)
T PRK10689 735 -GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 (1147)
T ss_pred -ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC
Confidence 22 234556778889999999999888888888889999999987554
No 54
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=7.5e-23 Score=188.87 Aligned_cols=183 Identities=16% Similarity=0.236 Sum_probs=131.3
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH
Q psy4698 55 SEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133 (258)
Q Consensus 55 ~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~ 133 (258)
.....+.|++ +|+..++++|.++++.++.|+++++.+|||+|||++|++|++.. ...+||++|+++|+.|+..
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~ 83 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVD 83 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHH
Confidence 3344445544 79999999999999999999999999999999999999998753 2379999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC--cH
Q psy4698 134 VVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG--FK 207 (258)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~--~~ 207 (258)
.++.++ +......+........ ..+. ...+++++||+++........+...++++|||||||++.+++ |.
T Consensus 84 ~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 84 QLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc
Confidence 887753 4454544544433222 2223 347899999999863222222344578999999999998765 43
Q ss_pred HHH---HHHHHhCCCCccEEEEEeeCChhHHHHHHHh--cCCCeEE
Q psy4698 208 DQI---YDVFKHLNNDVQVILLSATMPADVLDVSMKF--MRDPIKI 248 (258)
Q Consensus 208 ~~~---~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~v 248 (258)
..+ ..+...+ ++.+++++|||.++.....+... +.+|.+.
T Consensus 160 ~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~ 204 (607)
T PRK11057 160 PEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ 204 (607)
T ss_pred HHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE
Confidence 333 3333343 56889999999998876544333 4455544
No 55
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=5.8e-23 Score=189.69 Aligned_cols=172 Identities=18% Similarity=0.267 Sum_probs=129.2
Q ss_pred HHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 61 GIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 61 ~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|++ +|+..++++|.++++.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+...++.++
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 3443 79999999999999999999999999999999999999998742 2369999999999999999888763
Q ss_pred CCCCceEEEEECCcchHHHH---HH-HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC--cHHH---H
Q psy4698 140 DFMSVSCHACIGGTIVRDDI---RK-LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG--FKDQ---I 210 (258)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~--~~~~---~ 210 (258)
+.+..+.++....+.. .. .....+|+++||+++........+...++++|||||||++.+++ |... +
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 5555555555443322 12 23458999999999864333233455689999999999998765 4443 3
Q ss_pred HHHHHhCCCCccEEEEEeeCChhHHHHHHHhcC
Q psy4698 211 YDVFKHLNNDVQVILLSATMPADVLDVSMKFMR 243 (258)
Q Consensus 211 ~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~ 243 (258)
..+...++. .+++++|||.+..+...+...+.
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcC
Confidence 344445544 45999999999988776665553
No 56
>PRK14701 reverse gyrase; Provisional
Probab=99.90 E-value=1.2e-22 Score=201.03 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=139.7
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHH
Q psy4698 56 EELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV 134 (258)
Q Consensus 56 ~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~ 134 (258)
..+.+.+++ .|+ .|+++|..+++.++.|+++++.||||+|||++++++++.... ++.+++|++||++|+.|+++.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHH
Confidence 344556665 788 799999999999999999999999999999976655554322 345899999999999999999
Q ss_pred HHHhcCCC--CceEEEEECCcchHHH---HHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-----
Q psy4698 135 VIALGDFM--SVSCHACIGGTIVRDD---IRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS----- 203 (258)
Q Consensus 135 ~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~----- 203 (258)
++.++... ++.+..++|+...... ...+..+ ++|+|+||+.|.+.+... ...++++||+||||++++
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~kni 219 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNI 219 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccccccc
Confidence 99988765 4556667777665543 3344444 899999999988766542 126799999999999986
Q ss_pred ------cCcHHHHHH----HHH----------------------hCCCCcc-EEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 204 ------RGFKDQIYD----VFK----------------------HLNNDVQ-VILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 204 ------~~~~~~~~~----~~~----------------------~l~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
.+|..++.. +++ .+++..| .+.+|||++.. .+. ..+++++..+.+
T Consensus 220 d~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r-~~~-~~l~~~~l~f~v 297 (1638)
T PRK14701 220 DRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK-GDR-VKLYRELLGFEV 297 (1638)
T ss_pred chhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch-hHH-HHHhhcCeEEEe
Confidence 356665543 322 2344555 56799999863 111 234467777777
Q ss_pred cCCccc
Q psy4698 251 KKEELT 256 (258)
Q Consensus 251 ~~~~~~ 256 (258)
.....+
T Consensus 298 ~~~~~~ 303 (1638)
T PRK14701 298 GSGRSA 303 (1638)
T ss_pred cCCCCC
Confidence 555443
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=2e-22 Score=195.67 Aligned_cols=191 Identities=19% Similarity=0.258 Sum_probs=134.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHH
Q psy4698 56 EELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 135 (258)
....+.+.+.....|+++|..+++.++.|++++++||||+|||. +.+++...+.. .+++++|++||++|+.|+++.+
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHH
Confidence 33445555544458999999999999999999999999999997 54566555443 3568999999999999999999
Q ss_pred HHhcCCCCceEE---EEECCcchHHH---HHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-----
Q psy4698 136 IALGDFMSVSCH---ACIGGTIVRDD---IRKLEA-GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS----- 203 (258)
Q Consensus 136 ~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~----- 203 (258)
+.++...++... .++|+...... ...+.+ +++|+|+||+.|.+.+..- .. +++++|+||||+|++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccH
Confidence 999876665433 45666554432 333444 4899999999998877652 12 899999999999987
Q ss_pred ------cCcHHH-HHHH----------------------HHhCCCCcc--EEEEEee-CChhHHHHHHHhcCCCeEEEec
Q psy4698 204 ------RGFKDQ-IYDV----------------------FKHLNNDVQ--VILLSAT-MPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 204 ------~~~~~~-~~~~----------------------~~~l~~~~~--~i~~SAT-~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
.+|..+ +..+ ++.+++..| ++++||| .|..+.. .++++++.+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 345543 3332 223445555 5678999 5765442 345566666664
Q ss_pred CCcc
Q psy4698 252 KEEL 255 (258)
Q Consensus 252 ~~~~ 255 (258)
+...
T Consensus 296 ~~~~ 299 (1171)
T TIGR01054 296 GGSD 299 (1171)
T ss_pred Cccc
Confidence 4433
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.90 E-value=8.7e-23 Score=178.12 Aligned_cols=191 Identities=19% Similarity=0.230 Sum_probs=156.9
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
....++++++...+.|+..|+..+.|+|..++.+ +++|+|.++.++|+||||++..++-+..+..+++ +.+|++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--eEEEEehhH
Confidence 4678899999999999999999999999999988 8999999999999999999999999998888543 799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI----RKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
+||+|.+..++.-.+.+++.+..-.|....+... ......+||+|+|++.+-.+++.+ ..+.+++.+|+||+|.+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeec
Confidence 9999999999887788888887767665443321 111234899999999988888877 67899999999999988
Q ss_pred hccCcHHHHHHHH---HhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 202 LSRGFKDQIYDVF---KHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 202 ~~~~~~~~~~~~~---~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
-+...+..+.-++ +.+-+..|+|++|||+-+. +.+++.+
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l 392 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKL 392 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHh
Confidence 7656665555544 4455789999999999554 4455554
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=4.2e-22 Score=185.91 Aligned_cols=169 Identities=19% Similarity=0.299 Sum_probs=130.9
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH
Q psy4698 56 EELLRGIY-AYGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA 128 (258)
Q Consensus 56 ~~l~~~l~-~~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~ 128 (258)
..+.+.+. ..+| .||++|.++++.+..+ .+.+++|+||||||++|+++++..+.. +.+++|++||++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 34444443 3456 7999999999999877 379999999999999999999988754 45899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCcchHH---HHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc
Q psy4698 129 QQIQKVVIALGDFMSVSCHACIGGTIVRD---DIRKLEA-GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR 204 (258)
Q Consensus 129 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~ 204 (258)
.|.++.++++....++.+..+.|+....+ ....+.. .++|+||||+.+. ....+++++++|+||+|++.
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEechhhhh--
Confidence 99999999998888899999999876433 3334444 4999999997653 23467899999999999862
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHH
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVS 238 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~ 238 (258)
......+......+++++||||..+....+.
T Consensus 397 ---~~qr~~l~~~~~~~~iL~~SATp~prtl~~~ 427 (681)
T PRK10917 397 ---VEQRLALREKGENPHVLVMTATPIPRTLAMT 427 (681)
T ss_pred ---HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHH
Confidence 2223344444557899999999765544443
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=1e-22 Score=198.77 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=123.9
Q ss_pred EEcccCCCcchHhHHHHHHHhhhc----------cccceEEEEeccHHHHHHHHHHHHHhc------------CCCCceE
Q psy4698 89 AQAQSGTGKTATFSISILQQVDQN----------IKECQALILAPTRELAQQIQKVVIALG------------DFMSVSC 146 (258)
Q Consensus 89 i~~~tGsGKT~~~l~~~l~~l~~~----------~~~~~~lil~P~~~l~~q~~~~~~~~~------------~~~~~~~ 146 (258)
|++|||||||++|.+|++..+... ..+.++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988653 135799999999999999998876411 1346788
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccchhhhccCcHHH----HHHHHHhCCCCc
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEADEMLSRGFKDQ----IYDVFKHLNNDV 221 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h~~~~~~~~~~----~~~~~~~l~~~~ 221 (258)
....|+....+..+.+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..++.. +.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998888777777778999999999999887653 34689999999999999987655544 344444456778
Q ss_pred cEEEEEeeCChhHHHHHHHhcC-CCeEE
Q psy4698 222 QVILLSATMPADVLDVSMKFMR-DPIKI 248 (258)
Q Consensus 222 ~~i~~SAT~~~~~~~~~~~~~~-~~~~v 248 (258)
|+|++|||+++ .+++.+++.. +|+.|
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~I 187 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTV 187 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEE
Confidence 99999999987 4666654443 35554
No 61
>KOG0952|consensus
Probab=99.89 E-value=8.7e-23 Score=187.94 Aligned_cols=170 Identities=21% Similarity=0.352 Sum_probs=133.3
Q ss_pred CCCCCCcHHHHHHhhhhh-cCCcEEEEcccCCCcchHhHHHHHHHhhhc-------cccceEEEEeccHHHHHHHHHHHH
Q psy4698 65 YGFEKPSAIQQRAIIPCV-RGNDVIAQAQSGTGKTATFSISILQQVDQN-------IKECQALILAPTRELAQQIQKVVI 136 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~-~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-------~~~~~~lil~P~~~l~~q~~~~~~ 136 (258)
+++..++.+|.+++|.+- ...|.+||||||||||..+++.+++.+.+. ....+++|++|+++||.+..+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 577889999999999865 557999999999999999999999988752 345689999999999999998887
Q ss_pred HhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC----CCCCccEEEEccchhhhccCcHHHHHH
Q psy4698 137 ALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL----STKQIRMFVLDEADEMLSRGFKDQIYD 212 (258)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----~~~~l~~lVvDE~h~~~~~~~~~~~~~ 212 (258)
+-....++.+..+.|+...... .+ ..++|+|+||++ ++++.+... .++.++++|+||+|.+ ....+..++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~t--ei-~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKT--EI-ADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHH--HH-HhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHH
Confidence 7667778999888888654332 22 238999999999 555554322 3467899999999954 5557777777
Q ss_pred HHHhCC-------CCccEEEEEeeCChhHHHHHHH
Q psy4698 213 VFKHLN-------NDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 213 ~~~~l~-------~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
++.++. ...+++++|||+|+ +++++++
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~f 294 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARF 294 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHH
Confidence 776653 56899999999996 3555543
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=1.3e-21 Score=181.39 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=125.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHH
Q psy4698 58 LLRGIYAYGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQI 131 (258)
Q Consensus 58 l~~~l~~~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~ 131 (258)
+.+.+...+| .|++.|.++++.+..+ .+.+++|+||||||++|+++++..+.. +.+++|++||++|+.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHH
Confidence 3344556677 7999999999999876 258999999999999999999988764 35899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEECCcchHH---HHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH
Q psy4698 132 QKVVIALGDFMSVSCHACIGGTIVRD---DIRKLEA-GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK 207 (258)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~ 207 (258)
++.++++....++.+..+.|+..... ....+.. .++|+|+||+.+.+ .+.+++++++|+||+|++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~--- 372 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE--- 372 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH---
Confidence 99999998888899999988876543 3334443 48999999987642 356789999999999985321
Q ss_pred HHHHHHHHhCC--CCccEEEEEeeCChh
Q psy4698 208 DQIYDVFKHLN--NDVQVILLSATMPAD 233 (258)
Q Consensus 208 ~~~~~~~~~l~--~~~~~i~~SAT~~~~ 233 (258)
+...+..... ..+++++||||..+.
T Consensus 373 -qr~~l~~~~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 373 -QRKKLREKGQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred -HHHHHHHhcccCCCCCEEEEeCCCCcH
Confidence 1122222222 268999999997544
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.88 E-value=5e-22 Score=182.96 Aligned_cols=172 Identities=16% Similarity=0.158 Sum_probs=127.2
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcchH---------hHHHHHHHhhh---ccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKTAT---------FSISILQQVDQ---NIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~---------~l~~~l~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
..+|.++++.+.+|+++++.|+||||||.+ |+++.+..+.. ...+.++++++|+++++.|....+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999998 33444444421 334568999999999999999888765
Q ss_pred cCC---CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHH
Q psy4698 139 GDF---MSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFK 215 (258)
Q Consensus 139 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~ 215 (258)
... .+..+...+|+...... .....+.+|+|+|++.. ...++++++||+||||++...+ ..+..+++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~-~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELI-NTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcchHHh-hcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHH
Confidence 433 34566777888663211 22223579999997521 1357889999999999986553 45555665
Q ss_pred hCC-CCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 216 HLN-NDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 216 ~l~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
.+. +..|+++||||++.+++.+ ..|+.+|..|.+++.
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr 353 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG 353 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC
Confidence 543 3459999999999998877 578999999998754
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=4e-21 Score=165.97 Aligned_cols=182 Identities=16% Similarity=0.178 Sum_probs=151.4
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
+...++.||.......+.+ |++++.|||-|||+++.+.+...+...++ ++|+++||+-|+.|....|+++..-..-.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 3447899999999877776 79999999999999999999888887654 89999999999999999999987554555
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEE
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVIL 225 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~ 225 (258)
+..+.|..... .........+|+|+||+.+.+-+..+.+++.++.++|+||||+-..+..+..+....-...+++.+++
T Consensus 89 i~~ltGev~p~-~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPE-EREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChH-HHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 55666655443 33445566799999999999999999999999999999999999888888888877767778899999
Q ss_pred EEeeCCh---hHHHHHHHhcCCCeEEEec
Q psy4698 226 LSATMPA---DVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 226 ~SAT~~~---~~~~~~~~~~~~~~~v~~~ 251 (258)
+|||.-. .+++.++......++|++.
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE 196 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTE 196 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecC
Confidence 9999744 5777788888889998884
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=6.6e-21 Score=179.27 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=131.0
Q ss_pred HHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHH-HhcCCCCceEEEEE
Q psy4698 72 AIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVI-ALGDFMSVSCHACI 150 (258)
Q Consensus 72 ~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~ 150 (258)
.+-.+.+..+..+.+++++|+||||||+++.+++++... .+++++++.|+++++.|.++.+. .++...+..+....
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 444566777788899999999999999999999998763 34589999999999999999875 45555555554433
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHHhCCCCccEEEEEe
Q psy4698 151 GGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADE-MLSRGFKDQ-IYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 151 ~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~-~~~~~~~~~-~~~~~~~l~~~~~~i~~SA 228 (258)
.... ....+.+|+|+|++.|++++... ..++++++||+||+|+ .++.++... +..+...++++.|+|+|||
T Consensus 82 r~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 82 RGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred cccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 3321 22344789999999999998874 5789999999999995 666555433 3455666788999999999
Q ss_pred eCChhHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 229 TMPADVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 229 T~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
|++.+. +..|+.++.+|.+.+...++
T Consensus 155 Tl~~~~---l~~~l~~~~vI~~~gr~~pV 180 (819)
T TIGR01970 155 TLDGER---LSSLLPDAPVVESEGRSFPV 180 (819)
T ss_pred CCCHHH---HHHHcCCCcEEEecCcceee
Confidence 999753 45677777777776655443
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=3.8e-21 Score=174.03 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=113.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
..|+++|.++++.++.+++.++.+|||+|||+++... ...+... ...++||++|+++|+.|+.+.+++++......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 4899999999999999999999999999999976432 2222222 3348999999999999999999988754444444
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
...++.... .+.+|+|+|++++.+... ..++++++||+||||++... .+..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEe
Confidence 444444221 346899999999875442 24678999999999998643 4556777776678899999
Q ss_pred eeCChh
Q psy4698 228 ATMPAD 233 (258)
Q Consensus 228 AT~~~~ 233 (258)
||++..
T Consensus 257 ATp~~~ 262 (501)
T PHA02558 257 GSLRDG 262 (501)
T ss_pred ccCCCc
Confidence 999754
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.86 E-value=1.8e-20 Score=176.53 Aligned_cols=173 Identities=20% Similarity=0.312 Sum_probs=129.2
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH-hcCCCCceEEEE
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA-LGDFMSVSCHAC 149 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 149 (258)
..+-.+.+.++.+++++++.|+||||||+++.+++++.... ++++++++|+++++.|.++.+.+ ++...+..+...
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 34445666778888999999999999999999999876432 24899999999999999998754 566666666555
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh-hccCc-HHHHHHHHHhCCCCccEEEEE
Q psy4698 150 IGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM-LSRGF-KDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~-~~~~~-~~~~~~~~~~l~~~~~~i~~S 227 (258)
.++... .....+|+|+||+.|++++... ..++++++||+||+|+. ++.++ ...+..+++.++++.|+|+||
T Consensus 84 vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 84 MRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 544321 1234689999999999998864 47899999999999973 33332 233445667788899999999
Q ss_pred eeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 228 ATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 228 AT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
||++.+ .+..|+.++.+|.+.+....
T Consensus 157 ATl~~~---~l~~~~~~~~~I~~~gr~~p 182 (812)
T PRK11664 157 ATLDND---RLQQLLPDAPVIVSEGRSFP 182 (812)
T ss_pred cCCCHH---HHHHhcCCCCEEEecCcccc
Confidence 999865 23567777777777665443
No 68
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.1e-20 Score=177.39 Aligned_cols=177 Identities=23% Similarity=0.288 Sum_probs=145.6
Q ss_pred HCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 64 AYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 64 ~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
..+| .+-++|++++-.+..|.++++++|||+|||++...++...+..+. +++|.+|.++|.+|.++.+........
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3567 899999999999999999999999999999999888877776653 699999999999999988766433222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccE
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQV 223 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~ 223 (258)
-.+..+.|+. .+++++.|+|.|.+.|..++.++...+.++.+||+||+|.|-+...+.-....+-.+|...|+
T Consensus 191 ~~vGL~TGDv-------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDV-------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecce-------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 2234445554 456778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCChhHHHHHHHhc---CCCeEEEecC
Q psy4698 224 ILLSATMPADVLDVSMKFM---RDPIKILVKK 252 (258)
Q Consensus 224 i~~SAT~~~~~~~~~~~~~---~~~~~v~~~~ 252 (258)
|++|||+|+. ++|..|+. ..|..|.+.+
T Consensus 264 v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~ 294 (1041)
T COG4581 264 VFLSATVPNA-EEFAEWIQRVHSQPIHVVSTE 294 (1041)
T ss_pred EEEeCCCCCH-HHHHHHHHhccCCCeEEEeec
Confidence 9999999976 55666654 2455554433
No 69
>PRK13766 Hef nuclease; Provisional
Probab=99.85 E-value=5.8e-20 Score=174.86 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=136.4
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
+...+++||.+++..++.+ ++++++|||+|||+++++++...+. ..+.++||++|+++|+.|+...++.+.......
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 3447899999999888777 8999999999999999988887773 234589999999999999999998876543445
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEE
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVIL 225 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~ 225 (258)
+..+.|+..... ...+..+++|+|+||+.+...+..+.+.+.++++||+||||++.....+..+...+....+.+++++
T Consensus 89 v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~ 167 (773)
T PRK13766 89 IVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLG 167 (773)
T ss_pred EEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEE
Confidence 666666655433 3445556899999999998887777788899999999999998766566666666666666788999
Q ss_pred EEeeCCh---hHHHHHHHhcCCCeE
Q psy4698 226 LSATMPA---DVLDVSMKFMRDPIK 247 (258)
Q Consensus 226 ~SAT~~~---~~~~~~~~~~~~~~~ 247 (258)
+|||... .+...++......+.
T Consensus 168 lTaTP~~~~~~i~~~~~~L~i~~v~ 192 (773)
T PRK13766 168 LTASPGSDEEKIKEVCENLGIEHVE 192 (773)
T ss_pred EEcCCCCCHHHHHHHHHhCCceEEE
Confidence 9999643 344444444333333
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.85 E-value=3.5e-20 Score=161.03 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=117.6
Q ss_pred HHHHHhhhhhcCCc--EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCC----CCceE
Q psy4698 73 IQQRAIIPCVRGND--VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDF----MSVSC 146 (258)
Q Consensus 73 ~Q~~~~~~l~~g~~--~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~ 146 (258)
+|.++++.+.++++ +++++|||||||.+++++++.. +.+++|++|+++|++|+++.++.+... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999998874 7899999999999999998742 236899999999999999998887532 24444
Q ss_pred EEEECCcchH--HH-----------------HH-HHhcCCcEEEeChHHHHHHHhcC----C-C---CCCCccEEEEccc
Q psy4698 147 HACIGGTIVR--DD-----------------IR-KLEAGAQVVVGTPGRVFDMISRG----A-L---STKQIRMFVLDEA 198 (258)
Q Consensus 147 ~~~~~~~~~~--~~-----------------~~-~~~~~~~Ilv~Tp~~l~~~l~~~----~-~---~~~~l~~lVvDE~ 198 (258)
..+.|..... .. .. .....+.|+++||+.+..++... . . .+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 4444432111 00 00 11235788999999987665431 1 1 2478999999999
Q ss_pred hhhhccCc-----HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh--cCCCe
Q psy4698 199 DEMLSRGF-----KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF--MRDPI 246 (258)
Q Consensus 199 h~~~~~~~-----~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~ 246 (258)
|.+..... ......+++......+++++|||++..+.+.++.. +.+++
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~ 209 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKI 209 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCcee
Confidence 98653321 12333444444446799999999999988888765 55554
No 71
>KOG0354|consensus
Probab=99.85 E-value=1.8e-20 Score=170.09 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=131.5
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 67 FEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 67 ~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
...++.||.+.....+ |+|++|++|||+|||+++...+++.+....+ .++++++|++-|+.|+...+..++.. ..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 4479999999998888 9999999999999999998888888777644 69999999999999999767666654 344
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCC-CCCccEEEEccchhhhccCcHHHHH-HHHHhCCCCccEE
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALS-TKQIRMFVLDEADEMLSRGFKDQIY-DVFKHLNNDVQVI 224 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~~~l~~lVvDE~h~~~~~~~~~~~~-~~~~~l~~~~~~i 224 (258)
....++.........+....+|+|+||+.+..-+.++... ++.+.++||||||+-..+.-+..+. ..+..-....|+|
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 4445554443333355666899999999999888775433 5889999999999998887777666 4555544555999
Q ss_pred EEEeeCChhHHHHH
Q psy4698 225 LLSATMPADVLDVS 238 (258)
Q Consensus 225 ~~SAT~~~~~~~~~ 238 (258)
++|||+-++.....
T Consensus 216 gLTASpG~~~~~v~ 229 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQ 229 (746)
T ss_pred EEecCCCccHHHHH
Confidence 99999977655544
No 72
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=3.1e-20 Score=172.45 Aligned_cols=148 Identities=17% Similarity=0.267 Sum_probs=127.2
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE
Q psy4698 50 DDMELSEELLRGIY-----AYGFEKP---SAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL 121 (258)
Q Consensus 50 ~~~~~~~~l~~~l~-----~~~~~~~---~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil 121 (258)
+.+++...+.+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|.+|++..+..+. .++|+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45566667766665 4577777 9999999999999999999999999999999999998876542 48999
Q ss_pred eccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCCCCCC-------CccEE
Q psy4698 122 APTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGALSTK-------QIRMF 193 (258)
Q Consensus 122 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~~-------~l~~l 193 (258)
+|+++||.|..+.+..+....++++.++.|+.....+...+ +++|+|+||++| +++++.+.+.++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999998877665444 589999999999 999998866665 55899
Q ss_pred EEccchhhh
Q psy4698 194 VLDEADEML 202 (258)
Q Consensus 194 VvDE~h~~~ 202 (258)
|+||||+|+
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999886
No 73
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.82 E-value=8.8e-19 Score=131.40 Aligned_cols=144 Identities=39% Similarity=0.555 Sum_probs=111.7
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+++++.++||+|||.+++..+....... ...+++|++|+..++.++...+...... ...+....+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999999988887776652 3458999999999999999988887654 5666666766665555555566
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
..+|+++|++.+.+............+++|+||+|.+....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888776655566789999999999876654444333444456778999999995
No 74
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.82 E-value=9.6e-20 Score=158.80 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=106.3
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcch----------
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIV---------- 155 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------- 155 (258)
++++.+|||||||++++++++..+... .+.+++|++|+++|+.|+++.++.+... .+...++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 479999999999999999999886543 4568999999999999999999886321 22222222210
Q ss_pred --HHHHHHH-h-----cCCcEEEeChHHHHHHHhcCC----CCCC--CccEEEEccchhhhccCcHHHHHHHHHhCC-CC
Q psy4698 156 --RDDIRKL-E-----AGAQVVVGTPGRVFDMISRGA----LSTK--QIRMFVLDEADEMLSRGFKDQIYDVFKHLN-ND 220 (258)
Q Consensus 156 --~~~~~~~-~-----~~~~Ilv~Tp~~l~~~l~~~~----~~~~--~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~-~~ 220 (258)
....... . ...+|+|+||++++..+..+. +.+. ..++||+||+|.+.+.+... +..+++.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 0000000 1 126799999999988766521 1111 23789999999987653333 555555554 47
Q ss_pred ccEEEEEeeCChhHHHHHHHhcCC
Q psy4698 221 VQVILLSATMPADVLDVSMKFMRD 244 (258)
Q Consensus 221 ~~~i~~SAT~~~~~~~~~~~~~~~ 244 (258)
+|+++||||+|+.+.++.+.+...
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~ 179 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYV 179 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCc
Confidence 899999999998888877665443
No 75
>KOG0947|consensus
Probab=99.81 E-value=2.1e-19 Score=164.38 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=136.8
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
..| .+-.+|++|+-++..|.+++|.|+|.+|||+++..++...-. ...|++|.+|-++|.+|.++.++......+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---HMTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---hccceEecchhhhhccchHHHHHHhccccc-
Confidence 445 789999999999999999999999999999999776643322 345899999999999999999988655544
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
.+.|+. .++..+.++|.|.+.|..++.++.--..++.+||+||+|.+-+...+.-...++-.+|+++++|
T Consensus 369 ---LlTGDv-------qinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 369 ---LLTGDV-------QINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ---eeecce-------eeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 445554 4456689999999999999999988889999999999999888888989999999999999999
Q ss_pred EEEeeCChhHHHHHHHh
Q psy4698 225 LLSATMPADVLDVSMKF 241 (258)
Q Consensus 225 ~~SAT~~~~~~~~~~~~ 241 (258)
++|||+|+. .+|+.|-
T Consensus 439 lLSATVPN~-~EFA~WI 454 (1248)
T KOG0947|consen 439 LLSATVPNT-LEFADWI 454 (1248)
T ss_pred EEeccCCCh-HHHHHHh
Confidence 999999986 4566664
No 76
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=9.3e-19 Score=156.92 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=131.0
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
+|+..+++-|.+++..+++|+++++.+|||.||++||.+|++-. .+-+|||+|..+|..++.+.++..+ +
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~G----i 82 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAAG----I 82 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHcC----c
Confidence 68999999999999999999999999999999999999999765 2369999999999999999998875 4
Q ss_pred eEEEEECCcchH---HHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC--cHHHH---HHHHH
Q psy4698 145 SCHACIGGTIVR---DDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG--FKDQI---YDVFK 215 (258)
Q Consensus 145 ~~~~~~~~~~~~---~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~--~~~~~---~~~~~ 215 (258)
....+.+..+.. .....+..+ .++++-+||++..--..+.+.--.+.++||||||+++.|+ |...+ -.+..
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 444444443322 233344444 8999999999754221111224467899999999999986 55444 45566
Q ss_pred hCCCCccEEEEEeeCChhHHHHHHHhc--CCCeEE
Q psy4698 216 HLNNDVQVILLSATMPADVLDVSMKFM--RDPIKI 248 (258)
Q Consensus 216 ~l~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~v 248 (258)
.++ +++++.+|||-+..+++-+...+ ++++++
T Consensus 163 ~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~ 196 (590)
T COG0514 163 GLP-NPPVLALTATATPRVRDDIREQLGLQDANIF 196 (590)
T ss_pred hCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceE
Confidence 665 78899999999999888766644 455343
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.80 E-value=5e-18 Score=158.26 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=116.6
Q ss_pred CCcHHHHHHhhhhhcC---CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 69 KPSAIQQRAIIPCVRG---NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g---~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
.+++.|.++++.+..+ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 789999999999999998877766654 3489999999999999999998753 356
Q ss_pred EEEEECCcchHH---HHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc-----HHHHHHHHHh
Q psy4698 146 CHACIGGTIVRD---DIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF-----KDQIYDVFKH 216 (258)
Q Consensus 146 ~~~~~~~~~~~~---~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~-----~~~~~~~~~~ 216 (258)
+..++++....+ .+..+. +..+|+|+|++.++ ..++++++||+||+|.....+. ...-...++.
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 777777755432 233333 44899999998765 4678999999999997643221 1112233444
Q ss_pred CCCCccEEEEEeeCChhHHHH
Q psy4698 217 LNNDVQVILLSATMPADVLDV 237 (258)
Q Consensus 217 l~~~~~~i~~SAT~~~~~~~~ 237 (258)
...+.+++++|||.+.+....
T Consensus 291 ~~~~~~~il~SATps~~s~~~ 311 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLAN 311 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHH
Confidence 457889999999987554433
No 78
>KOG0349|consensus
Probab=99.79 E-value=6.1e-19 Score=149.78 Aligned_cols=140 Identities=34% Similarity=0.558 Sum_probs=122.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhc---CCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy4698 118 ALILAPTRELAQQIQKVVIALG---DFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFV 194 (258)
Q Consensus 118 ~lil~P~~~l~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lV 194 (258)
++|+-|+++|++|..+.+++|. ++..++...+.|+...+.+...++++.+|+|+||+++.+++..+.+.+..++++|
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlv 368 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLV 368 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEE
Confidence 8999999999999999666654 3445566677888888999999999999999999999999999999999999999
Q ss_pred EccchhhhccCcHHHHHHHHHhCCC------CccEEEEEeeCCh-hHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 195 LDEADEMLSRGFKDQIYDVFKHLNN------DVQVILLSATMPA-DVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 195 vDE~h~~~~~~~~~~~~~~~~~l~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
+||++-++..++...+.++...++. ..|.+..|||+.- +++......|.-|.-|...++++-+
T Consensus 369 lDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 369 LDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred ecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 9999999998899999988888763 5799999999965 7888888899999999988888744
No 79
>KOG0948|consensus
Probab=99.78 E-value=5.9e-19 Score=158.13 Aligned_cols=173 Identities=19% Similarity=0.246 Sum_probs=144.2
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.+-|+|..++.-+-.+.++++.|.|.+|||.++..++...+..+. |+||.+|-++|.+|.++.+..-.+. +..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~D----VGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFKD----VGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhcc----cce
Confidence 678999999998999999999999999999999999988887754 8999999999999999887664433 334
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
..|+. .++..+.++|.|.+.|..++.++.--+..+.|+|+||+|.|-+...+--+..-+-.+|++.+.+++||
T Consensus 202 MTGDV-------TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDV-------TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecce-------eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 44544 45566899999999999999999888999999999999999888888777777778899999999999
Q ss_pred eCChhHHHHHHHhc---CCCeEEEecCCccc
Q psy4698 229 TMPADVLDVSMKFM---RDPIKILVKKEELT 256 (258)
Q Consensus 229 T~~~~~~~~~~~~~---~~~~~v~~~~~~~~ 256 (258)
|+|+. .+|++|-. +.|.+|.-.+.-.|
T Consensus 275 TiPNA-~qFAeWI~~ihkQPcHVVYTdyRPT 304 (1041)
T KOG0948|consen 275 TIPNA-RQFAEWICHIHKQPCHVVYTDYRPT 304 (1041)
T ss_pred cCCCH-HHHHHHHHHHhcCCceEEeecCCCC
Confidence 99976 55776633 37777765555544
No 80
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.78 E-value=3.4e-18 Score=134.73 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=101.9
Q ss_pred CCcHHHHHHhhhhhc-------CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCC
Q psy4698 69 KPSAIQQRAIIPCVR-------GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDF 141 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~-------g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 141 (258)
+++++|.+++..+.. .+++++.+|||||||.+++..+..... ++++++|+..++.|+...+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999998873 588999999999999998755544433 7999999999999999999766543
Q ss_pred CCceEEEE-----------ECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC-----------CCCCCccEEEEccch
Q psy4698 142 MSVSCHAC-----------IGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA-----------LSTKQIRMFVLDEAD 199 (258)
Q Consensus 142 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----------~~~~~l~~lVvDE~h 199 (258)
........ .................+++++|.+.+........ ......++||+||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 22111110 01111112222334457999999999987765321 223467899999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
++..... ...++. .+...+|+||||.++
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S-
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCccC
Confidence 8754432 333444 456779999999763
No 81
>KOG0951|consensus
Probab=99.74 E-value=1.3e-17 Score=156.28 Aligned_cols=180 Identities=22% Similarity=0.372 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhccc--------cceEEEEec
Q psy4698 53 ELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQNIK--------ECQALILAP 123 (258)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~--------~~~~lil~P 123 (258)
.++.+-..++ .|...++++|..+..+.+.+ .|+++|||||+|||-++++.+++.+....+ ..+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3445555555 46667999999999998877 589999999999999999999999866422 348999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCC---CCCccEEEEccchh
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALS---TKQIRMFVLDEADE 200 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~---~~~l~~lVvDE~h~ 200 (258)
.++|++.+...+.+.....++.+....|+...... .+. +.+|+||||+. ++.+.++.-. .+-++++|+||+|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~--qie-eTqVIV~TPEK-~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE--QIE-ETQVIVTTPEK-WDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhh--hhh-cceeEEeccch-hhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 99999999998888888889999888887653322 222 37999999999 5566654322 23578999999995
Q ss_pred hhccCcHHHHHHHHHhC-------CCCccEEEEEeeCCh--hHHHHHH
Q psy4698 201 MLSRGFKDQIYDVFKHL-------NNDVQVILLSATMPA--DVLDVSM 239 (258)
Q Consensus 201 ~~~~~~~~~~~~~~~~l-------~~~~~~i~~SAT~~~--~~~~~~~ 239 (258)
+ ....+..+..+..+. ...++++++|||+|+ ++..|++
T Consensus 449 L-hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~ 495 (1674)
T KOG0951|consen 449 L-HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLR 495 (1674)
T ss_pred c-ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhc
Confidence 4 445676666655543 246899999999997 4454444
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.74 E-value=7.4e-17 Score=155.82 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=111.4
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc----HHHHHHHHHHHHH-hcCCCCce
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT----RELAQQIQKVVIA-LGDFMSVS 145 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~----~~l~~q~~~~~~~-~~~~~~~~ 145 (258)
..+..+.+..+..++.++|+|+||||||+. +|.+-.-...+..+++++..|. ++++.++.+.+.. ++...++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 455566777777788899999999999995 4532221111222345556685 4566666665543 44433332
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccch-hhhccCcHHH-HHHHHHhCCCCccE
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEAD-EMLSRGFKDQ-IYDVFKHLNNDVQV 223 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h-~~~~~~~~~~-~~~~~~~l~~~~~~ 223 (258)
+.. .. ....+++|+|+||+.|++.+.... .++++++||+|||| ++++.++... +..++.. +++.|+
T Consensus 154 vrf--~~--------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKv 221 (1294)
T PRK11131 154 VRF--ND--------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKV 221 (1294)
T ss_pred ecC--cc--------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceE
Confidence 211 00 113458999999999999998765 48999999999999 4677666543 3333322 357899
Q ss_pred EEEEeeCChhHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 224 ILLSATMPADVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 224 i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
|+||||++. +.+.+.|.+.| +|.+++...++
T Consensus 222 ILmSATid~--e~fs~~F~~ap-vI~V~Gr~~pV 252 (1294)
T PRK11131 222 IITSATIDP--ERFSRHFNNAP-IIEVSGRTYPV 252 (1294)
T ss_pred EEeeCCCCH--HHHHHHcCCCC-EEEEcCccccc
Confidence 999999974 56777777666 46776655543
No 83
>KOG0352|consensus
Probab=99.72 E-value=1.4e-16 Score=135.36 Aligned_cols=182 Identities=21% Similarity=0.311 Sum_probs=127.3
Q ss_pred HHHHHHHH-CCCCC-CcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH
Q psy4698 57 ELLRGIYA-YGFEK-PSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133 (258)
Q Consensus 57 ~l~~~l~~-~~~~~-~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~ 133 (258)
.+.+.|++ +|+.+ -++.|..++..+..+ +++.+++|||+||++||.+|.+.. . ..+|+++|..+|+.++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~-gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----G-GITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----C-CeEEEehHHHHHHHHHHH
Confidence 34556665 46554 388999999987665 689999999999999999999764 2 279999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCcchHH------HHHHHhcCCcEEEeChHHHHH----HHhcCCCCCCCccEEEEccchhhhc
Q psy4698 134 VVIALGDFMSVSCHACIGGTIVRD------DIRKLEAGAQVVVGTPGRVFD----MISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ilv~Tp~~l~~----~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
.+.++. +.+..+....+..+ ....-+....+++.||++... -+-++...-.-++++||||||+...
T Consensus 80 HL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 987763 33333333332222 122223447899999997432 2222223334578999999999988
Q ss_pred cC--cHHHHHH---HHHhCCCCccEEEEEeeCChhHHH--HHHHhcCCCeEEE
Q psy4698 204 RG--FKDQIYD---VFKHLNNDVQVILLSATMPADVLD--VSMKFMRDPIKIL 249 (258)
Q Consensus 204 ~~--~~~~~~~---~~~~l~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~v~ 249 (258)
|+ |...+.+ +...+ ++...+.++||-+.++++ +....+++||-+.
T Consensus 156 WGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF 207 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIF 207 (641)
T ss_pred hccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhc
Confidence 75 5555443 33333 567899999999999887 4455677887653
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.72 E-value=8.6e-17 Score=147.79 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=110.7
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|++.|......+..|+ +..++||+|||+++.+|++.....+ .++.|++|+..||.|.+..+..+...+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 355 89999999999998887 9999999999999999996544443 36999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhhc
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~~ 203 (258)
.+.+..++......... ..++|+|+||+.| +++++.+ ...++++.++|+||+|+++-
T Consensus 127 sv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 127 SVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred eEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 99999988775544333 3479999999999 8888776 34678899999999998863
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.70 E-value=2.2e-16 Score=149.17 Aligned_cols=170 Identities=19% Similarity=0.148 Sum_probs=111.2
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCC--Cc
Q psy4698 67 FEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFM--SV 144 (258)
Q Consensus 67 ~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~ 144 (258)
...|+++|..+.........+++.+|||+|||.+++.++...+. .+...+++|..||++++++.+.+++++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~-~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID-QGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34799999988655444567999999999999999877665443 3334589999999999999999987643211 23
Q ss_pred eEEEEECCcchH------------------------HHHHHHhcC---CcEEEeChHHHHHHHhc-CCCCCCC----ccE
Q psy4698 145 SCHACIGGTIVR------------------------DDIRKLEAG---AQVVVGTPGRVFDMISR-GALSTKQ----IRM 192 (258)
Q Consensus 145 ~~~~~~~~~~~~------------------------~~~~~~~~~---~~Ilv~Tp~~l~~~l~~-~~~~~~~----l~~ 192 (258)
.+...+|..... .+....... .+|+|||+++++...-. +...+.. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 445555543211 111101111 68999999998754322 1111111 258
Q ss_pred EEEccchhhhccCcHHHHHHHHHhCC-CCccEEEEEeeCChhHHHHH
Q psy4698 193 FVLDEADEMLSRGFKDQIYDVFKHLN-NDVQVILLSATMPADVLDVS 238 (258)
Q Consensus 193 lVvDE~h~~~~~~~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~~~~ 238 (258)
|||||+|.+ +......+..+++.+. ...++|+||||+|...++.+
T Consensus 443 vIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 443 LIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKL 488 (878)
T ss_pred EEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHH
Confidence 999999965 4434445555555542 35789999999999876543
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=2.7e-16 Score=145.16 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=104.4
Q ss_pred CCcHHHHHHhhhhhc-C--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 69 KPSAIQQRAIIPCVR-G--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~-g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
.+++||.+++..+.. | ++.++++|||+|||++.+..+... +.++||+||+..|+.||.+.+.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 689999999998763 3 478999999999999987655432 2369999999999999999999886444445
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR--------GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
+..+.++.... .....+|+|+|++.+.....+ ..+.-..+++||+||+|++.. .....++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhc
Confidence 55555543221 112368999999876432211 112234678999999998743 3444566666
Q ss_pred CCCccEEEEEeeCCh
Q psy4698 218 NNDVQVILLSATMPA 232 (258)
Q Consensus 218 ~~~~~~i~~SAT~~~ 232 (258)
.. ...+++|||+.+
T Consensus 400 ~a-~~RLGLTATP~R 413 (732)
T TIGR00603 400 QA-HCKLGLTATLVR 413 (732)
T ss_pred Cc-CcEEEEeecCcc
Confidence 43 457999999864
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.70 E-value=1.2e-16 Score=142.49 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=99.1
Q ss_pred CCcHHHHHHhhhhhc----CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCVR----GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~----g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.++++|.+++.++.. ++..++++|||+|||.+++..+... . .+++||||+++|+.||.+.+....... -
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~ 108 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-K-----RSTLVLVPTKELLDQWAEALKKFLLLN-D 108 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-c-----CCEEEEECcHHHHHHHHHHHHHhcCCc-c
Confidence 699999999999888 8889999999999999886555433 1 249999999999999987776654322 1
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
.+..+.++. .. ... ..|.|+|.+.+........+..+.+++||+||+|++....+. .+...+.....++
T Consensus 109 ~~g~~~~~~-~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~~L 177 (442)
T COG1061 109 EIGIYGGGE-KE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYPRL 177 (442)
T ss_pred ccceecCce-ec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhccccee
Confidence 122222222 11 011 369999999887642112233447899999999998554332 2333332222289
Q ss_pred EEEeeCCh
Q psy4698 225 LLSATMPA 232 (258)
Q Consensus 225 ~~SAT~~~ 232 (258)
++|||.++
T Consensus 178 GLTATp~R 185 (442)
T COG1061 178 GLTATPER 185 (442)
T ss_pred eeccCcee
Confidence 99999764
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.70 E-value=1.4e-16 Score=147.09 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=100.2
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .|+++|......+..| .++.++||+|||++|.+|++.....+ ..++|++|++.|+.|..+.+..+....++.
T Consensus 68 gl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 68 GM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 44 5666666665555555 69999999999999999987666543 369999999999999999999999999999
Q ss_pred EEEEECCcc---hHHHHHHHhcCCcEEEeChHHH-HHHHhc------CCCCCCCccEEEEccchhhh
Q psy4698 146 CHACIGGTI---VRDDIRKLEAGAQVVVGTPGRV-FDMISR------GALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 146 ~~~~~~~~~---~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~~~~l~~lVvDE~h~~~ 202 (258)
+....++.. .....+....+++|++|||+.| ++++.. ....+.++.++|+||||+++
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 887665421 2222333345699999999999 566643 23456789999999999985
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.70 E-value=7.8e-16 Score=149.20 Aligned_cols=172 Identities=18% Similarity=0.184 Sum_probs=116.1
Q ss_pred HHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH-hcCCCCceEEEEEC
Q psy4698 73 IQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA-LGDFMSVSCHACIG 151 (258)
Q Consensus 73 ~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
+..+.+..+..+..++|+|+||||||+.....++. ...+..+++++..|.+..+...+..+.+ ++...+-.+.....
T Consensus 71 ~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle--~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR 148 (1283)
T TIGR01967 71 KREDIAEAIAENQVVIIAGETGSGKTTQLPKICLE--LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVR 148 (1283)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH--cCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEc
Confidence 33566677777788999999999999964333322 1112234677788999988888766544 55444444432111
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHHhCCCCccEEEEEee
Q psy4698 152 GTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADE-MLSRGFKDQ-IYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 152 ~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~-~~~~~~~~~-~~~~~~~l~~~~~~i~~SAT 229 (258)
... .....+.|.|+|++.|++.+.... .++++++||+||+|+ .++.++... +..++.. .++.|+|+||||
T Consensus 149 ~~~------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSAT 220 (1283)
T TIGR01967 149 FHD------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSAT 220 (1283)
T ss_pred CCc------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCC
Confidence 111 113457899999999999987764 488999999999994 777666654 4444433 467899999999
Q ss_pred CChhHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 230 MPADVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
++. +.+.+.|.+.| +|.+++...++
T Consensus 221 ld~--~~fa~~F~~ap-vI~V~Gr~~PV 245 (1283)
T TIGR01967 221 IDP--ERFSRHFNNAP-IIEVSGRTYPV 245 (1283)
T ss_pred cCH--HHHHHHhcCCC-EEEECCCcccc
Confidence 974 56777776666 46676655443
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3.1e-16 Score=145.99 Aligned_cols=131 Identities=18% Similarity=0.274 Sum_probs=109.4
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|+++|..+...+.+|+ ++.+.||+|||+++.+|++..... +.++.|++|++.||.|.+..+..+....++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 366 89999999999998887 999999999999999999866664 347999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEEccchhhh
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA------LSTKQIRMFVLDEADEML 202 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~l~~lVvDE~h~~~ 202 (258)
.+.+..++.....+.+. ..+++|+|+||+.+ ++++..+. ..+.++.++|+||+|+++
T Consensus 149 ~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred eEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 99999988773333333 34589999999998 66665432 345789999999999875
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3e-16 Score=146.22 Aligned_cols=129 Identities=20% Similarity=0.303 Sum_probs=110.0
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .++++|...--.+.+|+ +..++||+|||+++.+|++..+..+ ..+.|++|++.||.|.+..+..+...+++.
T Consensus 80 g~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 80 GL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred CC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 44 78999988888888888 8999999999999999999777654 359999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC-CCCC-----CCccEEEEccchhhh
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG-ALST-----KQIRMFVLDEADEML 202 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~~-----~~l~~lVvDE~h~~~ 202 (258)
+.+..++.......... .++|+|+||+.| +++++.+ .+++ ..+.++|+||+|+++
T Consensus 154 v~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 99999887665553333 589999999999 9999876 3444 589999999999885
No 92
>KOG0351|consensus
Probab=99.68 E-value=6e-16 Score=146.22 Aligned_cols=182 Identities=19% Similarity=0.221 Sum_probs=131.2
Q ss_pred HHHHH-HHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHH
Q psy4698 58 LLRGI-YAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVI 136 (258)
Q Consensus 58 l~~~l-~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 136 (258)
....+ ..+|...+++-|.+++...+.|+++++.+|||.||++||.+|++.. ++-+++|.|..+|+.++...+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhh
Confidence 44444 3579999999999999999999999999999999999999998643 2379999999999999988774
Q ss_pred HhcCCCCceEEEEECCcchH---HHHHHHhc---CCcEEEeChHHHHHH--HhcCCCCCCC---ccEEEEccchhhhccC
Q psy4698 137 ALGDFMSVSCHACIGGTIVR---DDIRKLEA---GAQVVVGTPGRVFDM--ISRGALSTKQ---IRMFVLDEADEMLSRG 205 (258)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~Ilv~Tp~~l~~~--l~~~~~~~~~---l~~lVvDE~h~~~~~~ 205 (258)
.. ++....+.++.... .....+.+ .++|++-||+++... +.+....+.. +.++||||||+...|+
T Consensus 326 ~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 KK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred hc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 43 45556666665553 22333443 489999999987542 2222233444 8899999999998874
Q ss_pred --cHH---HHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh--cCCCeEEEe
Q psy4698 206 --FKD---QIYDVFKHLNNDVQVILLSATMPADVLDVSMKF--MRDPIKILV 250 (258)
Q Consensus 206 --~~~---~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~v~~ 250 (258)
|.. .+..+..+.+. ..+|++|||.+..++.-+-.. +.+|++...
T Consensus 402 HdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~ 452 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKS 452 (941)
T ss_pred ccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceecc
Confidence 443 44444555544 789999999988776654443 335555443
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=4.8e-16 Score=141.97 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .|+++|..+++.++.|+ +..+.||+|||+++.+|++..... +.+++|++|+++||.|.+..+..+....++.
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 55 89999999999999999 999999999999999999987654 3579999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC-------------------------CCCCCccEEEEccch
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA-------------------------LSTKQIRMFVLDEAD 199 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-------------------------~~~~~l~~lVvDE~h 199 (258)
+.+..++.... .+....+++|+|+|...+ +++++.+. .-...+.+.||||+|
T Consensus 175 v~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD 252 (656)
T PRK12898 175 VGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD 252 (656)
T ss_pred EEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc
Confidence 99999986543 334456789999999887 55654431 113567899999999
Q ss_pred hhh
Q psy4698 200 EML 202 (258)
Q Consensus 200 ~~~ 202 (258)
.++
T Consensus 253 SiL 255 (656)
T PRK12898 253 SVL 255 (656)
T ss_pred cee
Confidence 764
No 94
>KOG0353|consensus
Probab=99.67 E-value=1.7e-15 Score=127.13 Aligned_cols=181 Identities=20% Similarity=0.278 Sum_probs=132.8
Q ss_pred CCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH
Q psy4698 50 DDMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA 128 (258)
Q Consensus 50 ~~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~ 128 (258)
++++++....+.|++ +.+.+++|.|..++++...|++.++..|||-||++||.+|++-. .+-++++||.++|+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislm 147 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLM 147 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHH
Confidence 578889888888875 67889999999999999999999999999999999999998643 23699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHh---cCCcEEEeChHHHHH---HHhc--CCCCCCCccEEEEcc
Q psy4698 129 QQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLE---AGAQVVVGTPGRVFD---MISR--GALSTKQIRMFVLDE 197 (258)
Q Consensus 129 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~Ilv~Tp~~l~~---~l~~--~~~~~~~l~~lVvDE 197 (258)
+++.-.++.++-.. ..+.......+. -..+. ....+++.||+.+.+ ++.+ ..+....+.+|.+||
T Consensus 148 edqil~lkqlgi~a----s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQLGIDA----SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHHhCcch----hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 99999998886432 222222221111 11122 236899999999864 2221 334556788999999
Q ss_pred chhhhccC--cHHHH--HHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 198 ADEMLSRG--FKDQI--YDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 198 ~h~~~~~~--~~~~~--~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
+|+...|+ |...+ ..++++--+...+|+++||-++++.+-++.
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHH
Confidence 99988774 33333 244555456788999999998887665544
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.2e-15 Score=137.86 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=94.6
Q ss_pred EEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchH---HHHHHHhc
Q psy4698 88 IAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVR---DDIRKLEA 164 (258)
Q Consensus 88 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (258)
++.|+||||||.+|+..+...+.. +.+++|++|+++|+.|+++.+++.. +..+..++++.... ..+..+.+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 468999999999997665555433 3479999999999999999998753 24456666665433 23334443
Q ss_pred -CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-----cH-HHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 165 -GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-----FK-DQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 165 -~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-----~~-~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
.++|+|+|+..++ ..++++++|||||+|+....+ +. ..+ ..++....+.++|++|||.+.+...
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 4799999998765 467899999999999865322 11 223 3333334678999999997754333
No 96
>KOG0920|consensus
Probab=99.64 E-value=6.1e-15 Score=137.75 Aligned_cols=198 Identities=17% Similarity=0.168 Sum_probs=141.7
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH
Q psy4698 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA 128 (258)
Q Consensus 49 ~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~ 128 (258)
+.....++...+.+..+.-...+..+...+.++.+...++|.|.||+|||+.....+++.....+..+++++..|.|-.|
T Consensus 153 ~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsA 232 (924)
T KOG0920|consen 153 QSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISA 232 (924)
T ss_pred hchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHH
Confidence 33334445555555544444568889999999999999999999999999999999999887777788999999999988
Q ss_pred HHHHHHHHH-hcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh-ccCc
Q psy4698 129 QQIQKVVIA-LGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML-SRGF 206 (258)
Q Consensus 129 ~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~-~~~~ 206 (258)
..+++++.. .+...+-.+.. ..+.+..... ...+++||.+.|++.+.. .-.+.+++++|+||+|+-. +.++
T Consensus 233 IsvAeRVa~ER~~~~g~~VGY-----qvrl~~~~s~-~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~Df 305 (924)
T KOG0920|consen 233 ISVAERVAKERGESLGEEVGY-----QVRLESKRSR-ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDF 305 (924)
T ss_pred HHHHHHHHHHhccccCCeeeE-----EEeeecccCC-ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCccc
Confidence 888866543 44434433321 1221211222 268999999999999988 3478899999999999643 3356
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
.-.+.+.+-..+++.++|+||||+. .+.|...|. ..-++.+++.++.
T Consensus 306 lLi~lk~lL~~~p~LkvILMSAT~d--ae~fs~YF~-~~pvi~i~grtfp 352 (924)
T KOG0920|consen 306 LLILLKDLLPRNPDLKVILMSATLD--AELFSDYFG-GCPVITIPGRTFP 352 (924)
T ss_pred HHHHHHHHhhhCCCceEEEeeeecc--hHHHHHHhC-CCceEeecCCCcc
Confidence 6555665555678999999999998 445555555 4445666666554
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.64 E-value=3.1e-15 Score=145.13 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=107.4
Q ss_pred CCcHHHHHHhhhhh----cC-CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 69 KPSAIQQRAIIPCV----RG-NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.++++|.+|+..+. .| +..+++++||||||.+++. ++..+.......++||++|+.+|+.|....++.+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 58999999998765 33 5799999999999998644 444555444456999999999999999999888643222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-----CCCCCCccEEEEccchhhhcc--------------
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-----ALSTKQIRMFVLDEADEMLSR-------------- 204 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~~~~l~~lVvDE~h~~~~~-------------- 204 (258)
..+...++...... .......+|+|+|.+++...+... .+.+..+++||+||||+-...
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111110011 112234789999999987765321 245678899999999985310
Q ss_pred -CcHHHHHHHHHhCCCCccEEEEEeeCChh
Q psy4698 205 -GFKDQIYDVFKHLNNDVQVILLSATMPAD 233 (258)
Q Consensus 205 -~~~~~~~~~~~~l~~~~~~i~~SAT~~~~ 233 (258)
.++..+..++..+ +...|+||||....
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~ 597 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALH 597 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccc
Confidence 1245666777655 35689999998643
No 98
>KOG0950|consensus
Probab=99.62 E-value=1.9e-15 Score=139.27 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=140.3
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCcHHHHHHh--hhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAI--IPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 49 ~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~--~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
+.+.+.+....-..+..|..+++.+|.+++ +.+++++|++...||+.|||+++.+-++..+....+ .++.+.|..+
T Consensus 203 ~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vs 280 (1008)
T KOG0950|consen 203 FAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVS 280 (1008)
T ss_pred hhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceee
Confidence 333333333334445678889999999998 457899999999999999999999888887766543 6999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--CCCCCCCccEEEEccchhhhcc
Q psy4698 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR--GALSTKQIRMFVLDEADEMLSR 204 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~~~~~ 204 (258)
.+......+..+....|+.+..+.|..... .......+.|||.++-..++.. ..-.+..+++|||||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~----~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPE----KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCC----CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 999999999999999999988877654332 1223368999999987665543 1224667899999999999998
Q ss_pred CcHHHHHHHHHhC-----CCCccEEEEEeeCChh--HHHHHH
Q psy4698 205 GFKDQIYDVFKHL-----NNDVQVILLSATMPAD--VLDVSM 239 (258)
Q Consensus 205 ~~~~~~~~~~~~l-----~~~~~~i~~SAT~~~~--~~~~~~ 239 (258)
+.+..+..++..+ ....|+|+||||+|+. +++.++
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~ 398 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD 398 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh
Confidence 8888877766553 2346799999999873 444444
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=2e-14 Score=135.99 Aligned_cols=191 Identities=24% Similarity=0.236 Sum_probs=148.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 51 DMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 51 ~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.++.+......+.....-.-|+-|..|+..+... -|=+|||.-|-|||.+++-++...+..+ .++.+++||
T Consensus 576 af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPT 652 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPT 652 (1139)
T ss_pred CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEccc
Confidence 3445555666665532226799999999998643 3689999999999999999998888765 489999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchh
Q psy4698 125 RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADE 200 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 200 (258)
.-||+|.++.+++...+..+++..++.-.+..++ .+.+.+| .||+|||. +++. +.+.+++++++||||-|+
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~-kdv~FkdLGLlIIDEEqR 727 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLS-KDVKFKDLGLLIIDEEQR 727 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhC-CCcEEecCCeEEEechhh
Confidence 9999999999999888888888877766555444 3344444 89999997 4444 456889999999999998
Q ss_pred hhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCc
Q psy4698 201 MLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (258)
|+-.-+.-++.++.++-++-||||.=+.-.+....-++|-.+|.+++++
T Consensus 728 -----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~ 776 (1139)
T COG1197 728 -----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED 776 (1139)
T ss_pred -----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC
Confidence 4666777888888999999999997555555666778887777776543
No 100
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.61 E-value=2e-14 Score=129.40 Aligned_cols=167 Identities=22% Similarity=0.320 Sum_probs=130.7
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 53 ELSEELLRGI-YAYGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 53 ~~~~~l~~~l-~~~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
+....+.+.+ ....| ++|..|+.++..+... .+=++.|.-|||||++++++++..+.++. ++...+||-
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTE 321 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTE 321 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHH
Confidence 3444545444 44566 8999999999998755 25699999999999999999998887754 799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchH---HHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVR---DDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
-||.|.+..+.++....++.+..+.|..... .....+.+| .+|+|||. .+-.....++++.++|+||=|++
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc
Confidence 9999999999999998899998888876544 334445556 99999996 33445568899999999999984
Q ss_pred hccCcHHHHHHHHHhCCC-CccEEEEEeeC-Chh
Q psy4698 202 LSRGFKDQIYDVFKHLNN-DVQVILLSATM-PAD 233 (258)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~-~~~~i~~SAT~-~~~ 233 (258)
+-.-...++.... .+-.+.||||. |+.
T Consensus 397 -----GV~QR~~L~~KG~~~Ph~LvMTATPIPRT 425 (677)
T COG1200 397 -----GVHQRLALREKGEQNPHVLVMTATPIPRT 425 (677)
T ss_pred -----cHHHHHHHHHhCCCCCcEEEEeCCCchHH
Confidence 5555555555555 57799999995 554
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.57 E-value=4.7e-14 Score=132.04 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=127.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH-hcCCCCceEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA-LGDFMSVSCH 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~ 147 (258)
..+....+.+.++.+...++|.|+||||||+.....+++.-. ..+.++.+.-|.|--|...+.++.+ ++...+-.|.
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 446667777788888899999999999999987777766654 3345788889999888888866654 6655554442
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh-ccCcH-HHHHHHHHhCCCCccEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML-SRGFK-DQIYDVFKHLNNDVQVIL 225 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~-~~~~~-~~~~~~~~~l~~~~~~i~ 225 (258)
...-. +. .......|-+.|.+.|++.+.... .++.+++||+||+|+-. +.++. ..+..++...+++.++|.
T Consensus 128 Y~iRf-----e~-~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRF-----ES-KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEe-----ec-cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 21111 10 123347899999999999998876 48999999999999743 22333 334455666777899999
Q ss_pred EEeeCChhHHHHHHHhcCCCeEEEecCCcccCC
Q psy4698 226 LSATMPADVLDVSMKFMRDPIKILVKKEELTLE 258 (258)
Q Consensus 226 ~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (258)
||||+.. + .+..|+.+.-++.+++..++||
T Consensus 201 mSATld~--~-rfs~~f~~apvi~i~GR~fPVe 230 (845)
T COG1643 201 MSATLDA--E-RFSAYFGNAPVIEIEGRTYPVE 230 (845)
T ss_pred EecccCH--H-HHHHHcCCCCEEEecCCccceE
Confidence 9999984 3 4456667677778887777654
No 102
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=3.9e-14 Score=131.99 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=108.8
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|++.|....-.+.+|+ +..+.||+|||+++.+|++.....+. .+-|++|+..||.|.++.+..+...+++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 355 89999999988888887 89999999999999999974444432 4779999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEEccchhhh
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA------LSTKQIRMFVLDEADEML 202 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~l~~lVvDE~h~~~ 202 (258)
.+.+..++.......... .++|+++|++.| +++++.+. .....+.++||||||+++
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 999999887766554443 489999999999 88887654 236788999999999875
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.5e-13 Score=126.88 Aligned_cols=152 Identities=23% Similarity=0.272 Sum_probs=113.1
Q ss_pred CCcHHHHHHhhhhhcC----CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCVRG----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.++.-|..++..+... +..++.|.||||||.+|+-.+-+.+..+ .++|+++|.++|-.|...+++.... .
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg---~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG---A 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC---C
Confidence 6788999999998665 5699999999999999977666666554 3799999999999999999888442 3
Q ss_pred eEEEEECCc----chHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHHH
Q psy4698 145 SCHACIGGT----IVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-----GFKDQIYDVFK 215 (258)
Q Consensus 145 ~~~~~~~~~----~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-----~~~~~~~~~~~ 215 (258)
.+..++++- ....|.+.......|+|||...++ ..++++++|||||-|.-... .+...-.++++
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 344444443 333444444455999999998877 68899999999999965311 23344445555
Q ss_pred hCCCCccEEEEEeeCChh
Q psy4698 216 HLNNDVQVILLSATMPAD 233 (258)
Q Consensus 216 ~l~~~~~~i~~SAT~~~~ 233 (258)
.-..++++|+-|||.+-+
T Consensus 345 a~~~~~pvvLgSATPSLE 362 (730)
T COG1198 345 AKKENAPVVLGSATPSLE 362 (730)
T ss_pred HHHhCCCEEEecCCCCHH
Confidence 555789999999997744
No 104
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.53 E-value=1.3e-13 Score=128.67 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCcHHHHHHhhhhh----c------CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 69 KPSAIQQRAIIPCV----R------GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~------g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
-++.+|.+++..+. . .+..++.++||||||++++..+...+ ......++||++|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 37889999997753 2 24699999999999999866654444 4445568999999999999999999887
Q ss_pred cCCCCceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHhcC--CCCCCCc-cEEEEccchhhhccCcHHHHHHHH
Q psy4698 139 GDFMSVSCHACIGGTIVRDDIRKLEA-GAQVVVGTPGRVFDMISRG--ALSTKQI-RMFVLDEADEMLSRGFKDQIYDVF 214 (258)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~Tp~~l~~~l~~~--~~~~~~l-~~lVvDE~h~~~~~~~~~~~~~~~ 214 (258)
+.... ....+.......+.. ..+|+|+|.+++...+... .+....- -+||+||||+... ..+...+
T Consensus 317 ~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~~~~~l 386 (667)
T TIGR00348 317 QKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GELAKNL 386 (667)
T ss_pred CCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hHHHHHH
Confidence 63210 111122222223332 3689999999997644321 1111111 2899999998532 2333444
Q ss_pred HhCCCCccEEEEEeeCC
Q psy4698 215 KHLNNDVQVILLSATMP 231 (258)
Q Consensus 215 ~~l~~~~~~i~~SAT~~ 231 (258)
+..-++..++++|||.-
T Consensus 387 ~~~~p~a~~lGfTaTP~ 403 (667)
T TIGR00348 387 KKALKNASFFGFTGTPI 403 (667)
T ss_pred HhhCCCCcEEEEeCCCc
Confidence 33224578999999974
No 105
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.52 E-value=3.4e-13 Score=129.38 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=64.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHhh----hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHH
Q psy4698 55 SEELLRGIYAYGFEKPSAIQQRAII----PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQ 130 (258)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~Q~~~~~----~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q 130 (258)
++...+.+...|+ .+++.|.+.+. .+..++++++.||||+|||++|++|++.... .+.+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHH
Confidence 3466667777788 58999998665 5667899999999999999999999988766 23489999999999999
Q ss_pred HHH-HHHHhc
Q psy4698 131 IQK-VVIALG 139 (258)
Q Consensus 131 ~~~-~~~~~~ 139 (258)
+.. .+..+.
T Consensus 308 l~~~~~~~l~ 317 (850)
T TIGR01407 308 LLEKDIPLLN 317 (850)
T ss_pred HHHHHHHHHH
Confidence 864 444443
No 106
>KOG0922|consensus
Probab=99.50 E-value=4.9e-13 Score=119.66 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=121.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHH-HHhcCCCCceEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVV-IALGDFMSVSCH 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~-~~~~~~~~~~~~ 147 (258)
....+-.+.+..+..++.++|.|+||||||+.....+.+.-.... +++-+..|.|--|...+++. .+.+..+|-.+.
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~--g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS--GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC--CcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 456677788888888999999999999999987666655444332 24888889999888887554 446555554443
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-C-cHHHHHHHHHhCCCCccEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-G-FKDQIYDVFKHLNNDVQVIL 225 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~-~~~~~~~~~~~l~~~~~~i~ 225 (258)
....-.. .-.....|.+.|-+.|++-+..+. .++.++.||+||||+-.-. + ....++++++. +++.++|+
T Consensus 129 Y~IRFed------~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIi 200 (674)
T KOG0922|consen 129 YTIRFED------STSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLII 200 (674)
T ss_pred eEEEecc------cCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEE
Confidence 2211110 011236899999999998776654 6789999999999963211 1 22222333332 45689999
Q ss_pred EEeeCChhHHHHHHHhcCCCeEEEecCCcccCC
Q psy4698 226 LSATMPADVLDVSMKFMRDPIKILVKKEELTLE 258 (258)
Q Consensus 226 ~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (258)
||||+. .+....|+.+..++.+++..+++|
T Consensus 201 mSATld---a~kfS~yF~~a~i~~i~GR~fPVe 230 (674)
T KOG0922|consen 201 MSATLD---AEKFSEYFNNAPILTIPGRTFPVE 230 (674)
T ss_pred Eeeeec---HHHHHHHhcCCceEeecCCCCcee
Confidence 999998 346667777788888888887764
No 107
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.5e-13 Score=128.11 Aligned_cols=130 Identities=19% Similarity=0.256 Sum_probs=107.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .++++|...--.+.+|+ +..++||.|||+++.+|++.....+. .+.|++|+..||.+-.+++..+....+++
T Consensus 80 gm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGls 153 (908)
T PRK13107 80 EM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLT 153 (908)
T ss_pred CC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 44 78899988887777777 89999999999999999987776543 49999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC-CCCC-----CCccEEEEccchhhhc
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG-ALST-----KQIRMFVLDEADEMLS 203 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~~-----~~l~~lVvDE~h~~~~ 203 (258)
+.+..++...... .-.-+++|+++||+.| +++++.+ .+.. ..+.++||||+|.++-
T Consensus 154 v~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 154 VGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred EEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9988877665322 2223589999999999 8888876 3333 6789999999998863
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.1e-12 Score=120.22 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=101.2
Q ss_pred HHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 59 LRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 59 ~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
.+.+++.....|+..|+-....+..|+++-+.||||.|||+-.++.. +.-..++.+++|++||..|+.|.++.++++
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~s---l~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMS---LYLAKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHH---HHHHhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 34445443339999999999999999999999999999998554333 333334469999999999999999999999
Q ss_pred cCCCC-ceEEE-EECCcch---HHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 139 GDFMS-VSCHA-CIGGTIV---RDDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 139 ~~~~~-~~~~~-~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
+...+ ..+.. +++.... ......+.+| .+|+|+|.+-|.+-... +.-.+++++++|++|.++..+
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhcc
Confidence 86655 33322 4444332 3334455554 89999999666544433 112468899999999887543
No 109
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.7e-12 Score=106.81 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=113.2
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+++.|+.+-..+. +.++.++.|-||+|||......+-+.+.+ |.++.+.+|....+.+.+.++++-..+.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~~~~- 172 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFSNCD- 172 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhccCC-
Confidence 68999988876654 55789999999999999864444444433 34899999999999999999988665444
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
+..++|+...... ..++|+|..+|+++-+. ++++|+||+|.+.-........++-+.......+|
T Consensus 173 -I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 173 -IDLLYGDSDSYFR-------APLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred -eeeEecCCchhcc-------ccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 4556666543221 57999999998876554 67999999998754433444445555556677899
Q ss_pred EEEeeCChhHHHHHHH
Q psy4698 225 LLSATMPADVLDVSMK 240 (258)
Q Consensus 225 ~~SAT~~~~~~~~~~~ 240 (258)
++|||.++.+++.+..
T Consensus 238 ylTATp~k~l~r~~~~ 253 (441)
T COG4098 238 YLTATPTKKLERKILK 253 (441)
T ss_pred EEecCChHHHHHHhhh
Confidence 9999999887776644
No 110
>KOG0949|consensus
Probab=99.44 E-value=7.4e-13 Score=122.41 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=111.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE-E
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC-H 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~-~ 147 (258)
.|..+|.+.+..+-.+++.+|++||.+|||.+-...+ +.+.+.....-+|++.|+++|++|....+........+.- .
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 6889999999999999999999999999999875444 4444444445799999999999999876655432221111 1
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc---CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR---GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~---~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
...|.....-. ...-.|+|+|+-|+.+..++-. ...+.+.++++|+||+|.+....-......++-.+ .|.++
T Consensus 590 sl~g~ltqEYs--inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYS--INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhc--CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 12222211111 1112489999999999888865 45577899999999999875544333333344333 48899
Q ss_pred EEEeeCCh
Q psy4698 225 LLSATMPA 232 (258)
Q Consensus 225 ~~SAT~~~ 232 (258)
++|||+-+
T Consensus 666 ~LSATigN 673 (1330)
T KOG0949|consen 666 VLSATIGN 673 (1330)
T ss_pred EEecccCC
Confidence 99999954
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=7.3e-13 Score=121.22 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=114.1
Q ss_pred CCCcHHHHHHhhhhh----cCC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCC
Q psy4698 68 EKPSAIQQRAIIPCV----RGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFM 142 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~----~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 142 (258)
..++.+|..|+..+. .|+ -+++++.||+|||.++ +.++.+|.+.+...|+|+|+-+++|+.|.+..+..+...-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 368999999997754 443 4999999999999987 5667777777677799999999999999998887765432
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-----CCCCCCccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 143 SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-----ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
.. +....+.. ..+.++|.|+|.+.+...+... .+....+++||+||||+- .......++..+
T Consensus 243 ~~-~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYF 309 (875)
T COG4096 243 TK-MNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYF 309 (875)
T ss_pred cc-eeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHH
Confidence 22 11212111 1124799999999998877653 345566899999999964 344444666665
Q ss_pred CCCccEEEEEeeCChhHHHHHHHhc-CCCeEE
Q psy4698 218 NNDVQVILLSATMPADVLDVSMKFM-RDPIKI 248 (258)
Q Consensus 218 ~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~v 248 (258)
..- +++++||....+..-.-.|+ .+|+..
T Consensus 310 dA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~ 339 (875)
T COG4096 310 DAA--TQGLTATPKETIDRSTYGFFNGEPTYA 339 (875)
T ss_pred HHH--HHhhccCcccccccccccccCCCccee
Confidence 322 34559997765444333334 666654
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.42 E-value=1.3e-12 Score=123.32 Aligned_cols=182 Identities=17% Similarity=0.178 Sum_probs=120.8
Q ss_pred CCcHHHHHHhhhhhcC---C-cEEEEcccCCCcchHhHHHHHHHhhh-ccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 69 KPSAIQQRAIIPCVRG---N-DVIAQAQSGTGKTATFSISILQQVDQ-NIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g---~-~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
..++.|..++..+..+ . .+++.+|||+|||.+.+.++...+.. .....|++++.|++++.++.++.++......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 4488999999887655 3 68999999999999999999888877 34566999999999999999999988655443
Q ss_pred ceEEEEECCcchHHHHHH--------------HhcCCcEEEeChHHHHHHHh-cCCCC-CC--CccEEEEccchhhhccC
Q psy4698 144 VSCHACIGGTIVRDDIRK--------------LEAGAQVVVGTPGRVFDMIS-RGALS-TK--QIRMFVLDEADEMLSRG 205 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~--------------~~~~~~Ilv~Tp~~l~~~l~-~~~~~-~~--~l~~lVvDE~h~~~~~~ 205 (258)
......++.......... ......+.++||........ ...+. +. ..+.+|+||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 332212222221110000 00113455556555443211 11111 11 23689999999775553
Q ss_pred cHHHHHHHHHhCC-CCccEEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 206 FKDQIYDVFKHLN-NDVQVILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 206 ~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
....+.+++..+. .+..+|+||||+|...++.+...+.+...+..
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~ 400 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE 400 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceec
Confidence 4455555555543 46789999999999999999888876666654
No 113
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.42 E-value=9e-12 Score=119.56 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=109.5
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+++||.+.+.++. .|.+.|+.-.+|.|||+..+..+.......+....+|||||. ++..+|.+.+++++.. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~--l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPV--L 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCC--C
Confidence 68999999999875 567899999999999998754443322223333479999995 6678899999888743 4
Q ss_pred eEEEEECCcchHHHHHH---HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCc
Q psy4698 145 SCHACIGGTIVRDDIRK---LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDV 221 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~---~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~ 221 (258)
.+..++|....+..... ....++|+|+|++.+...... +.--+.++||+||||++- +........++.+...
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIK--N~~Sklskalr~L~a~- 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIK--NENSLLSKTMRLFSTN- 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccC--CHHHHHHHHHHHhhcC-
Confidence 45555665443322211 123589999999987653321 222346799999999873 3345556666666544
Q ss_pred cEEEEEeeC-ChhHHHHHH
Q psy4698 222 QVILLSATM-PADVLDVSM 239 (258)
Q Consensus 222 ~~i~~SAT~-~~~~~~~~~ 239 (258)
..+++|+|. .+.+.++..
T Consensus 321 ~RLLLTGTPlqNnl~ELws 339 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWA 339 (1033)
T ss_pred cEEEEecCCCCCCHHHHHH
Confidence 467889995 555555443
No 114
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.41 E-value=1.9e-12 Score=109.77 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhcccc---ceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKE---CQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~---~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
.+.+++...+|+|||...+..+. .+....+. ..+||+||. .+..+|...+.++.......+..+.+.........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTS
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccccc
Confidence 35699999999999988765554 33332221 259999999 88899999999988654556666555552222222
Q ss_pred HHhcCCcEEEeChHHHH--------HHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC-C
Q psy4698 161 KLEAGAQVVVGTPGRVF--------DMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM-P 231 (258)
Q Consensus 161 ~~~~~~~Ilv~Tp~~l~--------~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~-~ 231 (258)
......+++|+|++.+. ..+.. -+.++||+||+|.+ .+........+..+. ...++++|||. +
T Consensus 103 ~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~--k~~~s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 103 NQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRL--KNKDSKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp SSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGG--TTTTSHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccceeeecccccccccccccccccccc-----ccceeEEEeccccc--ccccccccccccccc-cceEEeecccccc
Confidence 33345899999999988 12222 23789999999987 333444444455565 56678899995 4
Q ss_pred hhHHH
Q psy4698 232 ADVLD 236 (258)
Q Consensus 232 ~~~~~ 236 (258)
+...+
T Consensus 175 n~~~d 179 (299)
T PF00176_consen 175 NSLED 179 (299)
T ss_dssp SGSHH
T ss_pred ccccc
Confidence 44343
No 115
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.39 E-value=7.1e-12 Score=119.27 Aligned_cols=132 Identities=21% Similarity=0.343 Sum_probs=94.6
Q ss_pred CCCCCCcHHHHHHhhh----hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHH-HHHHHhc
Q psy4698 65 YGFEKPSAIQQRAIIP----CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQ-KVVIALG 139 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~----l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~-~~~~~~~ 139 (258)
.|+ ..|+-|.+.... +..++.+++.|+||+|||++|++|++... .+.+++|++||++|++|.. +.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 455 789999985544 45678899999999999999999988754 2468999999999999994 6677776
Q ss_pred CCCCceEEEEECCcchH-----------------------------------------------HHHHHH----------
Q psy4698 140 DFMSVSCHACIGGTIVR-----------------------------------------------DDIRKL---------- 162 (258)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~---------- 162 (258)
+..++.+..+.|+...- ..|..+
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 66666555544443210 000110
Q ss_pred --------------hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh
Q psy4698 163 --------------EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 163 --------------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~ 202 (258)
...++|+|+...-|+..+..+. .+...+.+||||||++.
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 1125899999988777664443 35778999999999875
No 116
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.39 E-value=4.8e-12 Score=93.84 Aligned_cols=136 Identities=20% Similarity=0.284 Sum_probs=81.5
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|+-.++...+|+|||.-.+.-++...... +.|+|+|.|||.++....+.++.. .+.+.. ..... ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~t---~~~~~----~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFHT---NARMR----TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEES---TTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccCc---eeeec----cc
Confidence 455578999999999998766666555543 348999999999999988877432 333321 11111 22
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC--CCccEEEEEeeCChhH
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN--NDVQVILLSATMPADV 234 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~--~~~~~i~~SAT~~~~~ 234 (258)
..+.-|-+.|...+.+.+.+ .....++++||+||+|.. |.... ...-.+..+. ..+.+|+||||.|...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sI-A~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSI-AARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHH-HHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHH-hhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 34456788888888777665 566789999999999964 33211 1111222221 3468999999998764
No 117
>KOG0925|consensus
Probab=99.38 E-value=4.6e-12 Score=109.69 Aligned_cols=200 Identities=15% Similarity=0.155 Sum_probs=130.9
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.++.|...+.++...+.|+++--...+..+.+.+..+.++.-+++.|.||||||.....+.+....... ..+....|.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQpr 100 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPR 100 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCch
Confidence 377899999999999999987665678888888888888899999999999999998888877766654 357788899
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh-c
Q psy4698 125 RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML-S 203 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~-~ 203 (258)
+.-+.+.+.+... .+++...-..|..-..+.. . .+..-+-+||-+.|++-.... -.+...+.||+||||+-. .
T Consensus 101 rvaamsva~RVad---EMDv~lG~EVGysIrfEdC-~-~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 101 RVAAMSVAQRVAD---EMDVTLGEEVGYSIRFEDC-T-SPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLA 174 (699)
T ss_pred HHHHHHHHHHHHH---Hhccccchhcccccccccc-C-ChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHH
Confidence 8888777654432 2233332222211111110 0 000112234555544433322 246788999999999632 1
Q ss_pred -cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 204 -RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 204 -~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
+-....++.++..- ++.++|.||||+. ....+.|..++-++.|++ .-++
T Consensus 175 TDiLmGllk~v~~~r-pdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg-~~Pv 224 (699)
T KOG0925|consen 175 TDILMGLLKEVVRNR-PDLKLVVMSATLD---AEKFQRYFGNAPLLAVPG-THPV 224 (699)
T ss_pred HHHHHHHHHHHHhhC-CCceEEEeecccc---hHHHHHHhCCCCeeecCC-CCce
Confidence 11223333444443 6899999999987 446777888888888876 4433
No 118
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.38 E-value=8.6e-12 Score=114.40 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=51.9
Q ss_pred HhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 77 AIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 77 ~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
+...+.+++.+++.++||+|||++|++|++..+... .+.+++|++||++|..|+.+.+..+.
T Consensus 9 i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 334456778899999999999999999998877632 23589999999999999999887776
No 119
>KOG0923|consensus
Probab=99.30 E-value=4e-11 Score=107.28 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=121.5
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHH-HHHhcCCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV-VIALGDFMS 143 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~-~~~~~~~~~ 143 (258)
+.....+++-.+.+.++.....++|.|.||||||......+.+.=+.. .+.++-+..|.|..|..++.+ .+.++..++
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk-~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK-GGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc-CCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 344567888899999999999999999999999998766555443333 333588888999988887644 444554444
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHHhCCCCcc
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML-SRGFKDQIYDVFKHLNNDVQ 222 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~-~~~~~~~~~~~~~~l~~~~~ 222 (258)
..|.. +.+.+. ...+..-|=+.|-+.|++-+... ..+..++.+||||||.-. ..+..--+.+-+.+.+++.+
T Consensus 340 ~eVGY-----sIRFEd-cTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 340 HEVGY-----SIRFED-CTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred cccce-----EEEecc-ccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 33321 111110 11123567789999988765543 468899999999999631 12222233344555678999
Q ss_pred EEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 223 VILLSATMPADVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 223 ~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
++++|||+..+ ....|+.+.-+-.+++.-.+|
T Consensus 413 llIsSAT~DAe---kFS~fFDdapIF~iPGRRyPV 444 (902)
T KOG0923|consen 413 LLISSATMDAE---KFSAFFDDAPIFRIPGRRYPV 444 (902)
T ss_pred EEeeccccCHH---HHHHhccCCcEEeccCcccce
Confidence 99999999843 555777776666777665543
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=2e-11 Score=114.20 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=103.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .++++|...--.+.+|+ +..+.||+|||+++.+|++.....+. .+-+++|+..||.+-+..+..+....++.
T Consensus 80 Gm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~lGl~ 153 (913)
T PRK13103 80 GM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFLGLS 153 (913)
T ss_pred CC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhcccCCE
Confidence 54 88999998888888887 89999999999999999987766553 69999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEEccchhhh
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA------LSTKQIRMFVLDEADEML 202 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~l~~lVvDE~h~~~ 202 (258)
+.+..++....+.... .. ++|++||..-+ +++|+.+- .-..++.+.||||+|.++
T Consensus 154 v~~i~~~~~~~err~~-Y~-~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 154 VGIVTPFQPPEEKRAA-YA-ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEECCCCCHHHHHHH-hc-CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9987766554443332 22 89999998876 45555431 123788999999999875
No 121
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.29 E-value=6e-11 Score=100.23 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=56.4
Q ss_pred CCcHHHHH----HhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc---cceEEEEeccHHHHHHHHHHHHHh
Q psy4698 69 KPSAIQQR----AIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK---ECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 69 ~~~~~Q~~----~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
.+++.|.+ +...+..|.++++.+|||+|||++++.|++..+..... +.+++|.++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999 44556678999999999999999999999877655332 248999999999988877666654
No 122
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.29 E-value=6e-11 Score=100.23 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=56.4
Q ss_pred CCcHHHHH----HhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc---cceEEEEeccHHHHHHHHHHHHHh
Q psy4698 69 KPSAIQQR----AIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK---ECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 69 ~~~~~Q~~----~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
.+++.|.+ +...+..|.++++.+|||+|||++++.|++..+..... +.+++|.++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999 44556678999999999999999999999877655332 248999999999988877666654
No 123
>COG4889 Predicted helicase [General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=111.72 Aligned_cols=177 Identities=20% Similarity=0.195 Sum_probs=109.3
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCc----EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGND----VIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~----~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
..|+.+.. .++..++.-..-.+|+++|+.|+++..+|.. -=+.+.+|+|||++.+ -+.+.+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh----hheEeec
Confidence 45555543 3444444445667999999999999887621 2334456999999974 33444443 4899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchH-----------------------HHHH--HHhcCCcEEEeChHHHH
Q psy4698 123 PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVR-----------------------DDIR--KLEAGAQVVVGTPGRVF 177 (258)
Q Consensus 123 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~Ilv~Tp~~l~ 177 (258)
|+++|..|..+.+..-. ...+.....+...... ..+. .-.++--|+++|++++.
T Consensus 214 PSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999999988775532 2233222222221111 1111 11234679999999998
Q ss_pred HHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC-----CccEEEEEeeC
Q psy4698 178 DMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN-----DVQVILLSATM 230 (258)
Q Consensus 178 ~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~-----~~~~i~~SAT~ 230 (258)
..-......+..+++||+||||+...-.....-..-+.+.+. ..+.+.|+||.
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 877766677889999999999986433222222222222221 23567889984
No 124
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.21 E-value=2.3e-10 Score=109.55 Aligned_cols=163 Identities=18% Similarity=0.111 Sum_probs=99.0
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
.|.|||.++...+... ..+++.-.+|.|||+.+.+.+...+..+ ...++||+||. .|..||...+.+.. ++.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 5899999998776543 3689999999999998866655544443 44589999997 89999998886533 2333
Q ss_pred EEEECCcchHHH--HHHHhcCCcEEEeChHHHHHHHh-cCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhCC-CCc
Q psy4698 147 HACIGGTIVRDD--IRKLEAGAQVVVGTPGRVFDMIS-RGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLN-NDV 221 (258)
Q Consensus 147 ~~~~~~~~~~~~--~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~-~~~ 221 (258)
..+.+....... ........+++|++.+.+..--. ...+.-..++++||||||++-.. +........+..+. ...
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 333222211100 00111236899999987653111 01122246789999999998521 11111123333332 334
Q ss_pred cEEEEEeeCCh-hHHH
Q psy4698 222 QVILLSATMPA-DVLD 236 (258)
Q Consensus 222 ~~i~~SAT~~~-~~~~ 236 (258)
.++++|||.-. ..++
T Consensus 307 ~~LLLTATP~q~~~~e 322 (956)
T PRK04914 307 GVLLLTATPEQLGQES 322 (956)
T ss_pred CEEEEEcCcccCCcHH
Confidence 68999999753 4443
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.4e-10 Score=106.47 Aligned_cols=130 Identities=17% Similarity=0.237 Sum_probs=104.0
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|++.|....-.+++|+ ++.+.||+|||+++.+|++.....+. .+-+++|+..||.+-+..+..+...+++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 355 89999999999999987 88999999999999999987776543 6999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~ 202 (258)
.+.+..++....+.. ... .|||.++|...+ +++++.+ ......+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err-~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERR-AAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHH-HHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999887766544333 333 489999998765 3444432 2234568899999999875
No 126
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.19 E-value=4.3e-10 Score=108.85 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=54.0
Q ss_pred CCCCCcHHHHHHhhh----hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH
Q psy4698 66 GFEKPSAIQQRAIIP----CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~----l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~ 133 (258)
|+ .+|+-|.+.... +..++.+++.||||+|||++|++|++...... +.+++|-++|+.|.+|...
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--CCeEEEEcCCHHHHHHHHH
Confidence 55 789999986655 44678899999999999999999998765543 3479999999999999865
No 127
>KOG0385|consensus
Probab=99.18 E-value=6.8e-10 Score=101.00 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=110.2
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+++||.+-++++. .|-+.|+.-.+|-|||+..+..+.......+..+.-+|+||...| ..|.+.+++|+. ++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P--~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTP--SL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCC--Cc
Confidence 68999999999875 456899999999999987743333333323334468999997665 456777888875 46
Q ss_pred eEEEEECCcchHHHH-HHH--hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCc
Q psy4698 145 SCHACIGGTIVRDDI-RKL--EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDV 221 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~--~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~ 221 (258)
.+.+++|....+... +.+ ..+.+|+|+|++..++- ...+.--+.+++||||||++ .+-...+..+++.+....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRi--KN~~s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRI--KNEKSKLSKILREFKTDN 319 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhh--cchhhHHHHHHHHhcccc
Confidence 667778877554332 222 23589999999987643 11112234679999999998 445667778888887666
Q ss_pred cEEEEEee-CChhHHHHH
Q psy4698 222 QVILLSAT-MPADVLDVS 238 (258)
Q Consensus 222 ~~i~~SAT-~~~~~~~~~ 238 (258)
+ +++|.| +-+++.++.
T Consensus 320 r-LLlTGTPLQNNL~ELW 336 (971)
T KOG0385|consen 320 R-LLLTGTPLQNNLHELW 336 (971)
T ss_pred e-eEeeCCcccccHHHHH
Confidence 4 455666 466655544
No 128
>KOG0926|consensus
Probab=99.17 E-value=2.6e-10 Score=104.10 Aligned_cols=173 Identities=23% Similarity=0.253 Sum_probs=110.6
Q ss_pred HHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc---ccceEEEEeccHHHHHHHHHHH-HHhcC-CCCceEEE
Q psy4698 74 QQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI---KECQALILAPTRELAQQIQKVV-IALGD-FMSVSCHA 148 (258)
Q Consensus 74 Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~---~~~~~lil~P~~~l~~q~~~~~-~~~~~-~~~~~~~~ 148 (258)
..+.++++..+.-++|||.||||||+.....+++.=+... .+..+=|..|.|.-+...+++. .+++. ...+....
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 3566777888888999999999999987666655433322 1336677789988877776544 33544 22233333
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHHHhCCC----
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-----GFKDQIYDVFKHLNN---- 219 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-----~~~~~~~~~~~~l~~---- 219 (258)
-+.+ .+.....|.+.|-+.|++-+.+. +-+..++.||+||||.-.-+ |....+..+...+.+
T Consensus 341 Rfd~--------ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDG--------TIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred Eecc--------ccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3333 23344789999999999877764 56788999999999964211 112222222222222
Q ss_pred --CccEEEEEeeCChhHHHHH---HHhcCCCeEEEecCCcccC
Q psy4698 220 --DVQVILLSATMPADVLDVS---MKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 220 --~~~~i~~SAT~~~~~~~~~---~~~~~~~~~v~~~~~~~~~ 257 (258)
..++|+||||+. +.+|. +.|-.-|-+|.|+-..++|
T Consensus 412 ~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPV 452 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPV 452 (1172)
T ss_pred cCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCce
Confidence 468999999985 44444 3355566677777666543
No 129
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=3.1e-10 Score=105.83 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=103.8
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|++.|....-.+.+|+ +..+.||+|||+++.+|++.....+. .+-+++|+.-||.+-+..+..+...+++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 355 89999999988888888 99999999999999999988777654 6999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~ 202 (258)
.+.+..++....... .. -.|||.++|...+ +++++.+ ..-...+.+.||||+|.++
T Consensus 151 ~vg~i~~~~~~~~r~-~~-y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 151 TVGLNLNSMSPDEKR-AA-YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred eEEEeCCCCCHHHHH-HH-hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 998887765544432 22 3479999998876 3455442 1123567899999999875
No 130
>KOG0924|consensus
Probab=99.11 E-value=3.3e-09 Score=95.63 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=110.0
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH-hcCCCCc
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA-LGDFMSV 144 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~ 144 (258)
.+...+..+.+.+..+..++.++|.|.||||||......+++.=+. ..+.+-+..|.|.-|...++...+ ++..++-
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 3445677888888888888999999999999999864444333222 223555666999988888766544 5333332
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-C-cHHHHHHHHHhCCCCcc
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-G-FKDQIYDVFKHLNNDVQ 222 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~-~~~~~~~~~~~l~~~~~ 222 (258)
.+... .+.+--. ....-|-+.|-+.|++-.-.. -.+..++.||+||||.-.-+ + ....+..++++ +.+.+
T Consensus 431 ~VGYs-----IRFEdvT-~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 431 TVGYS-----IRFEDVT-SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred ccceE-----EEeeecC-CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccce
Confidence 22111 1100000 122568889999887643322 24678899999999974322 1 11222223332 45789
Q ss_pred EEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccC
Q psy4698 223 VILLSATMPADVLDVSMKFMRDPIKILVKKEELTL 257 (258)
Q Consensus 223 ~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (258)
+|.+||||. .+.|...|.++|.+ .+++.+++|
T Consensus 503 liVtSATm~--a~kf~nfFgn~p~f-~IpGRTyPV 534 (1042)
T KOG0924|consen 503 LIVTSATMD--AQKFSNFFGNCPQF-TIPGRTYPV 534 (1042)
T ss_pred EEEeecccc--HHHHHHHhCCCcee-eecCCccce
Confidence 999999997 56677666656654 455555544
No 131
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.09 E-value=2.1e-09 Score=88.95 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=96.6
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|+ .|++.|..+.-.+..|+ ++...||-|||++..++++-....+ ..+=|++.+..|+..-+..+..+....++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G---~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG---KGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS---S-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc---CCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 455 89999999998887777 9999999999999888776666654 36889999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHhcCC------CCCCCccEEEEccchhhh
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVF-DMISRGA------LSTKQIRMFVLDEADEML 202 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~~------~~~~~l~~lVvDE~h~~~ 202 (258)
.+....++.......... .++|+++|...+. ++++.+. .....+.++||||+|.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999888877654433322 2689999998874 4554321 124678899999999875
No 132
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.09 E-value=1.4e-09 Score=103.25 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=106.5
Q ss_pred HHHHHHCCCCCCcHHHHHHhhhhhc--------CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHH
Q psy4698 59 LRGIYAYGFEKPSAIQQRAIIPCVR--------GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQ 130 (258)
Q Consensus 59 ~~~l~~~~~~~~~~~Q~~~~~~l~~--------g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q 130 (258)
.+.+++..-..-+.+|.+|++.+.. |.-++=.|.||+|||++= .-++..+.....++|..|..-.|+|--|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceecc
Confidence 3445444444568899999988753 334677899999999985 3444556666677788888888877777
Q ss_pred HHHHHHHhcCCCCceEEEEECCcchHHHH-------------------------------------------HHHh----
Q psy4698 131 IQKVVIALGDFMSVSCHACIGGTIVRDDI-------------------------------------------RKLE---- 163 (258)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~---- 163 (258)
.-+.+++.....+-...++.|+....+.. ..+.
T Consensus 477 TGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 477 TGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred chHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 66666554332222233333332211100 0000
Q ss_pred ----cCCcEEEeChHHHHHHHh--cCCCC---CCC--ccEEEEccchhhhccCcHHHHHHHHHhCC-CCccEEEEEeeCC
Q psy4698 164 ----AGAQVVVGTPGRVFDMIS--RGALS---TKQ--IRMFVLDEADEMLSRGFKDQIYDVFKHLN-NDVQVILLSATMP 231 (258)
Q Consensus 164 ----~~~~Ilv~Tp~~l~~~l~--~~~~~---~~~--l~~lVvDE~h~~~~~~~~~~~~~~~~~l~-~~~~~i~~SAT~~ 231 (258)
-...++|||+++++.... ++... +-. =+.||+||+|.+ +......+.+++.-.. -..++++||||+|
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 015799999999987762 21111 112 258999999964 3333344444444221 3578999999999
Q ss_pred hhHHH
Q psy4698 232 ADVLD 236 (258)
Q Consensus 232 ~~~~~ 236 (258)
..+.+
T Consensus 636 ~~l~~ 640 (1110)
T TIGR02562 636 PALVK 640 (1110)
T ss_pred HHHHH
Confidence 97655
No 133
>KOG0387|consensus
Probab=99.07 E-value=2.5e-09 Score=97.67 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=105.1
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.+++||++.+.++- ++..-|+.-.+|-|||+..+ ..+..+... .-...+||||| ..+..||.+.+..+...
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~p~-- 280 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWWPP-- 280 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhCcc--
Confidence 57899999998863 45668999999999997653 222333322 22357999999 57888999999888654
Q ss_pred ceEEEEECCcch--------HHHHH-----HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHH
Q psy4698 144 VSCHACIGGTIV--------RDDIR-----KLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQI 210 (258)
Q Consensus 144 ~~~~~~~~~~~~--------~~~~~-----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~ 210 (258)
+.+..+++.... ...+. ....+..|+|+|++.+. +....+.-...+++|+||.|++-+ -..++
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrN--pns~i 356 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRN--PNSKI 356 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccC--CccHH
Confidence 455555554431 11111 11223579999997754 122222233457999999998833 34555
Q ss_pred HHHHHhCCCCccEEEEEee-CChhHHHHHHHh
Q psy4698 211 YDVFKHLNNDVQVILLSAT-MPADVLDVSMKF 241 (258)
Q Consensus 211 ~~~~~~l~~~~~~i~~SAT-~~~~~~~~~~~~ 241 (258)
......++... .|++|.| +-+++.++...|
T Consensus 357 slackki~T~~-RiILSGTPiQNnL~ELwsLf 387 (923)
T KOG0387|consen 357 SLACKKIRTVH-RIILSGTPIQNNLTELWSLF 387 (923)
T ss_pred HHHHHhccccc-eEEeeCccccchHHHHHHHh
Confidence 56666665544 4555666 577777777654
No 134
>KOG1123|consensus
Probab=99.06 E-value=1.4e-10 Score=101.04 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCcHHHHHHhhhhhcC---CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 69 KPSAIQQRAIIPCVRG---NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g---~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
.++|||..++.....+ ++-+|+.|.|+|||++-+.+++. -+.++|++|.+-..+.||...++.+.---+-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 5699999999887644 57899999999999987655432 12379999999999999999998886443333
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR--------GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
+..+...... ....+++|+|+|+..+..--++ ..+.-...+++++||+|.+...-| .+++...
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF----RRVlsiv 446 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF----RRVLSIV 446 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH----HHHHHHH
Confidence 4333333221 2345689999999765421111 012234578999999997743322 2333333
Q ss_pred CCCccEEEEEeeCCh
Q psy4698 218 NNDVQVILLSATMPA 232 (258)
Q Consensus 218 ~~~~~~i~~SAT~~~ 232 (258)
...| .++++||+=+
T Consensus 447 ~aHc-KLGLTATLvR 460 (776)
T KOG1123|consen 447 QAHC-KLGLTATLVR 460 (776)
T ss_pred HHHh-hccceeEEee
Confidence 3344 6799999854
No 135
>KOG0390|consensus
Probab=99.05 E-value=6.4e-09 Score=96.45 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=114.9
Q ss_pred CCcHHHHHHhhhhhc---C-------CcEEEEcccCCCcchHhHHHHHHHhhhcccc-----ceEEEEeccHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVR---G-------NDVIAQAQSGTGKTATFSISILQQVDQNIKE-----CQALILAPTRELAQQIQK 133 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~---g-------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~-----~~~lil~P~~~l~~q~~~ 133 (258)
.++|+|++.+.-+-. | ..+++.-.+|+|||+..+ +++..+.....+ .++||++| ..|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHhCcCccccccccEEEcc-HHHHHHHHH
Confidence 579999999977532 2 248888899999998864 444445444444 58999999 578888999
Q ss_pred HHHHhcCCCCceEEEEECCcch-HHHHHHHh------cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 134 VVIALGDFMSVSCHACIGGTIV-RDDIRKLE------AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
.+.++.....+....+++.... ......+. -..-|++.+.+.+.+.... +....++++|+||.|++ .+-
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl--kN~ 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL--KNS 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc--cch
Confidence 8888765545555555555543 11111111 1246788889888766554 44567889999999987 334
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeC-ChhHHHHHHHh-cCCCeEE
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATM-PADVLDVSMKF-MRDPIKI 248 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~-~~~~~~~~~~~-~~~~~~v 248 (258)
...+...+..+. -.+.|++|.|+ -+++.++.+.. +-+|.++
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~L 434 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFL 434 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhc
Confidence 555566666663 45678889996 66676665542 3345444
No 136
>KOG0951|consensus
Probab=99.05 E-value=4.1e-10 Score=106.91 Aligned_cols=152 Identities=20% Similarity=0.324 Sum_probs=111.7
Q ss_pred CCcHHHHHHhhhhhc-CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH-hcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVR-GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA-LGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~-g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~ 146 (258)
..+++|.++++.+-+ ++++++.+|+|||||.++-++++. .....+++++.|..+.+..++..+.+ +....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 448899999988654 467999999999999999888876 23345899999999999888876654 666777777
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH------HHHHHHHHhCCCC
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK------DQIYDVFKHLNND 220 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~------~~~~~~~~~l~~~ 220 (258)
..+.|....... . ....+|+|+||++. +.++ ....+++.|+||+|.+.+. .+ ..+..+-..+.++
T Consensus 1219 ~~l~ge~s~~lk--l-~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK--L-LQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchH--H-hhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHhh
Confidence 776666554433 2 23358999999994 4443 5678899999999977522 11 1244455556678
Q ss_pred ccEEEEEeeCChh
Q psy4698 221 VQVILLSATMPAD 233 (258)
Q Consensus 221 ~~~i~~SAT~~~~ 233 (258)
.+++++|..+.+.
T Consensus 1290 ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1290 IRVVALSSSLANA 1302 (1674)
T ss_pred eeEEEeehhhccc
Confidence 8999999888653
No 137
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.03 E-value=1.2e-09 Score=101.47 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=95.5
Q ss_pred EEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchH---HHHHHHhc
Q psy4698 88 IAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVR---DDIRKLEA 164 (258)
Q Consensus 88 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (258)
+..+.+|||||.+|+-.+-..+..+ .++|+++|.+.+..|....++..... ..+..++++.+.. ..+..+..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhC
Confidence 3344469999999976665555543 36999999999999999999876531 3455566554433 34444555
Q ss_pred C-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-C----cHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 165 G-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-G----FKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 165 ~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~----~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
| .+|+|||...++ ..++++++|||||-|.-... . +...-..+++.-..++.+|+.|||.+-+...
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 5 899999998877 68899999999999964321 1 2223233444444678999999998865443
No 138
>KOG0384|consensus
Probab=99.02 E-value=8.5e-10 Score=104.64 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=126.6
Q ss_pred cccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhc
Q psy4698 37 LIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQN 112 (258)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~ 112 (258)
-....+.++...|..+...+..+. | ..+++||.+-+++++ .+.++|+.-.+|-|||+..+..+-......
T Consensus 344 ~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~ 417 (1373)
T KOG0384|consen 344 NKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL 417 (1373)
T ss_pred CCccccCccchhHHHhhcCccccc-----c-chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh
Confidence 344455566666777766655443 3 589999999999876 457899999999999976543332222222
Q ss_pred cccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh----c-----CCcEEEeChHHHHHHHhcC
Q psy4698 113 IKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE----A-----GAQVVVGTPGRVFDMISRG 183 (258)
Q Consensus 113 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~Ilv~Tp~~l~~~l~~~ 183 (258)
...+-.||++|...+ ..|.+.+..+. ++++.+++|....++..+... . ..+++++|++.++.--.
T Consensus 418 ~~~gpflvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~-- 491 (1373)
T KOG0384|consen 418 QIHGPFLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA-- 491 (1373)
T ss_pred hccCCeEEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--
Confidence 233468999996554 44555565555 678888999887776655543 1 37899999988763221
Q ss_pred CCCCC--CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 184 ALSTK--QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 184 ~~~~~--~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
.++ ...+++|||||++ .+....+...+..+.-+.+++++.-.+-+.++++...
T Consensus 492 --~L~~i~w~~~~vDeahrL--kN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sL 546 (1373)
T KOG0384|consen 492 --ELSKIPWRYLLVDEAHRL--KNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSL 546 (1373)
T ss_pred --hhccCCcceeeecHHhhc--CchHHHHHHHHHHhcccceeeecCCCccccHHHHHHH
Confidence 222 3468999999998 4456667777777777776666555567778877643
No 139
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.02 E-value=6.6e-09 Score=98.67 Aligned_cols=143 Identities=14% Similarity=0.250 Sum_probs=86.2
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHH---------HhcCCCCceEEEEECCc--
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVI---------ALGDFMSVSCHACIGGT-- 153 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~---------~~~~~~~~~~~~~~~~~-- 153 (258)
.++.+.++||+|||.+|+-.++...... +..+.||+||+.++.....+.+. .......+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4799999999999999988877654443 34589999999988766654443 22222234444444332
Q ss_pred -----chHHHHHHH-------hcCCcEEEeChHHHHHHHh-c--------CC--CCCCCc----cEEEEccchhhhccCc
Q psy4698 154 -----IVRDDIRKL-------EAGAQVVVGTPGRVFDMIS-R--------GA--LSTKQI----RMFVLDEADEMLSRGF 206 (258)
Q Consensus 154 -----~~~~~~~~~-------~~~~~Ilv~Tp~~l~~~l~-~--------~~--~~~~~l----~~lVvDE~h~~~~~~~ 206 (258)
......... .+...|+|.|.+.|..-.. + +. ..+..+ -+||+||+|++-..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 001111111 1147899999988764211 0 00 111111 28999999998432
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
.... .-+..+++.+ ++.+|||.+.
T Consensus 217 ~k~~-~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFY-QAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHH-HHHHhcCccc-EEEEeeecCC
Confidence 2222 4446776655 6679999986
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.00 E-value=5.6e-09 Score=98.29 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=52.4
Q ss_pred CCCCCcHHHHHHhhhhh----c-----CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHH
Q psy4698 66 GFEKPSAIQQRAIIPCV----R-----GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQ 132 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~----~-----g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~ 132 (258)
|| ..|+-|.+....+. . ++.++|.||||+|||++|++|++......+ .+++|-+.|++|-+|..
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~--k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK--KKLVISTATVALQEQLV 95 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 55 78999998766543 3 367999999999999999999987665443 47999999999999985
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.99 E-value=2.6e-09 Score=99.91 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=99.6
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|++.|....-.+..|+ ++.+.||.|||+++.+|++-....+ ..+-|++++..||.+-+.++..+...+++
T Consensus 73 lG~-r~ydvQlig~l~L~~G~--IaEm~TGEGKTL~a~l~ayl~aL~G---~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLNDGK--IAEMKTGEGKTLVATLPAYLNALTG---KGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhhHhhcCCc--cccccCCCCchHHHHHHHHHHHhcC---CceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 355 78999998887776665 9999999999999999886544433 36999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~ 202 (258)
.+.+..++....+... .-.|||.++|...+ +++++.+ ......+.+.||||+|.++
T Consensus 147 svg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9988766655544322 23379999998755 3444432 1234568899999999875
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=4.5e-09 Score=98.37 Aligned_cols=129 Identities=17% Similarity=0.233 Sum_probs=102.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .|+++|...--.+.+|+ +..+.||.|||+++.+|++.....+. .+-|++++..||..-+.++..+....++.
T Consensus 83 G~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred CC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 55 78999998888888887 89999999999999999887666553 59999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhc------CCCCCCCccEEEEccchhhh
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISR------GALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~~~~l~~lVvDE~h~~~ 202 (258)
+.+..++....+. ...-.|||++||...+ +++|+. .......+.+.||||+|.++
T Consensus 157 vg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9887665544333 3334589999999887 334332 22334678899999999875
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=2.5e-08 Score=94.30 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=60.7
Q ss_pred CCCCCcHHHHHHhhh----hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 66 GFEKPSAIQQRAIIP----CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~----l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
-|..+++.|.+.+.. +..|+++++.+|||+|||++.+.+++..........+++|.+.|.+-..|..+.+++.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 455669999887765 4577899999999999999999999987765544468999999999999998888874
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.87 E-value=2.2e-08 Score=96.97 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=94.4
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+..+|.--+|||||++....+-..+.. ...+.++||+-++.|-.|..+.+..++....... ...+..+..+.+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 458999999999999976555444444 5667999999999999999999988875433222 33444555555554
Q ss_pred C-CcEEEeChHHHHHHHhcC-C--CCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 165 G-AQVVVGTPGRVFDMISRG-A--LSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 165 ~-~~Ilv~Tp~~l~~~l~~~-~--~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
+ ..|+|+|.++|-...... . ..-+++ .||+||||+- .++..-..+-..+ ++...+++|+|.
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTP 413 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTP 413 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCc
Confidence 4 489999999998877654 1 122333 7999999973 2333333333334 447899999995
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.87 E-value=2.6e-08 Score=79.36 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=76.7
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHH---H-HHhcCCCC
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV---V-IALGDFMS 143 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~---~-~~~~~~~~ 143 (258)
...+..|..++.++...+-+++.||.|+|||+.++..+++.+.. +...+++|+-|..+..++.-.. + .++..+..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 35688999999999988889999999999999999999988877 4445888888876532221100 0 00000000
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccE
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQV 223 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~ 223 (258)
- +.-.............+.....|-+..+.. ++.. .+++ .+||+|||+.+ ...++..++.++..++++
T Consensus 82 p-~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~----iRGr--t~~~-~~iIvDEaQN~----t~~~~k~ilTR~g~~ski 149 (205)
T PF02562_consen 82 P-IYDALEELFGKEKLEELIQNGKIEIEPLAF----IRGR--TFDN-AFIIVDEAQNL----TPEELKMILTRIGEGSKI 149 (205)
T ss_dssp H-HHHHHTTTS-TTCHHHHHHTTSEEEEEGGG----GTT----B-S-EEEEE-SGGG------HHHHHHHHTTB-TT-EE
T ss_pred H-HHHHHHHHhChHhHHHHhhcCeEEEEehhh----hcCc--cccc-eEEEEecccCC----CHHHHHHHHcccCCCcEE
Confidence 0 000000000001111222223455555422 2221 2222 69999999976 577889999999999999
Q ss_pred EEEEee
Q psy4698 224 ILLSAT 229 (258)
Q Consensus 224 i~~SAT 229 (258)
|++.-.
T Consensus 150 i~~GD~ 155 (205)
T PF02562_consen 150 IITGDP 155 (205)
T ss_dssp EEEE--
T ss_pred EEecCc
Confidence 988654
No 146
>KOG0921|consensus
Probab=98.84 E-value=2.5e-08 Score=92.33 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=139.8
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCcccCcccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC
Q psy4698 5 RGDNWEDPKNGPAENEAEQPAYNGPPGMAVDGLIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG 84 (258)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g 84 (258)
+-.+|.+|.-.+....+..-.+..........+-.+.+.+. .....+.....+....-...-.+-...+.++...
T Consensus 319 s~i~wapP~anwn~w~A~nide~~la~~~~~s~~q~~~~~~-----~~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn 393 (1282)
T KOG0921|consen 319 SNISWAPPLQNWNPWRASNIDEEPLAFMSMESISQRIMEKE-----RFKRDEALDKITAQREELPVAQYRSEILQAVAEN 393 (1282)
T ss_pred CCCCCCCccccccccccccCcccccccccccCcccchhhhh-----hhhcccchhhhhhhhhhCcHHHHHHHHHHHHhcC
Confidence 44588888888887777666444443111111111111111 1112223333333333334445556677777788
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhcccc--ceEEEEeccHHHHHHHHHHHHH-hcCCCCceEEEEECCcchHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKE--CQALILAPTRELAQQIQKVVIA-LGDFMSVSCHACIGGTIVRDDIRK 161 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~--~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
+.++|.+.||.|||..+...+++.+..+..+ ..+.+-.|++..+..+.+.+.+ .+...+-.| +++.+.....
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv-----gy~vRf~Sa~ 468 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC-----GYNVRFDSAT 468 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc-----cccccccccc
Confidence 8899999999999999999999988776443 3466677888877776654422 222211111 1111111111
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 162 LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML-SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 162 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
...--.|++||-+-+++++... +..+.++++||+|+.. +..|...+.+-+...-++..+++||||+..+ ++..
T Consensus 469 prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd---~f~~ 542 (1282)
T KOG0921|consen 469 PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTD---LFTN 542 (1282)
T ss_pred cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchh---hhhh
Confidence 1122469999999999988874 4567899999999753 2245555555555556778889999999865 5555
Q ss_pred hcCCCeEEEecCCcc
Q psy4698 241 FMRDPIKILVKKEEL 255 (258)
Q Consensus 241 ~~~~~~~v~~~~~~~ 255 (258)
|+.+-+.+.+.+..+
T Consensus 543 ~f~~~p~~~~~grt~ 557 (1282)
T KOG0921|consen 543 FFSSIPDVTVHGRTF 557 (1282)
T ss_pred hhccccceeeccccc
Confidence 666544445555544
No 147
>KOG0389|consensus
Probab=98.84 E-value=7.5e-08 Score=88.22 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=105.0
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+-+||.--++++. .+-+.|+.-.+|-|||...+ +.+..+.+.+..+.=||+||+..|-+ |.+.+.+|+. .+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCP--sl 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCP--SL 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCC--ce
Confidence 47889999888853 34468999999999998764 34444554444557899999877654 4555666764 46
Q ss_pred eEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHH-hcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC
Q psy4698 145 SCHACIGGTIVRDDIRKLE----AGAQVVVGTPGRVFDMI-SRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN 219 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l-~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~ 219 (258)
.+..++|....+...+... .+++|+++|+..+..-- .+.-+.-.++.++|+||.|.+ .+.....+.. +-.++.
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmL-KN~~SeRy~~-LM~I~A 552 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHML-KNRTSERYKH-LMSINA 552 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhh-hccchHHHHH-hccccc
Confidence 7788888876655543322 24899999986543100 011122245779999999965 3323333333 333444
Q ss_pred CccEEEEEee-CChhHHHHHHH
Q psy4698 220 DVQVILLSAT-MPADVLDVSMK 240 (258)
Q Consensus 220 ~~~~i~~SAT-~~~~~~~~~~~ 240 (258)
+. .|+++.| +-+++++++..
T Consensus 553 n~-RlLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 553 NF-RLLLTGTPLQNNLKELISL 573 (941)
T ss_pred cc-eEEeeCCcccccHHHHHHH
Confidence 44 5566776 57777776654
No 148
>KOG4439|consensus
Probab=98.80 E-value=2.1e-08 Score=90.68 Aligned_cols=174 Identities=22% Similarity=0.198 Sum_probs=109.8
Q ss_pred CCcHHHHHHhhhhhcC-----CcEEEEcccCCCcchHhHHHHHHHhhh----ccc---cceEEEEeccHHHHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVRG-----NDVIAQAQSGTGKTATFSISILQQVDQ----NIK---ECQALILAPTRELAQQIQKVVI 136 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g-----~~~li~~~tGsGKT~~~l~~~l~~l~~----~~~---~~~~lil~P~~~l~~q~~~~~~ 136 (258)
.+.++|..++.++.-. ...|+....|-|||++.+-.++..-.. ++. ...+||||| -.|..||...+.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 5688999999887633 347889999999999876555543321 111 114899999 567888888887
Q ss_pred HhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHH----HHhc--CCCCCCCc--cEEEEccchhhhccCcHH
Q psy4698 137 ALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFD----MISR--GALSTKQI--RMFVLDEADEMLSRGFKD 208 (258)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~----~l~~--~~~~~~~l--~~lVvDE~h~~~~~~~~~ 208 (258)
.......+.+..++|.....-..+.+ ..+||+|+|+.-+.. -... +.-.+.++ .-||+||||.+-+ ...
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN--~~t 480 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN--SNT 480 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc--cch
Confidence 76666678888888887533333333 349999999966544 1111 11123333 4699999998733 344
Q ss_pred HHHHHHHhCCCCccEEEEEee-CChhHHHHHH--HhcCCCeE
Q psy4698 209 QIYDVFKHLNNDVQVILLSAT-MPADVLDVSM--KFMRDPIK 247 (258)
Q Consensus 209 ~~~~~~~~l~~~~~~i~~SAT-~~~~~~~~~~--~~~~~~~~ 247 (258)
+.-.-++.+...+ ..++|+| +.+...++.. .|+++|-+
T Consensus 481 q~S~AVC~L~a~~-RWclTGTPiqNn~~DvysLlrFLr~~pF 521 (901)
T KOG4439|consen 481 QCSKAVCKLSAKS-RWCLTGTPIQNNLWDVYSLLRFLRCPPF 521 (901)
T ss_pred hHHHHHHHHhhcc-eeecccCccccchhHHHHHHHHhcCCCc
Confidence 4445555665555 4566776 4554333322 36666644
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.79 E-value=5.3e-08 Score=91.62 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=57.8
Q ss_pred CCCCCCcHHHHHHhhhh----hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 65 YGFEKPSAIQQRAIIPC----VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l----~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
+....+++.|.+.+..+ ..++.+++.||||+|||++|+.|++......+ .+++|.++|+.+.+|..+....
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHhhcc
Confidence 44558999999988654 45566999999999999999999998876654 4799999999999888765433
No 150
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.77 E-value=2.2e-07 Score=77.49 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=112.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc----------CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEE
Q psy4698 50 DDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVR----------GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQAL 119 (258)
Q Consensus 50 ~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~----------g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~l 119 (258)
..+.+++.++. .| .++..|.+++-...+ +.-+++--.||.||--..--.+++.+.++.+ |+|
T Consensus 24 y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~v 95 (303)
T PF13872_consen 24 YRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAV 95 (303)
T ss_pred cccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceE
Confidence 44456665554 34 578999999877652 3458999999999998776667777776543 799
Q ss_pred EEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC---CCCC--------C
Q psy4698 120 ILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG---ALST--------K 188 (258)
Q Consensus 120 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~~--------~ 188 (258)
+++.+..|..+..+.++.++.. .+.+..+..-... . ...-+..|+++|+..|..--..+ .-++ .
T Consensus 96 wvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~--~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~ 170 (303)
T PF13872_consen 96 WVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG--D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGE 170 (303)
T ss_pred EEECChhhhhHHHHHHHHhCCC-cccceechhhccC--c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhc
Confidence 9999999999999999988754 2222221111000 0 11223569999999887654321 1111 1
Q ss_pred C-ccEEEEccchhhhccCc--------HHHHHHHHHhCCCCccEEEEEeeCChhHHHH
Q psy4698 189 Q-IRMFVLDEADEMLSRGF--------KDQIYDVFKHLNNDVQVILLSATMPADVLDV 237 (258)
Q Consensus 189 ~-l~~lVvDE~h~~~~~~~--------~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~ 237 (258)
+ =.+||+||+|..-+... ...+..+...+ ++.+++.+|||--.+.+++
T Consensus 171 dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 171 DFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRNM 227 (303)
T ss_pred CCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCcee
Confidence 1 24899999998754322 23444555666 4567999999987665554
No 151
>KOG0392|consensus
Probab=98.76 E-value=6.1e-08 Score=92.37 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=114.2
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhc------cccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQN------IKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~------~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
.+|.||++-++++. .+=+-|+|-.+|-|||+..+-.+....+.. ....-.+|+||+ .|+--|...+.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46889999998864 234789999999999998865555544443 122348999994 6778888888888
Q ss_pred cCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC
Q psy4698 139 GDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN 218 (258)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~ 218 (258)
+.. +++..+.|....+...+.-.+..+|+|+.++.+.+-+.. +.-...-++|+||-|.+ .+....+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVi--kN~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVI--KNSKTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCccee--cchHHHHHHHHHHHh
Confidence 776 455556666665555555555579999999887632211 01113448999999977 445677777888887
Q ss_pred CCccEEEEEee-CChhHHHHHHHh
Q psy4698 219 NDVQVILLSAT-MPADVLDVSMKF 241 (258)
Q Consensus 219 ~~~~~i~~SAT-~~~~~~~~~~~~ 241 (258)
.+.++| +|.| +-+++.+++..|
T Consensus 1128 a~hRLI-LSGTPIQNnvleLWSLF 1150 (1549)
T KOG0392|consen 1128 ANHRLI-LSGTPIQNNVLELWSLF 1150 (1549)
T ss_pred hcceEE-eeCCCcccCHHHHHHHH
Confidence 666555 5777 577777776654
No 152
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.76 E-value=1.7e-07 Score=76.38 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=50.1
Q ss_pred CCcHHHHHHhhhhhcCCc-EEEEcccCCCcchHhHHHHHHHh-----hhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVRGND-VIAQAQSGTGKTATFSISILQQV-----DQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~-~li~~~tGsGKT~~~l~~~l~~l-----~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
++++.|.+|+..++.... .+|.||+|+|||.+..-.+...+ .....+.++++++|+...++.....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999988888 99999999999966543333331 1234556899999999999999888766
No 153
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=1e-07 Score=89.19 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=99.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
|. .|++.|...--.+..|+ +..+.||-|||+++.+|++-....+. .+-|++...-||..-..++..+...+|+.
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fLGLs 149 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFLGLS 149 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHhCCc
Confidence 55 89999999988888887 89999999999999998876655543 47788888899999899999998999999
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEEccchhhh
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA------LSTKQIRMFVLDEADEML 202 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~l~~lVvDE~h~~~ 202 (258)
+.+...+......... -.|||.+||...| +++|+.+- .-...+.+.||||+|.++
T Consensus 150 vG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 150 VGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9877665444433322 3489999998776 45565432 224678899999999875
No 154
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.71 E-value=1.3e-07 Score=75.45 Aligned_cols=123 Identities=19% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCcHHHHHHhhhhhcCC--cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVRGN--DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
++++-|.+++..++... -+++.|+.|+|||.+. ..+...+... +.++++++||...+....+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~---~------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREKT---G------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHHH---T-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh---C-------
Confidence 36889999999986543 4788899999999863 4455555543 358999999998888766642 0
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC----CCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC-Cc
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA----LSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN-DV 221 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~-~~ 221 (258)
+-..|..+++....... ..+...++|||||+..+ ....+..++...+. ..
T Consensus 68 ---------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 ---------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAKKSGA 122 (196)
T ss_dssp ---------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-
T ss_pred ---------------------cchhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHHhcCC
Confidence 11223332222111111 11456679999999976 34556667777665 67
Q ss_pred cEEEEEee
Q psy4698 222 QVILLSAT 229 (258)
Q Consensus 222 ~~i~~SAT 229 (258)
++|++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 77877654
No 155
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.69 E-value=3.7e-07 Score=84.99 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=102.4
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
.-.+|.+|+|||||.+..-++-+.+.+ +..++++++..++|+.+....++..+- .++....-.++.... ..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 348999999999999876665554433 334899999999999999998866431 123222211111110 11
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHH------HHH-HHHHhCCCCccEEEEEeeCChhHHHH
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKD------QIY-DVFKHLNNDVQVILLSATMPADVLDV 237 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~------~~~-~~~~~l~~~~~~i~~SAT~~~~~~~~ 237 (258)
..+-+++..++|.++.. -.+.++++||+||+-..+..-+.. ... .+...+.....+|++-|++....-+|
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 25677778877765542 246678999999998776542211 122 23333456678999999999999999
Q ss_pred HHHhcC-CCeEEEecC
Q psy4698 238 SMKFMR-DPIKILVKK 252 (258)
Q Consensus 238 ~~~~~~-~~~~v~~~~ 252 (258)
+..+.. +++.+.++.
T Consensus 198 l~~~Rp~~~i~vI~n~ 213 (824)
T PF02399_consen 198 LASCRPDENIHVIVNT 213 (824)
T ss_pred HHHhCCCCcEEEEEee
Confidence 988755 555555443
No 156
>KOG1000|consensus
Probab=98.58 E-value=4.5e-07 Score=79.42 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=96.1
Q ss_pred CCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 68 EKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 68 ~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
..+.|+|++-+.. +..|..+++.-.+|-|||+.++..+ ..+..+ --.+|+||. .+...|.+.+.+|...... +
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyraE---wplliVcPA-svrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRAE---WPLLIVCPA-SVRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhhc---CcEEEEecH-HHhHHHHHHHHHhcccccc-e
Confidence 3678999999987 5566779999999999999875332 222222 248999995 4556677777776543322 3
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEE
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILL 226 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~ 226 (258)
....++..... .+.....|.|.+++.+..+-. .+.-...+++|+||.|++ ..........++..+..-..+|++
T Consensus 271 ~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~L-k~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHML-KDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhh-hccchhhhhhhhhHHHHhhheEEe
Confidence 33333332111 111224688888877653322 122344789999999965 444555566666666666678999
Q ss_pred EeeC
Q psy4698 227 SATM 230 (258)
Q Consensus 227 SAT~ 230 (258)
|.|.
T Consensus 345 SGTP 348 (689)
T KOG1000|consen 345 SGTP 348 (689)
T ss_pred cCCc
Confidence 9984
No 157
>KOG0391|consensus
Probab=98.54 E-value=7.2e-07 Score=84.98 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=107.9
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.++.||..-++++. .+-|-|+.-.+|-|||+..+-.+.+...++++=+--||++||-.+. .|.-.+++|+- ++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRwcP--gl 691 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRWCP--GL 691 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhhCC--cc
Confidence 56899999998864 2336899999999999887555555555544434568888876544 45666888874 57
Q ss_pred eEEEEECCcchHHHHHHHhcC---CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCc
Q psy4698 145 SCHACIGGTIVRDDIRKLEAG---AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDV 221 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~---~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~ 221 (258)
++..++|....+..++.-+.+ .+|.|+++..+++-+.. |.-++.+++|+||||++-++ ....+.+++. ++. -
T Consensus 692 KILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf-ksqrWQAlln-fns-q 766 (1958)
T KOG0391|consen 692 KILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF-KSQRWQALLN-FNS-Q 766 (1958)
T ss_pred eEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch-hHHHHHHHhc-cch-h
Confidence 778888888766665555443 67888888777654433 44566789999999988433 3334444443 223 4
Q ss_pred cEEEEEee-CChhHHHHH
Q psy4698 222 QVILLSAT-MPADVLDVS 238 (258)
Q Consensus 222 ~~i~~SAT-~~~~~~~~~ 238 (258)
|.++++.| +-+.+.+++
T Consensus 767 rRLLLtgTPLqNslmELW 784 (1958)
T KOG0391|consen 767 RRLLLTGTPLQNSLMELW 784 (1958)
T ss_pred heeeecCCchhhHHHHHH
Confidence 56666776 455544443
No 158
>PRK10536 hypothetical protein; Provisional
Probab=98.53 E-value=1.5e-06 Score=71.36 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHH-----------HHHH
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQ-----------QIQK 133 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~-----------q~~~ 133 (258)
.++...+..|...+.++.++..+++.|++|+|||+.+...+++.+..+ ...++++.=|.....+ ....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 355567889999999998888899999999999999887777666543 2335666656644221 1112
Q ss_pred HHHHhcCCCCceEEEEECCcchHHHHHHH-h-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 134 VVIALGDFMSVSCHACIGGTIVRDDIRKL-E-AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
.+..+.+.+... .+. ...... . ....|-|... .+++...+ . -++||+|||+.+ ....+.
T Consensus 134 ~~~pi~D~L~~~----~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrtl--~-~~~vIvDEaqn~----~~~~~k 194 (262)
T PRK10536 134 YFRPVYDVLVRR----LGA----SFMQYCLRPEIGKVEIAPF----AYMRGRTF--E-NAVVILDEAQNV----TAAQMK 194 (262)
T ss_pred HHHHHHHHHHHH----hCh----HHHHHHHHhccCcEEEecH----HHhcCCcc--c-CCEEEEechhcC----CHHHHH
Confidence 222221111100 011 111111 1 1123444443 34443332 2 269999999976 357888
Q ss_pred HHHHhCCCCccEEEEEee----C----ChhHHHHHHHhcCCC
Q psy4698 212 DVFKHLNNDVQVILLSAT----M----PADVLDVSMKFMRDP 245 (258)
Q Consensus 212 ~~~~~l~~~~~~i~~SAT----~----~~~~~~~~~~~~~~~ 245 (258)
.++.++..+.++|+..-. + ++.+......|-..+
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD~p~~~~sGL~~~~~~~k~~~ 236 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCDLPRGVKSGLSDALERFEEDE 236 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhccCCCCCCCCHHHHHHHhCCCC
Confidence 999999999988886543 1 234555555555444
No 159
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.53 E-value=4e-07 Score=84.36 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=85.2
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH---HHHH-h-cCCCC-ceEEEEECCcchHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK---VVIA-L-GDFMS-VSCHACIGGTIVRDD 158 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~---~~~~-~-~~~~~-~~~~~~~~~~~~~~~ 158 (258)
-++=|.+.||+|||.||+-.++..-..-+ -.+.||++|+.+.-.-++. .+.+ | .+.+. .+...+.-.......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 46888999999999999888776544443 3489999999887554322 2222 2 22222 222222221222222
Q ss_pred HHHHhcCCcEEEeChHHHHHH------HhcCCCCCCC--------------c-cEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 159 IRKLEAGAQVVVGTPGRVFDM------ISRGALSTKQ--------------I-RMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 159 ~~~~~~~~~Ilv~Tp~~l~~~------l~~~~~~~~~--------------l-~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
.....+++.+++.|.+.+.+- +........+ + -++|+||.|++... .....-+..+
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~---~k~~~~i~~l 230 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD---DKTYGAIKQL 230 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc---hHHHHHHHhh
Confidence 223345578888887665432 2111111111 1 28999999998653 3333445555
Q ss_pred CCCccEEEEEeeCChhHH
Q psy4698 218 NNDVQVILLSATMPADVL 235 (258)
Q Consensus 218 ~~~~~~i~~SAT~~~~~~ 235 (258)
++-+ ++-++||.+.+..
T Consensus 231 ~pl~-ilRfgATfkd~y~ 247 (985)
T COG3587 231 NPLL-ILRFGATFKDEYN 247 (985)
T ss_pred CceE-EEEecccchhhhc
Confidence 4433 7789999998766
No 160
>KOG1002|consensus
Probab=98.53 E-value=9.8e-07 Score=77.40 Aligned_cols=151 Identities=23% Similarity=0.216 Sum_probs=97.4
Q ss_pred CCcHHHHHHhhhhhcCC-----cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 69 KPSAIQQRAIIPCVRGN-----DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~-----~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.+-++|++.+-++.... .-++.-.+|.|||+..+..++..+ .+...++++|+.++ .||.+.+.++.. -.
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra~tLVvaP~VAl-mQW~nEI~~~T~-gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRAPTLVVAPTVAL-MQWKNEIERHTS-GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccCCeeEEccHHHH-HHHHHHHHHhcc-Cc
Confidence 56789999998876442 357788999999998765555433 33369999999886 567777877765 34
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-------------CCCCcc--EEEEccchhhhccCcHH
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-------------STKQIR--MFVLDEADEMLSRGFKD 208 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-------------~~~~l~--~lVvDE~h~~~~~~~~~ 208 (258)
..+..++|.... ...+.+.+ +|++.+|+..+....+++.. .+.+++ -||+||||.+-+.. .+
T Consensus 258 lkv~~YhG~~R~-~nikel~~-YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~-sn 334 (791)
T KOG1002|consen 258 LKVYIYHGAKRD-KNIKELMN-YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ-SN 334 (791)
T ss_pred eEEEEEeccccc-CCHHHhhc-CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc-cc
Confidence 666777766533 23334444 89999999988877654211 123333 59999999874432 22
Q ss_pred HHHHHHHhCCCCccEEEEEeeC
Q psy4698 209 QIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 209 ~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
...++. .+ .....+++|.|.
T Consensus 335 TArAV~-~L-~tt~rw~LSGTP 354 (791)
T KOG1002|consen 335 TARAVF-AL-ETTYRWCLSGTP 354 (791)
T ss_pred HHHHHH-hh-HhhhhhhccCCc
Confidence 222222 12 123456778874
No 161
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.52 E-value=2.6e-07 Score=87.66 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=96.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.++++|...--.+.+|+ +..+.||-|||+++.+|++-....+. .+=+++-.--||..=..++..+....|+.+.+
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~---gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~ 212 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGR---GVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGV 212 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCC---CcEEEeechHhhhhhHHHHHHHHHHhCCeeee
Confidence 58889988888888888 89999999999999999987777653 36677777888888888999988899999988
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEEccchhhh
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA------LSTKQIRMFVLDEADEML 202 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~l~~lVvDE~h~~~ 202 (258)
...+...... ...-.|||.+||..-| +++|+.+- .-...+.+.||||+|.++
T Consensus 213 i~~~~~~~~R--r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 213 ILNTMRPEER--REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 7554333322 3344589999998765 45554431 223567899999999874
No 162
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.51 E-value=1.3e-06 Score=80.82 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=87.3
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh--ccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ--NIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~--~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.++|+.|+.....++-++|.|++|+|||.+.. .++..+.. .....++++..||..-+....+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 58999999998888899999999999998753 22222222 1233578889999888887777664432222110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHh------cCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCcc
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMIS------RGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQ 222 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~------~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~ 222 (258)
... ......-..|..+++.... ++.-+.-.+++|||||+.++ -...+..+++.+++.++
T Consensus 230 -------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 -------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHAR 294 (615)
T ss_pred -------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCE
Confidence 000 0001112234444433211 11122335689999999965 35666778888999999
Q ss_pred EEEEEee
Q psy4698 223 VILLSAT 229 (258)
Q Consensus 223 ~i~~SAT 229 (258)
+|++.-.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 9988644
No 163
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.50 E-value=7.1e-07 Score=77.75 Aligned_cols=108 Identities=15% Similarity=0.213 Sum_probs=68.0
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
.++|.|.+|||||++++-.+. .+.....+.+++++++...+.......+..... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-HhhccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 479999999999998754443 332233455899999999999988876644320 000
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-------cHHHHHHHHHh
Q psy4698 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-------FKDQIYDVFKH 216 (258)
Q Consensus 166 ~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-------~~~~~~~~~~~ 216 (258)
....+..+..+...+.........+++|||||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233334444333332223455678999999999997631 23566666665
No 164
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.49 E-value=1.9e-06 Score=79.44 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh---ccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ---NIKECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
.+.|+.++...+.++-++|.|+.|+|||.+.. .++..+.. ...+.++++.+||.--+....+............
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 37899999999999999999999999998753 22222222 1113579999999887777766554432211110
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc------CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCc
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR------GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDV 221 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~ 221 (258)
. .......+-..|..+++..... ..-+...+++|||||+-++ -...+..+++.+++..
T Consensus 224 --------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNT 287 (586)
T ss_pred --------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCC
Confidence 0 0000111223454444433211 1112335789999999965 2446667888888889
Q ss_pred cEEEEEee
Q psy4698 222 QVILLSAT 229 (258)
Q Consensus 222 ~~i~~SAT 229 (258)
++|++.-.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 99988543
No 165
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.49 E-value=3.1e-07 Score=87.38 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.++++|...--.+.+|+ +..+.||-|||+++.+|++.....+. .+-+++..--||..=..++..+...+|+.+.+
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~Gk---gVHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGN---GVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCC---CcEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 67888888887888888 89999999999999999987777653 36777777889888888888888888999987
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~ 202 (258)
........... .-.-.|||.++|..-| +++|+.+ ..-...+.+.||||+|.++
T Consensus 244 i~~~~~~~~~r-r~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 244 IDKHQPNSEAR-RKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cCCCCCCHHHH-HHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 65433223332 3334589999997765 4455433 1223567899999999874
No 166
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.47 E-value=3.3e-06 Score=79.97 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=80.9
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
..+++.|++|+..+..++.+++.|+.|+|||.+. -.++..+...+...++++++||..-+....+.. +..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~~-- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GLT-- 391 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CCc--
Confidence 3799999999999988889999999999999864 444444444332246888899977776443311 110
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-----CCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCcc
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-----ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQ 222 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~ 222 (258)
-.|..+++.+.... .-.....++|||||++++. ...+..+++.++...+
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 01222222111000 0112356799999999762 3445677778888888
Q ss_pred EEEEEee
Q psy4698 223 VILLSAT 229 (258)
Q Consensus 223 ~i~~SAT 229 (258)
+|++.-.
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8887544
No 167
>KOG0952|consensus
Probab=98.35 E-value=3.5e-07 Score=86.28 Aligned_cols=135 Identities=15% Similarity=0.202 Sum_probs=97.1
Q ss_pred CCcHHHHHHhhhhhc-CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 69 KPSAIQQRAIIPCVR-GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~-g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
...+.|...+-.+.. ..++++.+|||+|||.++.+.+...+... .+.+++|+.|.++|+....+.+.......++.+.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 445566665533322 24689999999999999999988776655 4479999999999999988877665544477777
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHh--cCCCCCCCccEEEEccchhhhccCcHH
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMIS--RGALSTKQIRMFVLDEADEMLSRGFKD 208 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~--~~~~~~~~l~~lVvDE~h~~~~~~~~~ 208 (258)
...|+.... .... ...+++|+||++.....+ .+.-.+.+++.+|+||.|.+. .+++.
T Consensus 1006 e~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgP 1064 (1230)
T KOG0952|consen 1006 ELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGP 1064 (1230)
T ss_pred eccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcc
Confidence 777665544 1222 337999999999766655 244467889999999999653 33343
No 168
>KOG1802|consensus
Probab=98.34 E-value=2.7e-06 Score=77.07 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=63.9
Q ss_pred HHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 61 GIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 61 ~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.+-..++++++.-|..|+.++++..-.+|.||+|+|||.+....+++.+.. ....+|+.+|+..-++|+...+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC
Confidence 444567889999999999999999999999999999999876666655554 33479999999999999998886654
No 169
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.34 E-value=1.3e-05 Score=64.69 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=92.5
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc---CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVR---GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~---g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|.-...+..++=.+. .++ -+++.|.+......+ |+|.+....+|.|||.+. .|++..+..++.. -+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~-LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSR-LVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCc-EEEEEcC-
Confidence 4555555666654443 344 689999999888764 578999999999999985 6777666665432 4666666
Q ss_pred HHHHHHHHHHHHH-hcCCCCceEEE--EECCcchH--------HHHHHHhcCCcEEEeChHHHHHHHh-------cCCC-
Q psy4698 125 RELAQQIQKVVIA-LGDFMSVSCHA--CIGGTIVR--------DDIRKLEAGAQVVVGTPGRVFDMIS-------RGAL- 185 (258)
Q Consensus 125 ~~l~~q~~~~~~~-~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~Ilv~Tp~~l~~~l~-------~~~~- 185 (258)
++|..|.+..++. ++.-.+-.+.. +....... ...+.......|+++||+.++.+.- .+..
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 6788888888766 44433433322 22222111 1112223345799999998865321 1110
Q ss_pred ----------CCCCccEEEEccchhhhc
Q psy4698 186 ----------STKQIRMFVLDEADEMLS 203 (258)
Q Consensus 186 ----------~~~~l~~lVvDE~h~~~~ 203 (258)
.+.+-..=|+||+|..+.
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 122334569999997753
No 170
>KOG4150|consensus
Probab=98.26 E-value=4e-06 Score=74.90 Aligned_cols=194 Identities=8% Similarity=-0.094 Sum_probs=131.8
Q ss_pred HHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 61 GIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 61 ~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.+.++...+...+|.+++..+.+|++..+.-.|.+||.++|.+.....+.... ....+++.|+.+++....+...-...
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEEEEE
Confidence 34455566789999999999999999999999999999999888877665442 34689999999988876553322211
Q ss_pred C---CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC----CCCCccEEEEccchhhhccCcHHHHHHH
Q psy4698 141 F---MSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL----STKQIRMFVLDEADEMLSRGFKDQIYDV 213 (258)
Q Consensus 141 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----~~~~l~~lVvDE~h~~~~~~~~~~~~~~ 213 (258)
. ....+.-.+++.....+...++.+.+++++.|..+...+--+.. .+-...++++||+|.+ ...+.......
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y-~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY-LFPTKALAQDQ 435 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee-ecchhhHHHHH
Confidence 1 12233344555555555556667789999999877654432222 2234568999999954 34344444433
Q ss_pred HHhC---------CCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 214 FKHL---------NNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 214 ~~~l---------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
++++ +.+.|++--|||+-...+.....+.-+-+-+...+++.|
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs 487 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS 487 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC
Confidence 3333 246799999999988877777677666666666666654
No 171
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.20 E-value=6.5e-06 Score=70.07 Aligned_cols=144 Identities=17% Similarity=0.261 Sum_probs=91.5
Q ss_pred CCCCCCcHHHHHHhhhhhcCC--cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGN--DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFM 142 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 142 (258)
.|+..-+..|..|+..++... -+.+.|..|+|||+.++.+.++.....+...++|+.=|+..+.+++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIG---------- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIG---------- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccC----------
Confidence 477677889999999988764 38889999999999999999988887766668888878766543321
Q ss_pred CceEEEEECCc--chHHHHHHHhcCCcEEE----eChHHHHHHHhcCCCCCC--------Cc--cEEEEccchhhhccCc
Q psy4698 143 SVSCHACIGGT--IVRDDIRKLEAGAQVVV----GTPGRVFDMISRGALSTK--------QI--RMFVLDEADEMLSRGF 206 (258)
Q Consensus 143 ~~~~~~~~~~~--~~~~~~~~~~~~~~Ilv----~Tp~~l~~~l~~~~~~~~--------~l--~~lVvDE~h~~~~~~~ 206 (258)
+ +-|.. +...|...+...-..++ |+-+.+-..+.++.+.+. .+ +++|+|||+.+ -
T Consensus 294 -f----LPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL----T 364 (436)
T COG1875 294 -F----LPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL----T 364 (436)
T ss_pred -c----CCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----C
Confidence 0 00110 00111111111111111 123334444443332221 11 48999999987 5
Q ss_pred HHHHHHHHHhCCCCccEEEEE
Q psy4698 207 KDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~S 227 (258)
-.+++.++.+..+..+++++.
T Consensus 365 pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHHhccCCCEEEEcC
Confidence 678899999999988888874
No 172
>PF13245 AAA_19: Part of AAA domain
Probab=98.19 E-value=6e-06 Score=55.26 Aligned_cols=52 Identities=29% Similarity=0.410 Sum_probs=39.3
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhh-ccccceEEEEeccHHHHHHHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQ-NIKECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~~lil~P~~~l~~q~~~~~ 135 (258)
+.-++|.||+|||||.+..-.+...+.. ...+.++++++|++..++...+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3446669999999998776666655532 222568999999999999988877
No 173
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=5.7e-05 Score=66.27 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=75.8
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhh-ccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQ-NIKECQALILA--PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK 161 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
+.+++.||||+|||++..-.+...... ...+.++.++. +++.-+..+ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-------------
Confidence 468999999999998874333222222 12334555555 334444333 33444433443311
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCCCC-ccEEEEEeeC-ChhHHHHH
Q psy4698 162 LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLNND-VQVILLSATM-PADVLDVS 238 (258)
Q Consensus 162 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~~~-~~~i~~SAT~-~~~~~~~~ 238 (258)
+-+++.+...+.. +.+.++|+||++.+..... ....+..++...... -.++.+|||. .+++.+..
T Consensus 239 --------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 239 --------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 1234444444443 3568899999999765321 234566666665433 3678889998 45778888
Q ss_pred HHhcC
Q psy4698 239 MKFMR 243 (258)
Q Consensus 239 ~~~~~ 243 (258)
+.|..
T Consensus 307 ~~~~~ 311 (388)
T PRK12723 307 HQFSP 311 (388)
T ss_pred HHhcC
Confidence 88843
No 174
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.15 E-value=5.3e-05 Score=73.54 Aligned_cols=126 Identities=18% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCCCCCcHHHHHHhhhhhcCC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.|+ .+++-|.+++..++.++ -+++.|+.|+|||.+ +-.+...+... +.+++.++||-.-+..... ..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e-------~tG 411 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEG-------GSG 411 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhh-------ccC
Confidence 344 79999999999988865 489999999999986 34454444433 4579999998765544432 111
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC-CCCcc
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL-NNDVQ 222 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l-~~~~~ 222 (258)
+. -.|..+++.-...+...+...++|||||+-++. ...+..+++.. +..++
T Consensus 412 i~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~gar 463 (988)
T PRK13889 412 IA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAK 463 (988)
T ss_pred cc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCE
Confidence 11 113333322122223345567899999999653 22344555433 45677
Q ss_pred EEEEEee
Q psy4698 223 VILLSAT 229 (258)
Q Consensus 223 ~i~~SAT 229 (258)
+|++.-+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 7777544
No 175
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.10 E-value=4.7e-05 Score=71.21 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCCcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 68 EKPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
+.+++.|..|+..++.. ..++|.||+|+|||.+..-.+.+.+.. +.++++++||...+..+.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998766 678999999999998765444443332 33899999999999998887765
No 176
>KOG2340|consensus
Probab=98.09 E-value=1.6e-05 Score=70.53 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=112.7
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEE-cccCCCc--chHhHHHHHHHhhh----------------------------ccccc
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQ-AQSGTGK--TATFSISILQQVDQ----------------------------NIKEC 116 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~-~~tGsGK--T~~~l~~~l~~l~~----------------------------~~~~~ 116 (258)
..+++.|.+.+....+.++++.. ...+.|+ +-+|-+.+++++.. +...+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 36899999999998899986553 2233455 35566677776622 11236
Q ss_pred eEEEEeccHHHHHHHHHHHHHhcCCCCc---------eEEEEECCcc--------hHHH---------------------
Q psy4698 117 QALILAPTRELAQQIQKVVIALGDFMSV---------SCHACIGGTI--------VRDD--------------------- 158 (258)
Q Consensus 117 ~~lil~P~~~l~~q~~~~~~~~~~~~~~---------~~~~~~~~~~--------~~~~--------------------- 158 (258)
++||+||+|+.|-.+.+.+..+....+- +...-+++.. ....
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999988776332211 0111111100 0000
Q ss_pred ----HHHHhcCCcEEEeChHHHHHHHhcC------CCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC---------
Q psy4698 159 ----IRKLEAGAQVVVGTPGRVFDMISRG------ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN--------- 219 (258)
Q Consensus 159 ----~~~~~~~~~Ilv~Tp~~l~~~l~~~------~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~--------- 219 (258)
...-....||+||+|=.|.-++.+. .-.++.+.++|||.+|.++. +.+..+..++..|+.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHHHHHHHHHHhhcCcccccCCC
Confidence 1111234799999999988777632 22367889999999997653 356666666666542
Q ss_pred ---------------CccEEEEEeeCChhHHHHHHHhcCC
Q psy4698 220 ---------------DVQVILLSATMPADVLDVSMKFMRD 244 (258)
Q Consensus 220 ---------------~~~~i~~SAT~~~~~~~~~~~~~~~ 244 (258)
-.|++++|+--....-.+...++++
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 1478888888777777777776653
No 177
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.07 E-value=0.00011 Score=70.17 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=74.4
Q ss_pred CCcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 69 KPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
.+++-|+.++..+..+ +-++|.|+.|+|||.+. -.+...+... +.++++++||.-.+...... .+..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~~~-------~g~~-- 419 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQAE-------SGIE-- 419 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHHhc-------cCCc--
Confidence 6899999999998774 66899999999999764 3444444432 45799999997666554431 1111
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHh-CCCCccEEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKH-LNNDVQVILL 226 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~-l~~~~~~i~~ 226 (258)
-.|..+++.-...+...+...++|||||+.++.. ..+..++.. .....++|++
T Consensus 420 ----------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 420 ----------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAGAKVVLV 473 (744)
T ss_pred ----------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEEE
Confidence 0122222211122223456778999999996532 223344442 2346677776
Q ss_pred E
Q psy4698 227 S 227 (258)
Q Consensus 227 S 227 (258)
.
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 5
No 178
>KOG1803|consensus
Probab=98.06 E-value=2e-05 Score=70.99 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=52.6
Q ss_pred CCcHHHHHHhhhhhcCC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVRGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 135 (258)
.+.+-|+.|+......+ -.+|.||+|+|||.+....+.+.+.++ .++++..||...++.+.+++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHh
Confidence 57888999998887774 489999999999998766666666654 38999999999988888753
No 179
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.04 E-value=3.4e-05 Score=74.89 Aligned_cols=168 Identities=17% Similarity=0.105 Sum_probs=105.2
Q ss_pred CCCcHHHHHHhhhhh-----cCCcEEEEcccCCCcchHhHHHHHHHhhhccc-cceEEEEeccHHHHHHHHHHHHHhcCC
Q psy4698 68 EKPSAIQQRAIIPCV-----RGNDVIAQAQSGTGKTATFSISILQQVDQNIK-ECQALILAPTRELAQQIQKVVIALGDF 141 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~-----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~ 141 (258)
..++++|.+.++++. .+.+.++...+|.|||+..+..+...+..... .+.++++||+ ++...|.+.+.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 467899999998765 25677888999999998876666553333322 3479999995 5666677777777655
Q ss_pred CCceEEEEECCcch----HHHHHHHhcC-----CcEEEeChHHHHHHH-hcCCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 142 MSVSCHACIGGTIV----RDDIRKLEAG-----AQVVVGTPGRVFDMI-SRGALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 142 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~Ilv~Tp~~l~~~l-~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
... +...+|.... .......... .+++++|.+.+.+.. .+..+.-.....+|+||+|.+-+. ......
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~-~s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND-QSSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh-hhHHHH
Confidence 443 5555665531 3333333332 689999999887632 122233445679999999986433 222223
Q ss_pred HHHHhCCCCccEEEEEeeC-ChhHHHHHHH
Q psy4698 212 DVFKHLNNDVQVILLSATM-PADVLDVSMK 240 (258)
Q Consensus 212 ~~~~~l~~~~~~i~~SAT~-~~~~~~~~~~ 240 (258)
.+. .++...+ +.+|.|. .+.+.++...
T Consensus 494 ~l~-~~~~~~~-~~LtgTPlen~l~eL~sl 521 (866)
T COG0553 494 ALQ-FLKALNR-LDLTGTPLENRLGELWSL 521 (866)
T ss_pred HHH-HHhhcce-eeCCCChHhhhHHHHHHH
Confidence 333 4444443 7778886 5555554443
No 180
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.04 E-value=6.1e-05 Score=66.66 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=91.8
Q ss_pred hccccceEEEEeccHHHHHHHHHHHHHhcCC-CCce----EEEEEC--------------CcchHHHHHHHh--------
Q psy4698 111 QNIKECQALILAPTRELAQQIQKVVIALGDF-MSVS----CHACIG--------------GTIVRDDIRKLE-------- 163 (258)
Q Consensus 111 ~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~----~~~~~~--------------~~~~~~~~~~~~-------- 163 (258)
++...+++|||+|+|..|-.+.+.+-.+... ..+. ...-+| ......+++.+.
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 3445679999999999999999888776543 1100 000011 001111122211
Q ss_pred -----------------cCCcEEEeChHHHHHHHhc------CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC-
Q psy4698 164 -----------------AGAQVVVGTPGRVFDMISR------GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN- 219 (258)
Q Consensus 164 -----------------~~~~Ilv~Tp~~l~~~l~~------~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~- 219 (258)
..+||||++|=.|...+.. ....++.+.++|+|.+|.++ .+.+..+..++..++.
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQ 191 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccC
Confidence 1369999999999888874 33457899999999999664 4566666666666542
Q ss_pred -----------------------CccEEEEEeeCChhHHHHHHHhcC-CCeEEEe
Q psy4698 220 -----------------------DVQVILLSATMPADVLDVSMKFMR-DPIKILV 250 (258)
Q Consensus 220 -----------------------~~~~i~~SAT~~~~~~~~~~~~~~-~~~~v~~ 250 (258)
-.|+|++|+...+++..+.+..+. -.-.|++
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~ 246 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRL 246 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEE
Confidence 259999999999999999988544 3444444
No 181
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.04 E-value=1.7e-05 Score=67.60 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=54.2
Q ss_pred CcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 70 PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
+++-|.+++.. ...+++|.|+.|||||.+.+--+...+... ....++++++.|+..+.+...++....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 46789999977 677799999999999999887777777665 455689999999999999988887753
No 182
>PRK08181 transposase; Validated
Probab=98.00 E-value=0.00016 Score=60.37 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=77.1
Q ss_pred CcHHHHHHhh----hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce
Q psy4698 70 PSAIQQRAII----PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS 145 (258)
Q Consensus 70 ~~~~Q~~~~~----~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 145 (258)
+...|..++. .+..++++++.||+|+|||..+.... ..+... +.+++|+. ...|..+.....
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia-~~a~~~--g~~v~f~~-~~~L~~~l~~a~---------- 153 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIG-LALIEN--GWRVLFTR-TTDLVQKLQVAR---------- 153 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHH-HHHHHc--CCceeeee-HHHHHHHHHHHH----------
Confidence 3456665553 34577899999999999997654333 233322 23455553 344444432210
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc-HHHHHHHHHhCCCCccEE
Q psy4698 146 CHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF-KDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~-~~~~~~~~~~l~~~~~~i 224 (258)
.. .+.+.+++. +.+.++||+||++....... ...+..++........+|
T Consensus 154 -----------------~~------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I 203 (269)
T PRK08181 154 -----------------RE------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL 203 (269)
T ss_pred -----------------hC------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 00 122222222 23567999999996543322 234555555433345566
Q ss_pred EEEeeCChhHHHH----------HHHhcCCCeEEEecCCc
Q psy4698 225 LLSATMPADVLDV----------SMKFMRDPIKILVKKEE 254 (258)
Q Consensus 225 ~~SAT~~~~~~~~----------~~~~~~~~~~v~~~~~~ 254 (258)
+.|..-+.++... +...+.+..+|.+.+++
T Consensus 204 iTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 204 ITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred EEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 6666666665543 24455667777776654
No 183
>PRK06526 transposase; Provisional
Probab=97.98 E-value=4.2e-05 Score=63.48 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=70.7
Q ss_pred hhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH
Q psy4698 79 IPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD 158 (258)
Q Consensus 79 ~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (258)
..+..+.++++.||+|+|||..+....... ... +.++++... ..+..+... -
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a-~~~--g~~v~f~t~-~~l~~~l~~----~-------------------- 144 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA-CQA--GHRVLFATA-AQWVARLAA----A-------------------- 144 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH-HHC--CCchhhhhH-HHHHHHHHH----H--------------------
Confidence 445667899999999999998764333333 322 234555322 222222211 0
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc-HHHHHHHHHhCCCCccEEEEEeeCChhHHH-
Q psy4698 159 IRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF-KDQIYDVFKHLNNDVQVILLSATMPADVLD- 236 (258)
Q Consensus 159 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~-~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~- 236 (258)
... ++....+ . .+.+.++||+||+|....... ...+..++........+|+.|..-+.++.+
T Consensus 145 ---~~~------~~~~~~l---~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~ 208 (254)
T PRK06526 145 ---HHA------GRLQAEL---V----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEV 208 (254)
T ss_pred ---Hhc------CcHHHHH---H----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHH
Confidence 000 1211111 1 134467999999996532222 233445554332334577777776665443
Q ss_pred ---------HHHHhcCCCeEEEecCCc
Q psy4698 237 ---------VSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 237 ---------~~~~~~~~~~~v~~~~~~ 254 (258)
++....+...+|.+.+++
T Consensus 209 ~~d~~~a~ai~dRl~~~~~~i~~~g~s 235 (254)
T PRK06526 209 FGDDVVAAAMIDRLVHHAEVISLKGDS 235 (254)
T ss_pred cCChHHHHHHHHHHhcCceEEeecCCC
Confidence 234556677777777664
No 184
>KOG0386|consensus
Probab=97.94 E-value=7.7e-06 Score=77.13 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=94.2
Q ss_pred CCcHHHHHHhhhhhcC----CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCVRG----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+.+||...+.+..+= -|-++.-.+|-|||...+--+...+......+--+|++|+-.|.+-.. .+..++. .+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~-Ef~kWaP--Sv 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSS-EFPKWAP--SV 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchh-hcccccc--ce
Confidence 7899999999885432 357889999999998876666666655544456899999888766543 3334432 23
Q ss_pred eEEEEECCcchHHHH--HHHhcCCcEEEeChHHHHHHHhcCCCCCCC--ccEEEEccchhhhccCcHHHHHHHHHhCCCC
Q psy4698 145 SCHACIGGTIVRDDI--RKLEAGAQVVVGTPGRVFDMISRGALSTKQ--IRMFVLDEADEMLSRGFKDQIYDVFKHLNND 220 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~--~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~--l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~ 220 (258)
....+.|....+... .......+|+++|++.+.+ ..-.++. ..++||||-|+| .+....+...+.---..
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRm--KNa~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRM--KNAICKLTDTLNTHYRA 544 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccc--cchhhHHHHHhhccccc
Confidence 333444443333221 1222458999999977653 2112333 357999999998 33445554444422233
Q ss_pred ccEEEEEeeC
Q psy4698 221 VQVILLSATM 230 (258)
Q Consensus 221 ~~~i~~SAT~ 230 (258)
...++++.|.
T Consensus 545 q~RLLLTGTP 554 (1157)
T KOG0386|consen 545 QRRLLLTGTP 554 (1157)
T ss_pred hhhhhhcCCh
Confidence 4456667773
No 185
>KOG1132|consensus
Probab=97.91 E-value=9.8e-05 Score=69.18 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=47.5
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHH---HHHHHhhhc---------c-------------------
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSI---SILQQVDQN---------I------------------- 113 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~---~~l~~l~~~---------~------------------- 113 (258)
.|++.|...+..++ .+.+.++..|||+|||++.+- +..+.+..+ .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67888887776654 446799999999999987653 333333200 0
Q ss_pred --------ccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 114 --------KECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 114 --------~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.-++++|-+-|..-..|+.+.+++.+
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 01356666677777778877777654
No 186
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.90 E-value=0.00031 Score=68.83 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc-CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHH
Q psy4698 53 ELSEELLRGIYAYGFEKPSAIQQRAIIPCVR-GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQI 131 (258)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~-g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~ 131 (258)
++++.........++ .+++-|..++..+.. ++-+++.|+.|+|||.+. -.+...+... +.+++-++||-.-+...
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~--G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA--GYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEEcCcHHHHHHH
Confidence 344444444333343 799999999998754 456999999999999874 3444444433 45799999987666554
Q ss_pred HHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 132 QKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
.+. .++. -.|..+++.....+...+..-++|||||+.++. ...+.
T Consensus 442 ~e~-------~Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~ 486 (1102)
T PRK13826 442 EKE-------AGIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMA 486 (1102)
T ss_pred HHh-------hCCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHH
Confidence 331 1111 112222211111122345556799999999652 33444
Q ss_pred HHHHhCC-CCccEEEEEee
Q psy4698 212 DVFKHLN-NDVQVILLSAT 229 (258)
Q Consensus 212 ~~~~~l~-~~~~~i~~SAT 229 (258)
.+++... ..+++|++.-+
T Consensus 487 ~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHhcCCEEEEECCH
Confidence 5555553 46777777544
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.90 E-value=0.00018 Score=53.56 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999754
No 188
>KOG0388|consensus
Probab=97.89 E-value=4.9e-05 Score=69.68 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=103.6
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
++-.||.+-++++. +|-|-|+.-.+|-|||...+-.+.+......--+-.||++|...| ..|++.+.+|+. .+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP--~~ 643 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLP--SF 643 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCc--cc
Confidence 45678888888764 567889999999999998855554444443333468999997665 345555656653 46
Q ss_pred eEEEEECCcchHHHHHHH---------hcCCcEEEeChHHHH---HHHhcCCCCCCCccEEEEccchhhhccCcHHHHHH
Q psy4698 145 SCHACIGGTIVRDDIRKL---------EAGAQVVVGTPGRVF---DMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYD 212 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~---------~~~~~Ilv~Tp~~l~---~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~ 212 (258)
.+.-+.|+...+...+.. ..+.+|+|++++.+. +++++- ...+.|+|||+.+- +........
T Consensus 644 k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkv-----KWQYMILDEAQAIK-SSsS~RWKt 717 (1185)
T KOG0388|consen 644 KVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKV-----KWQYMILDEAQAIK-SSSSSRWKT 717 (1185)
T ss_pred eeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhh-----hhhheehhHHHHhh-hhhhhHHHH
Confidence 777788888776655552 234789999987653 233221 24589999999763 334555555
Q ss_pred HHHhCCCCccEEEEEeeC-ChhHHHHH
Q psy4698 213 VFKHLNNDVQVILLSATM-PADVLDVS 238 (258)
Q Consensus 213 ~~~~l~~~~~~i~~SAT~-~~~~~~~~ 238 (258)
++.. +....++++.|. -+.+++++
T Consensus 718 LLsF--~cRNRLLLTGTPIQNsMqELW 742 (1185)
T KOG0388|consen 718 LLSF--KCRNRLLLTGTPIQNSMQELW 742 (1185)
T ss_pred Hhhh--hccceeeecCCccchHHHHHH
Confidence 6554 233456777774 55555544
No 189
>KOG0989|consensus
Probab=97.88 E-value=2e-05 Score=65.62 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=35.4
Q ss_pred CCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 184 ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 184 ~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
....+.++.||+||+|.|.. .-...+.+.+.......++++...-+++
T Consensus 124 ~~~~~~fKiiIlDEcdsmts-daq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTS-DAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCCcceEEEEechhhhhH-HHHHHHHHHHhccccceEEEEEcCChhh
Confidence 34567789999999998753 3667777788877777788877766543
No 190
>PRK04296 thymidine kinase; Provisional
Probab=97.83 E-value=4.5e-05 Score=60.54 Aligned_cols=113 Identities=13% Similarity=0.174 Sum_probs=56.6
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE 163 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (258)
|.-.++.|++|+|||..++-.+...... +.+++++-|...-... ...+....++...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~~~d~~~~----~~~i~~~lg~~~~---------------- 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKPAIDDRYG----EGKVVSRIGLSRE---------------- 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEecccccccc----CCcEecCCCCccc----------------
Confidence 3446899999999998765444333222 3467877653111000 0011111111110
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 164 AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 164 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
.+.+...+.+++.+.. .-.+.++||+||+|.+. ..++..+++.+.+.-..+++++-
T Consensus 59 ---~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ---AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ---ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0223445555555544 23467899999998642 23345555554333334444443
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.78 E-value=8.8e-05 Score=54.77 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=14.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~ 105 (258)
+++.++|.|++|+|||......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 34668999999999998764433
No 192
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=3.9e-05 Score=69.07 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred EEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH-hcCCCCceEEEEECCcch----HHHHHHHh
Q psy4698 89 AQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA-LGDFMSVSCHACIGGTIV----RDDIRKLE 163 (258)
Q Consensus 89 i~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~ 163 (258)
+.+.||||||+++.-.+++....+.+ ..|+.|..-...+....-+-. .....-+.-....++... ........
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 56899999999986666666555543 577877765554443221100 000000000000111100 00111234
Q ss_pred cCCcEEEeChHHHHHHHhc---CCCCC---CCcc-EEEEccchhhhccCc-----H----HHHHHH-H--HhCCCCccEE
Q psy4698 164 AGAQVVVGTPGRVFDMISR---GALST---KQIR-MFVLDEADEMLSRGF-----K----DQIYDV-F--KHLNNDVQVI 224 (258)
Q Consensus 164 ~~~~Ilv~Tp~~l~~~l~~---~~~~~---~~l~-~lVvDE~h~~~~~~~-----~----~~~~~~-~--~~l~~~~~~i 224 (258)
.+..|+++|.+.|...+.+ +.+.+ .+.. +++-||+|++-...- . ..+... + -.-+++.-++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 5688999999999877654 33333 3333 467899999842110 1 111111 1 1124556678
Q ss_pred EEEeeCChhHHHHHHHhcC
Q psy4698 225 LLSATMPADVLDVSMKFMR 243 (258)
Q Consensus 225 ~~SAT~~~~~~~~~~~~~~ 243 (258)
.+|||+|++ ++...+|-.
T Consensus 160 ef~at~~k~-k~v~~ky~d 177 (812)
T COG3421 160 EFSATIPKE-KSVEDKYED 177 (812)
T ss_pred hhhhcCCcc-ccHHHHhcc
Confidence 899999943 555555543
No 193
>KOG1015|consensus
Probab=97.72 E-value=0.00043 Score=65.60 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=77.7
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhcccc-ceEEEEeccHHHHHHHHHHHHHhcCCC----CceEEEEECCcchHHH-
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKE-CQALILAPTRELAQQIQKVVIALGDFM----SVSCHACIGGTIVRDD- 158 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~-~~~lil~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 158 (258)
-.+|+..-+|-|||+..+..+...+.....+ .++||+||. ..+..|++.|.++.... .+.+..+..-......
T Consensus 697 sGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~Pl-Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~ 775 (1567)
T KOG1015|consen 697 SGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPL-NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERS 775 (1567)
T ss_pred cchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcch-HHHHHHHHHHHHhcccccccccceeehhhhccChHHHH
Confidence 4588888999999988655544444443333 379999995 45566777777765532 2333322222221111
Q ss_pred --HHHHhcCCcEEEeChHHHHHHHhcC-------------CCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccE
Q psy4698 159 --IRKLEAGAQVVVGTPGRVFDMISRG-------------ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQV 223 (258)
Q Consensus 159 --~~~~~~~~~Ilv~Tp~~l~~~l~~~-------------~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~ 223 (258)
...-.+...|.|.-++.+..+-... .+--+.-++||+||+|-+ .+ -...+-..+..+.-. +.
T Consensus 776 ~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiL-KN-eksa~Skam~~irtk-RR 852 (1567)
T KOG1015|consen 776 YMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHIL-KN-EKSAVSKAMNSIRTK-RR 852 (1567)
T ss_pred HHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhh-cc-chHHHHHHHHHHHhh-ee
Confidence 1111223367776666554433221 112245679999999955 33 233444444444333 45
Q ss_pred EEEEeeC
Q psy4698 224 ILLSATM 230 (258)
Q Consensus 224 i~~SAT~ 230 (258)
|+++.|.
T Consensus 853 I~LTGTP 859 (1567)
T KOG1015|consen 853 IILTGTP 859 (1567)
T ss_pred EEeecCc
Confidence 6667763
No 194
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00011 Score=69.18 Aligned_cols=127 Identities=18% Similarity=0.257 Sum_probs=94.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.++.+|...--.+..|+ ++.+-||-|||+++.+|+.-....+. .+.+++-.--|+..-..++..+..++++.+.+
T Consensus 80 ~~~dVQliG~i~lh~g~--iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQLLGGIVLHLGD--IAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHHHhhhhhhcCCc--eeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 56777777766666665 89999999999999999876666543 47888888889988889999998999999988
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~ 202 (258)
...+....+.... -.|||.++|-..+ +++++.+ .....++.+-|+||+|.++
T Consensus 155 ~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 155 ILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 7777654444332 2379999998765 3344322 2234467899999999764
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=8.5e-05 Score=54.83 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
+..+++.||+|+|||......+ ..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCCC--CCEEEECCEEcc
Confidence 4678999999999998763332 2222221 246777665443
No 196
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.70 E-value=7.8e-05 Score=65.30 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=43.4
Q ss_pred CcHHHHHHhhhh------hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHH
Q psy4698 70 PSAIQQRAIIPC------VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQI 131 (258)
Q Consensus 70 ~~~~Q~~~~~~l------~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~ 131 (258)
+++-|++++..+ .++.++++.|+.|+|||..+ -.+...+.. .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccceEEEecchHHHHHhc
Confidence 678899998888 77889999999999999875 233333333 234688888887666554
No 197
>PRK14974 cell division protein FtsY; Provisional
Probab=97.70 E-value=0.001 Score=57.40 Aligned_cols=130 Identities=19% Similarity=0.286 Sum_probs=76.0
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc---HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT---RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
-+++.|++|+|||++..-.+ ..+... +.+++++... .....|+......+ ++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~--------- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGA--------- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCC---------
Confidence 48899999999998754333 233332 3356666543 33445554444443 33322111111
Q ss_pred hcCCcEEEeChHH-HHHHHhcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 163 EAGAQVVVGTPGR-VFDMISRGALSTKQIRMFVLDEADEMLS-RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~-l~~~l~~~~~~~~~l~~lVvDE~h~~~~-~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
.|.. +.+.+... ...+.++|++|.+.++.. ......+..+.+..+++..++.++|+...+..+.++.
T Consensus 206 ---------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred ---------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 1111 12222211 113467999999998753 3466777778777778888889999987777766666
Q ss_pred hc
Q psy4698 241 FM 242 (258)
Q Consensus 241 ~~ 242 (258)
|.
T Consensus 275 f~ 276 (336)
T PRK14974 275 FN 276 (336)
T ss_pred HH
Confidence 64
No 198
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.70 E-value=0.0018 Score=56.52 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=81.1
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec-cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP-TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK 161 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
+++.+.+.||||-|||++..--+.......++..-+||.+- +|.=|..+.+ .+++-+++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk---~Ya~im~vp~--------------- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK---TYADIMGVPL--------------- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH---HHHHHhCCce---------------
Confidence 36789999999999998754322222212222223444443 3333333222 2222223332
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHHhCCCCccEEEEEeeC-ChhHHHHHH
Q psy4698 162 LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML-SRGFKDQIYDVFKHLNNDVQVILLSATM-PADVLDVSM 239 (258)
Q Consensus 162 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~i~~SAT~-~~~~~~~~~ 239 (258)
.++-+|.-|...+. .+.++++|.||=+-+-. +.....++..++..-.+.-..+.+|||. ..++++...
T Consensus 264 ------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 ------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 44446666655554 24556788888776432 2234566666666665555677889987 557888888
Q ss_pred HhcCCC---eEEEecCCcccC
Q psy4698 240 KFMRDP---IKILVKKEELTL 257 (258)
Q Consensus 240 ~~~~~~---~~v~~~~~~~~~ 257 (258)
.|...| .|++=-||..++
T Consensus 334 ~f~~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 334 QFSLFPIDGLIFTKLDETTSL 354 (407)
T ss_pred HhccCCcceeEEEcccccCch
Confidence 876533 333334554443
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.001 Score=58.14 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=72.5
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec--cH-HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP--TR-ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK 161 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P--~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
+.+++.||+|+|||+....-+.. +.. .+.++.++.- .| ..+.|+..... ..+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--~GkkVglI~aDt~RiaAvEQLk~yae----~lg------------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--KKKTVGFITTDHSRIGTVQQLQDYVK----TIG------------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--cCCcEEEEecCCcchHHHHHHHHHhh----hcC------------------
Confidence 46899999999999876544433 222 2335555543 33 23344333221 112
Q ss_pred HhcCCcEE-EeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhCCCCccEEEEEeeC-ChhHHHHH
Q psy4698 162 LEAGAQVV-VGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLNNDVQVILLSATM-PADVLDVS 238 (258)
Q Consensus 162 ~~~~~~Il-v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~~~~~~i~~SAT~-~~~~~~~~ 238 (258)
+.++ ..+|..+.+.+..-. .-.++++|+||-+=+.... .....+..++....+..-++.+|||. ++++.+.+
T Consensus 297 ----ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 297 ----FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred ----CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 2333 346666666554311 0124778999988765432 23455555565544544466789875 56778888
Q ss_pred HHhcC
Q psy4698 239 MKFMR 243 (258)
Q Consensus 239 ~~~~~ 243 (258)
+.|-.
T Consensus 372 ~~F~~ 376 (436)
T PRK11889 372 TNFKD 376 (436)
T ss_pred HHhcC
Confidence 77754
No 200
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00015 Score=64.58 Aligned_cols=73 Identities=27% Similarity=0.330 Sum_probs=54.3
Q ss_pred CCcHHHHHHhhhhhcC-----CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 69 KPSAIQQRAIIPCVRG-----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
.|.--|-.|+..+..| +.-.+-|.||||||++.. -++..+. .-+||++|.+.||.|.+..++.|.....
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~~-----rPtLV~AhNKTLAaQLy~Efk~fFP~Na 85 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKVQ-----RPTLVLAHNKTLAAQLYSEFKEFFPENA 85 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHhC-----CCeEEEecchhHHHHHHHHHHHhCcCcc
Confidence 5666677777666544 467889999999999853 2222222 2599999999999999999999987766
Q ss_pred ceEE
Q psy4698 144 VSCH 147 (258)
Q Consensus 144 ~~~~ 147 (258)
+...
T Consensus 86 VEYF 89 (663)
T COG0556 86 VEYF 89 (663)
T ss_pred eEEE
Confidence 5443
No 201
>KOG1805|consensus
Probab=97.62 E-value=0.0004 Score=65.90 Aligned_cols=136 Identities=17% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCc-EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHH
Q psy4698 52 MELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGND-VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQ 130 (258)
Q Consensus 52 ~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q 130 (258)
..+.+.+.+. -...++.-|+.|+-.++..++ .+|.|=+|+|||.+. -.++..+...+ .++|+.+-|..-+..
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~~g--kkVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVALG--KKVLLTSYTHSAVDN 728 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHHcC--CeEEEEehhhHHHHH
Confidence 3455555543 244788999999988776655 788899999999875 33444444433 378888888888877
Q ss_pred HHHHHHHhcCCCCceEEEEECCcc-----------------hHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 131 IQKVVIALGDFMSVSCHACIGGTI-----------------VRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
+.-.++.++.. +..+-.+.. .-...+...+...|+.||--.+..-+ +..+.++++
T Consensus 729 ILiKL~~~~i~----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~c 800 (1100)
T KOG1805|consen 729 ILIKLKGFGIY----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYC 800 (1100)
T ss_pred HHHHHhccCcc----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEE
Confidence 77777665422 111111111 11223344455788888865444332 234568999
Q ss_pred EEccchhhh
Q psy4698 194 VLDEADEML 202 (258)
Q Consensus 194 VvDE~h~~~ 202 (258)
|||||-.+.
T Consensus 801 IiDEASQI~ 809 (1100)
T KOG1805|consen 801 IIDEASQIL 809 (1100)
T ss_pred EEccccccc
Confidence 999999764
No 202
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.62 E-value=0.00019 Score=58.99 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=63.6
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCc-chHHHHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCcc
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGT-IVRDDIRKLEA-GAQVVVGTPGRVFDMISRGALSTKQIR 191 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~ 191 (258)
..+.+||+|.+-.-|-++.+.++.+.. -+..+.-++... ...++...+.. .++|.||||+++..++..+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 357899999987778888887777631 112333334443 45566666664 589999999999999999999999999
Q ss_pred EEEEccch
Q psy4698 192 MFVLDEAD 199 (258)
Q Consensus 192 ~lVvDE~h 199 (258)
+||+|--|
T Consensus 204 ~ivlD~s~ 211 (252)
T PF14617_consen 204 RIVLDWSY 211 (252)
T ss_pred EEEEcCCc
Confidence 99999876
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00077 Score=58.85 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=64.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc--HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT--RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
.|..+++.||||+|||+....-+.......+ ..++.+++-. +.-+. +.++.++...++.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ga~---EqL~~~a~~~gv~~~------------- 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRIGGH---EQLRIFGKILGVPVH------------- 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccccHH---HHHHHHHHHcCCceE-------------
Confidence 3567999999999999876443333322221 1245544422 21122 222233322233322
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH-HHHHHHHHhCCCCccEEEEEeeCCh-hHHHHH
Q psy4698 161 KLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK-DQIYDVFKHLNNDVQVILLSATMPA-DVLDVS 238 (258)
Q Consensus 161 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~-~~~~~~~~~l~~~~~~i~~SAT~~~-~~~~~~ 238 (258)
.+.+++.+...+. .+.+.++|+||.+-+....... ..+..+.........++.+|||... .+.+..
T Consensus 199 --------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 199 --------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred --------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 2223333333333 2345578999998643222222 2222222222233457888999844 456666
Q ss_pred HHhcC
Q psy4698 239 MKFMR 243 (258)
Q Consensus 239 ~~~~~ 243 (258)
+.|..
T Consensus 267 ~~f~~ 271 (374)
T PRK14722 267 QAYRS 271 (374)
T ss_pred HHHHH
Confidence 76643
No 204
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.0036 Score=55.91 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=69.8
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHh-hhccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQV-DQNIKECQALILA--PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l-~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
++.+++.||||+|||++....+.... ... +.++.++. |.+.-+. ..++.++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~-------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAV---EQLKTYAKIMGIPV-------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHH---HHHHHHHHHhCCce--------------
Confidence 45789999999999987654333322 222 23555555 3333222 22222222222222
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhC-CCCccEEEEEeeCC-hhHHHH
Q psy4698 161 KLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHL-NNDVQVILLSATMP-ADVLDV 237 (258)
Q Consensus 161 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l-~~~~~~i~~SAT~~-~~~~~~ 237 (258)
..+.+++.+...+.. +.+.++|+||.+-+.... .....+..++... .+....+.+|||.. .++.+.
T Consensus 282 -------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred -------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 122345555555543 235789999988653221 2334555555522 23345778899875 577777
Q ss_pred HHHhcC
Q psy4698 238 SMKFMR 243 (258)
Q Consensus 238 ~~~~~~ 243 (258)
.+.|-.
T Consensus 351 ~~~f~~ 356 (424)
T PRK05703 351 YKHFSR 356 (424)
T ss_pred HHHhCC
Confidence 777765
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.51 E-value=0.00072 Score=53.92 Aligned_cols=128 Identities=18% Similarity=0.246 Sum_probs=66.2
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec--cHHHH-HHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP--TRELA-QQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P--~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
-+++.||||+|||.+..--+...... +.++.+++- .|.=+ +|.....+.+ ++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 37899999999998865444333333 334555552 34333 3333333333 34333211111
Q ss_pred hcCCcEEEeChHHH-HHHHhcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 163 EAGAQVVVGTPGRV-FDMISRGALSTKQIRMFVLDEADEMLS-RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l-~~~l~~~~~~~~~l~~lVvDE~h~~~~-~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
.|..+ .+.+.. ...+++++|+||=+-+... .....++..++..+.+.--.+.+|||...+..+....
T Consensus 67 ---------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 67 ---------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp ---------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred ---------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 11111 122221 1123466888888865432 2345677777777767667889999986654333333
No 206
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.47 E-value=0.00049 Score=62.52 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=82.4
Q ss_pred HHHHHHhhhhh-----cC----CcEEEEcccCCCcchHhHHHHHHHh-hhccccceEEEEeccHHHHHHHHHHHHHhcCC
Q psy4698 72 AIQQRAIIPCV-----RG----NDVIAQAQSGTGKTATFSISILQQV-DQNIKECQALILAPTRELAQQIQKVVIALGDF 141 (258)
Q Consensus 72 ~~Q~~~~~~l~-----~g----~~~li~~~tGsGKT~~~l~~~l~~l-~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 141 (258)
|+|+-.+-.+. .| +.+++.-|-|-|||......++..+ ..+..+..+++.++++.-+...++.++.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 45666655544 12 2478888999999976654444444 34445668999999999999999998887644
Q ss_pred CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC--CCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC
Q psy4698 142 MSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG--ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN 219 (258)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~ 219 (258)
....... .. ..... ...-.|.....+..++.+... ...-.+..++|+||+|.+-+......+..-+.. .+
T Consensus 81 ~~~l~~~-~~-----~~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~-r~ 152 (477)
T PF03354_consen 81 SPELRKR-KK-----PKIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA-RP 152 (477)
T ss_pred Chhhccc-hh-----hhhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc-CC
Confidence 2111000 00 00000 011234333333333333332 222335689999999987554444444444444 34
Q ss_pred CccEEEEE
Q psy4698 220 DVQVILLS 227 (258)
Q Consensus 220 ~~~~i~~S 227 (258)
++++++.|
T Consensus 153 ~pl~~~IS 160 (477)
T PF03354_consen 153 NPLIIIIS 160 (477)
T ss_pred CceEEEEe
Confidence 55555543
No 207
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.41 E-value=0.0018 Score=66.50 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=74.6
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhh--hccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVD--QNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~--~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+++.|++++..++.+ +-++|.|..|+|||.+. -.++..+. ....+.+++.++||-.-+....+ . ++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~----Gi 1037 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----A----GV 1037 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----c----Cc
Confidence 6899999999998875 46999999999999874 33333332 12234578889999766654332 1 11
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH----hcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCC-
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMI----SRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN- 219 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l----~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~- 219 (258)
. -.|..+++... ..+......-++|||||+-++. ...+..+++.++.
T Consensus 1038 ~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~~~~ 1089 (1747)
T PRK13709 1038 D------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAG 1089 (1747)
T ss_pred c------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhcC
Confidence 1 01222222111 0111112234799999999652 3345555665553
Q ss_pred CccEEEEEee
Q psy4698 220 DVQVILLSAT 229 (258)
Q Consensus 220 ~~~~i~~SAT 229 (258)
.+++|++.-+
T Consensus 1090 garvVLVGD~ 1099 (1747)
T PRK13709 1090 GGRAVSSGDT 1099 (1747)
T ss_pred CCEEEEecch
Confidence 5788887654
No 208
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.40 E-value=0.0029 Score=56.27 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=25.3
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
..+++.|++|+|||... ..+.+.+.....+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 35899999999999865 44555554443345677774
No 209
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.40 E-value=0.00082 Score=63.58 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh-ccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ-NIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.+++-|.+++.+. ..+++|.|+.|||||.+...-+...+.. +....++++++-|+..+.+...++....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998653 4568888999999999987777776654 3344589999999999999988887653
No 210
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.011 Score=53.91 Aligned_cols=132 Identities=16% Similarity=0.254 Sum_probs=65.0
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA--PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI 159 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (258)
..|+.+.+.|++|+|||.....-+...... +.+.++.++. +++.-+.+ .++.++...++.+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~E---QLk~ya~iLgv~v~~----------- 412 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGRE---QLHSYGRQLGIAVHE----------- 412 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHH---HHHHhhcccCceeEe-----------
Confidence 346779999999999998763333222222 2223455554 23332222 222233222332211
Q ss_pred HHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCCCCccEEEEEeeCC-hhHHHH
Q psy4698 160 RKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLNNDVQVILLSATMP-ADVLDV 237 (258)
Q Consensus 160 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~~~~~~i~~SAT~~-~~~~~~ 237 (258)
+.+++.+...+.. +.+.++|+||.+-...... ....+..+. .......++.++++.. .++.+.
T Consensus 413 ----------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~Dl~ei 477 (559)
T PRK12727 413 ----------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEV 477 (559)
T ss_pred ----------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhHHHHH
Confidence 1133344444442 2357789999886542221 112222222 2223345777777764 466777
Q ss_pred HHHhcC
Q psy4698 238 SMKFMR 243 (258)
Q Consensus 238 ~~~~~~ 243 (258)
++.|..
T Consensus 478 i~~f~~ 483 (559)
T PRK12727 478 VRRFAH 483 (559)
T ss_pred HHHHHh
Confidence 776654
No 211
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.39 E-value=0.0014 Score=66.58 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=45.5
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhH--HHHHHHhhhccccceEEEEeccHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFS--ISILQQVDQNIKECQALILAPTRELAQQIQ 132 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l--~~~l~~l~~~~~~~~~lil~P~~~l~~q~~ 132 (258)
.+++-|++++..++.. +.++|.|..|+|||.+.- +.++..+. ...+.+++.++||-.-+....
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh-hccCceEEEEechHHHHHHHH
Confidence 7899999999998865 679999999999998742 22222222 223457888999877665553
No 212
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.39 E-value=0.0038 Score=56.31 Aligned_cols=126 Identities=11% Similarity=0.218 Sum_probs=64.9
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+.+++.||+|+|||... .++...+.....+.+++++.. ..+..+....++.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~--------------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN--------------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc---------------------------
Confidence 45899999999999865 344444444433446666643 3444433332210
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCC-CCccEEEEEeeCChhHH---HHHH
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLN-NDVQVILLSATMPADVL---DVSM 239 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~---~~~~ 239 (258)
+ +.+.+...+ .+.++||+||+|.+.... ....+..++..+. ...++++.|...|..+. .-+.
T Consensus 200 ~------~~~~~~~~~-------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 200 N------TMEEFKEKY-------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred C------cHHHHHHHH-------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 0 112222222 246699999999874432 2234444444432 33455554444444433 2334
Q ss_pred HhcCCCeEEEecC
Q psy4698 240 KFMRDPIKILVKK 252 (258)
Q Consensus 240 ~~~~~~~~v~~~~ 252 (258)
..+.....+.+..
T Consensus 267 SRl~~gl~v~i~~ 279 (450)
T PRK00149 267 SRFEWGLTVDIEP 279 (450)
T ss_pred hHhcCCeeEEecC
Confidence 4555445555543
No 213
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.38 E-value=0.00015 Score=56.47 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=54.6
Q ss_pred EEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCc
Q psy4698 88 IAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQ 167 (258)
Q Consensus 88 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (258)
++.|+-|.|||.+.=+.+...+.... .+++|.+|+.+-+...++.+..-.+..+.+.... ............+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKK---KRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhccccccccccc---cccccccccccccce
Confidence 57899999999876444433333322 5799999999988888876654433333222000 000000001112356
Q ss_pred EEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 168 VVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 168 Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
|-+..|+.+... ....+++|||||=.+ -...+..++ .....++||.|+..
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll----~~~~~vv~stTi~G 125 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLL----RRFPRVVFSTTIHG 125 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH----CCSSEEEEEEEBSS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHH----hhCCEEEEEeeccc
Confidence 777788665421 123579999999866 233334443 33446788888765
No 214
>KOG1001|consensus
Probab=97.37 E-value=0.0012 Score=61.83 Aligned_cols=155 Identities=21% Similarity=0.146 Sum_probs=90.5
Q ss_pred HHHHHHhhhhhcC-----CcEEEEcccCCCcchHhHHHHHHHhhhcc------ccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 72 AIQQRAIIPCVRG-----NDVIAQAQSGTGKTATFSISILQQVDQNI------KECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 72 ~~Q~~~~~~l~~g-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
..|...+.....- +-.|+.-..|-|||...+..++..-.... ...-.+++||. ++..||...+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCC
Confidence 4555555443322 34788889999999887655544332222 23357788874 566777776766666
Q ss_pred CCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCC
Q psy4698 141 FMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNND 220 (258)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~ 220 (258)
...+.+..++| +..-....++++|+++|++.+-. ..+.--..-.+|+||+|.+.+. ..+.......+...
T Consensus 214 ~~~l~v~v~~g----r~kd~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~--~tq~~~a~~~L~a~ 283 (674)
T KOG1001|consen 214 EDKLSIYVYHG----RTKDKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNK--DTQIFKAVCQLDAK 283 (674)
T ss_pred ccceEEEEecc----cccccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCc--chHhhhhheeeccc
Confidence 66778888887 11111223458899999976553 2111122346999999988544 33344444445444
Q ss_pred ccEEEEEeeC-ChhHHHHH
Q psy4698 221 VQVILLSATM-PADVLDVS 238 (258)
Q Consensus 221 ~~~i~~SAT~-~~~~~~~~ 238 (258)
. .-.+|+|. -+.+.++.
T Consensus 284 ~-RWcLtgtPiqn~~~~ly 301 (674)
T KOG1001|consen 284 Y-RWCLTGTPIQNNLDELY 301 (674)
T ss_pred e-eeeecCChhhhhHHHHH
Confidence 4 44556664 33444433
No 215
>KOG1016|consensus
Probab=97.36 E-value=0.0042 Score=58.05 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHHH---CCCCCCcHHHHHHhhhhh--cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 52 MELSEELLRGIYA---YGFEKPSAIQQRAIIPCV--RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 52 ~~~~~~l~~~l~~---~~~~~~~~~Q~~~~~~l~--~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
+-+.+.+.+.++- .|+..+++--.+.+.... +|..+|+...+|-|||+..+- .+.-+..-.....+|+|+|-..
T Consensus 245 iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVis-F~diflRhT~AKtVL~ivPiNT 323 (1387)
T KOG1016|consen 245 IFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVIS-FSDIFLRHTKAKTVLVIVPINT 323 (1387)
T ss_pred eeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEee-hhHHHhhcCccceEEEEEehHH
Confidence 3456677666643 245556666666665543 456799999999999987643 3333333333447999999766
Q ss_pred HHHHHHHHHHHhcCC----C-----CceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHhcC----------
Q psy4698 127 LAQQIQKVVIALGDF----M-----SVSCHACIGGTIVRDDIRKLE----AGAQVVVGTPGRVFDMISRG---------- 183 (258)
Q Consensus 127 l~~q~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~---------- 183 (258)
|-+ |...+..+... . .+.+..+.++........... ....|+..-++.+.-++...
T Consensus 324 lQN-WlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt 402 (1387)
T KOG1016|consen 324 LQN-WLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKT 402 (1387)
T ss_pred HHH-HHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCcccc
Confidence 544 34444443322 2 244555555544333222211 12356666666543222110
Q ss_pred --C-----C-------------------CCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHH
Q psy4698 184 --A-----L-------------------STKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDV 237 (258)
Q Consensus 184 --~-----~-------------------~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~ 237 (258)
. + .-..-+++|+||-|++ .+....+-.-++.++...++++....+-+++.+.
T Consensus 403 ~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrI--KN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEY 480 (1387)
T KOG1016|consen 403 LKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRI--KNITAEISMALKAIRTRRRIVLTGYPLQNNLLEY 480 (1387)
T ss_pred ccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCcee--ccchHHHHHHHHHhhhceeEEEeccccccchHHH
Confidence 0 0 0122459999999998 4445566666777778888999888888775543
No 216
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.35 E-value=0.0033 Score=47.75 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=24.9
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
+++.|++|+|||......+..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcch
Confidence 689999999999876444333322 23467777765443
No 217
>PF13173 AAA_14: AAA domain
Probab=97.32 E-value=0.0033 Score=46.37 Aligned_cols=38 Identities=13% Similarity=0.303 Sum_probs=24.7
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
+-.+|++||+|.+ .+....+..+...- ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEEEEccc
Confidence 4558999999987 44566666666644 45656554433
No 218
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0012 Score=63.35 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
...+++||||+|.|.. .-.+.+.++++..+..+.+|+.+ |-+..+...++..
T Consensus 119 ~~~KV~IIDEad~lt~-~a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~TIrSR 170 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP-QGFNALLKIVEEPPEHLKFIFAT-TEPDKVIGTIRSR 170 (824)
T ss_pred CCceEEEEechhhcCH-HHHHHHHHHHhCCCCCeEEEEEe-CChhhhhHHHHhh
Confidence 4678999999998753 34556667777766767666655 4443444434433
No 219
>PRK06893 DNA replication initiation factor; Validated
Probab=97.30 E-value=0.001 Score=54.46 Aligned_cols=45 Identities=20% Similarity=0.470 Sum_probs=28.1
Q ss_pred CCccEEEEccchhhhccC-cHHHHHHHHHhCCC-CccEEEEEeeCCh
Q psy4698 188 KQIRMFVLDEADEMLSRG-FKDQIYDVFKHLNN-DVQVILLSATMPA 232 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~~-~~~~i~~SAT~~~ 232 (258)
.+.++||+||+|.+.... ....+..++..+.. ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 356799999999875332 23345555555433 3456777777644
No 220
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.28 E-value=0.00096 Score=63.84 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=73.5
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCC------hhHHHH
Q psy4698 164 AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMP------ADVLDV 237 (258)
Q Consensus 164 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~------~~~~~~ 237 (258)
....|++.||..|..=+-.+.+.+..+..|||||||++.....+..+.++.+.-++..-+.+|||+.. ..+++.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 34689999999988777777889999999999999999988899999999999888889999999975 357777
Q ss_pred HHHhcCCCeEEEe
Q psy4698 238 SMKFMRDPIKILV 250 (258)
Q Consensus 238 ~~~~~~~~~~v~~ 250 (258)
++...-..+.+..
T Consensus 86 mk~L~i~~v~l~p 98 (814)
T TIGR00596 86 MRNLFLRHVYLWP 98 (814)
T ss_pred HHHhCcCeEEEeC
Confidence 8777666666644
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.0037 Score=53.91 Aligned_cols=131 Identities=13% Similarity=0.270 Sum_probs=68.4
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.++++++.|++|+|||..+. ++...+... +..++++. ...+........ +. .. .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~--g~~V~y~t-~~~l~~~l~~~~--~~------------~~--~------ 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR--GKSVIYRT-ADELIEILREIR--FN------------ND--K------ 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC--CCeEEEEE-HHHHHHHHHHHH--hc------------cc--h------
Confidence 45789999999999998653 444444433 23565554 344444332210 00 00 0
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc-HHHHHHHHHhC-CCCccEEEEEeeCChhHHH----
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF-KDQIYDVFKHL-NNDVQVILLSATMPADVLD---- 236 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~-~~~~~~~~~~l-~~~~~~i~~SAT~~~~~~~---- 236 (258)
.....++ .+.++++||+||.+......+ ...+..++... .....+|+.|.--+.++.+
T Consensus 236 ---------~~~~~~~-------~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~e 299 (329)
T PRK06835 236 ---------ELEEVYD-------LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSE 299 (329)
T ss_pred ---------hHHHHHH-------HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhH
Confidence 0000011 234578999999986533322 24444555443 2334566655554555533
Q ss_pred -HHHHhcCCCeEEEecCCcc
Q psy4698 237 -VSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 237 -~~~~~~~~~~~v~~~~~~~ 255 (258)
+..........|.+.+++.
T Consensus 300 ri~SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 300 RISSRLLGNFTLLKFYGEDI 319 (329)
T ss_pred HHHHHHHcCCEEEEecCcCh
Confidence 4444555666777766653
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=97.26 E-value=0.0011 Score=54.34 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=27.6
Q ss_pred CccEEEEccchhhhcc-CcHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 189 QIRMFVLDEADEMLSR-GFKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
+.+++|+|++|.+... .....+..++..+...-..++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4568999999976433 2345566677665544445666666543
No 223
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.25 E-value=0.0016 Score=62.12 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh-ccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ-NIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
..+++-|++++.+ ...+++|.|+.|||||.+..--+...+.. +....++++++-|+..|.+..+++.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3689999999965 34578999999999999977666666654 3344589999999999999999887764
No 224
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.25 E-value=0.0051 Score=55.32 Aligned_cols=128 Identities=14% Similarity=0.283 Sum_probs=66.0
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+.+++.||+|+|||..+ .++.+.+.....+.+++|+... .+..+....++ .
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~~-~f~~~~~~~~~---------------------------~ 181 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMK---------------------------E 181 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHHh---------------------------c
Confidence 35999999999999765 3444455444444577777542 22222222110 0
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCCC-CccEEEEEeeCChhHHHHH---H
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLNN-DVQVILLSATMPADVLDVS---M 239 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~~-~~~~i~~SAT~~~~~~~~~---~ 239 (258)
+ +.+.+...+. .+.++|++||+|.+.+.. ....+..++..+.. ..++|+.|..-|.++..+. .
T Consensus 182 ~------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 182 G------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred c------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 0 1112222111 246799999999875442 22344445544432 3455555555555554442 2
Q ss_pred HhcCCCeEEEecCC
Q psy4698 240 KFMRDPIKILVKKE 253 (258)
Q Consensus 240 ~~~~~~~~v~~~~~ 253 (258)
.-+.-...+.+...
T Consensus 250 SR~~~gl~v~i~~p 263 (440)
T PRK14088 250 SRFQMGLVAKLEPP 263 (440)
T ss_pred hHHhcCceEeeCCC
Confidence 23344455555433
No 225
>CHL00181 cbbX CbbX; Provisional
Probab=97.24 E-value=0.0063 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=17.6
Q ss_pred cCCcEEEEcccCCCcchHhHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSIS 104 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~ 104 (258)
.|.++++.||+|+|||.++-..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3557999999999999887433
No 226
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.24 E-value=0.0024 Score=51.87 Aligned_cols=124 Identities=15% Similarity=0.241 Sum_probs=68.3
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
.+++.|++|+|||-. +.++...+.....+.+++|+... +........++ .
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~---------------------------~- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALR---------------------------D- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHH---------------------------T-
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHH---------------------------c-
Confidence 489999999999984 45666666655556677777542 33333222221 1
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCC-CCccEEEEEeeCChhHH---HHHHH
Q psy4698 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLN-NDVQVILLSATMPADVL---DVSMK 240 (258)
Q Consensus 166 ~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~---~~~~~ 240 (258)
...+.+.+. +...+++++|++|.+.+.. ....+..++..+. ...++|+.|...|.++. .-+..
T Consensus 86 -----~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S 153 (219)
T PF00308_consen 86 -----GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS 153 (219)
T ss_dssp -----TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH
T ss_pred -----ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh
Confidence 122222222 2357799999999875432 2344555555543 34577777767676543 22334
Q ss_pred hcCCCeEEEec
Q psy4698 241 FMRDPIKILVK 251 (258)
Q Consensus 241 ~~~~~~~v~~~ 251 (258)
.+.-.+.+.+.
T Consensus 154 Rl~~Gl~~~l~ 164 (219)
T PF00308_consen 154 RLSWGLVVELQ 164 (219)
T ss_dssp HHHCSEEEEE-
T ss_pred hHhhcchhhcC
Confidence 44445555543
No 227
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0023 Score=57.56 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.2
Q ss_pred cEEEEcccCCCcchHhHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~ 105 (258)
.+++.||.|+|||.++...+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999874443
No 228
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.23 E-value=0.0019 Score=61.20 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=54.3
Q ss_pred CcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 70 PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
+++-|.+++.+ ...+++|.|+.|||||.+..--+...+... ....++++++.|+..+.+....+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889999865 345799999999999999887777777543 344589999999999999988887653
No 229
>PRK09183 transposase/IS protein; Provisional
Probab=97.19 E-value=0.0059 Score=50.90 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.5
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+..|.++++.||+|+|||..+........ . .+.+++++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~--~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R--AGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEe
Confidence 56778999999999999976543332222 2 233566553
No 230
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.19 E-value=0.0018 Score=57.44 Aligned_cols=147 Identities=16% Similarity=0.260 Sum_probs=79.9
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH-HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE-LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
-.++.|+.|||||.+....++..+.....+.+++++-++.. +....+..++......++....-...... .......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~ 80 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNT 80 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCC
Confidence 36889999999999888777777666433468999988866 55555566655443333321111111100 0001112
Q ss_pred CCcEEEeCh-HHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC--CCccEEEEEeeCChhHHHHHHHh
Q psy4698 165 GAQVVVGTP-GRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN--NDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 165 ~~~Ilv~Tp-~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~--~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
+..|++..- +...+ ++ ....+.++.+|||..+... .+..++.+++ ...+.+++|.+.+..-.-+.+.|
T Consensus 81 g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred CeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHHHHHH
Confidence 455666544 22221 11 2233689999999987322 3334444443 22224777888655333444444
Q ss_pred cC
Q psy4698 242 MR 243 (258)
Q Consensus 242 ~~ 243 (258)
..
T Consensus 152 ~~ 153 (396)
T TIGR01547 152 IE 153 (396)
T ss_pred Hh
Confidence 43
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=97.18 E-value=0.0045 Score=56.85 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=74.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc--eE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV--SC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~--~~ 146 (258)
.+.++|...+..+..++-.++..+-..|||.+....++...... .+.++++++|+...+...++.++........ ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 57899999998776566667888889999988764444333322 3458999999999999988888765432210 10
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~ 202 (258)
...... ...-.+.+|..|.+.|.+. +...-.+..++++||+|.+.
T Consensus 138 ~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 138 GIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred ceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC
Confidence 000000 0000124566665555321 11222356689999999763
No 232
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.18 E-value=0.0023 Score=60.49 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=54.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
..+++-|++++.. ...+++|.|+.|||||.+..--+...+... ..+.++++++.++..+....+++....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999999953 345689999999999998866665555443 234589999999999999988876643
No 233
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.16 E-value=0.0057 Score=64.17 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
.+++-|.+++..++.. +-.+|.|+.|+|||.+. -.+...+... +.+++.++||..-+....+... ..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g-------~~- 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQ--GYEIQIITAGSLSAQELRQKIP-------RL- 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhc-------ch-
Confidence 5889999999998775 56999999999999874 3444444433 4589999999876666554321 00
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC-CCCccEEE
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL-NNDVQVIL 225 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~i~ 225 (258)
......+...+..+ .-..|...++ .....+..-++|||||+.++ -...+..+++.. +.+.++|+
T Consensus 498 -----A~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 498 -----ASTFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKL----SNNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred -----hhhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCC----CHHHHHHHHHHHhhcCCEEEE
Confidence 00111111111111 1122333332 22223456789999999966 244556666655 35778887
Q ss_pred EEee
Q psy4698 226 LSAT 229 (258)
Q Consensus 226 ~SAT 229 (258)
+.-+
T Consensus 563 vGD~ 566 (1960)
T TIGR02760 563 LNDS 566 (1960)
T ss_pred EcCh
Confidence 7554
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.021 Score=47.14 Aligned_cols=68 Identities=7% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCCccEEEEccchhhhccCcHH-HHHHHHHh-CCCCccEEEEEeeCChhHHHHH-----HHh-cCCCeEEEecCCc
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKD-QIYDVFKH-LNNDVQVILLSATMPADVLDVS-----MKF-MRDPIKILVKKEE 254 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~-~~~~~~~~-l~~~~~~i~~SAT~~~~~~~~~-----~~~-~~~~~~v~~~~~~ 254 (258)
+.++++|||||++......+.. .+..++.. ......+|+.|.--+.++.+.. ... +.+...|.++.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 3467899999999754333333 33445443 3345667777766555555432 222 3566677766554
No 235
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.14 E-value=0.0023 Score=61.12 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhh-ccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQ-NIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.+++-|++++.+. ..+++|.|+.|||||.+...-+...+.. +....++++++-|+..+.+..+++.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5899999999653 4578999999999999887666666653 3344589999999999999999887764
No 236
>KOG0298|consensus
Probab=97.14 E-value=0.0024 Score=62.30 Aligned_cols=143 Identities=14% Similarity=0.072 Sum_probs=90.1
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhh-----------cc----ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQ-----------NI----KECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~-----------~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
.|+.++..-..|+|||...+...+..... .+ ..+-+|||||. ++..||+..+..-.... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 45667888899999998876555443211 11 12358999994 67789999887766543 5666
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--------------CCCC----Ccc--EEEEccchhhhccCcH
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA--------------LSTK----QIR--MFVLDEADEMLSRGFK 207 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--------------~~~~----~l~--~lVvDE~h~~~~~~~~ 207 (258)
.+.|-....-........+||+++|++.|..=+.+.. ..++ .+. -|++|||+++- . ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve-s-ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE-S-SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc-c-hH
Confidence 6666544322222333458999999999876543321 1110 111 48999999663 3 45
Q ss_pred HHHHHHHHhCCCCccEEEEEeeC
Q psy4698 208 DQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 208 ~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
....+.+.+++. .-..++|+|.
T Consensus 529 S~~a~M~~rL~~-in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA-INRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHhhh-hceeeecCCc
Confidence 555666666654 3478889994
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.13 E-value=0.0066 Score=47.61 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=33.1
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
++|.|++|+|||...+..+...+.. +.+++|++. .+...+..+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6899999999998876655555533 346888864 344556566565553
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.12 E-value=0.0064 Score=49.31 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.2
Q ss_pred cCCcEEEEcccCCCcchHhHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSI 103 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~ 103 (258)
.+.++++.|++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456799999999999987643
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.12 E-value=0.0034 Score=51.53 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=23.2
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+.++++.||+|+|||..... +.+.+... +.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~~--~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQR--GRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHhC--CCeEEEEEH
Confidence 35799999999999976532 33333322 345666643
No 240
>PRK08727 hypothetical protein; Validated
Probab=97.11 E-value=0.003 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=22.3
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
..+++.|++|+|||-... ++...+... +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCcEEEEe
Confidence 349999999999996543 333333332 23566664
No 241
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.10 E-value=0.013 Score=48.79 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.7
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999998763
No 242
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.10 E-value=0.0028 Score=63.91 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=79.0
Q ss_pred CcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC-CCCceEEE
Q psy4698 70 PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD-FMSVSCHA 148 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~-~~~~~~~~ 148 (258)
.++-|.+++. ..+++++|.|+.|||||.+..--++..+..+..-.++++++=|+..+.+...++.+... ...-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5788999996 46889999999999999998877777776553334799999999999998877766321 1110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCc--cEEEEccchh
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQI--RMFVLDEADE 200 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l--~~lVvDE~h~ 200 (258)
........+.+..-...-|+|...+...+-+.....-++ .+=|.||...
T Consensus 76 ---~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ---EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ---CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 001111112222224578999999875443322222122 3456888774
No 243
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.09 E-value=0.0042 Score=55.36 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhH
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l 102 (258)
.+.......+..+..++++++.|++|+|||..+-
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3455666677778889999999999999998763
No 244
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.05 E-value=0.0061 Score=53.89 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=23.5
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL 121 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil 121 (258)
.+++|.|++|+|||.+. ..++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEE
Confidence 56999999999999875 3344444433323445555
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=97.04 E-value=0.01 Score=51.04 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=24.7
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
..+++|+||+|.+... ....+.+.+...+..+++++.+
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEe
Confidence 4789999999987543 3445555666555556555543
No 246
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.03 E-value=0.0065 Score=49.48 Aligned_cols=43 Identities=9% Similarity=0.378 Sum_probs=26.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCcc-EEEEEeeCCh
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQ-VILLSATMPA 232 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~-~i~~SAT~~~ 232 (258)
+.++||+||+|.+.. .....+..++........ +++++++.+.
T Consensus 90 ~~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDD-AQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCc-hHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 456899999998643 334455555655443333 5677776543
No 247
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0066 Score=55.00 Aligned_cols=45 Identities=13% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADV 234 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~ 234 (258)
.+.+++||||+|.+... ..+.+.+.+..-++...+|+.+ |-+..+
T Consensus 115 ~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIlat-te~~Kl 159 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFILAT-TEVKKI 159 (491)
T ss_pred CCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEEEe-CChHHH
Confidence 56889999999977443 3344555566555555555544 433333
No 248
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.015 Score=48.69 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=25.0
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
.+.++++.|++|+|||..+ .++...+... .+..++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~-~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK-KGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh-cCceEEEEE
Confidence 3578999999999999765 3444444433 133566665
No 249
>KOG0953|consensus
Probab=97.01 E-value=0.00093 Score=59.96 Aligned_cols=100 Identities=23% Similarity=0.197 Sum_probs=64.2
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
-++-+|||.||||.-+ ++++.... +.+|-.|.+.||.++++.+...+ +.|..+.|.......-. .+.
T Consensus 193 Ii~H~GPTNSGKTy~A----Lqrl~~ak---sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~~~ 259 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA----LQRLKSAK---SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--GNP 259 (700)
T ss_pred EEEEeCCCCCchhHHH----HHHHhhhc---cceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--CCc
Confidence 3677899999999765 45554432 68999999999999999987775 44444444433222111 122
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 166 ~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
++.+=||.++.- --..++..|+||+++|-+...
T Consensus 260 a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~R 292 (700)
T KOG0953|consen 260 AQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSR 292 (700)
T ss_pred ccceEEEEEEee--------cCCceEEEEehhHHhhcCccc
Confidence 566777775532 112356778888887765543
No 250
>KOG1131|consensus
Probab=97.01 E-value=0.0071 Score=54.18 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHhhh----hhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc-ccceEEEEeccHHHHHHHHHHH
Q psy4698 67 FEKPSAIQQRAIIP----CVRGNDVIAQAQSGTGKTATFSISILQQVDQNI-KECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 67 ~~~~~~~Q~~~~~~----l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~-~~~~~lil~P~~~l~~q~~~~~ 135 (258)
+...+|-|-+-+.. +-.+.++++.+|+|+|||.+.+-.++....... ...+.+|-+-|..-++.....+
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 44556666544433 335567999999999999886544433222211 2234555554443333333333
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.0051 Score=58.07 Aligned_cols=39 Identities=13% Similarity=0.329 Sum_probs=25.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
...+++||||+|.|... -.+.+.+.+..-+.++.+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEEEEEE
Confidence 35789999999987543 3445556666655555555543
No 252
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.0034 Score=56.56 Aligned_cols=110 Identities=15% Similarity=0.278 Sum_probs=59.6
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+.+++.|++|+|||... .++.+.+.....+.+++|+.. ..+.......+...
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~-------------------------- 193 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKT-------------------------- 193 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHh--------------------------
Confidence 35899999999999654 455555554444557777655 44444443322110
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhCC-CCccEEEEEeeCChhH
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLN-NDVQVILLSATMPADV 234 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~ 234 (258)
. +.+..... ...+.++||+||+|.+... .....+..++..+. ...|+|+.|-..|..+
T Consensus 194 --~------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 194 --H------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --h------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 0 11111111 1235679999999976432 22344555555443 3345666555555444
No 253
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.98 E-value=0.013 Score=42.88 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=13.4
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999875
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.98 E-value=0.0072 Score=52.13 Aligned_cols=39 Identities=10% Similarity=0.325 Sum_probs=25.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
...++||+||+|.+.. .....+...+...+..+++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 4567999999997743 23445666666666666666544
No 255
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.95 E-value=0.011 Score=55.67 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=86.8
Q ss_pred HHHHHCCCCCCcHHHHHHhhhhhcCC--cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 60 RGIYAYGFEKPSAIQQRAIIPCVRGN--DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 60 ~~l~~~~~~~~~~~Q~~~~~~l~~g~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
..+..........-|.+.+..+...+ -+++.|.-|.|||.+.=+++....... ...+++|.+|+.+-++..+..+.+
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-GSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHHHH
Confidence 33444444445555555666666553 599999999999988766553222222 246899999999999988887665
Q ss_pred hcCCCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHh
Q psy4698 138 LGDFMSVSCHACIGGTIVRDDIRKL-EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKH 216 (258)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~ 216 (258)
-....+........... ..... .....|=+-.|.... ..-+++|||||=.+ -...+.++++.
T Consensus 284 ~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~ 346 (758)
T COG1444 284 GLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRR 346 (758)
T ss_pred hHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhh
Confidence 44444433222111100 00000 111234455564322 11569999999865 23444444443
Q ss_pred CCCCccEEEEEeeCCh
Q psy4698 217 LNNDVQVILLSATMPA 232 (258)
Q Consensus 217 l~~~~~~i~~SAT~~~ 232 (258)
.+.++||.|+..
T Consensus 347 ----~~rv~~sTTIhG 358 (758)
T COG1444 347 ----FPRVLFSTTIHG 358 (758)
T ss_pred ----cCceEEEeeecc
Confidence 356888999865
No 256
>PRK08116 hypothetical protein; Validated
Probab=96.95 E-value=0.016 Score=48.64 Aligned_cols=128 Identities=10% Similarity=0.190 Sum_probs=64.4
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
.+++.|++|+|||..+. ++.+.+... +..++++ +...+...+...+ ... +.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~-~~~~ll~~i~~~~---~~~----------~~------------ 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFV-NFPQLLNRIKSTY---KSS----------GK------------ 166 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEE-EHHHHHHHHHHHH---hcc----------cc------------
Confidence 49999999999997653 455555443 2345554 3344443332211 000 00
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhC-CCCccEEEEEeeCChhHHH-----HH
Q psy4698 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHL-NNDVQVILLSATMPADVLD-----VS 238 (258)
Q Consensus 166 ~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l-~~~~~~i~~SAT~~~~~~~-----~~ 238 (258)
.+...+.+. +.+.++||+||++.-... .....+..++... ....++|+.|..-+.++.. +.
T Consensus 167 -----~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~ 234 (268)
T PRK08116 167 -----EDENEIIRS-------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIY 234 (268)
T ss_pred -----ccHHHHHHH-------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHH
Confidence 011112221 345679999999632111 1234445555432 3445677777666666543 33
Q ss_pred HHhcCCCeEEEecCCc
Q psy4698 239 MKFMRDPIKILVKKEE 254 (258)
Q Consensus 239 ~~~~~~~~~v~~~~~~ 254 (258)
.........|.+.+++
T Consensus 235 sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 235 DRILEMCTPVENEGKS 250 (268)
T ss_pred HHHHHcCEEEEeeCcC
Confidence 3333444555555543
No 257
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.026 Score=49.44 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=19.6
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQN 112 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~ 112 (258)
.|+++.|+||+|||.+.. .+++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 369999999999998864 444444443
No 258
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0091 Score=53.06 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc-HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT-RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK 161 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
.|+.+.+.||||+|||+.....+-..+...+...-.++.+.+ +.-+.++.. .++...++.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~---~~a~ilGvp~~~------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLR---IYGKLLGVSVRS------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHH---HHHHHcCCceec-------------
Confidence 355699999999999987643332222222111123444443 222222222 233222333221
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhCCCCccEEEEEeeC-ChhHHHHHH
Q psy4698 162 LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLNNDVQVILLSATM-PADVLDVSM 239 (258)
Q Consensus 162 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~~~~~~i~~SAT~-~~~~~~~~~ 239 (258)
+.++..+...+. .+.+.+.+++|.+=+.... .....+..+.....+.-.++.+|||. ..++.+..+
T Consensus 254 --------v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 254 --------IKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred --------CCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 122333222222 2345667888876422111 11222222222122334567889997 456777777
Q ss_pred HhcC
Q psy4698 240 KFMR 243 (258)
Q Consensus 240 ~~~~ 243 (258)
.|-.
T Consensus 322 ~f~~ 325 (420)
T PRK14721 322 AYQG 325 (420)
T ss_pred HhcC
Confidence 7654
No 259
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.93 E-value=0.0089 Score=55.44 Aligned_cols=133 Identities=13% Similarity=0.180 Sum_probs=80.6
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCC-Cce-EEEEECCcchHHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFM-SVS-CHACIGGTIVRDDIRKL 162 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 162 (258)
+-.++..|--.|||.... +++..+.....+.++++++|.+..++..++.++...... .-. +....| ... ....
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEe
Confidence 457888899999999766 666656655567799999999999999998887754321 101 111111 100 0011
Q ss_pred hcC--CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC-CCCccEEEEEeeCCh
Q psy4698 163 EAG--AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL-NNDVQVILLSATMPA 232 (258)
Q Consensus 163 ~~~--~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~i~~SAT~~~ 232 (258)
.+| ..|.+.+. -..+..+-.+++++|||||+.+-+. .+..++-.+ ..++++|++|.|-+.
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 122 24444422 1223445567899999999977433 233333222 247899999988654
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.92 E-value=0.0074 Score=50.51 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=28.9
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+..|..+++.|++|+|||......+...+... +.+++|++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 45667899999999999987665555444331 346888764
No 261
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.029 Score=46.97 Aligned_cols=130 Identities=16% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec--c-HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP--T-RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P--~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
+..+++.|++|+|||..+...+.. +.. .+.++.++.- . .....|+..... ..++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~----~~~~---------------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKKTVGFITTDHSRIGTVQQLQDYVK----TIGF---------------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHH--cCCeEEEEecCCCCHHHHHHHHHHhh----hcCc----------------
Confidence 357999999999999876543332 222 1234554443 2 234445443332 2222
Q ss_pred HHhcCCcEEE-eChHHHHHHHhcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHHhCCCCccEEEEEeeC-ChhHHHH
Q psy4698 161 KLEAGAQVVV-GTPGRVFDMISRGALSTKQIRMFVLDEADEMLS-RGFKDQIYDVFKHLNNDVQVILLSATM-PADVLDV 237 (258)
Q Consensus 161 ~~~~~~~Ilv-~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~-~~~~~~~~~~~~~l~~~~~~i~~SAT~-~~~~~~~ 237 (258)
.+.. .+++.+.+.+..- ....+++++++|-+=+... ......+..++....++..++.+|||. ..++.+.
T Consensus 132 ------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 132 ------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred ------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 2222 2454444444321 0123578899999876532 233455556666555555577799986 5588888
Q ss_pred HHHhcC
Q psy4698 238 SMKFMR 243 (258)
Q Consensus 238 ~~~~~~ 243 (258)
++.|-.
T Consensus 205 ~~~f~~ 210 (270)
T PRK06731 205 ITNFKD 210 (270)
T ss_pred HHHhCC
Confidence 888754
No 262
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0063 Score=57.72 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=66.3
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc--HH-HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT--RE-LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~--~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
|+-+.+.||||+|||++...-+-......+ +.++.++.-. +. ..+|+ +.++...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv-------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIGALEQL----RIYGRILGVPV-------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchHHHHHH----HHHHHhCCCCc--------------
Confidence 345899999999999876433322222221 1245554432 21 22332 22332222222
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhCCCCccEEEEEeeCC-hhHHHHH
Q psy4698 161 KLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLNNDVQVILLSATMP-ADVLDVS 238 (258)
Q Consensus 161 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~~~~~~i~~SAT~~-~~~~~~~ 238 (258)
..+.+|+.+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...++.+|||.- .++.+..
T Consensus 246 -------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 246 -------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred -------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 123366666555553 335578888877654322 222333333333344556778888864 4566676
Q ss_pred HHhc
Q psy4698 239 MKFM 242 (258)
Q Consensus 239 ~~~~ 242 (258)
+.|-
T Consensus 315 ~~f~ 318 (767)
T PRK14723 315 HAYR 318 (767)
T ss_pred HHHh
Confidence 6664
No 263
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0058 Score=52.33 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=30.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVS 238 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~ 238 (258)
.+.+++++||||.|.. +..+.+.+.+..-+.++.+++.+. -+..+...+
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n-~~~~il~tI 156 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN-DPSKILPTI 156 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC-Chhhccchh
Confidence 5788999999998854 344555555555555555555544 444444433
No 264
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0063 Score=58.45 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
...+++||||+|+|. ....+.+.+.+..-+..+++|+. .|-+..+..
T Consensus 118 gk~KViIIDEAh~LT-~eAqNALLKtLEEPP~~vrFILa-TTe~~kLl~ 164 (944)
T PRK14949 118 GRFKVYLIDEVHMLS-RSSFNALLKTLEEPPEHVKFLLA-TTDPQKLPV 164 (944)
T ss_pred CCcEEEEEechHhcC-HHHHHHHHHHHhccCCCeEEEEE-CCCchhchH
Confidence 357799999999873 33445555666655556666654 444444433
No 265
>PF05729 NACHT: NACHT domain
Probab=96.91 E-value=0.028 Score=42.75 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=31.6
Q ss_pred EEEEccchhhhccC-------cHHHHHHHHHh-CCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 192 MFVLDEADEMLSRG-------FKDQIYDVFKH-LNNDVQVILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 192 ~lVvDE~h~~~~~~-------~~~~~~~~~~~-l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
+||+|-+|++.... ....+..++.. +++++++++.|.+ ....+ ....+.....+.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~--~~~~~-~~~~~~~~~~~~l 147 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP--RAFPD-LRRRLKQAQILEL 147 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC--ChHHH-HHHhcCCCcEEEE
Confidence 59999999886532 22334455554 4566776666554 33333 4455555555544
No 266
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.90 E-value=0.0026 Score=49.08 Aligned_cols=50 Identities=16% Similarity=0.398 Sum_probs=31.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
...+++|+||+|.|. ....+.+.+.+..-+.++.+|+.|.. +..+...++
T Consensus 101 ~~~KviiI~~ad~l~-~~a~NaLLK~LEepp~~~~fiL~t~~-~~~il~TI~ 150 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT-EEAQNALLKTLEEPPENTYFILITNN-PSKILPTIR 150 (162)
T ss_dssp SSSEEEEEETGGGS--HHHHHHHHHHHHSTTTTEEEEEEES--GGGS-HHHH
T ss_pred CCceEEEeehHhhhh-HHHHHHHHHHhcCCCCCEEEEEEECC-hHHChHHHH
Confidence 468899999999874 33566677777776666766655544 444444433
No 267
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.88 E-value=0.018 Score=53.72 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=76.1
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc--------eEEEEECCcc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV--------SCHACIGGTI 154 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~--------~~~~~~~~~~ 154 (258)
..+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.+.++.++......+. .+....++..
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E 263 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDE 263 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCee
Confidence 34557888999999998876555543322 2468999999999999998887776543221 1111111110
Q ss_pred -hHHHH-HHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC-CCccEEEEEeeC
Q psy4698 155 -VRDDI-RKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN-NDVQVILLSATM 230 (258)
Q Consensus 155 -~~~~~-~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~-~~~~~i~~SAT~ 230 (258)
..-.. .....| ..|.+++.. .+...-.+++++|+|||..+.. ..+..++-.+. .+.+++++|.+-
T Consensus 264 ~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 264 NLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred EEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCceEEEeCCC
Confidence 00000 000001 233343322 2223334568999999997743 33334444443 467788888876
Q ss_pred C
Q psy4698 231 P 231 (258)
Q Consensus 231 ~ 231 (258)
.
T Consensus 333 ~ 333 (752)
T PHA03333 333 D 333 (752)
T ss_pred C
Confidence 3
No 268
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.015 Score=53.86 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=67.5
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
.++|.|++|+|||... ..+.+.+.....+.+++|+.. ..+..+....+.. +
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~---------------------------~ 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD---------------------------G 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh---------------------------c
Confidence 4899999999999754 344444444333446666653 3344433322211 0
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCCC-CccEEEEEeeCChhHH---HHHHH
Q psy4698 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLNN-DVQVILLSATMPADVL---DVSMK 240 (258)
Q Consensus 166 ~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~~-~~~~i~~SAT~~~~~~---~~~~~ 240 (258)
..+.+.+. +.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|.++. .-++.
T Consensus 367 ------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S 433 (617)
T PRK14086 367 ------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN 433 (617)
T ss_pred ------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh
Confidence 11111111 2347899999999775432 23445555555433 4567766655565543 23444
Q ss_pred hcCCCeEEEecC
Q psy4698 241 FMRDPIKILVKK 252 (258)
Q Consensus 241 ~~~~~~~v~~~~ 252 (258)
-+.-..++.+..
T Consensus 434 Rf~~GLvv~I~~ 445 (617)
T PRK14086 434 RFEWGLITDVQP 445 (617)
T ss_pred hhhcCceEEcCC
Confidence 555566665543
No 269
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.88 E-value=0.011 Score=53.47 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA--PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK 161 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (258)
|+-+.+.||||+|||++....+-......+. .++.++. +.+.-+.++.. .++...++.+...............
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr---~~AeilGVpv~~~~~~~Dl~~aL~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLR---IYGKILGVPVHAVKDAADLRLALSE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHH---HHHHHhCCCeeccCCchhHHHHHHh
Confidence 4568999999999998864433322222221 2444443 22333333333 3333334443333333223333334
Q ss_pred HhcCCcEEEeChHH
Q psy4698 162 LEAGAQVVVGTPGR 175 (258)
Q Consensus 162 ~~~~~~Ilv~Tp~~ 175 (258)
+.....++|-|+++
T Consensus 332 L~d~d~VLIDTaGr 345 (484)
T PRK06995 332 LRNKHIVLIDTIGM 345 (484)
T ss_pred ccCCCeEEeCCCCc
Confidence 44445688889884
No 270
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.86 E-value=0.0095 Score=50.36 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998763
No 271
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.85 E-value=0.01 Score=62.27 Aligned_cols=63 Identities=29% Similarity=0.365 Sum_probs=45.1
Q ss_pred CCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhH---HHHHHHhhhccccceEEEEeccHHHHHHHH
Q psy4698 68 EKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFS---ISILQQVDQNIKECQALILAPTRELAQQIQ 132 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l---~~~l~~l~~~~~~~~~lil~P~~~l~~q~~ 132 (258)
..+++.|+.++..++.+ +-++|.|..|+|||.+.. -++.+.+.. .+.+++.++||..-+....
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHH
Confidence 37899999999998765 457889999999998752 223333322 3457889999966665543
No 272
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0055 Score=53.27 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.1
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.+.|+.||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 46899999999999876
No 273
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.84 E-value=0.0026 Score=53.31 Aligned_cols=58 Identities=12% Similarity=0.265 Sum_probs=38.6
Q ss_pred CcccccccccccCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc
Q psy4698 36 GLIETNWDHVAENFDDMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI 113 (258)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~ 113 (258)
++.-+..+..+.+|+++++++-+.+.... +|. ++|.||||||||.+ +..++..+.+..
T Consensus 95 a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 95 ALVLRLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred EEEEeccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 33444455566678888887777664321 232 89999999999987 366666665543
No 274
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.83 E-value=0.033 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=16.5
Q ss_pred EEEEcccCCCcchHhHHHHHHHh
Q psy4698 87 VIAQAQSGTGKTATFSISILQQV 109 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l 109 (258)
++|.|+||+|||.+.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 46999999999998744 34444
No 275
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.012 Score=54.86 Aligned_cols=42 Identities=12% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCC
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMP 231 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~ 231 (258)
...+++||||+|+|... ....+.+.+...+....+|+. +|-+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILa-Ttd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFA-TTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEE-ECCh
Confidence 35679999999977443 445566666665555655554 4433
No 276
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.80 E-value=0.0073 Score=57.84 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=55.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
..+++-|.+++.+. ..+++|.|+.|||||.+...-+...+... ....++++++-|+..+.....++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35899999999653 45689999999999999877777666543 234489999999999999988887764
No 277
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.78 E-value=0.004 Score=53.47 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=42.8
Q ss_pred HHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 59 LRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 59 ~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
++.|.+.|. +++.|.+.+.. +..+++++|+|+||||||.. +..++..+.......+++++-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 344545554 56677777765 55678999999999999954 35555544322233467777666654
No 278
>PRK12377 putative replication protein; Provisional
Probab=96.78 E-value=0.048 Score=45.12 Aligned_cols=127 Identities=12% Similarity=0.132 Sum_probs=64.8
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
.++++.|++|+|||..+ .++...+... +..++++ +..++...+...+. .
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~--g~~v~~i-~~~~l~~~l~~~~~---------------------------~ 150 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK--GRSVIVV-TVPDVMSRLHESYD---------------------------N 150 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCeEEE-EHHHHHHHHHHHHh---------------------------c
Confidence 57999999999999765 3344444433 2234444 44455554433210 0
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHh-CCCCccEEEEEeeCChhHHH-----H
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKH-LNNDVQVILLSATMPADVLD-----V 237 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~-l~~~~~~i~~SAT~~~~~~~-----~ 237 (258)
+ . +...+++ .+.++++||+||++...... ....+..++.. ......+|+.|.--..++.+ +
T Consensus 151 ~-~----~~~~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri 218 (248)
T PRK12377 151 G-Q----SGEKFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERV 218 (248)
T ss_pred c-c----hHHHHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHH
Confidence 0 0 1111121 23567899999996432222 22333444433 33345677766544444443 2
Q ss_pred HHHhcC-CCeEEEecCCc
Q psy4698 238 SMKFMR-DPIKILVKKEE 254 (258)
Q Consensus 238 ~~~~~~-~~~~v~~~~~~ 254 (258)
...... ....|.+..++
T Consensus 219 ~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 219 MDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHHHhhCCCeEEEeCCcC
Confidence 222333 35667776655
No 279
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.73 E-value=0.0057 Score=52.39 Aligned_cols=40 Identities=10% Similarity=0.225 Sum_probs=27.4
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
+.++||+||+|.+........+..++...+..+++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4579999999987333344556666777777777766553
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.72 E-value=0.024 Score=46.33 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=34.9
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
+..|..+++.|++|+|||...+..+...+.+ +.++++++.. +...+..+.+..++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 3456789999999999998865555544332 3468888843 33345445454443
No 281
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.011 Score=54.07 Aligned_cols=39 Identities=13% Similarity=0.327 Sum_probs=26.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
...+++|+||+|.|... ..+.+.+.+...++.+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEE
Confidence 35789999999987543 3445566666666666666644
No 282
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.70 E-value=0.028 Score=48.04 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=25.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
..++|++||+|.+... ....+...+...+..+.+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987432 3345556666666666666654
No 283
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.69 E-value=0.021 Score=51.45 Aligned_cols=124 Identities=13% Similarity=0.307 Sum_probs=63.4
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+.+++.|++|+|||.... ++...+... +.+++++.. ..+..+....+ ..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~-~~f~~~~~~~l---------------------------~~ 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS-ELFTEHLVSAI---------------------------RS 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH-HHHHHHHHHHH---------------------------hc
Confidence 458999999999997643 444444432 346777753 33333222211 00
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHHhCC-CCccEEEEEeeCChhHHHH---HH
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLN-NDVQVILLSATMPADVLDV---SM 239 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~~~---~~ 239 (258)
+ ..+.+... ..+.+++++||+|.+.... ....+..++..+. ...++|+.|.+.|.++..+ +.
T Consensus 191 ~------~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~ 257 (445)
T PRK12422 191 G------EMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLI 257 (445)
T ss_pred c------hHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHH
Confidence 0 11111111 2356799999999875432 2344444544332 3455666555556555432 22
Q ss_pred HhcCCCeEEEecC
Q psy4698 240 KFMRDPIKILVKK 252 (258)
Q Consensus 240 ~~~~~~~~v~~~~ 252 (258)
..+.-...+.+.+
T Consensus 258 SR~~~Gl~~~l~~ 270 (445)
T PRK12422 258 SRFEWGIAIPLHP 270 (445)
T ss_pred hhhcCCeEEecCC
Confidence 3344445555543
No 284
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.025 Score=50.68 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=33.5
Q ss_pred cEEEEccchhhh-ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhc
Q psy4698 191 RMFVLDEADEML-SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFM 242 (258)
Q Consensus 191 ~~lVvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~ 242 (258)
++||+|.+-+.. +.....++..+.....++.-++.++|+...+..+.++.|.
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 689999985432 2234455555655555666677888887766666666654
No 285
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.024 Score=44.64 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=57.7
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE 163 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (258)
|+=.++.||+.||||.-.+..+-..-. .+.++++..|...--. +.......-|.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~---~g~~v~vfkp~iD~R~-------------~~~~V~Sr~G~---------- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE---AGMKVLVFKPAIDTRY-------------GVGKVSSRIGL---------- 57 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH---cCCeEEEEeccccccc-------------ccceeeeccCC----------
Confidence 344689999999999965433332222 3347888887432110 11111111111
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHh
Q psy4698 164 AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKH 216 (258)
Q Consensus 164 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~ 216 (258)
...-++|-....+++.+.......+ ++.|.||||+.+ +......+..+...
T Consensus 58 ~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 58 SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 1124666677777777765432222 789999999954 44344444444444
No 286
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.012 Score=51.61 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=24.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.+++|+||+|.+... ....+.+.+...+..+.+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~-a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRH-SFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHH-HHHHHHHHHhcCCCCeEEEEEc
Confidence 45679999999987433 2334455555555556566544
No 287
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.012 Score=54.70 Aligned_cols=40 Identities=13% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
.+.+++||||+|+|... ..+.+.+.++.-+.++.+|+.|-
T Consensus 123 gr~KViIIDEah~Ls~~-AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNH-AFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHH-HHHHHHHhhccCCCCceEEEEeC
Confidence 45789999999988543 33444455555455666666553
No 288
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.65 E-value=0.0063 Score=52.22 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 61 GIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 61 ~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
.+.+.|. +++.|...+.. +..+.+++|+|+||||||... -.++..+.......+++.+=...++
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 3444454 56777777655 456679999999999999864 4555555332233467776666554
No 289
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.64 E-value=0.0065 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=18.7
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
.+++|.||+|+|||.+. ..++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999775 44444443
No 290
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.01 Score=54.98 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=29.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
...+++||||+|.|... -.+.+.+.+...+..+.+|+.+ |-+..+..
T Consensus 117 ~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t-te~~kll~ 163 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT-TEPEKVLP 163 (584)
T ss_pred CCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe-CChHhhHH
Confidence 56789999999987433 4455566666655666566555 54444333
No 291
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.018 Score=54.11 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.+++||||+|.+.. .....+.+.+...+..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~-~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK-SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCH-HHHHHHHHHHHhCCCCcEEEEEe
Confidence 4578999999997643 23445666666656666666654
No 292
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.011 Score=55.01 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
.+.+++||||+|.+.. +..+.+.+.+..-+..+.+|+.+ |-+..+..
T Consensus 118 ~~~KVvIIdev~~Lt~-~a~naLLk~LEepp~~~~fIl~t-~~~~kl~~ 164 (576)
T PRK14965 118 SRYKIFIIDEVHMLST-NAFNALLKTLEEPPPHVKFIFAT-TEPHKVPI 164 (576)
T ss_pred CCceEEEEEChhhCCH-HHHHHHHHHHHcCCCCeEEEEEe-CChhhhhH
Confidence 5678999999997743 34455666666655556555544 54444333
No 293
>KOG0991|consensus
Probab=96.58 E-value=0.0087 Score=48.48 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCC
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMP 231 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~ 231 (258)
.+.+.+|+||||.|.+ +....+.+.+....+.+++.+...+-.
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchh
Confidence 4567999999998853 344555555555555555555444433
No 294
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.02 Score=53.69 Aligned_cols=46 Identities=13% Similarity=0.308 Sum_probs=27.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVL 235 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~ 235 (258)
...+++||||+|+|... -.+.+.+.+..-+..+.+|+. .|=+..+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~-Tt~~~kLl 163 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA-TTDPQKLP 163 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe-cCCccccc
Confidence 35789999999987433 445555566665555555554 34333333
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.56 E-value=0.042 Score=46.18 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.8
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+-+++.|++|+|||.+..-.+.. +.. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~--~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKK--QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh--cCCEEEEEe
Confidence 45788899999999876544432 222 234676666
No 296
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.034 Score=48.67 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
++.+++.||+|+|||....-.+.. +... +.++.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~--g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQ--NRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHc--CCeEEEEe
Confidence 456899999999999876544433 2222 23555555
No 297
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.021 Score=47.40 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=31.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV 134 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~ 134 (258)
+++++++.|++|.|||..+.... ..+... + .-++++++.+++.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~~~--g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELLKA--G-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHHHc--C-CeEEEEEHHHHHHHHHHH
Confidence 66799999999999998764333 334432 3 344555566666665553
No 298
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.037 Score=48.24 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
...+++||||+|.|.. .-.+.+.+.++.-+.++.+|++| +-+..+...++.
T Consensus 140 g~~rVviIDeAd~l~~-~aanaLLk~LEEpp~~~~fiLit-~~~~~llptIrS 190 (351)
T PRK09112 140 GNWRIVIIDPADDMNR-NAANAILKTLEEPPARALFILIS-HSSGRLLPTIRS 190 (351)
T ss_pred CCceEEEEEchhhcCH-HHHHHHHHHHhcCCCCceEEEEE-CChhhccHHHHh
Confidence 4678999999998743 34455667777655566556655 434444444444
No 299
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.011 Score=50.89 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=26.8
Q ss_pred CcHHHHHHhhhhhcCC----cEEEEcccCCCcchHhHHHH
Q psy4698 70 PSAIQQRAIIPCVRGN----DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~----~~li~~~tGsGKT~~~l~~~ 105 (258)
++|+|...+..+.... ..++.||.|.||+..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 4678888887765442 48899999999998765443
No 300
>PHA00729 NTP-binding motif containing protein
Probab=96.51 E-value=0.016 Score=46.98 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-cH----HHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-FK----DQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-~~----~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
+...++.+.+.+++.+....-.....+++|+||+-.-.... .. .....+...+.+.++++.+...-+.++...++
T Consensus 58 ~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 58 VQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 34566666666666664321112345789999942111110 01 12223333344457777777777777777777
Q ss_pred Hhc
Q psy4698 240 KFM 242 (258)
Q Consensus 240 ~~~ 242 (258)
...
T Consensus 138 ~Rg 140 (226)
T PHA00729 138 EKG 140 (226)
T ss_pred hCC
Confidence 643
No 301
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.019 Score=52.08 Aligned_cols=19 Identities=37% Similarity=0.380 Sum_probs=15.7
Q ss_pred cEEEEcccCCCcchHhHHH
Q psy4698 86 DVIAQAQSGTGKTATFSIS 104 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~ 104 (258)
.+++.||+|+|||..+...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999887443
No 302
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.50 E-value=0.011 Score=50.30 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=41.6
Q ss_pred HHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 59 LRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 59 ~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
++.|.+.|. +++.|...+.. +..+++++|+|+||||||... -.++..+.......+++++-...++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 344444453 44555555554 456679999999999999874 4455555432223477777766665
No 303
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.48 E-value=0.031 Score=44.04 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
....+++||||+|.+... ....+...+...++..-+|+.+
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 356789999999987433 3445556666544455455443
No 304
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.015 Score=54.30 Aligned_cols=44 Identities=14% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChh
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPAD 233 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~ 233 (258)
..++++||||+|+|... ..+.+.+.+..-+..+.+|+.+ |-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~-a~NaLLKtLEEPP~~~~fIL~T-td~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT-AFNAMLKTLEEPPEYLKFVLAT-TDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHH-HHHHHHHhcccCCCCeEEEEEE-CCchh
Confidence 45789999999987543 2333444444444455555543 44433
No 305
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.46 E-value=0.02 Score=54.52 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=24.7
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhH
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADV 234 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~ 234 (258)
...++|+||+|++... ....++..+ .+.++++.++|-++..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCChH
Confidence 3458999999987322 222333333 3456788888865443
No 306
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.068 Score=48.87 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.6
Q ss_pred cEEEEcccCCCcchHhHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~ 105 (258)
.++++||.|+|||.++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999874433
No 307
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.013 Score=50.20 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHCCCCCCcHHHHHHhhhhhcCC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH
Q psy4698 59 LRGIYAYGFEKPSAIQQRAIIPCVRGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133 (258)
Q Consensus 59 ~~~l~~~~~~~~~~~Q~~~~~~l~~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~ 133 (258)
+..|-+ +..+++-|-..+..+..++ |++++|.||||||+.. -.+...+.... |+|.+--+-+|--+.-.
T Consensus 149 l~dli~--~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~~e---RvItiEDtaELql~~ph 218 (355)
T COG4962 149 LLDLII--FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDSDE---RVITIEDTAELQLAHPH 218 (355)
T ss_pred HHHHHH--cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCCcc---cEEEEeehhhhccCCCc
Confidence 334443 4478888888887776665 9999999999999852 22222222222 78888777776554433
No 308
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.41 E-value=0.028 Score=50.62 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=53.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|.-+++.|++|+|||...+..+..... .+.+++|+.- .+...|....+.+++-..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~------------------- 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSG-EESASQIKLRAERLGLPSD------------------- 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEc-cccHHHHHHHHHHcCCChh-------------------
Confidence 3456899999999999876555544332 2347888875 3445566665655542111
Q ss_pred hcCCcEEEe---ChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 163 EAGAQVVVG---TPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 163 ~~~~~Ilv~---Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
++.+. ..+.+.+.+.. .+.++||+|+++.+..
T Consensus 136 ----~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 ----NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ----cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 02222 23334444432 2467999999997754
No 309
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.021 Score=53.13 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.6
Q ss_pred cEEEEcccCCCcchHhHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~ 105 (258)
.+++.||.|+|||.++...+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999875444
No 310
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.018 Score=52.73 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=27.5
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
....+++|+||+|.|.. .....+.+.+...++.+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~-~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK-EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH-HHHHHHHHHHhhcCCceEEEEEE
Confidence 35678999999998743 34455566666666667666655
No 311
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.027 Score=48.31 Aligned_cols=38 Identities=29% Similarity=0.220 Sum_probs=28.2
Q ss_pred CCCcHHHHHHhhhhh----cCC---cEEEEcccCCCcchHhHHHH
Q psy4698 68 EKPSAIQQRAIIPCV----RGN---DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~----~g~---~~li~~~tGsGKT~~~l~~~ 105 (258)
..++|+|..++..+. .|+ -+++.||.|.||+..+...+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA 47 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA 47 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 357788888887754 343 48999999999998765443
No 312
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.38 E-value=0.045 Score=48.77 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=30.7
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec--cHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP--TRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P--~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
-++++|++|+|||++..--+. .+.. .+.++++++- .|.-+.++ ++.++...++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~ 159 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFY 159 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEE
Confidence 478999999999977643332 2222 2346666663 44433333 3334444445443
No 313
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.055 Score=49.82 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=26.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.+++||||+|.+... ..+.+.+.+...+..+.+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 45679999999987433 4455666666655666666654
No 314
>PTZ00293 thymidine kinase; Provisional
Probab=96.37 E-value=0.034 Score=44.62 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=25.8
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
|+=-++.||++||||.-.+..+.. ... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~-y~~--ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKR-FTY--SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHH-HHH--cCCceEEEEecc
Confidence 455689999999999765444333 322 234688888853
No 315
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.36 E-value=0.021 Score=46.38 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=35.1
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|..+++.|++|+|||...+..+.+.+.+. +-+++|++- .+-..+..+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES-SS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 346799999999999988877777766662 125888873 333355555555443
No 316
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.36 E-value=0.013 Score=53.48 Aligned_cols=86 Identities=22% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCCcH----HHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEeccHH
Q psy4698 56 EELLRGIYAYGFEKPSA----IQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPTRE 126 (258)
Q Consensus 56 ~~l~~~l~~~~~~~~~~----~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~~~ 126 (258)
+-+...|.+.--.+++. +|.+-=+.+... +-++|.|..|||||.+++--+...++.- -....++++.|.+.
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~v 271 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRV 271 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHH
Confidence 34445665543333332 344444444433 4589999999999999876555555432 12234999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy4698 127 LAQQIQKVVIALGDF 141 (258)
Q Consensus 127 l~~q~~~~~~~~~~~ 141 (258)
....+.+++..+|..
T Consensus 272 FleYis~VLPeLGe~ 286 (747)
T COG3973 272 FLEYISRVLPELGEE 286 (747)
T ss_pred HHHHHHHhchhhccC
Confidence 999999999888753
No 317
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.36 E-value=0.039 Score=49.24 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=15.3
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999998763
No 318
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.35 E-value=0.044 Score=43.28 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=76.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH-HHHHHHHHHhcCCCCceEEEEECCcc-----hH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA-QQIQKVVIALGDFMSVSCHACIGGTI-----VR 156 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 156 (258)
....+++.+++|.|||.+++--++..+..+ .+++++.=.+.-. .--...++.+. ++....+-.+.. ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~~~~~~ 94 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWETQDRE 94 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCcccCCCcH
Confidence 456799999999999999876666655544 3566665222110 01112222221 222222111110 00
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc--HHHHHHHHHhCCCCccEEEEEeeCChhH
Q psy4698 157 DDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF--KDQIYDVFKHLNNDVQVILLSATMPADV 234 (258)
Q Consensus 157 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~--~~~~~~~~~~l~~~~~~i~~SAT~~~~~ 234 (258)
.... .....+..... .+.-..+++||+||+-..++.++ ...+..++...|...-+|+..-..|.++
T Consensus 95 e~~~-----------~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 95 RDIA-----------AAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred HHHH-----------HHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0000 11111222111 12235688999999998877764 4677788888777777777777778877
Q ss_pred HHHHHH
Q psy4698 235 LDVSMK 240 (258)
Q Consensus 235 ~~~~~~ 240 (258)
.+.+..
T Consensus 163 ie~ADl 168 (191)
T PRK05986 163 IEAADL 168 (191)
T ss_pred HHhCch
Confidence 766543
No 319
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.33 E-value=0.039 Score=45.27 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=29.2
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
..|.-++|.|++|+|||...+.-+.+.+.+. +.+++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 4566799999999999987765565555542 336888884
No 320
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.037 Score=51.64 Aligned_cols=40 Identities=10% Similarity=0.306 Sum_probs=27.2
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
....+++||||+|.+... ..+.+.+.+...+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 456789999999987432 3445555666666667666655
No 321
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.31 E-value=0.0073 Score=55.89 Aligned_cols=126 Identities=15% Similarity=0.130 Sum_probs=74.8
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHH-HHHHHhcCCCCce
Q psy4698 69 KPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQ-KVVIALGDFMSVS 145 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~-~~~~~~~~~~~~~ 145 (258)
..+|||.+.++.+... +.+++..++.+|||.+.+..+...+... ...++++.||...+.... ..+..+......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5689999999887655 5799999999999997655554444443 347999999999999987 4454444322211
Q ss_pred EEEEEC---C-cchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 146 CHACIG---G-TIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 146 ~~~~~~---~-~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
-..+.. . .......+... +..+.+....+- ..+.-..++++++||+|.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhccc
Confidence 011111 0 11111111222 334444432111 113344678999999998743
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.31 E-value=0.027 Score=46.30 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=37.0
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|..++|.|++|+|||...+..+...+.+ +.+++|++- .+...+..+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 45679999999999998776666665533 336888873 445556666666654
No 323
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.30 E-value=0.059 Score=47.15 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=29.8
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhC-CCCccEEEEEeeCChhH
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHL-NNDVQVILLSATMPADV 234 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~i~~SAT~~~~~ 234 (258)
+..+|++||.| +.+-.-.-.+.+++..+ ....-+|..|.+.|.++
T Consensus 127 ~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 45689999999 33444344444455443 45677888888888764
No 324
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=96.30 E-value=0.16 Score=43.93 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=63.6
Q ss_pred EEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH-HHH---HHHHHHHhcCC-CCceEEEEECCcchHHHHHHH
Q psy4698 88 IAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL-AQQ---IQKVVIALGDF-MSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 88 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l-~~q---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (258)
++.++.|+|||.+....++..+.......++++. ++... ... .......+... .............. +
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------L 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------e
Confidence 4778999999998877777766655433355555 55444 443 23334444333 22222211111111 1
Q ss_pred hcCCcEEEeChHHH--HHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC--ChhHHHHH
Q psy4698 163 EAGAQVVVGTPGRV--FDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM--PADVLDVS 238 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l--~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~--~~~~~~~~ 238 (258)
.+|..|.+.+.+.- ..-+.. ..++++++||+-.+.+..+...+...+... .....++.|.|. ......+.
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~p~~~~~~~~~~~ 147 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATW-GGSIRMYISTPPNPGGWFYEIF 147 (384)
T ss_dssp TTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCS-TT--EEEEEE---SSSHHHHHH
T ss_pred cCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhcc-cCcceEEeecCCCCCCceeeee
Confidence 56666777764321 112221 467799999988664443333333333322 222222444432 33455555
Q ss_pred HHhcCCC
Q psy4698 239 MKFMRDP 245 (258)
Q Consensus 239 ~~~~~~~ 245 (258)
.....+.
T Consensus 148 ~~~~~~~ 154 (384)
T PF03237_consen 148 QRNLDDD 154 (384)
T ss_dssp HHHHCTS
T ss_pred ehhhcCC
Confidence 5555443
No 325
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.30 E-value=0.03 Score=50.75 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=83.1
Q ss_pred CCcHHHHHHhhhhhc------C----CcEEEEcccCCCcchHhH-HHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVR------G----NDVIAQAQSGTGKTATFS-ISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~------g----~~~li~~~tGsGKT~~~l-~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
.+-|+|..++-.+.. | +.++|..|-+-|||..+. +.+...+.....+.+..|++|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 578999999977651 1 247888899999996553 33444444445566899999999999999988877
Q ss_pred hcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--CCCCCccEEEEccchhhhccCcHHHHHHHHH
Q psy4698 138 LGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA--LSTKQIRMFVLDEADEMLSRGFKDQIYDVFK 215 (258)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~ 215 (258)
...... ........-.....|.+.--....+.+..+. ..-.+..+.|+||.|...+.+ ..+..+..
T Consensus 141 mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 141 MVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 543322 0000000000111122322223333443322 233456799999999764441 22333332
Q ss_pred hC--CCCccEEEEEe
Q psy4698 216 HL--NNDVQVILLSA 228 (258)
Q Consensus 216 ~l--~~~~~~i~~SA 228 (258)
-+ +++.++++.|-
T Consensus 209 g~~ar~~~l~~~ITT 223 (546)
T COG4626 209 GLGARPEGLVVYITT 223 (546)
T ss_pred hhccCcCceEEEEec
Confidence 22 24556666554
No 326
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.28 E-value=0.0076 Score=50.80 Aligned_cols=38 Identities=21% Similarity=0.507 Sum_probs=25.5
Q ss_pred CccEEEEccchhhhccC--cHHHHHHHHHhCCCCc--cEEEE
Q psy4698 189 QIRMFVLDEADEMLSRG--FKDQIYDVFKHLNNDV--QVILL 226 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~--~~~~~~~~~~~l~~~~--~~i~~ 226 (258)
+++++||||+|+++... ....+...++.+.+.. .+|++
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 57799999999987654 3345556677776543 44443
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.057 Score=47.71 Aligned_cols=64 Identities=11% Similarity=0.258 Sum_probs=40.3
Q ss_pred CccEEEEccchhhhcc-CcHHHHHHHHHhCCC-CccEEEEEeeCChhHHH---HHHHhcCCCeEEEecC
Q psy4698 189 QIRMFVLDEADEMLSR-GFKDQIYDVFKHLNN-DVQVILLSATMPADVLD---VSMKFMRDPIKILVKK 252 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~~-~~~~i~~SAT~~~~~~~---~~~~~~~~~~~v~~~~ 252 (258)
+++++++|+++.+... .....+..++..+.. ..|+|+.|...|.++.. -++.-+.-..++.+.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~ 243 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEP 243 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCC
Confidence 5789999999987544 234555556666543 34888888777877553 3344444445555543
No 328
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.27 E-value=0.028 Score=46.79 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=72.2
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH--
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR-- 160 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (258)
.|.-++|.|.+|.|||..++-.+.+.+...+ ..++|++.--. ..+...++-......... ....+.....++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~-~~~l~~R~la~~s~v~~~--~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMS-EEELAARLLARLSGVPYN--KIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS--HHHHHHHHHHHHHTSTHH--HHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCC-HHHHHHHHHHHhhcchhh--hhhccccCHHHHHHH
Confidence 4456899999999999988777776665532 46888885322 122222221111111111 0111111111111
Q ss_pred -----HHhcCCcEEE-e----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHhCC-----CCc
Q psy4698 161 -----KLEAGAQVVV-G----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKHLN-----NDV 221 (258)
Q Consensus 161 -----~~~~~~~Ilv-~----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~l~-----~~~ 221 (258)
.+.. ..++| . |++.+...+..-.....++++||||-+|.+... +....+..+.+.++ .++
T Consensus 93 ~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 171 (259)
T PF03796_consen 93 QAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNI 171 (259)
T ss_dssp HHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 2222 34554 3 455555555432112267889999999977542 34455555544432 256
Q ss_pred cEEEEEee
Q psy4698 222 QVILLSAT 229 (258)
Q Consensus 222 ~~i~~SAT 229 (258)
.++.+|..
T Consensus 172 ~vi~~sQl 179 (259)
T PF03796_consen 172 PVIALSQL 179 (259)
T ss_dssp EEEEEEEB
T ss_pred eEEEcccc
Confidence 66666654
No 329
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.029 Score=51.59 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=26.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.+++||||+|.|... -.+.+.+.+...+..+.+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 45789999999987543 3344555666655666666655
No 330
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.0083 Score=53.78 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=30.4
Q ss_pred CcHHHHHHhhhhhcCCc--EEEEcccCCCcchHhHHHHHHHhhhc
Q psy4698 70 PSAIQQRAIIPCVRGND--VIAQAQSGTGKTATFSISILQQVDQN 112 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~--~li~~~tGsGKT~~~l~~~l~~l~~~ 112 (258)
+.+.|...+..+.+... +++.||||||||++. ..++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCC
Confidence 36677777777666654 899999999999874 5555555544
No 331
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.022 Score=49.91 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
...+++||||+|.+. ....+.+.+.++.-+..+.+|++|..
T Consensus 140 ~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 467799999999873 33455666666665555555554443
No 332
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.042 Score=50.95 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.3
Q ss_pred cEEEEcccCCCcchHhHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~ 105 (258)
.++++||.|+|||.++-..+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998875443
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.018 Score=52.62 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.8
Q ss_pred EEEEcccCCCcchHhHH
Q psy4698 87 VIAQAQSGTGKTATFSI 103 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~ 103 (258)
+++.||.|+|||.++..
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999998743
No 334
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.19 E-value=0.05 Score=41.74 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=40.7
Q ss_pred CCCccEEEEccchhhhccC--cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 187 TKQIRMFVLDEADEMLSRG--FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~--~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
...++++|+||+=.....+ -...+..+++..+...-+|+.+-..|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 4568999999998776555 3467778888887777788888888888777653
No 335
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.17 E-value=0.015 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.0
Q ss_pred CCcEEEEcccCCCcchHhHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~ 105 (258)
++.+++.||||+|||.+....+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998764333
No 336
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.16 E-value=0.14 Score=47.31 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=79.5
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh-cCCCCceEEEEECCcchHHHHHHHh
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL-GDFMSVSCHACIGGTIVRDDIRKLE 163 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (258)
|-.++--|--.|||.. +.|++..+.....+.++-|++.-+..++-.++++... .++.+....... +
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------------k 269 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------------K 269 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee------------c
Confidence 3456777999999975 5788888888778889999999988887777665432 122221111000 1
Q ss_pred cCCcEEEeChHH-----HHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC-CCccEEEEEeeC
Q psy4698 164 AGAQVVVGTPGR-----VFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN-NDVQVILLSATM 230 (258)
Q Consensus 164 ~~~~Ilv~Tp~~-----l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~-~~~~~i~~SAT~ 230 (258)
+ --|.+.-|+. +......+.++-.++.+++|||||-+ ....+..++-.+. +++++|..|.|-
T Consensus 270 ~-~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 270 D-NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred C-cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCC
Confidence 1 2355544432 11112335566778899999999965 2334444554443 567888888774
No 337
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.064 Score=50.14 Aligned_cols=110 Identities=23% Similarity=0.356 Sum_probs=68.7
Q ss_pred CCcHHHHHHhhhhh--------cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 69 KPSAIQQRAIIPCV--------RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~--------~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.+-.+-.+.++.+. .|.=+++.||+|-|||... ..+++.+ ++
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg---------------------------kSIA~al---~R 376 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG---------------------------KSIAKAL---GR 376 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH---------------------------HHHHHHh---CC
Confidence 45555555555532 3344899999999999753 1222211 11
Q ss_pred CCCceEEEEECCcchHHHHHHHhcCCcEEEeC-hHHHHHHHhcCC-CCCCCccEEEEccchhhhccCcHHHHHHHHHhCC
Q psy4698 141 FMSVSCHACIGGTIVRDDIRKLEAGAQVVVGT-PGRVFDMISRGA-LSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN 218 (258)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T-p~~l~~~l~~~~-~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~ 218 (258)
-.+....||.....+.+ ..-+-+||. |+++.+-++... .+. ++++||+|-|..+..+..-.+++.-|.
T Consensus 377 ---kfvR~sLGGvrDEAEIR---GHRRTYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 377 ---KFVRISLGGVRDEAEIR---GHRRTYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ---CEEEEecCccccHHHhc---cccccccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhcC
Confidence 12334456655544443 334567775 999999887632 222 899999999987777777777777764
No 338
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.11 E-value=0.03 Score=52.84 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=51.4
Q ss_pred CCcHHHHHHhhhhhcC-----CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCC
Q psy4698 69 KPSAIQQRAIIPCVRG-----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDF 141 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 141 (258)
.|+-.|..++..+.++ +..++.|.||||||+... .++..+ +..+||++|+..++.|++..++.+...
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQV-----NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHh-----CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 6788888888776544 256799999999998753 222221 235999999999999999999998754
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.10 E-value=0.063 Score=47.16 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=52.0
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|.-+++.|++|+|||...+..+...... +.+++|+.-. +...|....+.+++-..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~------------------- 137 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRLGISTE------------------- 137 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHcCCCcc-------------------
Confidence 35668999999999998765554433322 2478888754 334555555555432110
Q ss_pred hcCCcEEEe---ChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 163 EAGAQVVVG---TPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 163 ~~~~~Ilv~---Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
++.+. ..+.+.+.+.. .+.++||||+++.+..
T Consensus 138 ----~l~l~~e~~le~I~~~i~~-----~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 138 ----NLYLLAETNLEDILASIEE-----LKPDLVIIDSIQTVYS 172 (372)
T ss_pred ----cEEEEccCcHHHHHHHHHh-----cCCcEEEEcchHHhhc
Confidence 11111 23444444433 2467999999998753
No 340
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.09 E-value=0.034 Score=49.78 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=70.0
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
+..|.-+++.|++|+|||...+--+.+..... +..++|++. -.-..++..++-.... ++.......+.....++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fSl-Em~~~~l~~Rl~~~~~--~v~~~~~~~~~l~~~~~~ 265 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFSL-EMSAEQLGERLLASKS--GINTGNIRTGRFNDSDFN 265 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC-CCCHHHHHHHHHHHHc--CCCHHHHhcCCCCHHHHH
Confidence 34456799999999999987765554443222 335777763 2234444433322111 121111111111111111
Q ss_pred -------HHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhc---cCcHHHHHHHHHhCC-----CC
Q psy4698 161 -------KLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLS---RGFKDQIYDVFKHLN-----ND 220 (258)
Q Consensus 161 -------~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~---~~~~~~~~~~~~~l~-----~~ 220 (258)
.+. +..+.|. |++.+...+++-.....++++||||=.+.+.. .+....+..+.+.++ .+
T Consensus 266 ~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~ 344 (421)
T TIGR03600 266 RLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELD 344 (421)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 222 2356664 44445444432111122588999999997753 122333334433332 25
Q ss_pred ccEEEEEee
Q psy4698 221 VQVILLSAT 229 (258)
Q Consensus 221 ~~~i~~SAT 229 (258)
+.+|++|..
T Consensus 345 i~Vi~lsQl 353 (421)
T TIGR03600 345 VPVVLLAQL 353 (421)
T ss_pred CcEEEeccc
Confidence 667776653
No 341
>KOG0741|consensus
Probab=96.09 E-value=0.051 Score=49.15 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=30.4
Q ss_pred cCcCCCC---CCHHHHHHHHHCCCCCCcHHHHHHhhh--hhcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDME---LSEELLRGIYAYGFEKPSAIQQRAIIP--CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~---~~~~l~~~l~~~~~~~~~~~Q~~~~~~--l~~g~~~li~~~tGsGKT~~~ 101 (258)
-.|+++| ++.+.-+.++...-.+.+| -+.+.. +.+-+.+++.||+|+|||+.+
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFp--p~vie~lGi~HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFP--PEVIEQLGIKHVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCC--HHHHHHcCccceeeEEEECCCCCChhHHH
Confidence 3677775 5565555554322111111 112222 234467999999999999976
No 342
>PRK06904 replicative DNA helicase; Validated
Probab=96.08 E-value=0.084 Score=47.95 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=74.3
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
+..|.-+++.|.+|.|||..++-.+.+..... +..++|++. -....|+..++-........... ..+..-...++.
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~~~~i-~~g~~l~~~e~~ 293 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSL-EMPAEQIMMRMLASLSRVDQTKI-RTGQNLDQQDWA 293 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHh-ccCCCCCHHHHH
Confidence 33445689999999999987654444443332 235767654 34455555544332222221111 112111122221
Q ss_pred -------HHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhccC----cHHHHHHHHHhCC-----C
Q psy4698 161 -------KLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG----FKDQIYDVFKHLN-----N 219 (258)
Q Consensus 161 -------~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~----~~~~~~~~~~~l~-----~ 219 (258)
.+....++.|. |+..+...+++-...-.++++||||-.+.+...+ ....+..+.+.++ -
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 373 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL 373 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 22223446663 5555554443211111358899999999774322 2334444444442 2
Q ss_pred CccEEEEEeeCChhH
Q psy4698 220 DVQVILLSATMPADV 234 (258)
Q Consensus 220 ~~~~i~~SAT~~~~~ 234 (258)
++.+|++| -+++.+
T Consensus 374 ~ipVi~ls-QLnR~~ 387 (472)
T PRK06904 374 KVPVVALS-QLNRTL 387 (472)
T ss_pred CCeEEEEE-ecCchh
Confidence 67777776 445443
No 343
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.037 Score=51.34 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=26.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVL 235 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~ 235 (258)
.+.+++|+||+|.|... ....+.+.+...+..+-+|+++ +-+..+.
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T-t~~~KLl 163 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT-TEFQKIP 163 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC-CChHhhh
Confidence 35678999999987432 3445555555555555444444 4444443
No 344
>KOG2028|consensus
Probab=96.03 E-value=0.024 Score=48.96 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=30.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH-hcCCCeEEE
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK-FMRDPIKIL 249 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~-~~~~~~~v~ 249 (258)
-..+.+||+|++-.. +-..++-.. .+--+++..||-.+.--++... ..+|+|+|.
T Consensus 223 kTilFiDEiHRFNks----QQD~fLP~V-E~G~I~lIGATTENPSFqln~aLlSRC~VfvL 278 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKS----QQDTFLPHV-ENGDITLIGATTENPSFQLNAALLSRCRVFVL 278 (554)
T ss_pred eeEEEeHHhhhhhhh----hhhccccee-ccCceEEEecccCCCccchhHHHHhccceeEe
Confidence 347999999986322 111222222 2345777888865544444444 344777764
No 345
>PRK08840 replicative DNA helicase; Provisional
Probab=96.02 E-value=0.098 Score=47.38 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=72.4
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
+..|.-+++.|.+|.|||..++-.+.+..... +..++|++.- .-..|+..++-....... ...+..+.-...++.
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~--~~~i~~~~l~~~e~~ 288 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLE-MPAEQLMMRMLASLSRVD--QTKIRTGQLDDEDWA 288 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEecc-CCHHHHHHHHHHhhCCCC--HHHHhcCCCCHHHHH
Confidence 44556689999999999987754444443322 3356666543 335555544433222111 111111111122222
Q ss_pred H-------HhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHhCC-----C
Q psy4698 161 K-------LEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKHLN-----N 219 (258)
Q Consensus 161 ~-------~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~l~-----~ 219 (258)
. +.....+.|. |+..+...+++-...-.++++||||-.|.+... +....+..+.+.++ -
T Consensus 289 ~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel 368 (464)
T PRK08840 289 RISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKEL 368 (464)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 2 2123456664 344444333221111125889999999977422 12233444444443 2
Q ss_pred CccEEEEEeeCChh
Q psy4698 220 DVQVILLSATMPAD 233 (258)
Q Consensus 220 ~~~~i~~SAT~~~~ 233 (258)
++.+|++| -++++
T Consensus 369 ~ipVi~Ls-QLnR~ 381 (464)
T PRK08840 369 NVPVVALS-QLNRS 381 (464)
T ss_pred CCeEEEEE-ecCcc
Confidence 56777776 34443
No 346
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.02 E-value=0.088 Score=40.93 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=40.0
Q ss_pred CCccEEEEccchhhhccCc--HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGF--KDQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~--~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
..+++||+||+-..++.++ ...+..+++..|+..-+|+..-..|.++.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 4688999999998777663 467778888877777788877778887776654
No 347
>KOG2004|consensus
Probab=96.01 E-value=0.02 Score=53.35 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=69.9
Q ss_pred CCcHHHHHHhhhhh--------cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 69 KPSAIQQRAIIPCV--------RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~--------~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.+.++-.+.++.+. +|+-+++.||+|-|||.+. ++.|.. +++
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-----------------------kSIA~A-------LnR 464 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-----------------------KSIARA-------LNR 464 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-----------------------HHHHHH-------hCC
Confidence 55666677776653 4567999999999999865 111111 111
Q ss_pred CCCceEEEEECCcchHHHHHHHhcCCcEEEeC-hHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC
Q psy4698 141 FMSVSCHACIGGTIVRDDIRKLEAGAQVVVGT-PGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN 218 (258)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T-p~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~ 218 (258)
-.+....||.....+ ++...+-+|+. |+++.+.++.-...- -++.+||+|-+.....+..-.+++..+.
T Consensus 465 ---kFfRfSvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~N---PliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 465 ---KFFRFSVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTEN---PLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred ---ceEEEeccccccHHh---hcccceeeeccCChHHHHHHHhhCCCC---ceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 012333455544433 44456678875 999999998733211 1899999999876556666666776664
No 348
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.01 E-value=0.015 Score=54.16 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=28.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVIL 225 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~ 225 (258)
++-.++|+||+..-+|......+...+..+.++..++.
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 34469999999998888888888887776655533333
No 349
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.066 Score=47.54 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
..+.+++||||+|.+... ....+.+.+...++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~-~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA-AFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 456789999999987432 2334445555444444444433
No 350
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.99 E-value=0.14 Score=39.66 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+++.|++|+|||......+.. +... +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~-~~~~--g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY-LKKK--GKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--CCcEEEEE
Confidence 688999999999886444332 2222 33565554
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.2 Score=44.50 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=65.0
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA--PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
..+++.||+|+|||+.....+....... +.++.++. +.+..+..+.. .++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~eQLk---~yAe~lgvp~~~-------------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAIEQLK---RYADTMGMPFYP-------------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHHHHHH---HHHHhcCCCeee--------------
Confidence 3488999999999988754444332222 23455554 33443333222 222222222111
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHHhCC---CCccEEEEEeeCCh-hHHHH
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS-RGFKDQIYDVFKHLN---NDVQVILLSATMPA-DVLDV 237 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~-~~~~~~~~~~~~~l~---~~~~~i~~SAT~~~-~~~~~ 237 (258)
+..+..+.+.+.. .+.++|+||=+-+... ......+..++.... +.-.++.+|||.-. ++.+.
T Consensus 285 -------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 285 -------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred -------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 0112223333321 3567888887654321 223344455555432 22357788999865 67777
Q ss_pred HHHhc
Q psy4698 238 SMKFM 242 (258)
Q Consensus 238 ~~~~~ 242 (258)
.+.|-
T Consensus 353 ~~~f~ 357 (432)
T PRK12724 353 LKAYE 357 (432)
T ss_pred HHHhc
Confidence 77664
No 352
>PRK07004 replicative DNA helicase; Provisional
Probab=95.95 E-value=0.04 Score=49.83 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=69.4
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH--
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI-- 159 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 159 (258)
..|.-++|.|.+|+|||..++--+.+..... +..++|++. -.-..|+..++-.... ++.......+.-...++
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHH
Confidence 3445689999999999987765554433332 234666652 2334444443321111 11111111112122222
Q ss_pred -----HHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHhCC-----CC
Q psy4698 160 -----RKLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKHLN-----ND 220 (258)
Q Consensus 160 -----~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~l~-----~~ 220 (258)
..+. +..+.|. |+..+....++-......+++||||=.+.+... +....+..+.+.++ .+
T Consensus 286 ~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 364 (460)
T PRK07004 286 LTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELD 364 (460)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 2222 2467764 444444433321111235789999999977522 23334445554443 26
Q ss_pred ccEEEEEe
Q psy4698 221 VQVILLSA 228 (258)
Q Consensus 221 ~~~i~~SA 228 (258)
+.+|++|.
T Consensus 365 ipVi~lsQ 372 (460)
T PRK07004 365 VPVIALSQ 372 (460)
T ss_pred CeEEEEec
Confidence 77777764
No 353
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.95 E-value=0.01 Score=49.04 Aligned_cols=47 Identities=28% Similarity=0.475 Sum_probs=32.3
Q ss_pred CcccccccccccCcCCCCCCHHHHHH-HHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 36 GLIETNWDHVAENFDDMELSEELLRG-IYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
+++-+-....++.|+++++++.+.+. +.++|+ ++++|+|||||+...
T Consensus 97 g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTtm 144 (375)
T COG5008 97 GLVLRRIETKIPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTTM 144 (375)
T ss_pred hhhhhhhhccCCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhhH
Confidence 44444555666778888887766652 223343 799999999999874
No 354
>PRK10867 signal recognition particle protein; Provisional
Probab=95.93 E-value=0.07 Score=47.75 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=25.0
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe--ccHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA--PTRELA 128 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~--P~~~l~ 128 (258)
-++++|++|+|||++..-.+...... .+.+++++. +.|..+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHH
Confidence 38899999999998765444332222 133566665 344443
No 355
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.93 E-value=0.016 Score=54.69 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=51.8
Q ss_pred CCcHHHHHHhhhhhcC-----CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCC
Q psy4698 69 KPSAIQQRAIIPCVRG-----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDF 141 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 141 (258)
.|+..|..++..+..+ +..++.|.+|+||++.+. .++.. .+..+|||+|+...+.+++..++.+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~-----~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIAR-----LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHH-----hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 7899999999887533 257799999999998753 22222 1236999999999999999999888644
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.91 E-value=0.12 Score=41.96 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=32.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|..+++.|++|+|||......+...+.+ +..+++++- .+...+....++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 46789999999999998765545444432 235777764 223344444444443
No 357
>KOG1513|consensus
Probab=95.91 E-value=0.013 Score=54.96 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCcHHHHHHhhhhhcCC----------cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 69 KPSAIQQRAIIPCVRGN----------DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~----------~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
.++..|.+++-+.++-+ .++|--..|-||-.+..-.+++...++. .++|+++-+..|--+..+.++.+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR--KrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR--KRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc--ceeEEEEeccccccchhhchhhc
Confidence 56889999987765432 3677666666665443333455555543 37999998888877777777776
Q ss_pred cCCCCceEEEEECCc--c-hHHHHHHHhcCCcEEEeChHHHHHHHhc--C-----------CCCCCCccEEEEccchhhh
Q psy4698 139 GDFMSVSCHACIGGT--I-VRDDIRKLEAGAQVVVGTPGRVFDMISR--G-----------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 139 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~-----------~~~~~~l~~lVvDE~h~~~ 202 (258)
+. .++.+..+..-. . ...+....+ -.++++|+..|.---.. + +..-+.=++||+||+|.--
T Consensus 342 gA-~~I~V~alnK~KYakIss~en~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKENTNTK--RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred CC-CCccceehhhcccccccccccCCcc--ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 53 233333221110 0 011111122 36999999766421110 0 0001122589999999753
Q ss_pred c---------cCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 203 S---------RGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 203 ~---------~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
+ ...+..+..+.+.+ ++.+++..|||=
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATG 454 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATG 454 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccC
Confidence 2 12445666677777 457899999994
No 358
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.037 Score=49.00 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
.+.+++||||+|.|... ..+.+.+.+..-+++. ++++.+|-+..+...++.-
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEECChHHChHHHHhh
Confidence 46789999999998433 3344555555544444 5555555566655555443
No 359
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.88 E-value=0.13 Score=41.98 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=33.9
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|.-+++.|++|+|||......+...+.+ +.+++|+.-.. -..+..+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 34568999999999998775555544432 34677777543 3345555555553
No 360
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.87 E-value=0.11 Score=45.15 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.6
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
.+++.||.|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997763
No 361
>PRK04195 replication factor C large subunit; Provisional
Probab=95.87 E-value=0.029 Score=51.15 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999875
No 362
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.84 E-value=0.16 Score=39.47 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=64.4
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH-HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE-LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
+.|....|-|||.+++--++..+-. +.+++++.=.+. -..--...++.+. ++.+..+-.+-........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~~~~~~~---- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVWRMNEEE---- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT----GGGHH----
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccccCCCcH----
Confidence 5667778999999987666555443 447888864444 1111122222221 2332221111100000000
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH--HHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK--DQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 166 ~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~--~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
.+ .......++.... .+.-..+++||+||+-..++.++. ..+..+++.-|...-+|+..-..|.++.+.+.
T Consensus 76 ~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 00 0011111222221 233456889999999988777644 66778888777777777777777877776653
No 363
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.82 E-value=0.014 Score=53.73 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=26.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
++-+++|+||+-.-+|......+...+..+.++..+|..|
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 4456888888887777777777777666665555444443
No 364
>PRK08006 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.13 Score=46.79 Aligned_cols=147 Identities=18% Similarity=0.122 Sum_probs=74.4
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
+..|.-++|.|.+|.|||..++--+.+..... +..++|++.- .-..|+..++-..... +....+..+.-...++.
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLDDEDWA 295 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHHH
Confidence 33445689999999999987765555443332 3356666532 3345555444322222 21111111221222222
Q ss_pred H-------HhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHhCC-----C
Q psy4698 161 K-------LEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKHLN-----N 219 (258)
Q Consensus 161 ~-------~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~l~-----~ 219 (258)
. +.....+.|. |+..+....++-.....++++||||=.|.+... +....+..+.+.|+ -
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 2 2133456664 455554444321111135889999999977422 23344555554443 2
Q ss_pred CccEEEEEeeCChh
Q psy4698 220 DVQVILLSATMPAD 233 (258)
Q Consensus 220 ~~~~i~~SAT~~~~ 233 (258)
++.+|++|. +++.
T Consensus 376 ~ipVi~LsQ-LnR~ 388 (471)
T PRK08006 376 QVPVVALSQ-LNRS 388 (471)
T ss_pred CCeEEEEEe-cCcc
Confidence 577777773 4444
No 365
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.81 E-value=0.022 Score=49.94 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL 121 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil 121 (258)
+..++|+||||||||... ..++..+.......+++.+
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEE
Confidence 346899999999999874 4455555432222344444
No 366
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.75 E-value=0.061 Score=44.80 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=23.0
Q ss_pred CCcHHHHHHhhhhh----cCC-cEEEEcccCCCcchHhH
Q psy4698 69 KPSAIQQRAIIPCV----RGN-DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~-~~li~~~tGsGKT~~~l 102 (258)
.+++.+.+++..+. .+. .+++.|++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34555556665543 333 58999999999998753
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.74 E-value=0.025 Score=53.67 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=36.9
Q ss_pred EEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 192 MFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 192 ~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
++|+|+.|.+.+......+..+++..|++...+..|=+-|.
T Consensus 132 ~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 132 YLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred EEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 89999999998888888999999999999999999887664
No 368
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.097 Score=49.05 Aligned_cols=40 Identities=10% Similarity=0.234 Sum_probs=24.3
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
..+.+++||||+|.+... -.+.+.+.+...+...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~-a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA-AFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 456789999999987432 2344445555544444445544
No 369
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.11 Score=48.54 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.2
Q ss_pred cEEEEcccCCCcchHhHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~ 105 (258)
.+++.||.|+|||.++...+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999998875443
No 370
>KOG0738|consensus
Probab=95.70 E-value=0.037 Score=48.12 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=38.5
Q ss_pred ccEEEEccchhhhccC-------cHHHHH-HHHHhC---C----CCccEEEEEee-CChhHHHHHHHhcCCCeEEEecCC
Q psy4698 190 IRMFVLDEADEMLSRG-------FKDQIY-DVFKHL---N----NDVQVILLSAT-MPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~-------~~~~~~-~~~~~l---~----~~~~~i~~SAT-~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
-+.|.|||+|.+.... ....++ .++-.+ . ....++.+.|| +|=++-+-++.-+...++|-.++.
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDA 384 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCH
Confidence 3589999999886431 111121 122222 1 12235566777 677888888888888888766554
No 371
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.68 E-value=0.013 Score=47.46 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.5
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.++++.||+|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 36999999999999865
No 372
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.14 Score=44.27 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
...+++|+|++|.+ +......+.+.++..+....+|+ +++-+..+...++
T Consensus 112 ~~~kV~iiEp~~~L-d~~a~naLLk~LEep~~~~~~Il-vth~~~~ll~ti~ 161 (325)
T PRK08699 112 GGLRVILIHPAESM-NLQAANSLLKVLEEPPPQVVFLL-VSHAADKVLPTIK 161 (325)
T ss_pred CCceEEEEechhhC-CHHHHHHHHHHHHhCcCCCEEEE-EeCChHhChHHHH
Confidence 56789999999976 44566677777777665554555 4443334443333
No 373
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.085 Score=45.67 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcC
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMR 243 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~ 243 (258)
....+++|||+||.|-. ...+.+.+.+..=+.+. ++++.+.-+..+...++.-++
T Consensus 106 ~g~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~t-~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 106 LGGAKVVWLPDAALLTD-AAANALLKTLEEPPENT-WFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cCCceEEEEcchHhhCH-HHHHHHHHHhcCCCCCe-EEEEEECChhhChHHHHhccc
Confidence 35678999999998832 24455555555533334 444444445555555444443
No 374
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.56 E-value=0.17 Score=39.55 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=40.0
Q ss_pred CCccEEEEccchhhhccCc--HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGF--KDQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~--~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
..+++||+||+-...+.++ ...+..+++..|...-+|+..-..|+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5688999999998877764 467778888877777777777778877776553
No 375
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.082 Score=45.84 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=30.0
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
....+++|||++|.|.. .-.+.+.+.+..-++++ ++++.++-+..+...++.
T Consensus 130 ~~~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~t-~fiL~t~~~~~LLpTI~S 181 (342)
T PRK06964 130 RGGARVVVLYPAEALNV-AAANALLKTLEEPPPGT-VFLLVSARIDRLLPTILS 181 (342)
T ss_pred cCCceEEEEechhhcCH-HHHHHHHHHhcCCCcCc-EEEEEECChhhCcHHHHh
Confidence 35678999999998832 24455555555544444 444444444444444444
No 376
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.095 Score=48.64 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.8
Q ss_pred cEEEEcccCCCcchHhHHH
Q psy4698 86 DVIAQAQSGTGKTATFSIS 104 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~ 104 (258)
.+++.||.|.|||.++...
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999987543
No 377
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.53 E-value=0.17 Score=48.59 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.9
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.|+++.||+|+|||...-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999998763
No 378
>PRK06620 hypothetical protein; Validated
Probab=95.52 E-value=0.058 Score=43.62 Aligned_cols=58 Identities=12% Similarity=0.335 Sum_probs=30.3
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee-CChhHH-HHHHHhcCCCeEEEec
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT-MPADVL-DVSMKFMRDPIKILVK 251 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~v~~~ 251 (258)
.+++++||+|.+- ...+..++..+...-..+++|++ .|..+. .-++..+.-..++.+.
T Consensus 86 ~d~lliDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeC
Confidence 4589999999642 23444555554433334455555 454421 2244555555555553
No 379
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.053 Score=46.69 Aligned_cols=38 Identities=5% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILL 226 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~ 226 (258)
...+++|+|+||.|.. ...+.+.+.+..-+++..+|+.
T Consensus 106 g~~KV~iI~~a~~m~~-~AaNaLLKtLEEPp~~~~fiL~ 143 (325)
T PRK06871 106 GGNKVVYIQGAERLTE-AAANALLKTLEEPRPNTYFLLQ 143 (325)
T ss_pred CCceEEEEechhhhCH-HHHHHHHHHhcCCCCCeEEEEE
Confidence 4678999999998842 2445555555554444444443
No 380
>PRK09165 replicative DNA helicase; Provisional
Probab=95.50 E-value=0.1 Score=47.79 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=72.4
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhcc------------ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNI------------KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACI 150 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~------------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 150 (258)
.|.-++|.|.+|.|||..++--+.+...... .+..++|++. -.-..|+..++.......... .+.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~--~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSS--KIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHH--HHh
Confidence 3455899999999999877655544433211 2345666653 334455555443332222211 111
Q ss_pred CCcchHHHHHHHh------cCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhccC------cHHHHHHH
Q psy4698 151 GGTIVRDDIRKLE------AGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG------FKDQIYDV 213 (258)
Q Consensus 151 ~~~~~~~~~~~~~------~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~------~~~~~~~~ 213 (258)
.+.-...++..+. ....+.|. |++.+...+++-. .-.++++||||=.|.+.... ....+..+
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~-~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~i 371 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK-RQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEI 371 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHhccCCCCCCCCchHHHHHHH
Confidence 1221222222211 12456654 4555554443311 11358899999999764221 22234444
Q ss_pred HHhCC-----CCccEEEEEeeCChhHH
Q psy4698 214 FKHLN-----NDVQVILLSATMPADVL 235 (258)
Q Consensus 214 ~~~l~-----~~~~~i~~SAT~~~~~~ 235 (258)
.+.|+ -++.+|++|. +++.++
T Consensus 372 s~~LK~lAkel~ipVi~lsQ-LnR~~e 397 (497)
T PRK09165 372 TQGLKALAKELNIPVIALSQ-LSRQVE 397 (497)
T ss_pred HHHHHHHHHHhCCeEEEeec-ccchhh
Confidence 33332 2566666654 455443
No 381
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.49 E-value=0.14 Score=49.26 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=28.5
Q ss_pred cEEEEccchhhhccCc----HHHHHHHHHhCCCCccEEEEEeeCChhHH
Q psy4698 191 RMFVLDEADEMLSRGF----KDQIYDVFKHLNNDVQVILLSATMPADVL 235 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~~----~~~~~~~~~~l~~~~~~i~~SAT~~~~~~ 235 (258)
.+|++||+|.+...+. ...+..+++.+-..-++.++.||-+.+++
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 4899999999865432 23344445544344567777788776653
No 382
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.48 E-value=0.027 Score=49.20 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=20.2
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
.+..++|+||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999875 44555543
No 383
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.29 Score=41.91 Aligned_cols=129 Identities=22% Similarity=0.361 Sum_probs=71.0
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc--HHHHHHHHHHHHHhcCCCCceEEEE-ECCcchHHHHHHH
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT--RELAQQIQKVVIALGDFMSVSCHAC-IGGTIVRDDIRKL 162 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~--~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 162 (258)
.+++.|-.|+|||++.- -+...+.+. +.++++.+-. |+-+.++...+ +...++.+... .|+.
T Consensus 141 Vil~vGVNG~GKTTTIa-KLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w---~er~gv~vI~~~~G~D--------- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIA-KLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVW---GERLGVPVISGKEGAD--------- 205 (340)
T ss_pred EEEEEecCCCchHhHHH-HHHHHHHHC--CCeEEEEecchHHHHHHHHHHHH---HHHhCCeEEccCCCCC---------
Confidence 48999999999998753 222333333 3356666542 55444444333 32234444331 1221
Q ss_pred hcCCcEEEeChHH-HHHHHhcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHHhCCCCc------cEEEEEeeCChhH
Q psy4698 163 EAGAQVVVGTPGR-VFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLNNDV------QVILLSATMPADV 234 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~-l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-~~~~~~~~~~~~l~~~~------~~i~~SAT~~~~~ 234 (258)
|.. .++.+++. .-.+++++++|=|-++.+. +.-.++.++.+.+.+.. -++.+=||.-.+.
T Consensus 206 ----------pAaVafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna 273 (340)
T COG0552 206 ----------PAAVAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA 273 (340)
T ss_pred ----------cHHHHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH
Confidence 211 12333321 1245678888888877644 56677777777776544 3444488887665
Q ss_pred HHHHHHh
Q psy4698 235 LDVSMKF 241 (258)
Q Consensus 235 ~~~~~~~ 241 (258)
.+.++.|
T Consensus 274 l~QAk~F 280 (340)
T COG0552 274 LSQAKIF 280 (340)
T ss_pred HHHHHHH
Confidence 5555555
No 384
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.44 E-value=0.21 Score=42.77 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL 121 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil 121 (258)
++++++.|++|+|||..+. ++...+... +..+.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~--g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK--GVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCEEEE
Confidence 4679999999999998653 444444433 2344444
No 385
>PRK09087 hypothetical protein; Validated
Probab=95.44 E-value=0.093 Score=42.81 Aligned_cols=59 Identities=5% Similarity=0.072 Sum_probs=34.1
Q ss_pred EEEEccchhhhccCcHHHHHHHHHhCCC-CccEEEEEeeCChhHHH---HHHHhcCCCeEEEecC
Q psy4698 192 MFVLDEADEMLSRGFKDQIYDVFKHLNN-DVQVILLSATMPADVLD---VSMKFMRDPIKILVKK 252 (258)
Q Consensus 192 ~lVvDE~h~~~~~~~~~~~~~~~~~l~~-~~~~i~~SAT~~~~~~~---~~~~~~~~~~~v~~~~ 252 (258)
+|++||+|.+. .....+..++..+.. ..++|+.|.+-|..... -++..+....++.+..
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 79999999652 234556666665544 44444444444443322 2556666666666644
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.39 E-value=0.18 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=22.5
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
.++++|++|+|||++..-.+....... +.+++++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEe
Confidence 489999999999988654443322122 23566665
No 387
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.36 E-value=0.054 Score=42.97 Aligned_cols=54 Identities=13% Similarity=0.253 Sum_probs=27.9
Q ss_pred CccEEEEccchhhhccCcH-----HHHHHHHHhCCC-CccEEEEEeeCChhHHHHHHHhcC
Q psy4698 189 QIRMFVLDEADEMLSRGFK-----DQIYDVFKHLNN-DVQVILLSATMPADVLDVSMKFMR 243 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~-----~~~~~~~~~l~~-~~~~i~~SAT~~~~~~~~~~~~~~ 243 (258)
.=+++|+||||........ ......+...++ ...++++|..+ ..+...++...+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~lve 138 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRDLVE 138 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHCCEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHHHHh
Confidence 3459999999988655333 233344444443 45667776664 455555555444
No 388
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.36 E-value=0.21 Score=49.10 Aligned_cols=41 Identities=15% Similarity=0.393 Sum_probs=32.8
Q ss_pred EEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 192 MFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 192 ~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
+||+|++|.+.+......+..+++..+.+..+|+.|-+.|+
T Consensus 124 ~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 124 YLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 89999999875555566788888989888888888877543
No 389
>PRK05748 replicative DNA helicase; Provisional
Probab=95.35 E-value=0.13 Score=46.40 Aligned_cols=141 Identities=17% Similarity=0.170 Sum_probs=69.5
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHH-HhcCCCCceEEEEECCcchHHHHH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVI-ALGDFMSVSCHACIGGTIVRDDIR 160 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
..|.-++|.|.+|.|||...+-.+.+..... +..++|++. -....|+..++. ..+ ..... ....+.-...++.
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSl-Ems~~~l~~R~l~~~~-~v~~~--~i~~~~l~~~e~~ 274 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSL-EMGAESLVMRMLCAEG-NIDAQ--RLRTGQLTDDDWP 274 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeC-CCCHHHHHHHHHHHhc-CCCHH--HhhcCCCCHHHHH
Confidence 3445689999999999987765554433322 235666653 333445544442 222 21111 1111111122222
Q ss_pred -------HHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHHHhCC-----
Q psy4698 161 -------KLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-----GFKDQIYDVFKHLN----- 218 (258)
Q Consensus 161 -------~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-----~~~~~~~~~~~~l~----- 218 (258)
.+.+ ..+.|. |++.+...+++-.....++++||||=.+.+... +....+..+.+.++
T Consensus 275 ~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke 353 (448)
T PRK05748 275 KLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKE 353 (448)
T ss_pred HHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 2222 456663 445555443321111126889999999977422 12233444444442
Q ss_pred CCccEEEEEee
Q psy4698 219 NDVQVILLSAT 229 (258)
Q Consensus 219 ~~~~~i~~SAT 229 (258)
.++.+|++|..
T Consensus 354 ~~i~vi~lsQl 364 (448)
T PRK05748 354 LKVPVIALSQL 364 (448)
T ss_pred hCCeEEEeccc
Confidence 25667776664
No 390
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.079 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.8
Q ss_pred CcEEEEcccCCCcchHhHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~ 105 (258)
..+++.||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 357999999999998875444
No 391
>KOG2228|consensus
Probab=95.32 E-value=0.57 Score=40.28 Aligned_cols=44 Identities=20% Similarity=0.439 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 174 GRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 174 ~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
..++..++.+....+.-=++|+||+|-.........+..++...
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDis 165 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHH
Confidence 45566666655444443478999999665555555555555444
No 392
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.32 E-value=0.039 Score=43.28 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=27.3
Q ss_pred hhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHH
Q psy4698 79 IPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQI 131 (258)
Q Consensus 79 ~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~ 131 (258)
..+..++++++.|++|+|||..+... ...+... +..++|+ ....|....
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~~--g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAI-ANEAIRK--GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHH-HHHHHHT--T--EEEE-EHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHH-HHHhccC--CcceeEe-ecCceeccc
Confidence 34556789999999999999876433 3334432 3346555 444444443
No 393
>PRK08506 replicative DNA helicase; Provisional
Probab=95.30 E-value=0.11 Score=47.22 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH--
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR-- 160 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (258)
.|.-+++.|.+|.|||..++--+.+.+. .+..++|++.- .-..|+..++-......... .+..+.-...++.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~---~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~--~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALN---QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQ--NLRTGDLDDDEWERL 264 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHh---cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHH--HHhcCCCCHHHHHHH
Confidence 4456899999999999887666655442 23357777543 34555554443322222211 1111111111221
Q ss_pred -----HHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhccC----cHHHHHHHHHhC---C--CCc
Q psy4698 161 -----KLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG----FKDQIYDVFKHL---N--NDV 221 (258)
Q Consensus 161 -----~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~----~~~~~~~~~~~l---~--~~~ 221 (258)
.+.+ ..+.|. |+..+...+++-.....++++||||=.+.+...+ ....+..+.+.| - -++
T Consensus 265 ~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~i 343 (472)
T PRK08506 265 SDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDI 343 (472)
T ss_pred HHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 345553 4555554443311112358899999999774222 223344443333 2 256
Q ss_pred cEEEEEe
Q psy4698 222 QVILLSA 228 (258)
Q Consensus 222 ~~i~~SA 228 (258)
.++++|.
T Consensus 344 pVi~lsQ 350 (472)
T PRK08506 344 PIIALSQ 350 (472)
T ss_pred cEEEEee
Confidence 6777764
No 394
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.25 E-value=0.24 Score=38.88 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=35.5
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhc-------cccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQN-------IKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-------~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.|.-+++.|++|+|||...+-.+...+... ..+.+++|+..... ..+..+++..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 566799999999999988765555554311 14457888876555 5566666666543
No 395
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.23 E-value=0.25 Score=44.38 Aligned_cols=140 Identities=17% Similarity=0.104 Sum_probs=68.4
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH----
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---- 158 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (258)
.|.-++|.|++|+|||...+--+.+..... +..++|++.- .-..++..++............ ..+.....++
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~-~~g~l~~~~~~~~~ 269 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKL-RTGKLSDEDWEKLT 269 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHh-ccCCCCHHHHHHHH
Confidence 345689999999999987765555444332 2357777632 2334444333332222221111 1111111111
Q ss_pred --HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHhCC-----CCcc
Q psy4698 159 --IRKLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKHLN-----NDVQ 222 (258)
Q Consensus 159 --~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~l~-----~~~~ 222 (258)
...+.+ ..+.|. |++.+...+.+-.. -.++++||||=.+.+... .....+..+.+.++ .++.
T Consensus 270 ~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~ 347 (434)
T TIGR00665 270 SAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVP 347 (434)
T ss_pred HHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 112222 345552 44555544332111 134789999999977422 12233444444443 3566
Q ss_pred EEEEEe
Q psy4698 223 VILLSA 228 (258)
Q Consensus 223 ~i~~SA 228 (258)
++++|.
T Consensus 348 vi~lsq 353 (434)
T TIGR00665 348 VIALSQ 353 (434)
T ss_pred EEEEec
Confidence 777664
No 396
>PRK04328 hypothetical protein; Provisional
Probab=95.22 E-value=0.2 Score=41.52 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=34.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|..+++.|++|+|||...+..+...+.++ .+++|++ +.+-..+..+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g---e~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEE-eeCCHHHHHHHHHHcC
Confidence 456799999999999987766565555443 3577776 3344445555555554
No 397
>PRK05636 replicative DNA helicase; Provisional
Probab=95.21 E-value=0.078 Score=48.53 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE 163 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (258)
|.-+++.|.+|.|||...+-.+....... +..++|++. -.-..|+..++-......... ....+.....++..+.
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSl-EMs~~ql~~R~ls~~s~v~~~--~i~~g~l~~~e~~~~~ 339 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSL-EMSKSEIVMRLLSAEAEVRLS--DMRGGKMDEDAWEKLV 339 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEe-eCCHHHHHHHHHHHhcCCCHH--HHhcCCCCHHHHHHHH
Confidence 34578999999999987654443333222 235666642 233344443332221111111 1112221222222211
Q ss_pred ------cCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhccC----cHHHHHHHHHhCC-----CCccE
Q psy4698 164 ------AGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG----FKDQIYDVFKHLN-----NDVQV 223 (258)
Q Consensus 164 ------~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~----~~~~~~~~~~~l~-----~~~~~ 223 (258)
....+.|. |...+...+++-.. -.++++||||=.|.|.... ....+..+.+.|+ -++.+
T Consensus 340 ~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 418 (505)
T PRK05636 340 QRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPL 418 (505)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeE
Confidence 12456664 34444433332111 1358899999999875221 2233444444432 25777
Q ss_pred EEEEeeCChh
Q psy4698 224 ILLSATMPAD 233 (258)
Q Consensus 224 i~~SAT~~~~ 233 (258)
|++|. +++.
T Consensus 419 i~lsQ-LnR~ 427 (505)
T PRK05636 419 IAISQ-LNRG 427 (505)
T ss_pred EEEee-cCcc
Confidence 77764 4443
No 398
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.20 E-value=0.026 Score=44.51 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHh
Q psy4698 69 KPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQV 109 (258)
Q Consensus 69 ~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l 109 (258)
.+++.|...+.. +..|..+++.|+||||||... -.++..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 356667666665 556789999999999999864 3344433
No 399
>PRK08760 replicative DNA helicase; Provisional
Probab=95.19 E-value=0.14 Score=46.52 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=70.0
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH----
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---- 158 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (258)
.|.-++|.|.+|.|||...+-.+....... +..++|++. -.-..|+..++........... ...+.....++
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~~~ 303 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDWARVT 303 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHHHH
Confidence 345589999999999987765554443332 235666653 2334455555444332222211 11122111111
Q ss_pred --HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHhCC---C--Ccc
Q psy4698 159 --IRKLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKHLN---N--DVQ 222 (258)
Q Consensus 159 --~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~l~---~--~~~ 222 (258)
...+.+ ..+.|. |++.+...+++-. .-.++++||||=.+.+... +....+..+.+.++ + ++.
T Consensus 304 ~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ip 381 (476)
T PRK08760 304 GAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVP 381 (476)
T ss_pred HHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCE
Confidence 112222 456554 4555554443211 1135789999999977422 22333444444432 2 566
Q ss_pred EEEEEe
Q psy4698 223 VILLSA 228 (258)
Q Consensus 223 ~i~~SA 228 (258)
+|++|.
T Consensus 382 Vi~lsQ 387 (476)
T PRK08760 382 VIALSQ 387 (476)
T ss_pred EEEeec
Confidence 777663
No 400
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.18 E-value=0.32 Score=38.15 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=38.0
Q ss_pred CCccEEEEccchhhhccCc--HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGF--KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~--~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
..+++||+||+-..+..++ ..++..++..-|...-+|+..-..|..+.+.+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 3688999999998776654 3677777777666666666666678777666543
No 401
>KOG0739|consensus
Probab=95.17 E-value=0.37 Score=40.79 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=84.8
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCC-----cEEEEcccCCCcchHhHHHHHHHhhhccccceEE
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGN-----DVIAQAQSGTGKTATFSISILQQVDQNIKECQAL 119 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~-----~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~l 119 (258)
....|.+..=-+...++|++.-+.. .-+|++..|+ -+++.||+|+||+..+- .+..+.+ .+.
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILP------IKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK-----AVATEAn--STF 194 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILP------IKFPQLFTGKRKPWRGILLYGPPGTGKSYLAK-----AVATEAN--STF 194 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeec------ccchhhhcCCCCcceeEEEeCCCCCcHHHHHH-----HHHhhcC--Cce
Confidence 3446666643344555565432111 0134566663 49999999999996542 2222222 466
Q ss_pred EEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccch
Q psy4698 120 ILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEAD 199 (258)
Q Consensus 120 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 199 (258)
+-+.+..|+..|.-.-.++. ..|+.+.+.+. -++|.|||+|
T Consensus 195 FSvSSSDLvSKWmGESEkLV----------------------------------knLFemARe~k-----PSIIFiDEiD 235 (439)
T KOG0739|consen 195 FSVSSSDLVSKWMGESEKLV----------------------------------KNLFEMARENK-----PSIIFIDEID 235 (439)
T ss_pred EEeehHHHHHHHhccHHHHH----------------------------------HHHHHHHHhcC-----CcEEEeehhh
Confidence 66667777766654333321 12334444332 3589999999
Q ss_pred hhhccCcH------HHHH-HHHHhCC----CCccEEEEEeeC-ChhHHHHHHHhcCCCeEEEec
Q psy4698 200 EMLSRGFK------DQIY-DVFKHLN----NDVQVILLSATM-PADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 200 ~~~~~~~~------~~~~-~~~~~l~----~~~~~i~~SAT~-~~~~~~~~~~~~~~~~~v~~~ 251 (258)
.+...... ..+. .++-.++ .+--++.+.||- |=.+..-++..+.....|-.+
T Consensus 236 slcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739|consen 236 SLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCC
Confidence 87644322 2222 2333332 344678888884 556666666666666666443
No 402
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.14 E-value=0.027 Score=48.89 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=29.7
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
.+..+++++|+|+||||||... -.++..+.. ..+++.+-.+.++
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHcccCC---CCCEEEECCCccc
Confidence 3557789999999999999864 344444433 2356666666554
No 403
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.11 E-value=0.072 Score=46.07 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=27.8
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
+..+++++|+|+||||||... -.++..+... .+++.+=-+.+
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~---~ri~tiEd~~E 198 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAI---ERLITVEDARE 198 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCC---CeEEEecCCCc
Confidence 456789999999999999864 4455554432 25655533333
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.07 E-value=0.92 Score=39.03 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
++-+++.||+|+|||+...--+.. +.. .+.+++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~-l~~--~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK-YKA--QGKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHh--cCCeEEEEe
Confidence 345889999999999875433222 222 233666665
No 405
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.07 E-value=0.078 Score=51.68 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=15.8
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.|.++.||.|.|||...-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 579999999999998763
No 406
>PRK05595 replicative DNA helicase; Provisional
Probab=95.02 E-value=0.25 Score=44.55 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=69.5
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|.-++|.|.||.|||..++--+....... +.+++|++.- ....|+..++.......... .+..+.....++..+
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlE-ms~~~l~~R~~a~~~~v~~~--~~~~~~l~~~e~~~~ 274 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLE-MSKEQLAYKLLCSEANVDML--RLRTGNLEDKDWENI 274 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecC-CCHHHHHHHHHHHhcCCCHH--HHhcCCCCHHHHHHH
Confidence 345588999999999987655444333222 3357777642 23444444432222222211 111111111122111
Q ss_pred h------cCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhccC----cHHHHHHHHHhCC-----CCcc
Q psy4698 163 E------AGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG----FKDQIYDVFKHLN-----NDVQ 222 (258)
Q Consensus 163 ~------~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~----~~~~~~~~~~~l~-----~~~~ 222 (258)
. ....+.|. |++.+...+++-. .-.++++||||=.|.+.... ....+..+.+.++ -++.
T Consensus 275 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~-~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~ 353 (444)
T PRK05595 275 ARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK-IEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECP 353 (444)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCe
Confidence 1 11345553 3444443333211 11358899999999875322 2233444444432 2566
Q ss_pred EEEEEeeCChhH
Q psy4698 223 VILLSATMPADV 234 (258)
Q Consensus 223 ~i~~SAT~~~~~ 234 (258)
++++|. ++++.
T Consensus 354 vi~lsQ-LnR~~ 364 (444)
T PRK05595 354 VIALSQ-LSRAP 364 (444)
T ss_pred EEEeec-cCcch
Confidence 777654 45443
No 407
>PHA00012 I assembly protein
Probab=95.02 E-value=0.55 Score=40.26 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCCccEEEEccchhhhccCc-----HHHHHHHHHhCC-CCccEEEEEeeCChhHHHHHHHhcCCCeEEE
Q psy4698 187 TKQIRMFVLDEADEMLSRGF-----KDQIYDVFKHLN-NDVQVILLSATMPADVLDVSMKFMRDPIKIL 249 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~-----~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~ 249 (258)
.+.-+++|+||||..+.... ...+...+...+ ...-++++|... ..+...++..+..-++.+
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p-s~VDs~IR~ll~eH~v~c 146 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI-SIMDKQAREALAEHVVYC 146 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH-HHHhHHHHHhhhheEEEE
Confidence 35667999999998875321 133445444433 356677777764 477777776666555443
No 408
>KOG0058|consensus
Probab=95.01 E-value=0.067 Score=50.02 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=74.8
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE-eccHHHHHHHHHHHHHhcCCCCceEE---------EE
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL-APTRELAQQIQKVVIALGDFMSVSCH---------AC 149 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil-~P~~~l~~q~~~~~~~~~~~~~~~~~---------~~ 149 (258)
.+..|+.+.++||.|+|||.++ .++.+++.-..| ++++= +|-+.+-..+.+ +.....+-.-. ..
T Consensus 490 ti~pGe~vALVGPSGsGKSTia--sLL~rfY~PtsG-~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIA--SLLLRFYDPTSG-RILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHH--HHHHHhcCCCCC-eEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHHHHh
Confidence 3678999999999999999975 456666654322 22221 233333222222 21111110000 01
Q ss_pred ECCcch--------------HHHHHHHhcCCcEEEeChHHHHH-------HHhcCCCCCCCccEEEEccchhhhccCcHH
Q psy4698 150 IGGTIV--------------RDDIRKLEAGAQVVVGTPGRVFD-------MISRGALSTKQIRMFVLDEADEMLSRGFKD 208 (258)
Q Consensus 150 ~~~~~~--------------~~~~~~~~~~~~Ilv~Tp~~l~~-------~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~ 208 (258)
+|..+. .+......+|++-.|+.-+..+. .+-+ .-+++-..+|+|||-.-+|...+.
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR--ALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR--ALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH--HHhcCCCEEEEechhhhcchhhHH
Confidence 111111 11223334455666655543221 0011 113455699999999999988888
Q ss_pred HHHHHHHhCCCCccEEEEEee
Q psy4698 209 QIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 209 ~~~~~~~~l~~~~~~i~~SAT 229 (258)
.+...+.++..+ +.+++=|.
T Consensus 642 lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 642 LVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred HHHHHHHHhhcC-CeEEEEeh
Confidence 888888777666 45555554
No 409
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.29 Score=44.21 Aligned_cols=39 Identities=10% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.+++||||+|.+... ....+.+.+..-+..+.+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEEe
Confidence 45679999999987432 3344455555544555555543
No 410
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.18 Score=43.29 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
..+.+++|||+||.|.. ...+.+.+.+..-+++. ++++.++-+..+...++.-
T Consensus 106 ~~~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~t-~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE-SASNALLKTLEEPAPNC-LFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCCceEEEecchhhhCH-HHHHHHHHHhcCCCCCe-EEEEEECChhhChHHHHhc
Confidence 45678999999998832 24455555555544444 4444444455555554443
No 411
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.95 E-value=0.053 Score=49.49 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.7
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999864
No 412
>PHA00350 putative assembly protein
Probab=94.92 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=17.3
Q ss_pred EEEEcccCCCcchHhHHH-HHHHhh
Q psy4698 87 VIAQAQSGTGKTATFSIS-ILQQVD 110 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~-~l~~l~ 110 (258)
.++.|..|||||+.++-- ++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 478999999999887653 443333
No 413
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.23 Score=42.66 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=37.0
Q ss_pred EeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 170 VGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 170 v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
|-....+.+.+....+ ....+++|||++|.|. ....+.+.+.+..-+ ++.+|+++. =+..+...++.
T Consensus 106 id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~-~~aaNaLLK~LEEPp-~~~fILi~~-~~~~Ll~TI~S 172 (314)
T PRK07399 106 LEQIREIKRFLSRPPL-EAPRKVVVIEDAETMN-EAAANALLKTLEEPG-NGTLILIAP-SPESLLPTIVS 172 (314)
T ss_pred HHHHHHHHHHHccCcc-cCCceEEEEEchhhcC-HHHHHHHHHHHhCCC-CCeEEEEEC-ChHhCcHHHHh
Confidence 3333344444444332 3578899999999873 234555666666655 565555443 34444444433
No 414
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.87 E-value=0.18 Score=45.39 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHH
Q psy4698 57 ELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVI 136 (258)
Q Consensus 57 ~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 136 (258)
.+++.+++ ++..+-..|.++.-..-.|+- .|.|-.|||||.....-+. .+...+..-+++|.+=|+.|+.+......
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 44444443 344667778887766666765 7899999999987654443 34445556699999999999999988887
Q ss_pred Hhc
Q psy4698 137 ALG 139 (258)
Q Consensus 137 ~~~ 139 (258)
+|+
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 765
No 415
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.86 E-value=0.035 Score=46.48 Aligned_cols=43 Identities=14% Similarity=0.354 Sum_probs=29.6
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
+..+.+++++|+||||||... ..++..+... ..+++++-...+
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E 166 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPE 166 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccc
Confidence 456788999999999999875 5555555544 236777765544
No 416
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.86 E-value=0.1 Score=50.18 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=28.9
Q ss_pred cCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAY---GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~---~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.+.+-...+.+.|.+. .+..+..++.. -+...+.+++.||+|+|||..+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~---g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM---GIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEECCCCCCHHHHH
Confidence 3566666666666655442 11111111111 1223356999999999999875
No 417
>KOG0742|consensus
Probab=94.85 E-value=0.065 Score=47.05 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.3
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+|+++.||+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 58999999999999865
No 418
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.81 E-value=0.19 Score=48.30 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.7
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..++.+++.||+|+|||..+
T Consensus 210 ~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCceEEEECCCCCChHHHH
Confidence 34578999999999999764
No 419
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.80 E-value=0.037 Score=45.01 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=12.9
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
++|.|+.|||||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999864
No 420
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.76 E-value=0.26 Score=43.54 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=21.7
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhc
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQN 112 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~ 112 (258)
+-.|..++|.||+|+|||... ..+...+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 446788999999999999754 3344444433
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.73 E-value=0.23 Score=48.58 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=27.7
Q ss_pred ccEEEEccchhhhccCc---HHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 190 IRMFVLDEADEMLSRGF---KDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~---~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
-.+|+|||+|.+...+. ......+++..-..-.+.++.||-.++++.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 34899999999874221 122333333332344577777887776644
No 422
>PRK10436 hypothetical protein; Provisional
Probab=94.73 E-value=0.048 Score=49.27 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=26.1
Q ss_pred cHHHHHHhhhhhc--CCcEEEEcccCCCcchHhHHHHHHHhhh
Q psy4698 71 SAIQQRAIIPCVR--GNDVIAQAQSGTGKTATFSISILQQVDQ 111 (258)
Q Consensus 71 ~~~Q~~~~~~l~~--g~~~li~~~tGsGKT~~~l~~~l~~l~~ 111 (258)
.+.|.+.+..+.. +.-++++||||||||.+. ..++..+..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 4455555555433 345899999999999875 345555543
No 423
>KOG0732|consensus
Probab=94.72 E-value=0.074 Score=51.96 Aligned_cols=142 Identities=16% Similarity=0.195 Sum_probs=77.1
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCC-CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFE-KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
....|.+.|-...+++.|+++-.. -++|-+..-+ .+..-+.++++||.|+|||+.+- ++......+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ar-aLa~~~s~~~~--------- 328 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMAR-ALAAACSRGNR--------- 328 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHH-hhhhhhccccc---------
Confidence 335788888778888888775431 2222222222 23344669999999999998751 11111111111
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC---CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchh
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG---AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADE 200 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 200 (258)
+.. + ....| .+--|+..++=+.++.... .-.....+.+||++=
T Consensus 329 -------------kis------f--------------fmrkgaD~lskwvgEaERqlrllFeeA-~k~qPSIIffdeIdG 374 (1080)
T KOG0732|consen 329 -------------KIS------F--------------FMRKGADCLSKWVGEAERQLRLLFEEA-QKTQPSIIFFDEIDG 374 (1080)
T ss_pred -------------ccc------h--------------hhhcCchhhccccCcHHHHHHHHHHHH-hccCceEEecccccc
Confidence 100 0 00111 1233666666555554321 122456899999992
Q ss_pred h-------h---ccCcHHHHHHHHHhCCCCccEEEEEeeCC
Q psy4698 201 M-------L---SRGFKDQIYDVFKHLNNDVQVILLSATMP 231 (258)
Q Consensus 201 ~-------~---~~~~~~~~~~~~~~l~~~~~~i~~SAT~~ 231 (258)
+ . .......+..++.-++...|++..+||--
T Consensus 375 lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 375 LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 2 1 11234555556666677889999999963
No 424
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.16 Score=43.98 Aligned_cols=52 Identities=12% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHH
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMK 240 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~ 240 (258)
..+.+++||||+|.+... ..+.+.+.+..-++.+.+|+ .++-+..+...++.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il-~t~~~~~ll~TIrS 159 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAIL-LTENKHQILPTILS 159 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEE-EeCChHhCcHHHHh
Confidence 356789999999987432 44556666666555565555 44434444444443
No 425
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.69 E-value=0.2 Score=48.99 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=26.8
Q ss_pred cEEEEccchhhhccC---cHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 191 RMFVLDEADEMLSRG---FKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~---~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
.+|+|||+|.+...+ -......++...-.+-.+.++.||-+++++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHH
Confidence 389999999986442 1112233333222344667777887777643
No 426
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.68 E-value=0.2 Score=44.48 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=16.7
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
..+.+++.||+|+|||+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4578999999999999875
No 427
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.67 E-value=0.031 Score=49.33 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=36.8
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
++++.|+||||||..+++|-+... +..++|+=|.-++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHcC
Confidence 578999999999999887766542 2368888888888877666655543
No 428
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.67 E-value=0.23 Score=44.95 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=53.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|.-+++.|++|+|||...+..+...... +.+++|+... +...|....+.+++-... .... ...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rlg~~~~-~l~~-~~e---------- 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRLGLPEP-NLYV-LSE---------- 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHcCCChH-HeEE-cCC----------
Confidence 34669999999999998876555443332 2368888754 345566555555431110 0000 000
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
.+.+.+...+.. .+.+++|||.+..+..
T Consensus 157 --------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 157 --------TNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred --------CCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 134555555543 2457999999987653
No 429
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.34 Score=45.56 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChh
Q psy4698 187 TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPAD 233 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~ 233 (258)
..+.+++||||+|.+.. .....+.+.+...+..+.+| +.+|-+..
T Consensus 119 ~~~~KVvIIdea~~Ls~-~a~naLLK~LEepp~~tifI-L~tt~~~k 163 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ-AAFNAFLKTLEEPPSYAIFI-LATTEKHK 163 (614)
T ss_pred cCCcEEEEEECcccCCH-HHHHHHHHHHhCCCCCeEEE-EEeCCchh
Confidence 45678999999998743 24445556666655555444 44443333
No 430
>PRK06321 replicative DNA helicase; Provisional
Probab=94.65 E-value=0.47 Score=43.13 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=68.6
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEE-ECCcchHHHH---
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHAC-IGGTIVRDDI--- 159 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 159 (258)
|.-++|.|.+|.|||.-.+--+....... +..++|++. -.-..|+..++-....... ...+ .+.....++.
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~--g~~v~~fSL-EMs~~ql~~Rlla~~s~v~--~~~i~~~~l~~~e~~~~~ 300 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQN--RLPVGIFSL-EMTVDQLIHRIICSRSEVE--SKKISVGDLSGRDFQRIV 300 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEec-cCCHHHHHHHHHHhhcCCC--HHHhhcCCCCHHHHHHHH
Confidence 44588999999999987655333322222 234666652 2334444444322222221 1111 1222222211
Q ss_pred ---HHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhccC-------cHHHHHHHHHhCC-----C
Q psy4698 160 ---RKLEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG-------FKDQIYDVFKHLN-----N 219 (258)
Q Consensus 160 ---~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~-------~~~~~~~~~~~l~-----~ 219 (258)
..+.. ..+.|. |.+.+...+++-. .-.++++||||=.+.+...+ ....+..+.+.++ -
T Consensus 301 ~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel 378 (472)
T PRK06321 301 SVVNEMQE-HTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLAREL 378 (472)
T ss_pred HHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 22222 456665 4555544443311 12458899999999774221 2234444554443 2
Q ss_pred CccEEEEEee
Q psy4698 220 DVQVILLSAT 229 (258)
Q Consensus 220 ~~~~i~~SAT 229 (258)
++.+|++|.-
T Consensus 379 ~vpVi~lsQL 388 (472)
T PRK06321 379 NIPILCLSQL 388 (472)
T ss_pred CCcEEEEeec
Confidence 6767776653
No 431
>KOG1133|consensus
Probab=94.64 E-value=0.05 Score=50.49 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCcHHHHHHhhh----hhcCCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 69 KPSAIQQRAIIP----CVRGNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 69 ~~~~~Q~~~~~~----l~~g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
+|+++|.+.+.. +-.|+--|+.+|||+|||+..+=..+..+.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 789999887766 457888999999999999987766666653
No 432
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.4 Score=43.78 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVIL 225 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~ 225 (258)
...+++|+||+|.+... ..+.+...+...+..+-+|+
T Consensus 118 ~~~KVvIIDEad~Lt~~-a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKE-AFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred CCeeEEEEEChhhcCHH-HHHHHHHHHhcCCCCeEEEE
Confidence 46789999999977433 23344445554444443333
No 433
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.57 E-value=0.038 Score=44.53 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=18.0
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQV 109 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l 109 (258)
+..++|.||.|+|||... ..++..+
T Consensus 20 ~~~~~l~G~rg~GKTsLl-~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLL-KEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHH-HHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHH-HHHHHHh
Confidence 367999999999999853 3444444
No 434
>PRK05973 replicative DNA helicase; Provisional
Probab=94.56 E-value=0.15 Score=41.78 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=37.6
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
-+..|.-++|.|++|+|||...+..+.+.+.+ +.+++|++-. +-..+....+..++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 34556679999999999998877666655543 3367787643 23466666665553
No 435
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.39 Score=45.74 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=26.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVL 235 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~ 235 (258)
...+++|+||+|.|... ....+.+.+...+..+.+|+ .+|-+..+.
T Consensus 117 g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifIL-aTte~~KLl 162 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFIL-ATTEVHKIP 162 (725)
T ss_pred CCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEE-EcCChhhhh
Confidence 56789999999987432 34444555555444454444 334444443
No 436
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.43 E-value=0.21 Score=48.33 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.9
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.||+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3457999999999999865
No 437
>KOG0734|consensus
Probab=94.41 E-value=0.25 Score=44.93 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=35.1
Q ss_pred cEEEEccchhhhccCc-------HHHHHHHHHh---CCCCccEEEEEeeC-ChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 191 RMFVLDEADEMLSRGF-------KDQIYDVFKH---LNNDVQVILLSATM-PADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~~-------~~~~~~~~~~---l~~~~~~i~~SAT~-~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
..|.|||+|.+..... ...+..++.. +..+--+|.+.||- |..+..-+-.-.+--..|.|+..++
T Consensus 398 cIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 398 CIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred eEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence 4789999997753211 1222233333 34566799999994 4444333333333334555555443
No 438
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.40 E-value=0.36 Score=38.56 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=27.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|.-+.+.|++|+|||...+..+...... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 34568999999999998876555544432 3468888764
No 439
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.35 E-value=0.11 Score=44.72 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=30.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQ 129 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~ 129 (258)
.|.-+.|.||+|+|||...+..+...... +.+++|+.....+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 34668999999999998876555554332 346888866554444
No 440
>PRK09354 recA recombinase A; Provisional
Probab=94.31 E-value=0.12 Score=44.79 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQ 129 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~ 129 (258)
|+-+.|.||+|+|||...+..+...... +.+++|+.....+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHH
Confidence 4568999999999998876665554432 347888887655554
No 441
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.31 E-value=0.052 Score=49.22 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=38.3
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.++++.||||||||..+++|.+-. .. ..+||.=|..++........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~---~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YP---GSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--cc---CCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999998887633 21 257777788888887777666654
No 442
>KOG0737|consensus
Probab=94.30 E-value=0.3 Score=42.27 Aligned_cols=56 Identities=18% Similarity=0.072 Sum_probs=34.2
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCC-CcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEK-PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+|.+.+=-+.+++.|++.-.-. -+|-.-.-...+...+.+++.||.|+|||.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 357888877777777776532211 11111111222334478999999999999876
No 443
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.29 E-value=0.19 Score=41.61 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.2
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQ 111 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~ 111 (258)
+-.|..++|.|+.|+|||... --+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhcccc
Confidence 457888999999999999643 334444433
No 444
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.28 E-value=0.1 Score=43.64 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=25.7
Q ss_pred cHHHHHHhhhhhc--CCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 71 SAIQQRAIIPCVR--GNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 71 ~~~Q~~~~~~l~~--g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
.+.|.+.+..+.. +..++|.|+||||||... ..++..+.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 4556666655443 345899999999999875 34444443
No 445
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.26 E-value=0.35 Score=42.66 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=20.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQN 112 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~ 112 (258)
.|.-.+|.||.|.|||..+ ..+.+.+..+
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I~~n 196 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSITTN 196 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHHHhh
Confidence 6677999999999999754 3355555443
No 446
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.26 E-value=0.43 Score=43.60 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=37.7
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
|..+++.|++|+|||+..+..+...+.+ +.+++|++ ..+...|....++.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN---KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3569999999999999776665555443 33688877 5666777777777765
No 447
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.20 E-value=0.069 Score=49.66 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=26.1
Q ss_pred cHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 71 SAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
.+.|...+..+... ..++++||||||||++. ..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 45555555554433 34889999999999875 45555553
No 448
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.20 E-value=0.25 Score=43.64 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.4
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
.-.|.++++.|+||+||++.+
T Consensus 98 ap~~~~vLi~GetGtGKel~A 118 (403)
T COG1221 98 APSGLPVLIIGETGTGKELFA 118 (403)
T ss_pred CCCCCcEEEecCCCccHHHHH
Confidence 457789999999999999876
No 449
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.19 E-value=0.028 Score=43.77 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=27.3
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCC---CCCCCccEEEEccchhhhc
Q psy4698 161 KLEAGAQVVVGTPGRVFDMISRGA---LSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 161 ~~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~l~~lVvDE~h~~~~ 203 (258)
.....++|+|++...|++-..+.. +.+ +-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 344458999999988876443322 223 346999999998754
No 450
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.032 Score=47.32 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.2
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
..|+++.||||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3479999999999998764
No 451
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.18 E-value=0.058 Score=49.08 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=13.8
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
.+++||-|.|||.++
T Consensus 41 YlfsG~RGvGKTt~A 55 (515)
T COG2812 41 YLFSGPRGVGKTTIA 55 (515)
T ss_pred hhhcCCCCcCchhHH
Confidence 699999999999976
No 452
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.17 E-value=0.66 Score=36.00 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=29.7
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
++|.|++|||||.-+...+.. .+.+++|+.-.........+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999876543322 234788887666665555554433
No 453
>PF12846 AAA_10: AAA-like domain
Probab=94.15 E-value=0.06 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.1
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHh
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQV 109 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l 109 (258)
++++|.|+||+|||......+.+.+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999988764444433
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.13 E-value=0.078 Score=48.30 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=26.4
Q ss_pred cHHHHHHhhhhhcCC--cEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 71 SAIQQRAIIPCVRGN--DVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~--~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
.+.|.+.+..+.... -++++||||||||... ..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 556666666655443 3789999999999875 33455554
No 455
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.12 E-value=0.092 Score=44.67 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.9
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999765
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.05 E-value=0.59 Score=38.29 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=25.6
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhh---------hccccceEEEEe
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVD---------QNIKECQALILA 122 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~---------~~~~~~~~lil~ 122 (258)
-.++.|+.|+|||...+..++.... ....+.+++|++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 4689999999999887665554321 112345788988
No 457
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.88 E-value=0.076 Score=49.58 Aligned_cols=50 Identities=20% Similarity=0.119 Sum_probs=40.2
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.++++.||||||||..+++|-+... +..++|+=|.-++........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4799999999999999999987663 2358888888888888877776654
No 458
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.86 E-value=0.088 Score=46.56 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=26.6
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
.-...+++++.|.||||||.+ +..++..+...+ .++||.=|.-+.
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g--~~~iI~D~kg~~ 55 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQIRARG--DRAIIYDPKGEF 55 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT---EEEEEEETTHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHHHHcC--CEEEEEECCchH
Confidence 345668899999999999974 466666664432 234444444333
No 459
>KOG0730|consensus
Probab=93.86 E-value=0.11 Score=48.03 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=40.0
Q ss_pred cccccccccccCcCCCCCCHHHHHHHHH---CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 37 LIETNWDHVAENFDDMELSEELLRGIYA---YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
+.+.-+.....+|++.|=-+.+++.|++ ....+|-.+.+.. +..-+-+++.||+|+|||+++
T Consensus 421 ~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 421 LREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred hhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 3333455566789999866777777653 2333444343333 233467999999999999976
No 460
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.86 E-value=0.23 Score=45.44 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred ccCcCCCCCCHHHHHHHHHC--CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 46 AENFDDMELSEELLRGIYAY--GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~--~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+|+++.-.+.+.+.+.+. .+..+..++..- ....+.+++.||+|+|||..+
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34677776555555444321 122222222211 122357999999999999875
No 461
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.84 E-value=0.093 Score=48.82 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
.+-+++++||+-.-+|......+.+.+....++.-+|..|-.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 344699999999888888888888888777666556665544
No 462
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.80 E-value=0.12 Score=44.54 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=30.9
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQ 130 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q 130 (258)
|+-+.|.||.|+|||...+..+...... +.+++|+.....+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHHH
Confidence 4668999999999998776555544332 3478888876555543
No 463
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.80 E-value=0.095 Score=48.90 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=31.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
+-+++|+||+-.-+|......+...+..+..++.+|..|--+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 346899999998888888888888887776666666666543
No 464
>KOG2227|consensus
Probab=93.78 E-value=0.24 Score=44.19 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=29.2
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE-eccHHHHHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL-APTRELAQQIQKV 134 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil-~P~~~l~~q~~~~ 134 (258)
.++.|+|.+|.|||.+... ++..+.....++.++++ |-+...+..++..
T Consensus 176 gSlYVsG~PGtgkt~~l~r-vl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALLSR-VLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cceEeeCCCCcchHHHHHH-HHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 5799999999999987532 33344444444343444 3333555555544
No 465
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.72 E-value=0.24 Score=46.93 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.+++-|++++... ...++|.++.|||||.+..--+.+.+... -...+++.++=|+..+.+...++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999665 45578888899999998877776666654 2334688888888888888888877654
No 466
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=93.71 E-value=0.08 Score=49.31 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=30.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
++-+++++||+-.-+|......+.+.++.+.++..+|..|--.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~ 535 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL 535 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 3456999999998778777777777777765555555555543
No 467
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.70 E-value=0.14 Score=51.52 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=46.2
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhcc--ccceEEEEeccHHHHHHHHHHHHH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNI--KECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~--~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
-.+.+++|.|..|||||.+...-++..+...+ .-.++++++-|+.-+.....++.+
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 45678999999999999998888888887743 445899999999988888776655
No 468
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.65 E-value=0.85 Score=44.56 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=17.2
Q ss_pred CcEEEEcccCCCcchHhHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~ 105 (258)
++.++.||+|.|||......+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 589999999999998874333
No 469
>PRK13764 ATPase; Provisional
Probab=93.63 E-value=0.11 Score=48.32 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=21.5
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhh
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQ 111 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~ 111 (258)
..+++++++|+||||||+.. ..++..+..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~ 283 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYAD 283 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 34678999999999999864 455555543
No 470
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.61 E-value=0.34 Score=41.54 Aligned_cols=54 Identities=7% Similarity=-0.021 Sum_probs=32.6
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhh---ccccceEEEEeccHHH-HHHHHHHHHHh
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQ---NIKECQALILAPTREL-AQQIQKVVIAL 138 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~---~~~~~~~lil~P~~~l-~~q~~~~~~~~ 138 (258)
.-+.|.|++|+|||...+..++..... .+.+.+++|+.-.... .++..+.++.+
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999997765555443322 2334589998754332 34444444444
No 471
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.55 E-value=0.049 Score=50.90 Aligned_cols=43 Identities=9% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
++-+++++||+=.-+|......+...+..+.++..+|..|--+
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 3456999999998888888888888777775555555555443
No 472
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.54 E-value=0.059 Score=51.46 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
++-+++|+||+=.-+|......+...+..+.++..+|..|--
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHr 659 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 456799999998888887888888888777665555555443
No 473
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.50 E-value=0.27 Score=39.76 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=28.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEeccH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPTR 125 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~~ 125 (258)
.|.-+.|.|++|+|||...+..+...+... +.+.+++|+....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456799999999999987765555443332 1124688887643
No 474
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.48 E-value=0.22 Score=41.55 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=27.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
.|.-++|.|++|+|||...+..+.+.+.+ +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 45669999999999998776655554443 346888873
No 475
>KOG0741|consensus
Probab=93.45 E-value=0.37 Score=43.86 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHh----hhhhcC--------CcEEEEcccCCCcchHhHHHHHHHhhhccccceE
Q psy4698 51 DMELSEELLRGIYAYGFEKPSAIQQRAI----IPCVRG--------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQA 118 (258)
Q Consensus 51 ~~~~~~~l~~~l~~~~~~~~~~~Q~~~~----~~l~~g--------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~ 118 (258)
.+|.+++-++.....|.-.-.+.-.+.+ ..+.+- -++++.||.|||||..+...++. + ..+-+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---S--~FPFv 567 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---S--DFPFV 567 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh---c--CCCeE
Confidence 4567777777776665433222222222 111111 25999999999999754322222 1 23455
Q ss_pred EEEecc
Q psy4698 119 LILAPT 124 (258)
Q Consensus 119 lil~P~ 124 (258)
=+++|.
T Consensus 568 KiiSpe 573 (744)
T KOG0741|consen 568 KIISPE 573 (744)
T ss_pred EEeChH
Confidence 666664
No 476
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.43 E-value=0.39 Score=44.25 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=30.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
++-+++++||+-.-+|......+...+..+.++.-+|..|--
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 516 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHR 516 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 445689999998888887788887777776555555555544
No 477
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=1.1 Score=39.28 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.8
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
.+++.||.|+|||..+.
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997764
No 478
>CHL00176 ftsH cell division protein; Validated
Probab=93.36 E-value=0.63 Score=43.94 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.1
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999875
No 479
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.34 E-value=0.16 Score=42.33 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=36.6
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
-.|+.++|.|++|+|||+-.+..+...+.. +-++++++- .+...+..+.+..++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~-~e~~~~l~~~~~~~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVST-EESPEELLENARSFG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 356789999999999998876666666555 235777763 444555555555544
No 480
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.32 E-value=0.11 Score=41.31 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=22.3
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
++|+||||||||+.. ..++..+... .+.+++.+--
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~-~~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN-KTHHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc-CCcEEEEEcC
Confidence 789999999999875 3344444432 2235555544
No 481
>PF14516 AAA_35: AAA-like domain
Probab=93.31 E-value=0.48 Score=41.03 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=35.7
Q ss_pred HHHHHHhhhhhc-CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 72 AIQQRAIIPCVR-GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 72 ~~Q~~~~~~l~~-g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+...+++..+.+ |..+.|.||-.+|||... ..+++.+... +.+++++-
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSll-~~l~~~l~~~--~~~~v~id 66 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSLL-LRLLERLQQQ--GYRCVYID 66 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHHH-HHHHHHHHHC--CCEEEEEE
Confidence 488899989887 999999999999999874 4455555543 34566554
No 482
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.26 E-value=0.83 Score=37.69 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred hhcCC-cEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 81 CVRGN-DVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 81 l~~g~-~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
+..|+ -+.++|+-|||||...- .++..+.
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 44555 68999999999998865 4444444
No 483
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.18 E-value=0.22 Score=50.34 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=45.4
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
-..++++|.|+.|||||.+...-++..+..+....++++++-|+.-+.++..++..
T Consensus 8 dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~ 63 (1141)
T TIGR02784 8 DPKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFD 63 (1141)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHH
Confidence 34578999999999999998887777776655556899999999998888766554
No 484
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.28 Score=41.12 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.4
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.++++.||+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 469999999999998653
No 485
>KOG0344|consensus
Probab=93.08 E-value=2.3 Score=39.05 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=71.0
Q ss_pred cCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHhcC-CcE
Q psy4698 93 SGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLEAG-AQV 168 (258)
Q Consensus 93 tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~I 168 (258)
.+.||+..-++++.+.+..+ -.+.++|.+-+.+-|.|.+..+. .+.++.+...++.....+. ....+.| ..+
T Consensus 366 vF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred eeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 46788888877777776666 45678999999999999998776 3345677777777544332 2333333 789
Q ss_pred EEeChHHHHHHHhcCCCCCCCccEEEEccch
Q psy4698 169 VVGTPGRVFDMISRGALSTKQIRMFVLDEAD 199 (258)
Q Consensus 169 lv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 199 (258)
+||| +++.++ ++++++.+||-++.-
T Consensus 442 LicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 442 LICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred EEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 9999 677776 789999999998754
No 486
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=93.04 E-value=0.17 Score=40.33 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=19.3
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
....+++|.|.||||||.+....+...+.
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 34458999999999999887655555544
No 487
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.03 E-value=0.089 Score=43.90 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHHhhhhhcCCcEEEEcccCCCcchHhH
Q psy4698 75 QRAIIPCVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 75 ~~~~~~l~~g~~~li~~~tGsGKT~~~l 102 (258)
++++..+..|+++++.|++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4455567788999999999999998764
No 488
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.96 E-value=0.069 Score=33.98 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+.++|.|++|||||...
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3557999999999999864
No 489
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.83 E-value=0.14 Score=43.87 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCcHHHHH-HhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 69 KPSAIQQR-AIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 69 ~~~~~Q~~-~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.+.+.|.. .+-++..+++++++|+||||||... .+++..+.... |++.+=-+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~l-nall~~Ip~~~---rivtIEdt 179 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTLL-NALLDFIPPEE---RIVTIEDT 179 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHHhCCchh---cEEEEecc
Confidence 45555544 4445677899999999999999863 55555544332 45555433
No 490
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.82 E-value=0.15 Score=48.18 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=37.4
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.++++.||||||||..+++|-+..+. ..++|+=|.-++........++.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~-----gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK-----GSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC-----CCEEEEeCCchHHHHHHHHHHhCC
Confidence 47999999999999999988866532 257777788777776665555543
No 491
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.78 E-value=0.36 Score=39.26 Aligned_cols=42 Identities=17% Similarity=0.036 Sum_probs=27.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEecc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPT 124 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~ 124 (258)
.|.-+.+.|++|+|||...+..+....... +.+.+++++.-.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 456689999999999987765554433222 112468888753
No 492
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.74 E-value=0.48 Score=35.58 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=22.8
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
+-+++++||.-.-++......+...++.+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 45699999998777777777777777776
No 493
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=92.74 E-value=0.13 Score=48.62 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhh--hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH
Q psy4698 56 EELLRGIYAYGFEKPSAIQQRAIIP--CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA 128 (258)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~Q~~~~~~--l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~ 128 (258)
..+.+.+++.+-..+ +..--+|. -.+.+++++.|.||||||.+. .-++..+... +.++||.=|.-+..
T Consensus 157 ~~l~k~lk~~~~~s~--i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~R--GdrAIIyD~~GeFv 226 (732)
T PRK13700 157 KDVARMLKKDGKDSD--IRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQR--GDMVVIYDRSGEFV 226 (732)
T ss_pred HHHHHHHHhcCCCCC--eeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHHc--CCeEEEEeCCCchH
Confidence 566667776654333 33333333 345689999999999999964 5566655443 23455444444433
No 494
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.72 E-value=0.35 Score=45.60 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH--HHHHHHHHHHHhcCC
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE--LAQQIQKVVIALGDF 141 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~--l~~q~~~~~~~~~~~ 141 (258)
..+++|.|+||+|||..+...+.+.+..+ ..++++=|... +.......++..+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g---~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRG---DVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 35799999999999988755444444432 35666667643 777777777776644
No 495
>PRK07773 replicative DNA helicase; Validated
Probab=92.69 E-value=0.63 Score=45.82 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=73.1
Q ss_pred HHhhhhhcC----CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEEC
Q psy4698 76 RAIIPCVRG----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIG 151 (258)
Q Consensus 76 ~~~~~l~~g----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 151 (258)
..++.+..| .-++|.|.+|+|||...+--+.+..... +..++|++ .-.-..|+..++.......+... ...
T Consensus 205 ~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~--~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~--i~~ 279 (886)
T PRK07773 205 TELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRH--RLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSD--MRS 279 (886)
T ss_pred hHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhc--CCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHH--Hhc
Confidence 444444443 4589999999999987765555544332 23466665 33344555555443322222111 111
Q ss_pred CcchHHHHHHHh------cCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHHh
Q psy4698 152 GTIVRDDIRKLE------AGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR----GFKDQIYDVFKH 216 (258)
Q Consensus 152 ~~~~~~~~~~~~------~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~----~~~~~~~~~~~~ 216 (258)
+.-...++..+. ....+.|. |++.+...+.+-. .-.++++||||=.+.|... +....+..+.+.
T Consensus 280 g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~ 358 (886)
T PRK07773 280 GRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLR-QEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRH 358 (886)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHH
Confidence 111112221111 12456663 4555543332210 0135889999999977422 123344444444
Q ss_pred CC-----CCccEEEEEee
Q psy4698 217 LN-----NDVQVILLSAT 229 (258)
Q Consensus 217 l~-----~~~~~i~~SAT 229 (258)
++ -++.+|++|..
T Consensus 359 LK~lAkel~vpvi~lsQL 376 (886)
T PRK07773 359 LKLLAKELEVPVVALSQL 376 (886)
T ss_pred HHHHHHHHCCcEEEeccc
Confidence 43 25666666643
No 496
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.69 E-value=0.39 Score=39.01 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=33.1
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
+-++|+.||----+|......+..++..+.......++=+|-...+..
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 445899999987778888888889998886653333334555554444
No 497
>PRK10263 DNA translocase FtsK; Provisional
Probab=92.64 E-value=0.95 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=19.6
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
+++|.|.||||||.+.-..++..+.
T Consensus 1012 HLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999986555554444
No 498
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.35 Score=43.97 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=38.2
Q ss_pred EEEeChHHHHHHHhcCCCC---------------CCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeC
Q psy4698 168 VVVGTPGRVFDMISRGALS---------------TKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 168 Ilv~Tp~~l~~~l~~~~~~---------------~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
.+-.-|+.+..++..++.. +++-.++++||.-.=+|..-..++...+..--.+..+++.|--+
T Consensus 456 l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 456 LLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3444566666555554333 34567999999998778777777665543332344466655544
No 499
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.62 E-value=0.098 Score=48.94 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
++-.++++||.-.-+|......+...+..+.+++.+|.+|--
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr 534 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHR 534 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 344699999999888887778887777776555555555544
No 500
>PHA02542 41 41 helicase; Provisional
Probab=92.60 E-value=0.6 Score=42.48 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=24.5
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
.-+++.|.+|.|||..++--+..... .+..++|+.
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~---~g~~Vl~fS 225 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQ---QGYNVLYIS 225 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEEe
Confidence 34889999999999887665555542 233576665
Done!