Query psy4698
Match_columns 258
No_of_seqs 158 out of 2019
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 23:33:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 1.6E-42 5.3E-47 285.2 24.0 215 41-255 23-242 (242)
2 1qde_A EIF4A, translation init 100.0 7.7E-42 2.6E-46 277.6 22.7 219 39-258 6-224 (224)
3 3bor_A Human initiation factor 100.0 4.9E-42 1.7E-46 281.4 20.7 219 35-253 18-237 (237)
4 3ber_A Probable ATP-dependent 100.0 9.8E-41 3.4E-45 275.7 24.0 208 44-251 40-248 (249)
5 1vec_A ATP-dependent RNA helic 100.0 2.2E-40 7.5E-45 265.6 25.2 202 47-248 3-205 (206)
6 3iuy_A Probable ATP-dependent 100.0 8.9E-41 3E-45 272.2 22.4 208 42-250 14-228 (228)
7 2oxc_A Probable ATP-dependent 100.0 2.4E-40 8.1E-45 270.2 22.7 208 43-251 20-229 (230)
8 3fmo_B ATP-dependent RNA helic 100.0 2E-40 6.9E-45 280.8 22.8 206 45-253 90-300 (300)
9 1q0u_A Bstdead; DEAD protein, 100.0 8.5E-41 2.9E-45 270.8 19.4 206 47-252 4-213 (219)
10 2gxq_A Heat resistant RNA depe 100.0 1.3E-39 4.5E-44 261.1 23.9 202 48-251 2-206 (207)
11 2pl3_A Probable ATP-dependent 100.0 2.6E-39 8.7E-44 264.9 25.7 208 45-253 23-235 (236)
12 1wrb_A DJVLGB; RNA helicase, D 100.0 4.3E-40 1.5E-44 272.3 20.2 212 45-256 21-245 (253)
13 1t6n_A Probable ATP-dependent 100.0 3.6E-39 1.2E-43 261.2 23.1 204 47-250 14-220 (220)
14 3ly5_A ATP-dependent RNA helic 100.0 3.4E-39 1.1E-43 268.4 23.2 200 47-246 52-258 (262)
15 2db3_A ATP-dependent RNA helic 100.0 3.2E-38 1.1E-42 280.3 25.6 214 40-253 49-269 (434)
16 3dkp_A Probable ATP-dependent 100.0 2.8E-38 9.6E-43 260.1 19.6 211 43-253 21-243 (245)
17 3eiq_A Eukaryotic initiation f 100.0 6.9E-37 2.4E-41 269.2 23.4 226 31-256 24-250 (414)
18 2j0s_A ATP-dependent RNA helic 100.0 8.9E-37 3E-41 268.6 22.9 212 45-256 35-246 (410)
19 2i4i_A ATP-dependent RNA helic 100.0 7.5E-36 2.6E-40 263.0 25.4 212 42-253 10-243 (417)
20 1fuu_A Yeast initiation factor 100.0 4.2E-35 1.4E-39 256.1 22.0 215 40-255 14-228 (394)
21 1s2m_A Putative ATP-dependent 100.0 1.5E-34 5.2E-39 253.4 22.8 207 46-252 20-226 (400)
22 1xti_A Probable ATP-dependent 100.0 5E-34 1.7E-38 249.2 23.0 207 47-253 8-217 (391)
23 3pey_A ATP-dependent RNA helic 100.0 2E-33 6.8E-38 245.3 23.1 206 46-255 4-212 (395)
24 3fht_A ATP-dependent RNA helic 100.0 2.6E-33 9E-38 246.1 22.0 208 45-255 23-235 (412)
25 3fmp_B ATP-dependent RNA helic 100.0 1.8E-33 6.1E-38 252.7 19.9 208 46-256 91-303 (479)
26 1hv8_A Putative ATP-dependent 100.0 1.1E-32 3.7E-37 238.4 23.4 203 47-251 6-209 (367)
27 2z0m_A 337AA long hypothetical 100.0 1.3E-31 4.3E-36 229.2 23.8 190 54-250 1-190 (337)
28 3sqw_A ATP-dependent RNA helic 100.0 2E-32 6.9E-37 251.2 16.8 200 53-252 27-245 (579)
29 3i5x_A ATP-dependent RNA helic 100.0 3.1E-32 1.1E-36 249.1 16.7 199 53-251 78-295 (563)
30 3fho_A ATP-dependent RNA helic 100.0 1.4E-31 4.7E-36 242.0 15.6 204 48-255 120-326 (508)
31 2zj8_A DNA helicase, putative 100.0 7.3E-29 2.5E-33 232.9 17.0 187 48-241 2-189 (720)
32 3oiy_A Reverse gyrase helicase 100.0 4.9E-29 1.7E-33 219.8 13.9 178 57-241 9-216 (414)
33 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-28 4.7E-33 230.9 16.5 187 47-241 8-195 (715)
34 2p6r_A Afuhel308 helicase; pro 100.0 7.4E-29 2.5E-33 232.2 12.2 186 48-241 2-192 (702)
35 3l9o_A ATP-dependent RNA helic 100.0 1.7E-28 5.8E-33 238.0 13.6 192 48-253 163-356 (1108)
36 2v1x_A ATP-dependent DNA helic 100.0 1.9E-27 6.5E-32 217.9 17.6 185 50-245 24-225 (591)
37 3llm_A ATP-dependent RNA helic 100.0 9.2E-28 3.2E-32 196.2 13.6 225 8-247 3-233 (235)
38 2ykg_A Probable ATP-dependent 100.0 3E-27 1E-31 221.0 18.4 172 60-231 4-184 (696)
39 4a2p_A RIG-I, retinoic acid in 99.9 4.5E-27 1.6E-31 214.0 17.9 166 66-231 4-177 (556)
40 3tbk_A RIG-I helicase domain; 99.9 6.5E-27 2.2E-31 212.7 15.9 164 69-232 4-176 (555)
41 3b6e_A Interferon-induced heli 99.9 2.1E-27 7.3E-32 190.9 10.7 164 65-229 29-216 (216)
42 4a2q_A RIG-I, retinoic acid in 99.9 2.7E-26 9.2E-31 217.6 18.7 167 65-231 244-418 (797)
43 1oyw_A RECQ helicase, ATP-depe 99.9 1.7E-26 6E-31 209.1 14.9 192 47-249 2-205 (523)
44 4ddu_A Reverse gyrase; topoiso 99.9 1.9E-26 6.6E-31 223.6 16.1 176 60-242 69-274 (1104)
45 2xgj_A ATP-dependent RNA helic 99.9 7.6E-26 2.6E-30 217.8 19.6 173 65-252 83-257 (1010)
46 1gku_B Reverse gyrase, TOP-RG; 99.9 3.3E-26 1.1E-30 221.7 12.3 179 60-251 48-245 (1054)
47 4a2w_A RIG-I, retinoic acid in 99.9 2.5E-25 8.6E-30 213.7 16.3 167 65-231 244-418 (936)
48 1wp9_A ATP-dependent RNA helic 99.9 1.4E-24 4.7E-29 193.5 20.0 169 69-241 9-180 (494)
49 4f92_B U5 small nuclear ribonu 99.9 1.8E-25 6.3E-30 223.9 15.0 172 66-242 76-265 (1724)
50 4f92_B U5 small nuclear ribonu 99.9 4.4E-25 1.5E-29 221.1 16.8 185 54-244 911-1106(1724)
51 4a4z_A Antiviral helicase SKI2 99.9 1.6E-25 5.5E-30 215.5 12.8 164 65-242 36-199 (997)
52 4gl2_A Interferon-induced heli 99.9 4.7E-25 1.6E-29 206.3 9.9 163 69-232 7-193 (699)
53 1rif_A DAR protein, DNA helica 99.9 1.6E-24 5.4E-29 181.7 10.1 159 69-239 113-271 (282)
54 1tf5_A Preprotein translocase 99.9 2.3E-23 7.8E-28 193.3 14.0 161 64-232 79-288 (844)
55 2oca_A DAR protein, ATP-depend 99.9 1.3E-23 4.6E-28 189.7 11.2 157 68-236 112-268 (510)
56 1gm5_A RECG; helicase, replica 99.9 1.1E-22 3.7E-27 190.8 16.7 167 56-236 356-532 (780)
57 2eyq_A TRCF, transcription-rep 99.9 5.2E-22 1.8E-26 193.6 20.3 187 51-251 585-782 (1151)
58 1nkt_A Preprotein translocase 99.9 2.5E-22 8.7E-27 186.4 15.6 160 65-232 108-316 (922)
59 2fsf_A Preprotein translocase 99.9 9.5E-23 3.2E-27 188.8 12.1 147 65-219 71-240 (853)
60 2fwr_A DNA repair protein RAD2 99.9 2.3E-21 7.8E-26 173.5 14.2 136 69-231 93-229 (472)
61 2xau_A PRE-mRNA-splicing facto 99.9 1.7E-20 5.9E-25 176.5 18.6 198 45-256 70-273 (773)
62 2fz4_A DNA repair protein RAD2 99.8 1.6E-20 5.5E-25 153.4 15.0 137 69-232 93-230 (237)
63 2whx_A Serine protease/ntpase/ 99.8 2E-22 6.9E-27 185.3 3.6 181 52-251 155-336 (618)
64 2jlq_A Serine protease subunit 99.8 1.6E-21 5.4E-26 173.7 8.3 166 66-250 1-168 (451)
65 3o8b_A HCV NS3 protease/helica 99.8 3.1E-21 1.1E-25 177.0 9.5 145 69-233 217-363 (666)
66 3h1t_A Type I site-specific re 99.8 1.6E-20 5.4E-25 172.6 8.0 150 69-233 178-344 (590)
67 2ipc_A Preprotein translocase 99.8 4.2E-19 1.4E-23 164.7 14.6 131 65-203 76-216 (997)
68 2z83_A Helicase/nucleoside tri 99.8 2.2E-19 7.6E-24 160.1 8.0 151 77-248 14-169 (459)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.4E-18 4.7E-23 167.1 11.9 153 69-232 271-440 (1038)
70 1yks_A Genome polyprotein [con 99.8 6.1E-20 2.1E-24 162.9 1.9 136 80-238 4-148 (440)
71 2v6i_A RNA helicase; membrane, 99.8 3.1E-18 1.1E-22 151.6 12.3 138 83-235 1-139 (431)
72 2wv9_A Flavivirin protease NS2 99.8 2.8E-19 9.5E-24 165.6 5.6 154 69-237 215-380 (673)
73 3crv_A XPD/RAD3 related DNA he 99.7 4.4E-17 1.5E-21 148.4 12.3 129 69-203 3-187 (551)
74 1z63_A Helicase of the SNF2/RA 99.7 3.3E-17 1.1E-21 147.5 10.3 148 69-231 37-188 (500)
75 3rc3_A ATP-dependent RNA helic 99.6 3.5E-16 1.2E-20 144.7 10.0 146 80-248 151-297 (677)
76 3mwy_W Chromo domain-containin 99.6 8.8E-16 3E-20 145.5 12.1 154 69-230 236-405 (800)
77 3dmq_A RNA polymerase-associat 99.6 3.7E-16 1.3E-20 150.5 6.7 158 69-231 153-317 (968)
78 1z3i_X Similar to RAD54-like; 99.6 1E-14 3.5E-19 135.1 15.7 155 69-230 55-230 (644)
79 2vl7_A XPD; helicase, unknown 99.6 8.7E-16 3E-20 139.5 7.6 127 65-202 4-188 (540)
80 4a15_A XPD helicase, ATP-depen 99.4 6.2E-13 2.1E-17 122.4 10.2 77 69-147 3-83 (620)
81 3jux_A Protein translocase sub 99.2 1.4E-10 4.7E-15 106.4 14.0 131 65-202 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.1 2.4E-10 8.1E-15 105.1 8.6 146 71-229 151-298 (608)
83 3upu_A ATP-dependent DNA helic 98.6 3.8E-07 1.3E-11 81.0 11.7 133 65-227 21-162 (459)
84 3e1s_A Exodeoxyribonuclease V, 98.5 8E-07 2.7E-11 81.0 12.6 122 69-228 189-314 (574)
85 2gk6_A Regulator of nonsense t 98.5 2.3E-06 7.7E-11 78.9 15.6 69 68-138 179-247 (624)
86 2xzl_A ATP-dependent helicase 98.5 2.6E-06 8.8E-11 80.5 16.0 70 68-139 359-428 (802)
87 4b3f_X DNA-binding protein smu 98.5 3.9E-07 1.3E-11 84.3 8.7 68 69-139 189-257 (646)
88 2wjy_A Regulator of nonsense t 98.4 5.5E-06 1.9E-10 78.3 15.4 69 68-138 355-423 (800)
89 2o0j_A Terminase, DNA packagin 97.7 0.00074 2.5E-08 58.3 14.2 71 69-140 163-233 (385)
90 3vkw_A Replicase large subunit 97.6 0.00033 1.1E-08 61.3 10.1 85 85-201 162-246 (446)
91 1xx6_A Thymidine kinase; NESG, 97.6 0.00022 7.5E-09 55.5 7.6 40 83-125 7-46 (191)
92 3cpe_A Terminase, DNA packagin 97.6 0.00039 1.3E-08 63.6 10.4 119 69-202 163-286 (592)
93 3lfu_A DNA helicase II; SF1 he 97.5 0.00023 7.9E-09 65.6 8.6 70 68-139 8-78 (647)
94 2orw_A Thymidine kinase; TMTK, 97.5 0.00023 8E-09 55.0 7.3 39 84-125 3-41 (184)
95 3ec2_A DNA replication protein 97.5 0.00063 2.2E-08 52.0 9.6 19 83-101 37-55 (180)
96 2b8t_A Thymidine kinase; deoxy 97.4 0.00028 9.4E-09 56.3 6.7 91 83-201 11-101 (223)
97 1c4o_A DNA nucleotide excision 97.3 0.00066 2.3E-08 62.9 8.9 69 66-141 6-79 (664)
98 2j9r_A Thymidine kinase; TK1, 97.3 0.00057 2E-08 53.9 6.8 40 84-126 28-67 (214)
99 1l8q_A Chromosomal replication 97.3 0.0022 7.7E-08 53.8 11.0 36 84-122 37-72 (324)
100 1uaa_A REP helicase, protein ( 97.3 0.00056 1.9E-08 63.5 7.8 69 69-139 2-71 (673)
101 2chg_A Replication factor C sm 97.3 0.004 1.4E-07 48.5 11.7 41 188-229 101-141 (226)
102 2kjq_A DNAA-related protein; s 97.2 0.00022 7.5E-09 53.2 3.9 19 83-101 35-53 (149)
103 2orv_A Thymidine kinase; TP4A 97.2 0.001 3.6E-08 53.0 7.8 40 83-125 18-57 (234)
104 3u4q_A ATP-dependent helicase/ 97.2 0.00062 2.1E-08 67.4 7.9 68 69-138 10-80 (1232)
105 3te6_A Regulatory protein SIR3 97.2 0.00064 2.2E-08 57.1 6.8 26 84-110 45-70 (318)
106 3e2i_A Thymidine kinase; Zn-bi 97.2 0.0012 4.2E-08 52.0 7.7 99 83-214 27-125 (219)
107 1pjr_A PCRA; DNA repair, DNA r 97.1 0.0013 4.3E-08 61.7 8.5 69 68-138 10-79 (724)
108 2z4s_A Chromosomal replication 97.1 0.0043 1.5E-07 54.5 10.9 39 84-123 130-168 (440)
109 2v1u_A Cell division control p 97.0 0.0025 8.4E-08 54.4 9.1 19 83-101 43-61 (387)
110 1a5t_A Delta prime, HOLB; zinc 97.0 0.0018 6.2E-08 54.7 7.4 34 71-104 4-44 (334)
111 2qby_B CDC6 homolog 3, cell di 96.9 0.0038 1.3E-07 53.4 9.3 18 84-101 45-62 (384)
112 1iqp_A RFCS; clamp loader, ext 96.9 0.005 1.7E-07 51.3 9.3 39 188-227 109-147 (327)
113 3n70_A Transport activator; si 96.9 0.0062 2.1E-07 44.7 8.8 38 191-229 78-115 (145)
114 1w4r_A Thymidine kinase; type 96.8 0.0033 1.1E-07 48.8 7.2 39 83-124 19-57 (195)
115 1d2n_A N-ethylmaleimide-sensit 96.8 0.024 8.3E-07 46.1 13.0 18 85-102 65-82 (272)
116 3kl4_A SRP54, signal recogniti 96.8 0.0055 1.9E-07 53.6 9.2 132 85-242 98-235 (433)
117 3bos_A Putative DNA replicatio 96.8 0.0024 8.2E-08 50.6 6.2 19 83-101 51-69 (242)
118 1sxj_D Activator 1 41 kDa subu 96.7 0.0085 2.9E-07 50.5 9.7 40 188-228 132-171 (353)
119 3co5_A Putative two-component 96.7 0.0018 6.3E-08 47.6 4.8 21 81-101 24-44 (143)
120 1sxj_E Activator 1 40 kDa subu 96.6 0.0071 2.4E-07 51.2 8.5 43 188-231 133-175 (354)
121 2zpa_A Uncharacterized protein 96.6 0.0049 1.7E-07 56.7 7.8 114 69-232 175-290 (671)
122 2qgz_A Helicase loader, putati 96.6 0.0072 2.5E-07 50.5 8.3 19 84-102 152-170 (308)
123 2d7d_A Uvrabc system protein B 96.5 0.011 3.6E-07 54.8 9.7 67 69-141 12-83 (661)
124 3syl_A Protein CBBX; photosynt 96.5 0.0019 6.5E-08 53.6 4.3 18 84-101 67-84 (309)
125 3u61_B DNA polymerase accessor 96.5 0.0025 8.5E-08 53.4 5.0 41 189-229 105-145 (324)
126 1fnn_A CDC6P, cell division co 96.5 0.0039 1.3E-07 53.3 6.3 35 86-122 46-80 (389)
127 2qby_A CDC6 homolog 1, cell di 96.5 0.018 6.2E-07 48.9 10.3 38 84-122 45-83 (386)
128 3h4m_A Proteasome-activating n 96.5 0.013 4.5E-07 47.9 9.1 53 47-101 14-68 (285)
129 1njg_A DNA polymerase III subu 96.4 0.053 1.8E-06 42.4 12.2 39 189-228 126-164 (250)
130 2w58_A DNAI, primosome compone 96.4 0.026 8.7E-07 43.6 9.8 17 85-101 55-71 (202)
131 1sxj_B Activator 1 37 kDa subu 96.4 0.014 4.7E-07 48.5 8.6 39 189-228 107-145 (323)
132 1jbk_A CLPB protein; beta barr 96.2 0.17 5.8E-06 37.8 13.4 18 84-101 43-60 (195)
133 1sxj_C Activator 1 40 kDa subu 96.2 0.048 1.6E-06 45.9 11.0 39 188-227 109-147 (340)
134 2dr3_A UPF0273 protein PH0284; 96.1 0.039 1.3E-06 43.8 9.7 52 82-137 21-72 (247)
135 3cf0_A Transitional endoplasmi 96.0 0.012 4E-07 48.9 6.3 54 47-101 12-66 (301)
136 2p65_A Hypothetical protein PF 96.0 0.029 9.8E-07 42.2 8.0 19 84-102 43-61 (187)
137 2q6t_A DNAB replication FORK h 96.0 0.019 6.6E-07 50.4 7.8 140 83-229 199-362 (444)
138 2chq_A Replication factor C sm 96.0 0.017 5.6E-07 47.9 7.0 16 86-101 40-55 (319)
139 2r6a_A DNAB helicase, replicat 95.9 0.049 1.7E-06 47.9 10.3 42 81-124 200-241 (454)
140 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.044 1.5E-06 42.9 8.8 40 81-123 20-59 (235)
141 3dm5_A SRP54, signal recogniti 95.8 0.17 5.7E-06 44.4 12.7 56 85-146 101-158 (443)
142 1g5t_A COB(I)alamin adenosyltr 95.7 0.037 1.3E-06 42.9 7.3 139 85-238 29-171 (196)
143 4a1f_A DNAB helicase, replicat 95.6 0.0047 1.6E-07 52.3 2.4 40 81-123 43-82 (338)
144 4b4t_J 26S protease regulatory 95.6 0.09 3.1E-06 45.4 10.4 53 46-101 144-199 (405)
145 2gno_A DNA polymerase III, gam 95.6 0.059 2E-06 44.8 8.9 50 188-239 81-130 (305)
146 4b4t_M 26S protease regulatory 95.4 0.053 1.8E-06 47.4 8.3 54 45-101 176-232 (434)
147 1sxj_A Activator 1 95 kDa subu 95.4 0.032 1.1E-06 50.0 7.1 41 189-231 148-190 (516)
148 1jr3_A DNA polymerase III subu 95.4 0.066 2.3E-06 45.3 8.7 39 188-227 118-156 (373)
149 1w5s_A Origin recognition comp 95.3 0.019 6.4E-07 49.4 5.1 18 85-102 51-70 (412)
150 3eie_A Vacuolar protein sortin 95.3 0.092 3.1E-06 43.8 9.2 49 47-101 15-68 (322)
151 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.083 2.8E-06 42.3 8.7 19 83-101 38-56 (262)
152 3pfi_A Holliday junction ATP-d 95.3 0.065 2.2E-06 44.9 8.3 17 85-101 56-72 (338)
153 1cr0_A DNA primase/helicase; R 95.3 0.023 7.9E-07 46.8 5.3 41 81-123 32-72 (296)
154 3vfd_A Spastin; ATPase, microt 95.2 0.079 2.7E-06 45.5 8.7 18 84-101 148-165 (389)
155 4b4t_K 26S protease regulatory 95.1 0.15 5.2E-06 44.4 10.3 53 46-101 168-223 (428)
156 3bh0_A DNAB-like replicative h 95.1 0.064 2.2E-06 44.8 7.7 51 81-135 65-115 (315)
157 1n0w_A DNA repair protein RAD5 95.0 0.12 4.1E-06 40.8 8.6 43 81-123 21-66 (243)
158 3hu3_A Transitional endoplasmi 94.6 0.094 3.2E-06 46.6 7.8 42 191-232 299-350 (489)
159 4b4t_H 26S protease regulatory 94.6 0.034 1.1E-06 48.9 4.7 53 46-101 205-260 (467)
160 1hqc_A RUVB; extended AAA-ATPa 94.6 0.085 2.9E-06 43.7 7.1 18 84-101 38-55 (324)
161 3pvs_A Replication-associated 94.5 0.053 1.8E-06 47.7 5.8 17 85-101 51-67 (447)
162 2ehv_A Hypothetical protein PH 94.3 0.04 1.4E-06 43.8 4.4 25 81-105 27-51 (251)
163 3bgw_A DNAB-like replicative h 94.1 0.059 2E-06 47.3 5.3 39 82-123 195-233 (444)
164 1nlf_A Regulatory protein REPA 93.9 0.5 1.7E-05 38.3 10.2 27 80-106 26-52 (279)
165 2hjv_A ATP-dependent RNA helic 93.8 0.83 2.8E-05 33.7 10.6 75 114-198 34-112 (163)
166 2ce7_A Cell division protein F 93.6 0.12 4.2E-06 45.7 6.3 17 85-101 50-66 (476)
167 1fuk_A Eukaryotic initiation f 93.0 1.4 4.7E-05 32.5 10.6 75 114-198 29-107 (165)
168 3lda_A DNA repair protein RAD5 92.8 0.45 1.5E-05 41.1 8.7 40 85-124 179-221 (400)
169 3eaq_A Heat resistant RNA depe 92.7 1.1 3.8E-05 34.7 10.2 72 114-195 30-105 (212)
170 2rb4_A ATP-dependent RNA helic 92.7 0.99 3.4E-05 33.7 9.6 74 114-197 33-110 (175)
171 3m6a_A ATP-dependent protease 92.6 0.14 4.9E-06 46.1 5.4 19 83-101 107-125 (543)
172 1ls1_A Signal recognition part 92.6 1.1 3.8E-05 36.8 10.5 37 83-122 97-133 (295)
173 1xp8_A RECA protein, recombina 92.6 0.23 7.9E-06 42.4 6.4 39 83-124 73-111 (366)
174 2px0_A Flagellar biosynthesis 92.4 0.39 1.3E-05 39.7 7.4 19 84-102 105-123 (296)
175 3cmu_A Protein RECA, recombina 92.3 0.12 4E-06 53.4 4.7 41 83-126 1426-1466(2050)
176 3e70_C DPA, signal recognition 92.1 1.5 5.2E-05 36.7 10.8 53 190-242 212-265 (328)
177 1qvr_A CLPB protein; coiled co 92.1 0.23 7.7E-06 47.3 6.3 18 85-102 192-209 (854)
178 2l8b_A Protein TRAI, DNA helic 92.0 0.15 5.1E-06 38.9 4.0 120 71-229 36-158 (189)
179 3pxi_A Negative regulator of g 92.0 0.52 1.8E-05 44.2 8.6 16 86-101 523-538 (758)
180 3hjh_A Transcription-repair-co 92.0 0.62 2.1E-05 41.3 8.6 52 83-140 13-64 (483)
181 1t5i_A C_terminal domain of A 91.8 1.3 4.4E-05 33.0 9.2 75 114-198 30-108 (172)
182 3cf2_A TER ATPase, transitiona 91.7 0.25 8.5E-06 46.6 5.9 17 85-101 239-255 (806)
183 3io5_A Recombination and repai 91.4 0.22 7.4E-06 41.7 4.7 90 86-202 30-124 (333)
184 2oap_1 GSPE-2, type II secreti 91.4 0.15 5E-06 45.7 4.0 39 61-101 238-277 (511)
185 2eyu_A Twitching motility prot 91.4 0.14 4.9E-06 41.5 3.6 21 81-101 22-42 (261)
186 3b85_A Phosphate starvation-in 91.4 0.24 8.3E-06 38.6 4.8 32 70-101 8-39 (208)
187 1ypw_A Transitional endoplasmi 91.3 0.7 2.4E-05 43.7 8.7 20 82-101 236-255 (806)
188 1r6b_X CLPA protein; AAA+, N-t 91.0 0.6 2E-05 43.7 7.9 19 84-102 207-225 (758)
189 1e9r_A Conjugal transfer prote 90.7 0.23 8E-06 43.2 4.5 26 83-109 52-77 (437)
190 2ewv_A Twitching motility prot 90.6 0.17 5.8E-06 43.3 3.5 21 81-101 133-153 (372)
191 2zts_A Putative uncharacterize 90.4 0.23 7.8E-06 39.2 3.9 52 83-137 29-80 (251)
192 2jgn_A DBX, DDX3, ATP-dependen 90.2 1.6 5.6E-05 32.9 8.5 74 114-197 45-122 (185)
193 3u4q_B ATP-dependent helicase/ 90.1 0.21 7E-06 49.3 4.0 41 88-128 5-45 (1166)
194 3jvv_A Twitching mobility prot 90.0 0.22 7.6E-06 42.3 3.6 20 82-101 121-140 (356)
195 4f4c_A Multidrug resistance pr 89.9 0.11 3.9E-06 51.8 2.0 40 189-228 1235-1274(1321)
196 2p6n_A ATP-dependent RNA helic 89.8 5.3 0.00018 30.3 11.2 72 116-197 55-130 (191)
197 1kgd_A CASK, peripheral plasma 89.6 0.13 4.3E-06 39.0 1.6 19 83-101 4-22 (180)
198 3vaa_A Shikimate kinase, SK; s 89.4 0.14 4.8E-06 39.4 1.8 21 82-102 23-43 (199)
199 3pey_A ATP-dependent RNA helic 89.4 1.9 6.5E-05 36.1 9.2 136 109-254 237-381 (395)
200 1p9r_A General secretion pathw 89.3 0.58 2E-05 40.6 5.8 19 83-101 166-184 (418)
201 3i5x_A ATP-dependent RNA helic 89.2 4.6 0.00016 36.0 12.0 87 105-198 329-419 (563)
202 3nwn_A Kinesin-like protein KI 89.0 0.19 6.5E-06 42.7 2.5 25 77-101 96-122 (359)
203 3i32_A Heat resistant RNA depe 88.9 2.7 9.3E-05 34.6 9.5 73 115-197 28-104 (300)
204 2gza_A Type IV secretion syste 88.9 0.21 7.2E-06 42.5 2.7 21 81-101 172-192 (361)
205 3hws_A ATP-dependent CLP prote 88.6 0.48 1.6E-05 40.1 4.8 19 83-101 50-68 (363)
206 2ius_A DNA translocase FTSK; n 88.6 0.51 1.8E-05 42.1 5.1 28 83-110 166-193 (512)
207 2cvh_A DNA repair and recombin 88.6 0.3 1E-05 37.7 3.3 37 81-123 17-53 (220)
208 2i4i_A ATP-dependent RNA helic 88.5 3.5 0.00012 34.9 10.4 72 114-195 275-350 (417)
209 3trf_A Shikimate kinase, SK; a 88.4 0.17 5.9E-06 38.1 1.7 19 84-102 5-23 (185)
210 1zp6_A Hypothetical protein AT 88.3 0.13 4.5E-06 39.0 1.0 21 81-101 6-26 (191)
211 1ofh_A ATP-dependent HSL prote 88.2 0.77 2.6E-05 37.4 5.7 18 84-101 50-67 (310)
212 3iij_A Coilin-interacting nucl 88.2 0.19 6.5E-06 37.8 1.8 21 82-102 9-29 (180)
213 2ffh_A Protein (FFH); SRP54, s 88.2 4 0.00014 35.4 10.3 36 84-122 98-133 (425)
214 3nbx_X ATPase RAVA; AAA+ ATPas 88.2 0.52 1.8E-05 41.9 4.8 36 66-101 23-58 (500)
215 4akg_A Glutathione S-transfera 88.1 0.96 3.3E-05 48.2 7.4 47 55-102 891-941 (2695)
216 2bjv_A PSP operon transcriptio 88.1 0.33 1.1E-05 39.0 3.3 20 82-101 27-46 (265)
217 2j41_A Guanylate kinase; GMP, 88.1 0.18 6.3E-06 38.6 1.7 21 81-101 3-23 (207)
218 3b5x_A Lipid A export ATP-bind 88.1 0.96 3.3E-05 41.0 6.6 41 188-229 497-537 (582)
219 1lvg_A Guanylate kinase, GMP k 88.1 0.19 6.4E-06 38.7 1.7 19 83-101 3-21 (198)
220 1w36_B RECB, exodeoxyribonucle 88.0 0.98 3.4E-05 44.6 7.1 53 86-138 18-79 (1180)
221 2pt7_A CAG-ALFA; ATPase, prote 88.0 0.19 6.5E-06 42.2 1.8 20 81-100 168-187 (330)
222 3tau_A Guanylate kinase, GMP k 87.9 0.26 9E-06 38.2 2.5 19 83-101 7-25 (208)
223 2qor_A Guanylate kinase; phosp 87.9 0.2 6.7E-06 38.7 1.7 21 81-101 9-29 (204)
224 1bg2_A Kinesin; motor protein, 87.9 0.29 9.9E-06 41.0 2.8 24 78-101 70-95 (325)
225 1f9v_A Kinesin-like protein KA 87.8 0.29 1E-05 41.4 2.9 25 77-101 76-102 (347)
226 3a8t_A Adenylate isopentenyltr 87.8 0.22 7.5E-06 41.9 2.1 19 84-102 40-58 (339)
227 1qhx_A CPT, protein (chloramph 87.8 0.2 6.9E-06 37.5 1.7 18 84-101 3-20 (178)
228 3sqw_A ATP-dependent RNA helic 87.7 6.5 0.00022 35.3 12.0 84 108-198 281-368 (579)
229 4ag6_A VIRB4 ATPase, type IV s 87.7 0.54 1.8E-05 40.2 4.6 42 190-231 263-308 (392)
230 2i1q_A DNA repair and recombin 87.7 0.44 1.5E-05 39.6 3.9 54 85-138 99-166 (322)
231 2qmh_A HPR kinase/phosphorylas 87.7 0.27 9.4E-06 38.2 2.4 19 83-101 33-51 (205)
232 3dc4_A Kinesin-like protein NO 87.6 0.27 9.3E-06 41.5 2.6 23 79-101 88-112 (344)
233 4f4c_A Multidrug resistance pr 87.6 0.39 1.3E-05 48.0 4.0 40 188-227 571-610 (1321)
234 3lw7_A Adenylate kinase relate 87.6 0.2 6.8E-06 37.0 1.6 16 86-101 3-18 (179)
235 3t0q_A AGR253WP; kinesin, alph 87.3 0.34 1.2E-05 41.0 2.9 25 77-101 77-103 (349)
236 3tr0_A Guanylate kinase, GMP k 87.3 0.23 8E-06 38.0 1.8 20 82-101 5-24 (205)
237 1goj_A Kinesin, kinesin heavy 87.2 0.3 1E-05 41.4 2.6 23 79-101 74-98 (355)
238 2h58_A Kinesin-like protein KI 87.1 0.32 1.1E-05 40.9 2.7 25 77-101 72-98 (330)
239 4etp_A Kinesin-like protein KA 87.1 0.31 1.1E-05 42.1 2.6 25 77-101 132-158 (403)
240 2zfi_A Kinesin-like protein KI 87.1 0.31 1.1E-05 41.5 2.7 24 78-101 82-107 (366)
241 2vvg_A Kinesin-2; motor protei 87.1 0.34 1.2E-05 41.0 2.8 23 79-101 83-107 (350)
242 3gbj_A KIF13B protein; kinesin 87.0 0.3 1E-05 41.4 2.5 25 77-101 84-110 (354)
243 1u0j_A DNA replication protein 87.0 0.88 3E-05 36.9 5.1 45 56-102 73-122 (267)
244 2y65_A Kinesin, kinesin heavy 87.0 0.35 1.2E-05 41.2 2.8 23 79-101 78-102 (365)
245 1v8k_A Kinesin-like protein KI 87.0 0.32 1.1E-05 42.1 2.6 23 79-101 148-172 (410)
246 1j8m_F SRP54, signal recogniti 86.9 5.7 0.00019 32.6 10.2 36 84-122 98-133 (297)
247 2z43_A DNA repair and recombin 86.9 0.53 1.8E-05 39.2 4.0 55 84-138 107-165 (324)
248 3lre_A Kinesin-like protein KI 86.9 0.34 1.2E-05 41.1 2.8 23 79-101 99-123 (355)
249 1kag_A SKI, shikimate kinase I 86.9 0.27 9.1E-06 36.6 1.9 18 84-101 4-21 (173)
250 1t5c_A CENP-E protein, centrom 86.9 0.31 1.1E-05 41.3 2.5 24 78-101 70-95 (349)
251 4a14_A Kinesin, kinesin-like p 86.9 0.35 1.2E-05 40.8 2.8 23 79-101 77-101 (344)
252 3b6u_A Kinesin-like protein KI 86.8 0.33 1.1E-05 41.4 2.6 23 79-101 95-119 (372)
253 1y63_A LMAJ004144AAA protein; 86.8 0.25 8.4E-06 37.5 1.7 19 83-101 9-27 (184)
254 1x88_A Kinesin-like protein KI 86.7 0.3 1E-05 41.5 2.3 24 78-101 81-106 (359)
255 2nr8_A Kinesin-like protein KI 86.7 0.32 1.1E-05 41.3 2.5 25 77-101 95-121 (358)
256 2r44_A Uncharacterized protein 86.6 0.21 7.1E-06 41.6 1.2 27 75-101 37-63 (331)
257 3fht_A ATP-dependent RNA helic 86.6 4.3 0.00015 34.2 9.7 74 114-197 265-342 (412)
258 4gp7_A Metallophosphoesterase; 86.5 0.2 6.8E-06 37.6 1.0 21 82-102 7-27 (171)
259 2wbe_C Bipolar kinesin KRP-130 86.4 0.33 1.1E-05 41.5 2.4 23 79-101 94-118 (373)
260 3bfn_A Kinesin-like protein KI 86.3 0.31 1.1E-05 41.8 2.2 21 81-101 94-116 (388)
261 1z6g_A Guanylate kinase; struc 86.3 0.3 1E-05 38.2 1.9 21 81-101 20-40 (218)
262 2owm_A Nckin3-434, related to 86.2 0.37 1.3E-05 42.2 2.7 23 79-101 130-154 (443)
263 3cob_A Kinesin heavy chain-lik 86.1 0.3 1E-05 41.7 2.0 25 77-101 71-97 (369)
264 2yhs_A FTSY, cell division pro 86.0 1.2 4.2E-05 39.5 5.9 35 84-121 293-327 (503)
265 3u06_A Protein claret segregat 85.9 0.37 1.3E-05 41.8 2.5 25 77-101 130-156 (412)
266 2rep_A Kinesin-like protein KI 85.9 0.37 1.3E-05 41.2 2.5 25 77-101 107-133 (376)
267 2heh_A KIF2C protein; kinesin, 85.9 0.4 1.4E-05 41.2 2.7 24 79-102 128-153 (387)
268 2iut_A DNA translocase FTSK; n 85.9 0.91 3.1E-05 41.0 5.1 40 85-124 215-255 (574)
269 2r2a_A Uncharacterized protein 85.9 0.51 1.7E-05 36.5 3.1 21 87-107 8-28 (199)
270 2ze6_A Isopentenyl transferase 85.8 0.27 9.1E-06 39.5 1.5 17 86-102 3-19 (253)
271 2x8a_A Nuclear valosin-contain 85.8 0.16 5.5E-06 41.4 0.1 52 47-101 7-61 (274)
272 1kht_A Adenylate kinase; phosp 85.7 0.31 1E-05 36.7 1.7 18 84-101 3-20 (192)
273 3exa_A TRNA delta(2)-isopenten 85.7 0.36 1.2E-05 40.2 2.2 18 85-102 4-21 (322)
274 3a00_A Guanylate kinase, GMP k 85.6 0.33 1.1E-05 36.8 1.9 17 85-101 2-18 (186)
275 4eun_A Thermoresistant glucoki 85.5 0.33 1.1E-05 37.3 1.8 19 83-101 28-46 (200)
276 3foz_A TRNA delta(2)-isopenten 85.5 0.38 1.3E-05 40.1 2.2 17 86-102 12-28 (316)
277 3kb2_A SPBC2 prophage-derived 85.4 0.3 1E-05 36.1 1.5 16 86-101 3-18 (173)
278 1ly1_A Polynucleotide kinase; 85.4 0.3 1E-05 36.4 1.5 16 86-101 4-19 (181)
279 1knq_A Gluconate kinase; ALFA/ 85.3 0.29 9.9E-06 36.5 1.4 19 83-101 7-25 (175)
280 4b4t_L 26S protease subunit RP 85.3 0.32 1.1E-05 42.5 1.8 54 45-101 176-232 (437)
281 3lnc_A Guanylate kinase, GMP k 85.2 0.28 9.6E-06 38.6 1.3 21 81-101 24-44 (231)
282 3cm0_A Adenylate kinase; ATP-b 85.2 0.24 8.3E-06 37.3 0.9 19 83-101 3-21 (186)
283 1v5w_A DMC1, meiotic recombina 85.2 0.64 2.2E-05 39.1 3.6 42 84-125 122-166 (343)
284 1tue_A Replication protein E1; 85.0 0.99 3.4E-05 35.2 4.3 45 55-101 27-75 (212)
285 3ney_A 55 kDa erythrocyte memb 85.0 0.46 1.6E-05 36.7 2.4 19 83-101 18-36 (197)
286 3b9p_A CG5977-PA, isoform A; A 84.9 0.34 1.2E-05 39.6 1.7 19 83-101 53-71 (297)
287 1m7g_A Adenylylsulfate kinase; 84.9 0.53 1.8E-05 36.4 2.8 31 70-101 12-42 (211)
288 1znw_A Guanylate kinase, GMP k 84.7 0.36 1.2E-05 37.3 1.8 22 80-101 16-37 (207)
289 3vkg_A Dynein heavy chain, cyt 84.4 2.1 7.2E-05 46.4 7.6 47 55-102 874-924 (3245)
290 1ojl_A Transcriptional regulat 84.4 0.56 1.9E-05 38.7 2.8 20 82-101 23-42 (304)
291 2zr9_A Protein RECA, recombina 84.3 0.79 2.7E-05 38.7 3.8 39 83-124 60-98 (349)
292 2v1x_A ATP-dependent DNA helic 84.3 14 0.00047 33.5 12.2 82 104-195 256-341 (591)
293 1s2m_A Putative ATP-dependent 84.1 7.5 0.00026 32.6 10.0 74 114-197 257-334 (400)
294 1s96_A Guanylate kinase, GMP k 84.0 0.41 1.4E-05 37.6 1.8 21 81-101 13-33 (219)
295 1lv7_A FTSH; alpha/beta domain 83.8 0.39 1.3E-05 38.4 1.6 18 84-101 45-62 (257)
296 3cmw_A Protein RECA, recombina 83.7 0.93 3.2E-05 46.2 4.5 89 84-202 1431-1522(1706)
297 1yks_A Genome polyprotein [con 83.7 3 0.0001 36.3 7.3 68 115-194 177-245 (440)
298 2v54_A DTMP kinase, thymidylat 83.5 0.44 1.5E-05 36.3 1.8 19 83-101 3-21 (204)
299 2rhm_A Putative kinase; P-loop 83.3 0.37 1.3E-05 36.4 1.2 18 84-101 5-22 (193)
300 2j37_W Signal recognition part 83.3 5 0.00017 35.6 8.7 35 86-123 103-137 (504)
301 1sky_E F1-ATPase, F1-ATP synth 83.3 8.9 0.00031 33.7 10.1 25 78-102 145-169 (473)
302 3uk6_A RUVB-like 2; hexameric 83.2 0.5 1.7E-05 39.8 2.1 19 84-102 70-88 (368)
303 1u94_A RECA protein, recombina 83.2 1 3.4E-05 38.2 4.0 39 83-124 62-100 (356)
304 3crm_A TRNA delta(2)-isopenten 83.2 0.54 1.8E-05 39.3 2.2 17 86-102 7-23 (323)
305 1ex7_A Guanylate kinase; subst 83.1 0.47 1.6E-05 36.3 1.7 17 85-101 2-18 (186)
306 1xti_A Probable ATP-dependent 83.1 7.9 0.00027 32.3 9.7 76 114-199 249-328 (391)
307 3uie_A Adenylyl-sulfate kinase 83.1 0.41 1.4E-05 36.7 1.4 31 70-101 12-42 (200)
308 2qt1_A Nicotinamide riboside k 83.0 0.3 1E-05 37.7 0.6 24 78-101 15-38 (207)
309 2c95_A Adenylate kinase 1; tra 83.0 0.45 1.5E-05 36.0 1.6 19 83-101 8-26 (196)
310 2j0s_A ATP-dependent RNA helic 82.9 9.2 0.00032 32.2 10.1 74 114-197 275-352 (410)
311 1aky_A Adenylate kinase; ATP:A 82.6 0.5 1.7E-05 36.7 1.8 19 83-101 3-21 (220)
312 3t61_A Gluconokinase; PSI-biol 82.5 0.47 1.6E-05 36.3 1.5 17 85-101 19-35 (202)
313 3c8u_A Fructokinase; YP_612366 82.3 0.51 1.8E-05 36.4 1.7 19 83-101 21-39 (208)
314 3d3q_A TRNA delta(2)-isopenten 82.3 0.6 2E-05 39.3 2.2 17 86-102 9-25 (340)
315 1wp9_A ATP-dependent RNA helic 82.2 8 0.00027 33.0 9.6 77 113-199 359-447 (494)
316 1zuh_A Shikimate kinase; alpha 82.2 0.5 1.7E-05 34.9 1.5 18 85-102 8-25 (168)
317 2d7d_A Uvrabc system protein B 82.1 6.5 0.00022 36.1 9.3 77 114-200 444-524 (661)
318 1nij_A Hypothetical protein YJ 82.1 1.1 3.8E-05 37.2 3.8 16 86-101 6-21 (318)
319 1zak_A Adenylate kinase; ATP:A 81.9 0.51 1.8E-05 36.7 1.6 19 84-102 5-23 (222)
320 2bdt_A BH3686; alpha-beta prot 81.9 0.38 1.3E-05 36.4 0.8 17 85-101 3-19 (189)
321 2db3_A ATP-dependent RNA helic 81.9 12 0.00041 32.2 10.5 70 117-196 302-375 (434)
322 2vli_A Antibiotic resistance p 81.8 0.55 1.9E-05 35.1 1.7 18 84-101 5-22 (183)
323 1gvn_B Zeta; postsegregational 81.7 0.54 1.8E-05 38.5 1.7 17 85-101 34-50 (287)
324 1zd8_A GTP:AMP phosphotransfer 81.7 0.51 1.7E-05 36.9 1.5 18 84-101 7-24 (227)
325 1oyw_A RECQ helicase, ATP-depe 81.7 10 0.00034 33.7 10.1 73 114-196 235-311 (523)
326 2pez_A Bifunctional 3'-phospho 81.7 0.5 1.7E-05 35.4 1.4 19 83-101 4-22 (179)
327 1tev_A UMP-CMP kinase; ploop, 81.7 0.52 1.8E-05 35.5 1.5 18 84-101 3-20 (196)
328 1xwi_A SKD1 protein; VPS4B, AA 81.6 0.71 2.4E-05 38.4 2.4 52 47-101 9-62 (322)
329 1via_A Shikimate kinase; struc 81.5 0.59 2E-05 34.8 1.8 16 86-101 6-21 (175)
330 1um8_A ATP-dependent CLP prote 81.3 0.61 2.1E-05 39.6 1.9 18 84-101 72-89 (376)
331 2bwj_A Adenylate kinase 5; pho 81.3 0.53 1.8E-05 35.7 1.4 19 83-101 11-29 (199)
332 3nwj_A ATSK2; P loop, shikimat 81.1 0.68 2.3E-05 37.2 2.0 19 83-101 47-65 (250)
333 3t15_A Ribulose bisphosphate c 81.1 0.52 1.8E-05 38.7 1.4 17 85-101 37-53 (293)
334 2iyv_A Shikimate kinase, SK; t 81.1 0.65 2.2E-05 34.8 1.9 17 85-101 3-19 (184)
335 3fb4_A Adenylate kinase; psych 81.1 0.55 1.9E-05 36.3 1.5 16 86-101 2-17 (216)
336 1rj9_A FTSY, signal recognitio 81.1 1.5 5.1E-05 36.3 4.2 36 84-122 102-137 (304)
337 1e6c_A Shikimate kinase; phosp 81.0 0.63 2.1E-05 34.4 1.7 17 85-101 3-19 (173)
338 1nks_A Adenylate kinase; therm 81.0 0.54 1.9E-05 35.3 1.4 16 86-101 3-18 (194)
339 2plr_A DTMP kinase, probable t 80.8 0.55 1.9E-05 36.0 1.4 18 84-101 4-21 (213)
340 3hr8_A Protein RECA; alpha and 80.7 1.2 4.1E-05 37.8 3.5 40 83-125 60-99 (356)
341 2wwf_A Thymidilate kinase, put 80.7 0.59 2E-05 35.9 1.5 19 83-101 9-27 (212)
342 2yvu_A Probable adenylyl-sulfa 80.4 0.59 2E-05 35.2 1.4 20 83-102 12-31 (186)
343 3asz_A Uridine kinase; cytidin 80.3 0.55 1.9E-05 36.1 1.2 19 83-101 5-23 (211)
344 2cdn_A Adenylate kinase; phosp 80.3 0.68 2.3E-05 35.3 1.8 17 85-101 21-37 (201)
345 3b9q_A Chloroplast SRP recepto 80.2 1.3 4.4E-05 36.6 3.5 19 83-101 99-117 (302)
346 1g8p_A Magnesium-chelatase 38 80.1 0.57 2E-05 39.0 1.4 18 84-101 45-62 (350)
347 3tif_A Uncharacterized ABC tra 80.1 0.6 2.1E-05 37.0 1.4 38 189-226 163-202 (235)
348 3dl0_A Adenylate kinase; phosp 80.0 0.63 2.2E-05 36.0 1.5 16 86-101 2-17 (216)
349 1ixz_A ATP-dependent metallopr 80.0 0.64 2.2E-05 37.0 1.6 17 85-101 50-66 (254)
350 1f2t_A RAD50 ABC-ATPase; DNA d 80.0 0.66 2.3E-05 33.9 1.5 16 86-101 25-40 (149)
351 1nn5_A Similar to deoxythymidy 79.9 0.66 2.3E-05 35.6 1.6 19 83-101 8-26 (215)
352 3eph_A TRNA isopentenyltransfe 79.9 0.75 2.6E-05 39.7 2.0 17 86-102 4-20 (409)
353 1ry6_A Internal kinesin; kines 79.8 0.94 3.2E-05 38.5 2.6 19 83-101 82-102 (360)
354 2qp9_X Vacuolar protein sortin 79.8 0.93 3.2E-05 38.3 2.6 18 84-101 84-101 (355)
355 1qf9_A UMP/CMP kinase, protein 79.8 0.61 2.1E-05 35.0 1.3 17 85-101 7-23 (194)
356 2jaq_A Deoxyguanosine kinase; 79.6 0.68 2.3E-05 35.2 1.6 16 86-101 2-17 (205)
357 4fcw_A Chaperone protein CLPB; 79.6 0.63 2.1E-05 38.1 1.4 17 85-101 48-64 (311)
358 1pzn_A RAD51, DNA repair and r 79.5 1.1 3.8E-05 37.8 2.9 39 85-123 132-173 (349)
359 4b4t_I 26S protease regulatory 79.5 0.46 1.6E-05 41.4 0.5 54 45-101 177-233 (437)
360 4a74_A DNA repair and recombin 79.4 0.66 2.3E-05 36.0 1.4 23 81-103 22-44 (231)
361 2vhj_A Ntpase P4, P4; non- hyd 79.2 0.49 1.7E-05 39.6 0.6 24 83-106 122-145 (331)
362 1ukz_A Uridylate kinase; trans 79.2 0.7 2.4E-05 35.3 1.5 17 85-101 16-32 (203)
363 2c9o_A RUVB-like 1; hexameric 79.1 0.89 3.1E-05 39.8 2.3 20 83-102 62-81 (456)
364 1ak2_A Adenylate kinase isoenz 79.1 0.78 2.7E-05 36.1 1.8 19 83-101 15-33 (233)
365 2pbr_A DTMP kinase, thymidylat 79.1 0.73 2.5E-05 34.7 1.5 15 87-101 3-17 (195)
366 1cke_A CK, MSSA, protein (cyti 78.9 0.71 2.4E-05 35.8 1.5 17 85-101 6-22 (227)
367 1vma_A Cell division protein F 78.9 1.7 5.8E-05 36.0 3.8 18 85-102 105-122 (306)
368 2v9p_A Replication protein E1; 78.9 0.97 3.3E-05 37.5 2.3 21 81-101 123-143 (305)
369 2pt5_A Shikimate kinase, SK; a 78.9 0.76 2.6E-05 33.8 1.6 16 86-101 2-17 (168)
370 2v6i_A RNA helicase; membrane, 78.9 4 0.00014 35.3 6.4 67 115-193 171-238 (431)
371 2r62_A Cell division protease 78.8 0.4 1.4E-05 38.5 0.0 18 84-101 44-61 (268)
372 2z0h_A DTMP kinase, thymidylat 78.7 0.74 2.5E-05 34.8 1.5 15 87-101 3-17 (197)
373 2r8r_A Sensor protein; KDPD, P 78.6 1.9 6.6E-05 34.0 3.9 25 86-110 8-32 (228)
374 3tlx_A Adenylate kinase 2; str 78.6 0.83 2.8E-05 36.3 1.8 19 83-101 28-46 (243)
375 1jjv_A Dephospho-COA kinase; P 78.4 0.78 2.7E-05 35.1 1.5 16 86-101 4-19 (206)
376 2cbz_A Multidrug resistance-as 78.3 0.74 2.5E-05 36.6 1.4 39 190-228 146-187 (237)
377 3d8b_A Fidgetin-like protein 1 78.1 1 3.6E-05 37.9 2.4 18 84-101 117-134 (357)
378 1in4_A RUVB, holliday junction 78.0 1.1 3.7E-05 37.5 2.4 17 85-101 52-68 (334)
379 3umf_A Adenylate kinase; rossm 78.0 0.98 3.3E-05 35.4 2.0 22 81-102 26-47 (217)
380 3be4_A Adenylate kinase; malar 77.9 0.82 2.8E-05 35.5 1.6 18 84-101 5-22 (217)
381 1ye8_A Protein THEP1, hypothet 77.9 0.83 2.8E-05 34.5 1.5 16 86-101 2-17 (178)
382 3tbk_A RIG-I helicase domain; 77.8 6.7 0.00023 34.5 7.7 96 95-197 370-478 (555)
383 3kta_A Chromosome segregation 77.8 0.77 2.6E-05 34.3 1.3 16 86-101 28-43 (182)
384 3a4m_A L-seryl-tRNA(SEC) kinas 77.6 0.81 2.8E-05 36.7 1.5 17 85-101 5-21 (260)
385 1sgw_A Putative ABC transporte 77.5 0.85 2.9E-05 35.6 1.5 41 188-228 150-190 (214)
386 2p5t_B PEZT; postsegregational 77.5 0.69 2.4E-05 37.0 1.0 18 84-101 32-49 (253)
387 2xxa_A Signal recognition part 77.4 9.6 0.00033 33.1 8.3 35 86-122 102-136 (433)
388 3qf7_A RAD50; ABC-ATPase, ATPa 77.4 0.82 2.8E-05 38.8 1.5 40 188-227 302-341 (365)
389 2if2_A Dephospho-COA kinase; a 77.3 0.8 2.7E-05 35.0 1.3 16 86-101 3-18 (204)
390 1xjc_A MOBB protein homolog; s 77.2 2.2 7.4E-05 32.0 3.6 25 86-111 6-30 (169)
391 1e4v_A Adenylate kinase; trans 77.0 0.82 2.8E-05 35.3 1.3 16 86-101 2-17 (214)
392 3gfo_A Cobalt import ATP-bindi 76.8 0.84 2.9E-05 37.2 1.4 30 189-218 161-190 (275)
393 2xb4_A Adenylate kinase; ATP-b 76.8 0.92 3.1E-05 35.4 1.6 16 86-101 2-17 (223)
394 2pze_A Cystic fibrosis transme 76.7 0.86 2.9E-05 35.9 1.3 21 81-101 31-51 (229)
395 2og2_A Putative signal recogni 76.6 1.8 6.3E-05 36.6 3.5 18 84-101 157-174 (359)
396 3pxg_A Negative regulator of g 76.5 1.4 4.7E-05 38.8 2.8 19 84-102 201-219 (468)
397 2bbw_A Adenylate kinase 4, AK4 76.4 0.99 3.4E-05 35.7 1.7 18 84-101 27-44 (246)
398 1zu4_A FTSY; GTPase, signal re 76.3 2.2 7.5E-05 35.5 3.8 36 84-122 105-140 (320)
399 2ff7_A Alpha-hemolysin translo 76.3 0.88 3E-05 36.4 1.3 40 189-229 163-202 (247)
400 2pcj_A ABC transporter, lipopr 76.2 0.85 2.9E-05 35.8 1.2 40 188-227 157-196 (224)
401 2ghi_A Transport protein; mult 76.2 0.91 3.1E-05 36.6 1.4 39 190-229 174-212 (260)
402 2i3b_A HCR-ntpase, human cance 76.2 1.5 5.1E-05 33.5 2.6 64 187-253 103-171 (189)
403 4h1g_A Maltose binding protein 76.0 1.3 4.4E-05 41.3 2.5 25 77-101 454-480 (715)
404 3ice_A Transcription terminati 75.9 2.9 9.7E-05 36.0 4.4 32 71-102 158-192 (422)
405 1htw_A HI0065; nucleotide-bind 75.8 0.89 3E-05 33.7 1.2 20 82-101 31-50 (158)
406 3sr0_A Adenylate kinase; phosp 75.8 1.3 4.5E-05 34.3 2.2 16 87-102 3-18 (206)
407 2wv9_A Flavivirin protease NS2 75.8 6.9 0.00024 36.1 7.3 68 115-194 410-478 (673)
408 4e22_A Cytidylate kinase; P-lo 75.7 1.4 4.8E-05 35.2 2.4 19 83-101 26-44 (252)
409 3auy_A DNA double-strand break 75.7 0.91 3.1E-05 38.6 1.3 15 87-101 28-42 (371)
410 1g6h_A High-affinity branched- 75.7 0.94 3.2E-05 36.4 1.3 40 189-228 171-210 (257)
411 4g1u_C Hemin import ATP-bindin 75.6 0.96 3.3E-05 36.6 1.4 31 189-219 165-195 (266)
412 1mv5_A LMRA, multidrug resista 75.5 0.85 2.9E-05 36.3 1.0 37 190-227 158-194 (243)
413 1c4o_A DNA nucleotide excision 75.4 27 0.00091 32.1 11.1 76 115-200 439-518 (664)
414 1iy2_A ATP-dependent metallopr 75.4 1 3.5E-05 36.4 1.5 52 47-101 37-90 (278)
415 1b0u_A Histidine permease; ABC 75.3 0.99 3.4E-05 36.4 1.4 31 189-219 171-201 (262)
416 1ji0_A ABC transporter; ATP bi 75.2 0.99 3.4E-05 35.9 1.3 40 188-227 156-196 (240)
417 1uf9_A TT1252 protein; P-loop, 75.1 1 3.5E-05 34.2 1.4 16 86-101 10-25 (203)
418 3f9v_A Minichromosome maintena 74.8 1.5 5.1E-05 39.9 2.6 16 86-101 329-344 (595)
419 1vht_A Dephospho-COA kinase; s 74.7 1.1 3.9E-05 34.6 1.6 17 85-101 5-21 (218)
420 3k1j_A LON protease, ATP-depen 74.5 2.1 7.2E-05 38.9 3.5 23 79-101 55-77 (604)
421 2zan_A Vacuolar protein sortin 74.4 1.4 4.8E-05 38.5 2.2 18 84-101 167-184 (444)
422 2zu0_C Probable ATP-dependent 74.2 1.1 3.8E-05 36.3 1.4 37 191-227 184-220 (267)
423 1vpl_A ABC transporter, ATP-bi 74.2 1.1 3.8E-05 36.0 1.4 41 188-228 163-203 (256)
424 2d2e_A SUFC protein; ABC-ATPas 74.0 1.1 3.8E-05 35.8 1.3 39 190-228 162-200 (250)
425 2ixe_A Antigen peptide transpo 74.0 1.1 3.8E-05 36.3 1.4 40 188-227 173-213 (271)
426 1tf7_A KAIC; homohexamer, hexa 74.0 2.5 8.6E-05 37.7 3.8 40 81-122 36-75 (525)
427 2yz2_A Putative ABC transporte 73.9 1.1 3.9E-05 36.1 1.4 40 189-228 156-195 (266)
428 2grj_A Dephospho-COA kinase; T 73.8 1.2 4.1E-05 34.1 1.5 16 86-101 14-29 (192)
429 2qi9_C Vitamin B12 import ATP- 73.8 1.1 3.8E-05 35.8 1.3 36 192-227 154-189 (249)
430 2olj_A Amino acid ABC transpor 73.7 1.2 4E-05 36.1 1.4 40 188-227 176-215 (263)
431 2nq2_C Hypothetical ABC transp 73.6 1.1 3.9E-05 35.9 1.3 31 189-219 146-176 (253)
432 2jeo_A Uridine-cytidine kinase 73.5 1.1 3.7E-05 35.5 1.2 20 82-101 23-42 (245)
433 2v3c_C SRP54, signal recogniti 73.3 3.7 0.00013 35.7 4.6 35 85-122 100-134 (432)
434 2yjt_D ATP-dependent RNA helic 75.5 0.7 2.4E-05 34.4 0.0 74 114-197 29-106 (170)
435 1g41_A Heat shock protein HSLU 73.1 1.4 4.9E-05 38.4 1.9 18 84-101 50-67 (444)
436 3tqc_A Pantothenate kinase; bi 73.0 5.3 0.00018 33.2 5.3 16 86-101 94-109 (321)
437 1np6_A Molybdopterin-guanine d 73.0 4.1 0.00014 30.5 4.3 24 86-110 8-31 (174)
438 2ihy_A ABC transporter, ATP-bi 73.0 1.2 4.1E-05 36.3 1.3 29 189-217 179-207 (279)
439 2vp4_A Deoxynucleoside kinase; 72.9 1.3 4.3E-05 34.8 1.4 19 83-101 19-37 (230)
440 1hv8_A Putative ATP-dependent 72.8 21 0.00071 29.2 9.2 75 114-198 237-315 (367)
441 2eyq_A TRCF, transcription-rep 72.7 6.6 0.00023 38.6 6.7 79 114-200 811-893 (1151)
442 4gl2_A Interferon-induced heli 72.5 3.6 0.00012 37.8 4.6 74 115-194 400-487 (699)
443 3qks_A DNA double-strand break 72.5 1.4 4.6E-05 34.0 1.5 16 86-101 25-40 (203)
444 2jlq_A Serine protease subunit 72.5 9.9 0.00034 33.0 7.2 67 116-194 189-256 (451)
445 3cf2_A TER ATPase, transitiona 72.3 2.3 7.7E-05 40.2 3.2 54 47-101 474-528 (806)
446 2xau_A PRE-mRNA-splicing facto 72.0 13 0.00046 34.8 8.4 76 114-195 302-393 (773)
447 1rz3_A Hypothetical protein rb 71.9 1.2 4.2E-05 34.0 1.1 18 84-101 22-39 (201)
448 1q57_A DNA primase/helicase; d 71.8 1.9 6.5E-05 38.2 2.5 52 81-135 239-290 (503)
449 1c9k_A COBU, adenosylcobinamid 71.8 2.1 7.1E-05 32.5 2.3 33 87-126 2-34 (180)
450 4eaq_A DTMP kinase, thymidylat 71.6 1.4 4.8E-05 34.6 1.4 19 83-101 25-43 (229)
451 3nh6_A ATP-binding cassette SU 71.4 0.97 3.3E-05 37.5 0.4 37 190-227 209-245 (306)
452 4akg_A Glutathione S-transfera 71.3 1.4 4.9E-05 47.0 1.7 21 81-101 1264-1284(2695)
453 1ltq_A Polynucleotide kinase; 71.3 1.5 5E-05 35.8 1.5 16 86-101 4-19 (301)
454 3pxi_A Negative regulator of g 71.1 2.1 7.3E-05 40.0 2.8 19 84-102 201-219 (758)
455 2bbs_A Cystic fibrosis transme 70.8 1.4 4.7E-05 36.2 1.2 21 81-101 61-81 (290)
456 1gtv_A TMK, thymidylate kinase 70.3 0.76 2.6E-05 35.3 -0.4 15 87-101 3-17 (214)
457 4dzz_A Plasmid partitioning pr 69.8 8.1 0.00028 29.0 5.5 32 88-122 6-37 (206)
458 3aez_A Pantothenate kinase; tr 69.7 1.6 5.5E-05 36.2 1.4 20 82-101 88-107 (312)
459 1uj2_A Uridine-cytidine kinase 69.6 1.7 5.8E-05 34.6 1.5 16 86-101 24-39 (252)
460 3qkt_A DNA double-strand break 69.4 1.7 5.7E-05 36.4 1.5 40 188-227 271-311 (339)
461 2f6r_A COA synthase, bifunctio 69.4 1.6 5.6E-05 35.5 1.4 17 86-102 77-93 (281)
462 3eiq_A Eukaryotic initiation f 69.0 7.6 0.00026 32.7 5.7 79 109-197 274-356 (414)
463 1q3t_A Cytidylate kinase; nucl 69.0 2 6.8E-05 33.7 1.8 19 83-101 15-33 (236)
464 1odf_A YGR205W, hypothetical 3 68.9 1.8 6E-05 35.5 1.5 16 86-101 33-48 (290)
465 1tf7_A KAIC; homohexamer, hexa 68.7 3.9 0.00014 36.4 3.9 41 81-124 278-318 (525)
466 2ykg_A Probable ATP-dependent 68.6 9.5 0.00032 34.9 6.6 79 114-198 397-488 (696)
467 3ake_A Cytidylate kinase; CMP 68.6 1.9 6.3E-05 32.8 1.5 16 86-101 4-19 (208)
468 4a2p_A RIG-I, retinoic acid in 68.0 9.2 0.00032 33.7 6.2 97 95-198 371-480 (556)
469 2r2a_A Uncharacterized protein 68.0 2.8 9.5E-05 32.3 2.4 49 190-239 88-141 (199)
470 3tqf_A HPR(Ser) kinase; transf 67.9 2.3 8E-05 32.1 1.8 20 83-102 15-34 (181)
471 3bs4_A Uncharacterized protein 67.8 4.1 0.00014 32.8 3.4 53 83-139 20-72 (260)
472 2pjz_A Hypothetical protein ST 67.7 1.8 6.2E-05 34.9 1.3 38 189-229 146-183 (263)
473 3cmu_A Protein RECA, recombina 67.6 3.8 0.00013 42.6 3.8 40 81-123 1078-1117(2050)
474 2whx_A Serine protease/ntpase/ 67.2 24 0.00081 32.1 8.7 68 115-194 355-423 (618)
475 1svm_A Large T antigen; AAA+ f 67.1 2.7 9.2E-05 35.9 2.3 20 82-101 167-186 (377)
476 3v9p_A DTMP kinase, thymidylat 67.0 2.3 7.8E-05 33.5 1.7 21 82-102 23-43 (227)
477 1a7j_A Phosphoribulokinase; tr 66.9 2.1 7.1E-05 35.0 1.5 16 86-101 7-22 (290)
478 2qen_A Walker-type ATPase; unk 66.8 3.7 0.00013 33.8 3.1 19 83-101 30-48 (350)
479 1e69_A Chromosome segregation 66.7 2.4 8.4E-05 35.1 2.0 15 87-101 27-41 (322)
480 1p5z_B DCK, deoxycytidine kina 66.1 2.1 7.1E-05 34.2 1.4 19 83-101 23-41 (263)
481 3tmk_A Thymidylate kinase; pho 66.1 2.3 7.9E-05 33.2 1.6 19 83-101 4-22 (216)
482 3cmw_A Protein RECA, recombina 65.9 4.4 0.00015 41.5 3.8 40 82-124 32-71 (1706)
483 2f1r_A Molybdopterin-guanine d 65.8 1.2 4.2E-05 33.4 -0.1 16 86-101 4-19 (171)
484 3r20_A Cytidylate kinase; stru 65.8 2.3 7.8E-05 33.7 1.5 18 85-102 10-27 (233)
485 4anj_A Unconventional myosin-V 65.8 5.3 0.00018 38.8 4.3 59 47-105 98-165 (1052)
486 3h1t_A Type I site-specific re 65.5 47 0.0016 29.6 10.4 81 113-199 437-527 (590)
487 3fvq_A Fe(3+) IONS import ATP- 65.4 2 7E-05 36.4 1.2 20 81-100 27-46 (359)
488 4edh_A DTMP kinase, thymidylat 65.4 2.2 7.6E-05 33.1 1.4 19 83-101 5-23 (213)
489 2ocp_A DGK, deoxyguanosine kin 65.2 2.1 7.2E-05 33.7 1.2 18 84-101 2-19 (241)
490 1sq5_A Pantothenate kinase; P- 65.2 2.1 7.1E-05 35.3 1.2 19 83-101 79-97 (308)
491 1z47_A CYSA, putative ABC-tran 65.1 2.2 7.5E-05 36.1 1.3 21 81-101 38-58 (355)
492 4tmk_A Protein (thymidylate ki 65.0 2.5 8.7E-05 32.9 1.6 19 83-101 2-20 (213)
493 3qf4_B Uncharacterized ABC tra 64.9 2.5 8.7E-05 38.3 1.8 40 189-229 509-548 (598)
494 4a82_A Cystic fibrosis transme 64.7 2.2 7.6E-05 38.5 1.4 39 190-229 496-534 (578)
495 2yyz_A Sugar ABC transporter, 64.4 2.3 8E-05 36.0 1.4 21 81-101 26-46 (359)
496 1pui_A ENGB, probable GTP-bind 64.4 2 6.8E-05 32.6 0.9 19 82-100 24-42 (210)
497 3kta_B Chromosome segregation 64.3 4.3 0.00015 30.4 2.7 38 190-227 87-124 (173)
498 1vt4_I APAF-1 related killer D 64.2 31 0.0011 33.9 9.1 32 145-176 245-276 (1221)
499 2dhr_A FTSH; AAA+ protein, hex 64.1 2.5 8.4E-05 37.6 1.5 17 85-101 65-81 (499)
500 2fna_A Conserved hypothetical 64.1 5.2 0.00018 32.9 3.5 17 85-101 31-47 (357)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.6e-42 Score=285.24 Aligned_cols=215 Identities=32% Similarity=0.504 Sum_probs=197.2
Q ss_pred cccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-----ccc
Q psy4698 41 NWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-----IKE 115 (258)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-----~~~ 115 (258)
+.+.....|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++.+|||||||++|++|++..+... ..+
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~ 102 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 102 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCC
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCC
Confidence 344556789999999999999999999999999999999999999999999999999999999999988643 346
Q ss_pred ceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy4698 116 CQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVL 195 (258)
Q Consensus 116 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVv 195 (258)
++++|++|+++|+.|+.+.++.++...++.+...+|+.........+..+++|+|+||+++.+++.++...++++++||+
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 68999999999999999999999888888999999998888888888888999999999999999988888999999999
Q ss_pred ccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 196 DEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 196 DE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
||||++.+.++...+..+++.+++++|++++|||+|++++++++.++++|+.|.+.++++
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~el 242 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALEL 242 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC---
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999988764
No 2
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=7.7e-42 Score=277.61 Aligned_cols=219 Identities=65% Similarity=1.000 Sum_probs=186.2
Q ss_pred cccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceE
Q psy4698 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQA 118 (258)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~ 118 (258)
+.++++....|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++++++.+.....+.++
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~ 85 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 85 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence 34555666789999999999999999999999999999999999999999999999999999999999998777667799
Q ss_pred EEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccc
Q psy4698 119 LILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEA 198 (258)
Q Consensus 119 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 198 (258)
+|++|+++|+.|+++.++.++...+..+..+.|+.........+.. ++|+|+||+++.+.+.++...++++++||+|||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 9999999999999999999988888888888888766555544444 899999999999999988888999999999999
Q ss_pred hhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcccCC
Q psy4698 199 DEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELTLE 258 (258)
Q Consensus 199 h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (258)
|++.+.++...+..++..+++++|++++|||+++++.++++.|+++|+.|.+.+++.+++
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~ 224 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE 224 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---------
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999888764
No 3
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=4.9e-42 Score=281.41 Aligned_cols=219 Identities=74% Similarity=1.180 Sum_probs=182.6
Q ss_pred cCcccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc
Q psy4698 35 DGLIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK 114 (258)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~ 114 (258)
++...++++....+|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|+++++..+.....
T Consensus 18 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~ 97 (237)
T 3bor_A 18 GGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFK 97 (237)
T ss_dssp ---------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSC
T ss_pred CCcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC
Confidence 34455666677788999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
+.+++|++|+++|+.|+++.++.++...+..+....++.........+..+ ++|+|+||+++.+++.++.+.+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 679999999999999999999999888888888888887766665566555 8999999999999999888889999999
Q ss_pred EEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 194 VLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 194 VvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
|+||||++.+.++...+..+++.+++.+|++++|||+|++++++++.|+++|+.|.+.++
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~e 237 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999988653
No 4
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=9.8e-41 Score=275.66 Aligned_cols=208 Identities=30% Similarity=0.515 Sum_probs=192.7
Q ss_pred ccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 44 HVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
....+|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|+++++..+.....+.+++|++|
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 44568999999999999999999999999999999999999999999999999999999999999887766778999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccchhhh
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~~~ 202 (258)
+++|+.|+++.+++++...++.+..+.|+.........+..+++|+|+||+++.+++.+ ..+.+.++++||+||||++.
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999999988888888888888877777777778899999999999998876 55678899999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 203 SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
+.++...+..+++.++++.|++++|||++++++++++.++++|+.|.+.
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999875
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.2e-40 Score=265.60 Aligned_cols=202 Identities=38% Similarity=0.676 Sum_probs=188.0
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
.+|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++|++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998877666779999999999
Q ss_pred HHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 127 LAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
|+.|+.+.++++.... +..+....|+.........+..+++|+|+||+++.+.+.++...+++++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999988766 778888888888777777777889999999999999999888888999999999999999989
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEE
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKI 248 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v 248 (258)
+...+..++..+++++|++++|||+|.++.++++.|+++|+.|
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999999999887
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.9e-41 Score=272.21 Aligned_cols=208 Identities=29% Similarity=0.491 Sum_probs=183.2
Q ss_pred ccccccCcCC-CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc------cc
Q psy4698 42 WDHVAENFDD-MELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN------IK 114 (258)
Q Consensus 42 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~------~~ 114 (258)
.++...+|++ +++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|++|++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3445567888 7999999999999999999999999999999999999999999999999999999887642 25
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFV 194 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lV 194 (258)
+++++|++|+++|+.|+.+.++++. ..+..+....|+.........+..+++|+|+||+++.+++..+...++++++||
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 5689999999999999999999986 456777888888877777777888899999999999999998888899999999
Q ss_pred EccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 195 LDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 195 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
+||||++.+.++...+..++..+++++|++++|||+|++++++++.++++|++|.|
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999875
No 7
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.4e-40 Score=270.20 Aligned_cols=208 Identities=40% Similarity=0.613 Sum_probs=186.0
Q ss_pred cccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 43 DHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+.....|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++.+|||+|||++|+++++..+.....+.+++|++
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 99 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILA 99 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999999987766677999999
Q ss_pred ccHHHHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 123 PTRELAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 123 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
|+++|+.|+++.++.++... ++.+..+.|+.....+...+ .+++|+|+||+++.+++..+.+.+.++++||+||+|++
T Consensus 100 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 100 PTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 99999999999999987665 78888888887766655544 46899999999999999888888899999999999999
Q ss_pred hccC-cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 202 LSRG-FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 202 ~~~~-~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
.+.+ +...+..+++.+++.+|++++|||+++++.++++.|+++|++|.++
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 9886 9999999999999899999999999999999999999999998764
No 8
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=280.77 Aligned_cols=206 Identities=38% Similarity=0.611 Sum_probs=184.5
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
...+|+++++++.+.+.|.+.||..|+++|.++++.++.| +++++++|||||||++|++|+++.+.....++++||++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 4468999999999999999999999999999999999988 89999999999999999999999998877778999999
Q ss_pred ccHHHHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccchh
Q psy4698 123 PTRELAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEADE 200 (258)
Q Consensus 123 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~ 200 (258)
|+++|+.|+++.++.++... ++.+....++....... ..+++|+|+||++|++++.+ +.+.++++++||+||||+
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 99999999999999998754 56777777665443221 45589999999999999966 567789999999999999
Q ss_pred hhc-cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 201 MLS-RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 201 ~~~-~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
+++ .++...+..+++.+++++|++++|||+++++.++++.++.+|++|.+..|
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~e 300 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECCC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecCC
Confidence 997 68999999999999999999999999999999999999999999998764
No 9
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=8.5e-41 Score=270.78 Aligned_cols=206 Identities=33% Similarity=0.563 Sum_probs=187.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
.+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+.....+.+++|++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999999887666779999999999
Q ss_pred HHHHHHHHHHHhcCCC----CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhh
Q psy4698 127 LAQQIQKVVIALGDFM----SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~ 202 (258)
|+.|+++.++++.... +..+....|+.........+..+++|+|+||+++.+++.++...+++++++|+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 9999999999987765 677777888876655544555678999999999999999888888999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 203 SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
+.++...+..++..+++++|++++|||+|++++++++.++++|+.|.+..
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999998999999999999999999999999999987643
No 10
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.3e-39 Score=261.12 Aligned_cols=202 Identities=35% Similarity=0.570 Sum_probs=184.8
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEecc
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPT 124 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~ 124 (258)
+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999988642 345689999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc
Q psy4698 125 RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR 204 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~ 204 (258)
++|+.|+++.++.+... ..+....|+.........+..+++|+|+||+++.+++.++.+.+.+++++|+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998765 5667777887777776777778999999999999999988888999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
++...+..++..++++.|++++|||++++++++++.|+++|++|.+.
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999999999999999999999999999999875
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=264.91 Aligned_cols=208 Identities=29% Similarity=0.500 Sum_probs=185.7
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc----cccceEEE
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN----IKECQALI 120 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~----~~~~~~li 120 (258)
...+|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++|++..+... ..+.+++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999887642 34568999
Q ss_pred EeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccch
Q psy4698 121 LAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEAD 199 (258)
Q Consensus 121 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h 199 (258)
++|+++|+.|+++.++.++...++.+..+.|+.........+ .+++|+|+||+++.+.+.+. .+.+.++++||+||||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 999999999999999999888888888888887766655554 46899999999999988765 4678899999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
++.+.++...+..++..+++++|++++|||++++++++.+.++.+|++|.+.++
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999988653
No 12
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.3e-40 Score=272.26 Aligned_cols=212 Identities=33% Similarity=0.514 Sum_probs=188.9
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc---------cc
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI---------KE 115 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~---------~~ 115 (258)
...+|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++|++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 346799999999999999999999999999999999999999999999999999999999999886432 34
Q ss_pred ceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEE
Q psy4698 116 CQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVL 195 (258)
Q Consensus 116 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVv 195 (258)
+++||++|+++|+.|+++.++.++...++.+....|+.........+..+++|+|+||+++.+++.++.+.++++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 68999999999999999999999888888888888888887777777888999999999999999988888999999999
Q ss_pred ccchhhhccCcHHHHHHHHHhC--CC--CccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 196 DEADEMLSRGFKDQIYDVFKHL--NN--DVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 196 DE~h~~~~~~~~~~~~~~~~~l--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
||||++.+.++...+..++..+ +. +.|++++|||++++++++++.++.+|+.|.+..++.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 9999999999999999999854 33 6799999999999999999999999999999776554
No 13
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.6e-39 Score=261.24 Aligned_cols=204 Identities=37% Similarity=0.632 Sum_probs=184.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
..|+++++++.+.+.|.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+.....+.+++|++|+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876655669999999999
Q ss_pred HHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-
Q psy4698 127 LAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEA-GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS- 203 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~- 203 (258)
|+.|+++.++++.... +..+..+.|+.....+...+.. .++|+|+||+++.+++.+..+.+.+++++|+||||++.+
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 9999999999988765 7888888888776666555554 479999999999999998888899999999999999986
Q ss_pred cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 204 RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
.++...+..+++.+++++|++++|||++++++++++.|+++|+.|.+
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 46778888899999889999999999999999999999999998864
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=268.40 Aligned_cols=200 Identities=31% Similarity=0.487 Sum_probs=179.6
Q ss_pred cCcCCCC--CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc----cccceEEE
Q psy4698 47 ENFDDME--LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN----IKECQALI 120 (258)
Q Consensus 47 ~~~~~~~--~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~----~~~~~~li 120 (258)
..|++++ +++.+++.+++.|+..|+++|.++++.+..|+++++++|||||||++|++|++..+... ..+.+++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4577776 99999999999999999999999999999999999999999999999999999988652 24568999
Q ss_pred EeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccch
Q psy4698 121 LAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEAD 199 (258)
Q Consensus 121 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h 199 (258)
++|+++|+.|+++.+++++...+..+....|+.........+..+++|+|+||+++.+++... .+.++++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999988888888899988888777778888999999999999988765 4678899999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCe
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPI 246 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 246 (258)
++.+.++...+..+++.+++.+|+++||||++++++++++.+++++.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998544
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.2e-38 Score=280.31 Aligned_cols=214 Identities=29% Similarity=0.487 Sum_probs=196.1
Q ss_pred ccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc-----c
Q psy4698 40 TNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI-----K 114 (258)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~-----~ 114 (258)
.+.+....+|+++++++.+.+.+.+.|+..|+++|.++++.+++|++++++++||||||++|++|++..+.... .
T Consensus 49 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 128 (434)
T 2db3_A 49 SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELG 128 (434)
T ss_dssp SSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccC
Confidence 44555667899999999999999999999999999999999999999999999999999999999999887542 3
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFV 194 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lV 194 (258)
++++||++|+++|+.|+++.+++++...++.+...+|+.....+...+..+++|+|+||++|.+++.++.+.+.++++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 56899999999999999999999998888888889999888888888888899999999999999999888899999999
Q ss_pred EccchhhhccCcHHHHHHHHHhC--CCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 195 LDEADEMLSRGFKDQIYDVFKHL--NNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 195 vDE~h~~~~~~~~~~~~~~~~~l--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
+||||++++.++...+..++..+ +++.|++++|||+|++++++++.++.+++.+.+...
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 269 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV 269 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc
Confidence 99999999999999999999875 578899999999999999999999999999988644
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=260.11 Aligned_cols=211 Identities=28% Similarity=0.476 Sum_probs=178.2
Q ss_pred cccccCcCCC----CCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccce
Q psy4698 43 DHVAENFDDM----ELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQ 117 (258)
Q Consensus 43 ~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~ 117 (258)
+....+|+++ ++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|++|++..+... ..+.+
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 100 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFR 100 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCC
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCce
Confidence 3344567665 899999999999999999999999999999999999999999999999999999988653 34568
Q ss_pred EEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHhcC--CCCCCCccEEE
Q psy4698 118 ALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI-RKLEAGAQVVVGTPGRVFDMISRG--ALSTKQIRMFV 194 (258)
Q Consensus 118 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~l~~lV 194 (258)
++|++|+++|+.|+++.+++++...+..+....++....... .....+++|+|+||+++.+++.+. .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 999999999999999999999888887777666554332221 122345899999999999999876 56788999999
Q ss_pred Eccchhhhc---cCcHHHHHHHHHhC-CCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 195 LDEADEMLS---RGFKDQIYDVFKHL-NNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 195 vDE~h~~~~---~~~~~~~~~~~~~l-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
+||||++.+ .++...+..++..+ +++.|+++||||+|++++++++.++++|+.|.+...
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999987 46788888887776 457899999999999999999999999999998765
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=269.24 Aligned_cols=226 Identities=73% Similarity=1.174 Sum_probs=201.5
Q ss_pred CCcccCcccccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 31 GMAVDGLIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
....+.....++......|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++++++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~ 103 (414)
T 3eiq_A 24 GMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE 103 (414)
T ss_dssp ------CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCC
T ss_pred ccccccccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHh
Confidence 33344555667777778999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 111 QNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 111 ~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
....+.+++|++|+++|+.|+.+.++.++...+..+....++.........+. .+++|+|+||++|++++.++.+.+.+
T Consensus 104 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 104 LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred hcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 76667799999999999999999999999888888888888887776666655 66899999999999999998888999
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
+++||+||+|++.+.++...+..++..++++.|++++|||++.++..+.+.++.+|..+.+.....+
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT 250 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCC
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999988766554
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.9e-37 Score=268.59 Aligned_cols=212 Identities=67% Similarity=1.056 Sum_probs=196.0
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
...+|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++|+++.+.....+.++||++|+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 44679999999999999999999999999999999999999999999999999999999999988766566799999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc
Q psy4698 125 RELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR 204 (258)
Q Consensus 125 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~ 204 (258)
++|+.|+.+.++.++...++.+..+.|+.....+...+..+++|+|+||+++.+++.++.+.+.++++||+||+|++.+.
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhh
Confidence 99999999999999988899999999998888887788888999999999999999998888899999999999999999
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
++...+..+++.+++..|++++|||++.++.++.+.++.+|..+.+.....+
T Consensus 195 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (410)
T 2j0s_A 195 GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT 246 (410)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCS
T ss_pred hhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcccc
Confidence 9999999999999999999999999999999999999999999887665544
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=263.01 Aligned_cols=212 Identities=33% Similarity=0.486 Sum_probs=189.4
Q ss_pred ccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc--------
Q psy4698 42 WDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI-------- 113 (258)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~-------- 113 (258)
.+....+|+++++++.+.+.|...|+..|+++|.++++.+..|+++++.+|||+|||++|++|++..+....
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 345566899999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ----------ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC
Q psy4698 114 ----------KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG 183 (258)
Q Consensus 114 ----------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~ 183 (258)
.+++++|++|+++|+.|+++.+++++...++.+..+.|+.........+..+++|+|+||++|.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC
Confidence 1257999999999999999999999888888888899998888777788888999999999999999988
Q ss_pred CCCCCCccEEEEccchhhhccCcHHHHHHHHHhC--CC--CccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 184 ALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL--NN--DVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 184 ~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
.+.+.++++||+||+|++.+.++...+..++... +. ..|++++|||+++.+..+.+.++.++..+.+...
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV 243 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 8889999999999999999999999999888753 32 6799999999999999999999999998877543
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.2e-35 Score=256.14 Aligned_cols=215 Identities=65% Similarity=1.001 Sum_probs=192.5
Q ss_pred ccccccccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEE
Q psy4698 40 TNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQAL 119 (258)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~l 119 (258)
.........|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++.+|||+|||++|++|++..+.....+++++
T Consensus 14 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~l 93 (394)
T 1fuu_A 14 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 93 (394)
T ss_dssp ESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred hhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEE
Confidence 34445556799999999999999999999999999999999999999999999999999999999999988766677999
Q ss_pred EEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccch
Q psy4698 120 ILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEAD 199 (258)
Q Consensus 120 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 199 (258)
|++|+++|+.|+.+.++++....+..+....|+.........+. +++|+|+||+++++.+.++.+.+.++++||+||+|
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 99999999999999999998888888888888877665555444 47999999999999999888888999999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
++.+.++...+..++..+++..|++++|||+++.+.+....++.+|..+.+.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL 228 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc
Confidence 99999999999999999999999999999999999999999999999998876554
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-34 Score=253.43 Aligned_cols=207 Identities=43% Similarity=0.705 Sum_probs=188.8
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
..+|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|+++++..+.....+.+++|++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 45799999999999999999999999999999999999999999999999999999999999887765667899999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
+|+.|+.+.++.++...++.+....++............+++|+|+||+++.+++.+....+.++++||+||+|++.+.+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 99999999999999888888888888888777766777789999999999999998888888999999999999998888
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
+...+..++..+++..|++++|||++..+.+++..++.+|..+.+..
T Consensus 180 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 226 (400)
T 1s2m_A 180 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME 226 (400)
T ss_dssp HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS
T ss_pred hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc
Confidence 88888889988888999999999999999999999999998776543
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5e-34 Score=249.21 Aligned_cols=207 Identities=37% Similarity=0.640 Sum_probs=185.0
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
..|+++++++.+.+.|.+.|+..|+++|.++++.+..|+++++.+|||+|||++|+++++..+.....+.+++|++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876656679999999999
Q ss_pred HHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhcc
Q psy4698 127 LAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR 204 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~ 204 (258)
|+.|+.+.++++.... ++.+..+.|+.........+..+ ++|+|+||+++..++.+....+.++++||+||||++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987765 78888888887766665555543 799999999999999988888999999999999999774
Q ss_pred -CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCC
Q psy4698 205 -GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 205 -~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~ 253 (258)
++...+..++...++..|++++|||+++.+..+++.++.+|..+.+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 217 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc
Confidence 6777888888888889999999999999999999999999999887654
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2e-33 Score=245.28 Aligned_cols=206 Identities=40% Similarity=0.656 Sum_probs=183.2
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
..+|+++++++.+.+.+.+.|+..|+++|.++++.+..+ +++++.+|||+|||++|+++++..+.....+.+++|++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 468999999999999999999999999999999999998 899999999999999999999999887666779999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS 203 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~ 203 (258)
+++|+.|+++.+++++...++.+....++...... ..+++|+|+||+++.+.+.+....+.++++||+||+|++.+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 99999999999999988888877776666433221 23589999999999999998888899999999999999987
Q ss_pred -cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 204 -RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 204 -~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
.++...+..+...++++.|++++|||+++.+..+.+.++.++..+.+.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV 212 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc
Confidence 5788888888998989999999999999999999999999998887755443
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.6e-33 Score=246.11 Aligned_cols=208 Identities=38% Similarity=0.607 Sum_probs=180.6
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
...+|+++++++.+.+.|.+.|+..|+++|.++++.+..+ +++++.+|||+|||++|++|++..+.....+++++|++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 3467999999999999999999999999999999999987 89999999999999999999999988777777999999
Q ss_pred ccHHHHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccchh
Q psy4698 123 PTRELAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEADE 200 (258)
Q Consensus 123 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~ 200 (258)
|+++|+.|+.+.+++++... +..+....++...... ...+++|+|+||+++.+++.+ +.+.+.++++||+||+|+
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 99999999999999987654 5666666665543322 134579999999999999865 566788999999999999
Q ss_pred hhc-cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 201 MLS-RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 201 ~~~-~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
+.+ .++...+..+...+++++|++++|||+++.+..+.+.++.+|..+.+..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 235 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc
Confidence 987 5788888889999999999999999999999999999999999988765543
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=252.66 Aligned_cols=208 Identities=39% Similarity=0.613 Sum_probs=177.1
Q ss_pred ccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 46 AENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
..+|+++++++.+.+.|.++|+..|+++|.++++.++.+ +++++.+|||||||++|++|++..+.....++++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 357999999999999999999999999999999999987 899999999999999999999999887777779999999
Q ss_pred cHHHHHHHHHHHHHhcCCC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccchhh
Q psy4698 124 TRELAQQIQKVVIALGDFM-SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~~ 201 (258)
+++|+.|+++.++.++... ++.+....++...... ...+++|+|+||+++++++.+ +.+.+.++++||+||+|++
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 9999999999999987653 4555555555433221 123478999999999999866 5567789999999999999
Q ss_pred hc-cCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 202 LS-RGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 202 ~~-~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
.+ .++...+..+.+.+++++|++++|||++..+..+.+.++.+|..+.+..+..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 303 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET 303 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccC
Confidence 87 57888888899999999999999999999999999999999999988765543
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-32 Score=238.38 Aligned_cols=203 Identities=39% Similarity=0.679 Sum_probs=183.1
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.+|+++++++.+.+.|++.|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+... .+.+++|++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCH
Confidence 46999999999999999999999999999999999888 6999999999999999999998877654 456899999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
+|+.|+.+.++.+....++.+....++.........+. +++|+|+||+++.+.+..+...+.+++++|+||+|++.+.+
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 163 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG 163 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc
Confidence 99999999999998877888888888887766655555 58999999999999999888888999999999999999999
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
+...+..++..+++..+++++|||++....+..+.++.++..+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 209 (367)
T 1hv8_A 164 FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK 209 (367)
T ss_dssp THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec
Confidence 9999999999998999999999999999999999999988877653
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-31 Score=229.25 Aligned_cols=190 Identities=30% Similarity=0.559 Sum_probs=172.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHH
Q psy4698 54 LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133 (258)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~ 133 (258)
+++.+.+.|+++|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++.. +.+++|++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999998763 4589999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHH
Q psy4698 134 VVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDV 213 (258)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~ 213 (258)
.+++++...+..+....++............ ++|+|+||+++.+.+..+.+.+.++++||+||+|++.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 9999988888888888888777666555544 899999999999999888788889999999999999999999999999
Q ss_pred HHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 214 FKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 214 ~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
+..++...+++++|||+++...+....++.++..+..
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 190 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEA 190 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeec
Confidence 9999999999999999999999999999998887754
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2e-32 Score=251.23 Aligned_cols=200 Identities=32% Similarity=0.514 Sum_probs=170.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEcccCCCcchHhHHHHHHHhhhcc----ccceEEEEeccHH
Q psy4698 53 ELSEELLRGIYAYGFEKPSAIQQRAIIPCV--RGNDVIAQAQSGTGKTATFSISILQQVDQNI----KECQALILAPTRE 126 (258)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~--~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~----~~~~~lil~P~~~ 126 (258)
.+++.+.+.+.+.|+..|+++|.++++.++ .|+++++.+|||+|||++|++|+++.+.... .++++||++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 399999999999999999999999999998 7789999999999999999999999887642 3458999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccchh
Q psy4698 127 LAQQIQKVVIALGD----FMSVSCHACIGGTIVRDDIRKL-EAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEADE 200 (258)
Q Consensus 127 l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h~ 200 (258)
|+.|+.+.++++.. .....+....++.........+ ..+++|+|+||++|.+++.+. ...++.+++||+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998753 2345667777777766665555 346899999999999988764 34678899999999999
Q ss_pred hhccCcHHHHHHHHHhCC-------CCccEEEEEeeCChhHHHHHHHhcCCCeEEEecC
Q psy4698 201 MLSRGFKDQIYDVFKHLN-------NDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252 (258)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~ 252 (258)
++++++...+..++..++ ..+|++++|||+++.+.++++.++.+|..+.+..
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~ 245 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 245 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEES
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEee
Confidence 999999988888877653 2679999999999999999999999998887643
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.98 E-value=3.1e-32 Score=249.08 Aligned_cols=199 Identities=32% Similarity=0.517 Sum_probs=168.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEcccCCCcchHhHHHHHHHhhhcc----ccceEEEEeccHH
Q psy4698 53 ELSEELLRGIYAYGFEKPSAIQQRAIIPCV--RGNDVIAQAQSGTGKTATFSISILQQVDQNI----KECQALILAPTRE 126 (258)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~--~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~----~~~~~lil~P~~~ 126 (258)
.+++.+.+.+.+.|+..|+++|.++++.++ .++++++.+|||+|||++|++|+++.+.... .+.++||++|+++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 399999999999999999999999999998 6789999999999999999999999987653 2358999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEEccchh
Q psy4698 127 LAQQIQKVVIALGD----FMSVSCHACIGGTIVRDDIRKL-EAGAQVVVGTPGRVFDMISRG-ALSTKQIRMFVLDEADE 200 (258)
Q Consensus 127 l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h~ 200 (258)
|+.|+++.++.+.. .....+....++.........+ ..+++|+|+||+++++++.+. ...++++++||+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999988643 1235566777777666555554 457899999999999988764 33578899999999999
Q ss_pred hhccCcHHHHHHHHHhCC-------CCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 201 MLSRGFKDQIYDVFKHLN-------NDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
+.++++...+..++..++ +.+|++++|||+++.+.++++.++.++..+.+.
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~ 295 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 295 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEe
Confidence 999999988888876653 367999999999999999999999998887764
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.4e-31 Score=242.02 Aligned_cols=204 Identities=34% Similarity=0.544 Sum_probs=157.3
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.|...++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||||||++|+++++..+.....+.+++|++|++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3555678889999999999999999999999999998 89999999999999999999999988876677999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-c
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS-R 204 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~-~ 204 (258)
+|+.|+++.+++++...++.+....++.... ....+++|+|+||+++++.+.++.+.+.++++||+||+|++.+ .
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 9999999999999877776665544443222 1233589999999999999998888899999999999999887 5
Q ss_pred CcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCcc
Q psy4698 205 GFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEEL 255 (258)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (258)
++...+..++..+++++|++++|||+++.+..+.+.++.++..+.+.....
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL 326 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC
Confidence 788888899999999999999999999999999999999999887766554
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=7.3e-29 Score=232.86 Aligned_cols=187 Identities=17% Similarity=0.261 Sum_probs=160.1
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
+|+++++++.+.+.+++.|+..|+++|.++++. +..++++++++|||||||+++.+++++.+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88999999999999999999999999887743 358999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCc
Q psy4698 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGF 206 (258)
Q Consensus 127 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~ 206 (258)
|+.|+++.++.+.. .++.+....|+...... . ..+++|+|+||+++..++.+....++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG--G-GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc--c-cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999865543 46778777776543322 1 23589999999999999888766688999999999999988789
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 207 KDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 207 ~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
+..+..++.+++.+.|+|++|||+++ ..++.+++
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l 189 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL 189 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh
Confidence 99999999988778999999999986 45566544
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=4.9e-29 Score=219.75 Aligned_cols=178 Identities=19% Similarity=0.210 Sum_probs=144.8
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHH
Q psy4698 57 ELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 57 ~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 135 (258)
.+.+.+++ .|+ .|+++|.++++.+..|+++++.+|||+|||++|+++++..+. .+++++|++|+++|+.|+++.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHH
Confidence 34555555 456 899999999999999999999999999999999999887662 3468999999999999999999
Q ss_pred HHhcCCCCceEEEEECCcch---HHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc--------
Q psy4698 136 IALGDFMSVSCHACIGGTIV---RDDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS-------- 203 (258)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~-------- 203 (258)
+.++. .++.+..+.|+... ......+..+ ++|+|+||+++.+++.. +.+.++++||+||+|++..
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99987 78889899988876 4455566665 99999999999887765 5677899999999997653
Q ss_pred ---cCcHHH-HHHHHHhCC-----------CCccEEEEEee-CChhHH-HHHHHh
Q psy4698 204 ---RGFKDQ-IYDVFKHLN-----------NDVQVILLSAT-MPADVL-DVSMKF 241 (258)
Q Consensus 204 ---~~~~~~-~~~~~~~l~-----------~~~~~i~~SAT-~~~~~~-~~~~~~ 241 (258)
.++... +..++..++ ...|++++||| .|..+. .+.+.+
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHh
Confidence 556666 677777766 78999999999 666544 334443
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.4e-28 Score=230.88 Aligned_cols=187 Identities=18% Similarity=0.224 Sum_probs=158.7
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIP-CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~-l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.+|+++++++.+.+.+.+.|+..++++|.++++. +..++++++++|||||||+++.+++++.+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 4699999999999999999999999999999999 78899999999999999999999999887643 35899999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
+|+.|++..++.+. ..+..+....|+...... .. .+++|+|+||+++..++.+....++++++||+||+|++.+..
T Consensus 86 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 99999999986543 347777777776554332 12 258999999999999998876668899999999999988778
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
++..+..++.+++ +.|+|+||||+++ ..++.+++
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l 195 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL 195 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh
Confidence 8888888888876 7999999999986 46666554
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=7.4e-29 Score=232.25 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=153.3
Q ss_pred CcCCCC--CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 48 NFDDME--LSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 48 ~~~~~~--~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
+|++++ +++.+.+.+++.|+..|+++|.++++.+..++++++++|||||||+++.+++++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477787 8999999999999999999999999999999999999999999999999999988764 35899999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
+|+.|+++.++.+. ..+..+....|+...... . ..+++|+|+||+++..++.+....++++++||+||+|++.+++
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE--H-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS--C-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh--h-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999986543 347788877777654332 1 2358999999999999998876668899999999999998877
Q ss_pred cHHHHHHHHHhC---CCCccEEEEEeeCChhHHHHHHHh
Q psy4698 206 FKDQIYDVFKHL---NNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 206 ~~~~~~~~~~~l---~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
++..+..++.++ +++.|+|+||||+++ ..++.+++
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l 192 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL 192 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh
Confidence 887777666555 578999999999986 56666544
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-28 Score=238.04 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=162.0
Q ss_pred CcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHH
Q psy4698 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTREL 127 (258)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l 127 (258)
.|..+++++.+...+...+...|+++|.++++.+..|++++++||||||||++|+++++..+.. +.+++|++|+++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraL 239 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKAL 239 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHH
Confidence 5666777766666665556668999999999999999999999999999999999999988754 3589999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH
Q psy4698 128 AQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK 207 (258)
Q Consensus 128 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~ 207 (258)
+.|+++.++.+.. .+..+.|+.. ...+++|+|+||++|.+++.++...+.++++||+||||++.+.+++
T Consensus 240 a~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 240 SNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHH
T ss_pred HHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchH
Confidence 9999999998765 4555666654 2345899999999999999988777889999999999999988899
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCChh--HHHHHHHhcCCCeEEEecCC
Q psy4698 208 DQIYDVFKHLNNDVQVILLSATMPAD--VLDVSMKFMRDPIKILVKKE 253 (258)
Q Consensus 208 ~~~~~~~~~l~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~v~~~~~ 253 (258)
..+..++..+++.+|+|+||||+|+. +.+.+..+..+|..+...+.
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~ 356 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 356 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 99999999999999999999999875 44677777777777766443
No 36
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=1.9e-27 Score=217.86 Aligned_cols=185 Identities=18% Similarity=0.257 Sum_probs=147.0
Q ss_pred CCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH
Q psy4698 50 DDMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA 128 (258)
Q Consensus 50 ~~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~ 128 (258)
.++++++.+.+.|++ +|+..|+++|.++++.++.|+++++.+|||+|||++|++|++.. +.++||++|+++|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~ 97 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLM 97 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHH
Confidence 468899999999998 69999999999999999999999999999999999999999752 34899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCcchHHHHH---HH---hcCCcEEEeChHHHH------HHHhcCCCCCCCccEEEEc
Q psy4698 129 QQIQKVVIALGDFMSVSCHACIGGTIVRDDIR---KL---EAGAQVVVGTPGRVF------DMISRGALSTKQIRMFVLD 196 (258)
Q Consensus 129 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~Ilv~Tp~~l~------~~l~~~~~~~~~l~~lVvD 196 (258)
.|+.+.++.+ ++.+..+.++........ .+ ..+++|+|+||++|. +.+.. ...+.++++||||
T Consensus 98 ~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViD 172 (591)
T 2v1x_A 98 EDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVD 172 (591)
T ss_dssp HHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEE
T ss_pred HHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEE
Confidence 9999999887 466666676665443322 22 356899999999874 22322 3346789999999
Q ss_pred cchhhhccC--cHHHHHH--HHHhCCCCccEEEEEeeCChhHHHHHHHhcCCC
Q psy4698 197 EADEMLSRG--FKDQIYD--VFKHLNNDVQVILLSATMPADVLDVSMKFMRDP 245 (258)
Q Consensus 197 E~h~~~~~~--~~~~~~~--~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 245 (258)
|||++.+++ |...+.. .+....++.+++++|||+++.+.+.+..++..+
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~ 225 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE 225 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCC
T ss_pred CcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCC
Confidence 999998776 5444432 344444678999999999999888887777644
No 37
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.2e-28 Score=196.23 Aligned_cols=225 Identities=18% Similarity=0.235 Sum_probs=152.5
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCcccCcccccccccccCcC-CCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCc
Q psy4698 8 NWEDPKNGPAENEAEQPAYNGPPGMAVDGLIETNWDHVAENFD-DMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGND 86 (258)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~ 86 (258)
+|.+|..+........-...+......+++... ....|. .+..++.+.+.+...+...++++|.++++.+..|++
T Consensus 3 ~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~ 78 (235)
T 3llm_A 3 PWSPPQSNWNPWTSSNIDEGPLAFATPEQISMD----LKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSV 78 (235)
T ss_dssp CCCCCCTTEETTTTEECCSSTTTTSCHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSE
T ss_pred CCCCCCCCCCCCcCCccCCCCcccCChhhhcHH----HHHHHHHHhhcCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCE
Confidence 688887777666555433333322222211000 001111 122345555555544444689999999999999999
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccc--cceEEEEeccHHHHHHHHHHHHHh-cCCCCceEEEEECCcchHHHHHHHh
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIK--ECQALILAPTRELAQQIQKVVIAL-GDFMSVSCHACIGGTIVRDDIRKLE 163 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (258)
+++.|+||||||+++.++++......+. +.++++++|+++++.|..+.+... +...+..+........ ....
T Consensus 79 ~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~ 153 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPR 153 (235)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCC
T ss_pred EEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCC
Confidence 9999999999999998888887665433 458999999999999998877653 3333443332221111 0112
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh-hccCcH-HHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHh
Q psy4698 164 AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM-LSRGFK-DQIYDVFKHLNNDVQVILLSATMPADVLDVSMKF 241 (258)
Q Consensus 164 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~-~~~~~~-~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~ 241 (258)
.+++|+|+||+++.+++.. .++++++||+||+|++ ++.++. ..+..++... ++.|++++|||++.+. +.+.|
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~ 227 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYF 227 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHT
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHc
Confidence 4478999999999999876 4789999999999985 555565 3445555554 5789999999999876 77777
Q ss_pred cCCCeE
Q psy4698 242 MRDPIK 247 (258)
Q Consensus 242 ~~~~~~ 247 (258)
.++|++
T Consensus 228 ~~~pvi 233 (235)
T 3llm_A 228 FNCPII 233 (235)
T ss_dssp TSCCCE
T ss_pred CCCCEE
Confidence 777764
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=3e-27 Score=221.03 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=140.3
Q ss_pred HHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc--cceEEEEeccHHHHHHHHHHHHH
Q psy4698 60 RGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK--ECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 60 ~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
..+..+|+..|+++|.++++.++.|+++++++|||+|||++|++++++.+..... +.++||++|+++|+.|+.+.+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4566689999999999999999999999999999999999999999988866432 36899999999999999999999
Q ss_pred hcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEEccchhhhccCcHHHHHH-HHH
Q psy4698 138 LGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-STKQIRMFVLDEADEMLSRGFKDQIYD-VFK 215 (258)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~~~~~~~~~~~~~-~~~ 215 (258)
++...++.+..+.|+.........+..+++|+|+||+.|.+.+..+.+ .+.++++||+||||++.+...+..+.. .+.
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 988788888888888766555555666799999999999999988776 788999999999999876654433332 222
Q ss_pred h-----CCCCccEEEEEeeCC
Q psy4698 216 H-----LNNDVQVILLSATMP 231 (258)
Q Consensus 216 ~-----l~~~~~~i~~SAT~~ 231 (258)
. .++.+++++||||+.
T Consensus 164 ~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCC
T ss_pred HhhcccCCCCCeEEEEeCccc
Confidence 2 246789999999987
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=4.5e-27 Score=213.98 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=133.4
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc--cceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK--ECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
+...|+++|.++++.++.|+++++.+|||+|||++|++|+++.+..... +.++||++|+++|+.|+.+.++.+....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3448999999999999999999999999999999999999998876432 56899999999999999999999988778
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEEccchhhhccCcHHHHH-HHHHh-C---
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-STKQIRMFVLDEADEMLSRGFKDQIY-DVFKH-L--- 217 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~~~~~~~~~~~~-~~~~~-l--- 217 (258)
+.+..+.|+............+++|+|+||++|.+++..+.+ .+.++++||+||||++.+++....+. ..+.. +
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 888888888876666666666789999999999999988877 78999999999999998776544443 22222 1
Q ss_pred CCCccEEEEEeeCC
Q psy4698 218 NNDVQVILLSATMP 231 (258)
Q Consensus 218 ~~~~~~i~~SAT~~ 231 (258)
++..|++++|||++
T Consensus 164 ~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 164 SQLPQILGLTASVG 177 (556)
T ss_dssp --CCEEEEEESCCC
T ss_pred CCCCeEEEEeCCcc
Confidence 35689999999985
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=6.5e-27 Score=212.66 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=138.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc--cceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK--ECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
.|+++|.++++.++.|+++++.+|||+|||++|++|+++.+..... +.++||++|+++|+.|+.+.+++++...++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999998876532 56899999999999999999999988888899
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEEccchhhhccCcHHHHH-HHHHhC-----CC
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-STKQIRMFVLDEADEMLSRGFKDQIY-DVFKHL-----NN 219 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~~~~~~~~~~~~-~~~~~l-----~~ 219 (258)
..+.|+............+++|+|+||+++.+.+..+.+ .+.++++||+||||++.+.+....+. ..+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999998877666666666789999999999999988777 78899999999999997765433332 333321 25
Q ss_pred CccEEEEEeeCCh
Q psy4698 220 DVQVILLSATMPA 232 (258)
Q Consensus 220 ~~~~i~~SAT~~~ 232 (258)
.+|++++|||++.
T Consensus 164 ~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 164 LPQVVGLTASVGV 176 (555)
T ss_dssp CCEEEEEESCCCC
T ss_pred CCeEEEEecCccc
Confidence 5799999999954
No 41
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=190.85 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=120.1
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc---ccceEEEEeccHHHHHH-HHHHHHHhcC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI---KECQALILAPTRELAQQ-IQKVVIALGD 140 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~---~~~~~lil~P~~~l~~q-~~~~~~~~~~ 140 (258)
.....|+++|.++++.+..++++++.+|||+|||++++.+++..+.... .+.+++|++|+++|+.| +.+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3445899999999999999999999999999999999999988775532 35689999999999999 7777888765
Q ss_pred CCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC------CCCCCccEEEEccchhhhccCcHHHHHHH-
Q psy4698 141 FMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA------LSTKQIRMFVLDEADEMLSRGFKDQIYDV- 213 (258)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~------~~~~~l~~lVvDE~h~~~~~~~~~~~~~~- 213 (258)
. ++.+..+.|+............+++|+|+||+.+...+.... ..+.++++||+||||++...++...+...
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 566667776665444444444568999999999999887643 56788999999999999877666655432
Q ss_pred HHhC-------------CCCccEEEEEee
Q psy4698 214 FKHL-------------NNDVQVILLSAT 229 (258)
Q Consensus 214 ~~~l-------------~~~~~~i~~SAT 229 (258)
+... .+.+++|++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 156899999998
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=2.7e-26 Score=217.59 Aligned_cols=167 Identities=17% Similarity=0.228 Sum_probs=135.6
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc--cceEEEEeccHHHHHHHHHHHHHhcCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK--ECQALILAPTRELAQQIQKVVIALGDFM 142 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~ 142 (258)
.|+..|+++|.++++.++.|+++++.+|||+|||++|++|++..+..... +.++||++|+++|+.|+...+++++...
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999999999998876532 5689999999999999999999998877
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEEccchhhhccCcHHHHH-HHHHh----
Q psy4698 143 SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-STKQIRMFVLDEADEMLSRGFKDQIY-DVFKH---- 216 (258)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~~~~~~~~~~~~-~~~~~---- 216 (258)
++.+..++|+............+++|+|+||++|.+.+..+.+ .+.++++||+||||++...+.+..+. ..+..
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 8899999998877766666777899999999999999988777 78899999999999987765444443 22222
Q ss_pred CCCCccEEEEEeeCC
Q psy4698 217 LNNDVQVILLSATMP 231 (258)
Q Consensus 217 l~~~~~~i~~SAT~~ 231 (258)
..+.+|++++|||++
T Consensus 404 ~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 404 ASQLPQILGLTASVG 418 (797)
T ss_dssp CCCCCEEEEEESCCC
T ss_pred CCCCCeEEEEcCCcc
Confidence 145689999999985
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=1.7e-26 Score=209.10 Aligned_cols=192 Identities=15% Similarity=0.207 Sum_probs=146.5
Q ss_pred cCcCCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 47 ENFDDMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.+|+++++++.+.+.|++ +|+..++++|.++++.+..|+++++.+|||+|||++|++|++.. ..++||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 469999999999999998 89999999999999999999999999999999999999998743 24799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HH-HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 126 ELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RK-LEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 126 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
+|+.|+.+.++.+ ++.+..+.++....... .. ....++|+|+||+++........+...++++|||||||++
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999999876 35566666665443321 22 2345899999999985322222233478999999999999
Q ss_pred hccC--cHHHH---HHHHHhCCCCccEEEEEeeCChhHHH-HHHHh-cCCCeEEE
Q psy4698 202 LSRG--FKDQI---YDVFKHLNNDVQVILLSATMPADVLD-VSMKF-MRDPIKIL 249 (258)
Q Consensus 202 ~~~~--~~~~~---~~~~~~l~~~~~~i~~SAT~~~~~~~-~~~~~-~~~~~~v~ 249 (258)
.+++ +...+ ..+...+ ++.+++++|||++....+ +.+.+ +.+|.++.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 205 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe
Confidence 8765 43333 3344455 468899999999987665 44433 34665543
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.94 E-value=1.9e-26 Score=223.60 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=144.9
Q ss_pred HHHH-HCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 60 RGIY-AYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 60 ~~l~-~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
+.+. ..|+ .|+++|.++++.++.|+++++++|||||||++++++++..+. .+.++||++|+++|+.|+++.++.+
T Consensus 69 ~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 69 SFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3443 3577 799999999999999999999999999999999888887763 3468999999999999999999998
Q ss_pred cCCCCceEEEEECCcch---HHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhc-----------
Q psy4698 139 GDFMSVSCHACIGGTIV---RDDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLS----------- 203 (258)
Q Consensus 139 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~----------- 203 (258)
+ ..++.+..++|+... ......+..+ ++|+|+||++|.+++.. +.++++++||+||||++..
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 7 778899999998876 5566677766 99999999999888765 5677899999999986554
Q ss_pred cCcHHH-HHHHHHhCC-----------CCccEEEEEee-CChhHH-HHHHHhc
Q psy4698 204 RGFKDQ-IYDVFKHLN-----------NDVQVILLSAT-MPADVL-DVSMKFM 242 (258)
Q Consensus 204 ~~~~~~-~~~~~~~l~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~ 242 (258)
.++... +..+++.++ ++.|++++||| .|..+. .+.+.++
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l 274 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL 274 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce
Confidence 566667 778888776 78999999999 566554 3344443
No 45
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.6e-26 Score=217.80 Aligned_cols=173 Identities=22% Similarity=0.293 Sum_probs=144.6
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+| .|+++|.++++.+..|+++++++|||||||++|.++++..+.. +.+++|++|+++|+.|++..++.+..
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~---- 154 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG---- 154 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS----
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC----
Confidence 456 5999999999999999999999999999999999999887753 35899999999999999999988764
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
.+..+.|+.... .+++|+|+||++|.+++.++...+.++++||+||+|++.+.+++..+..++..+++++|+|
T Consensus 155 ~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il 227 (1010)
T 2xgj_A 155 DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 227 (1010)
T ss_dssp CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE
T ss_pred CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE
Confidence 455666665432 3579999999999999988878889999999999999998889999999999999999999
Q ss_pred EEEeeCChhHH--HHHHHhcCCCeEEEecC
Q psy4698 225 LLSATMPADVL--DVSMKFMRDPIKILVKK 252 (258)
Q Consensus 225 ~~SAT~~~~~~--~~~~~~~~~~~~v~~~~ 252 (258)
++|||+++..+ +.+....+.+..+...+
T Consensus 228 ~LSATi~n~~e~a~~l~~~~~~~~~vi~~~ 257 (1010)
T 2xgj_A 228 FLSATIPNAMEFAEWICKIHSQPCHIVYTN 257 (1010)
T ss_dssp EEECCCTTHHHHHHHHHHHHTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecC
Confidence 99999987532 33333445666665543
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.93 E-value=3.3e-26 Score=221.74 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=145.0
Q ss_pred HHHH-HCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 60 RGIY-AYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 60 ~~l~-~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
+.+. ..|+. | ++|.++++.++.|+|+++.+|||||||+ |.+|++..+... +++++|++|+++|+.|+++.++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 4444 47998 9 9999999999999999999999999998 888888777653 468999999999999999999999
Q ss_pred cCCCCc----eEEEEECCcchHH---HHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 139 GDFMSV----SCHACIGGTIVRD---DIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 139 ~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
+...++ .+..++|+..... ....+.+ ++|+|+||++|.+++.+ ++++++||+||||++++ ++..+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 888887 8888888877654 3344555 89999999999987765 66899999999999987 467777
Q ss_pred HHHHhC-----------CCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 212 DVFKHL-----------NNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 212 ~~~~~l-----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
.++..+ +...|++++|||++.. ..+...++.++..+.+.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~ 245 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG 245 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc
Confidence 777776 3568999999999887 65555555544444443
No 47
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=2.5e-25 Score=213.68 Aligned_cols=167 Identities=17% Similarity=0.228 Sum_probs=133.5
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccc--cceEEEEeccHHHHHHHHHHHHHhcCCC
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIK--ECQALILAPTRELAQQIQKVVIALGDFM 142 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~ 142 (258)
.|+..|+++|.++++.++.|+++++.+|||+|||++|+++++..+..... +.++||++|+++|+.|++..+++++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 45779999999999999999999999999999999999999988776431 5689999999999999999999998877
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEEccchhhhccCcHHHHH-HHHHh----
Q psy4698 143 SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL-STKQIRMFVLDEADEMLSRGFKDQIY-DVFKH---- 216 (258)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~~~~~~~~~~~~-~~~~~---- 216 (258)
++.+..++|+.........+..+++|+|+||++|.+.+.++.+ .+.++++||+||||++...+....+. .++..
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 8889888988866655555556689999999999999988776 78899999999999987765444433 22222
Q ss_pred CCCCccEEEEEeeCC
Q psy4698 217 LNNDVQVILLSATMP 231 (258)
Q Consensus 217 l~~~~~~i~~SAT~~ 231 (258)
..+..|++++|||+.
T Consensus 404 ~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 404 ASQLPQILGLTASVG 418 (936)
T ss_dssp CSCCCEEEEEESCCC
T ss_pred CCCcCeEEEecCCcc
Confidence 145689999999985
No 48
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.4e-24 Score=193.45 Aligned_cols=169 Identities=22% Similarity=0.238 Sum_probs=139.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.|+++|.++++.+..+ ++++.+|||+|||++++.+++..+. ..+.++||++|+++|+.|+.+.++++.......+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6999999999999999 9999999999999999999988776 345589999999999999999999987544557777
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
+.|+....... ....+++|+|+||+.+...+..+.+.+.++++||+||||++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 77776655433 33345799999999999999888888899999999999998766666677777766677899999999
Q ss_pred eCChh---HHHHHHHh
Q psy4698 229 TMPAD---VLDVSMKF 241 (258)
Q Consensus 229 T~~~~---~~~~~~~~ 241 (258)
|+.++ +.+++..+
T Consensus 165 Tp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNL 180 (494)
T ss_dssp CSCSSHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHhc
Confidence 99754 44444433
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1.8e-25 Score=223.86 Aligned_cols=172 Identities=21% Similarity=0.319 Sum_probs=137.7
Q ss_pred CCCCCcHHHHHHhhhhh-cCCcEEEEcccCCCcchHhHHHHHHHhhhc--------cccceEEEEeccHHHHHHHHHHHH
Q psy4698 66 GFEKPSAIQQRAIIPCV-RGNDVIAQAQSGTGKTATFSISILQQVDQN--------IKECQALILAPTRELAQQIQKVVI 136 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~-~g~~~li~~~tGsGKT~~~l~~~l~~l~~~--------~~~~~~lil~P~~~l~~q~~~~~~ 136 (258)
||..++++|.++++.+. .++|++++||||||||+++.+++++.+... ..+.++||++|+++|+.|.++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78899999999999865 578999999999999999999999998652 235689999999999999999998
Q ss_pred HhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC--CCCCccEEEEccchhhhccCcHHHHHHHH
Q psy4698 137 ALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGAL--STKQIRMFVLDEADEMLSRGFKDQIYDVF 214 (258)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~~~l~~lVvDE~h~~~~~~~~~~~~~~~ 214 (258)
+.....++.+..+.|+...... . ..+++|+|+|||++..++++... .++++++||+||+|.+.+ .++..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~--~-~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE--E-ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT--T-GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc--c-cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8878889999888887654322 1 23489999999998666654322 367899999999996644 5666665554
Q ss_pred H-------hCCCCccEEEEEeeCChhHHHHHHHhc
Q psy4698 215 K-------HLNNDVQVILLSATMPADVLDVSMKFM 242 (258)
Q Consensus 215 ~-------~l~~~~~~i~~SAT~~~~~~~~~~~~~ 242 (258)
. .+++.+|+|++|||+|+ .++++++.-
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~ 265 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLR 265 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTT
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhC
Confidence 4 34678999999999985 566776543
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=4.4e-25 Score=221.14 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhc-CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHH
Q psy4698 54 LSEELLRGIYAYGFEKPSAIQQRAIIPCVR-GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQ 132 (258)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~-g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~ 132 (258)
+.....+.+...+|..++|+|.++++.+.. ++|++++||||||||+++.+++++.+.... +.+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 445667777777899999999999999865 578999999999999999999999987653 458999999999999999
Q ss_pred HHHHH-hcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC--CCCCCCccEEEEccchhhhccCcHHH
Q psy4698 133 KVVIA-LGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRG--ALSTKQIRMFVLDEADEMLSRGFKDQ 209 (258)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~l~~lVvDE~h~~~~~~~~~~ 209 (258)
+.+++ ++...+..+..+.|+...... . ..+++|+|+||+++..++++. ...++++++||+||+|.+.+ ..+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~--~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK--L-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH--H-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh--h-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCcc
Confidence 98865 667788888888887654322 2 234799999999987777652 22367899999999997765 45655
Q ss_pred HHHHHHh-------CCCCccEEEEEeeCChhHHHHHHHhcCC
Q psy4698 210 IYDVFKH-------LNNDVQVILLSATMPADVLDVSMKFMRD 244 (258)
Q Consensus 210 ~~~~~~~-------l~~~~~~i~~SAT~~~~~~~~~~~~~~~ 244 (258)
+..++.+ +++.+|+|++|||+++ .+++.++...+
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~ 1106 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCS 1106 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCC
Confidence 5544433 4678999999999985 57788776543
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=1.6e-25 Score=215.47 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=139.1
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+| .|+++|.++++.+..|+++++.+|||||||++|++++...+.. +.+++|++|+++|+.|+++.++++.. +.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 355 6899999999999999999999999999999999988776543 35899999999999999999988653 45
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
.+..+.|+... ...++|+|+||++|.+++......+.++++||+||+|++.+++++..+..++..++++.|+|
T Consensus 110 ~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 66777776643 23479999999999999988877888999999999999999888988999999999999999
Q ss_pred EEEeeCChhHHHHHHHhc
Q psy4698 225 LLSATMPADVLDVSMKFM 242 (258)
Q Consensus 225 ~~SAT~~~~~~~~~~~~~ 242 (258)
++|||+++.. ++..++.
T Consensus 183 lLSAT~~n~~-ef~~~l~ 199 (997)
T 4a4z_A 183 LLSATVPNTY-EFANWIG 199 (997)
T ss_dssp EEECCCTTHH-HHHHHHH
T ss_pred EEcCCCCChH-HHHHHHh
Confidence 9999998653 5555543
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.91 E-value=4.7e-25 Score=206.30 Aligned_cols=163 Identities=13% Similarity=0.185 Sum_probs=126.7
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc---ccceEEEEeccHHHHHHH-HHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI---KECQALILAPTRELAQQI-QKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~---~~~~~lil~P~~~l~~q~-~~~~~~~~~~~~~ 144 (258)
.|+++|.++++.++.|+++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 799999999999999999999999999999999999998876542 225899999999999999 9999998765 46
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH------hcCCCCCCCccEEEEccchhhhccCcHHHHHH-HHHh-
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMI------SRGALSTKQIRMFVLDEADEMLSRGFKDQIYD-VFKH- 216 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l------~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~-~~~~- 216 (258)
.+..+.|+............+++|+|+||+.|.+.+ ....+.+.++++|||||||++...+.+..+.. .+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 777778877665555555677999999999999988 44557788999999999998865443333222 2211
Q ss_pred ---CC---------CCccEEEEEeeCCh
Q psy4698 217 ---LN---------NDVQVILLSATMPA 232 (258)
Q Consensus 217 ---l~---------~~~~~i~~SAT~~~ 232 (258)
.. +.++++++|||++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hcccccccccccCCCCCEEEEecccccc
Confidence 11 56899999999986
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.91 E-value=1.6e-24 Score=181.67 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=125.2
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.|+++|.++++.+..+++.+++++||+|||++++.++...+... +.+++|++|+++|+.|+.+.+++++......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999988888899999999999999988777665532 2389999999999999999999987766666766
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
..++..... ....+.+|+|+||+.+... ....+.++++||+||||++.+ ..+..+++.+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 666654322 1224589999999876533 223467889999999999853 467778888877899999999
Q ss_pred eCChhHHHHHH
Q psy4698 229 TMPADVLDVSM 239 (258)
Q Consensus 229 T~~~~~~~~~~ 239 (258)
|+++.......
T Consensus 261 Tp~~~~~~~~~ 271 (282)
T 1rif_A 261 SLRDGKANIMQ 271 (282)
T ss_dssp SCCTTSTTHHH
T ss_pred CCCCcchHHHH
Confidence 99876444433
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=2.3e-23 Score=193.27 Aligned_cols=161 Identities=18% Similarity=0.254 Sum_probs=135.8
Q ss_pred HCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC
Q psy4698 64 AYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS 143 (258)
Q Consensus 64 ~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 143 (258)
..|+ .|+++|..+++.+++|+ +..++||+|||++|.+|++..... +.+++|++||++||.|..+++..++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4689 99999999999999999 999999999999999999854433 34799999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh-ccC----------
Q psy4698 144 VSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML-SRG---------- 205 (258)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~-~~~---------- 205 (258)
+++.+.+|+...... ....+++|+|+||+.| ++++..+ .+.++++.++|+||||+|+ +..
T Consensus 153 l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 999999998765433 3334689999999999 7776543 3567899999999999998 543
Q ss_pred -----cHHHHHHHHHhCC---------CCccEE-----------------EEEeeCCh
Q psy4698 206 -----FKDQIYDVFKHLN---------NDVQVI-----------------LLSATMPA 232 (258)
Q Consensus 206 -----~~~~~~~~~~~l~---------~~~~~i-----------------~~SAT~~~ 232 (258)
++..+..++..++ +..|++ ++|||++.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 6788999999997 367777 89999874
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.90 E-value=1.3e-23 Score=189.75 Aligned_cols=157 Identities=21% Similarity=0.214 Sum_probs=128.2
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEE
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCH 147 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 147 (258)
..|+++|.++++.+..+++++++++||+|||++++.++...+... +.+++|++|+++|+.|+++.+++++...+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 379999999999999999999999999999999999888777643 248999999999999999999998776667777
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.++...... ...+++|+|+||+.+.. .....++++++||+||+|++.. ..+..+++.+++..+++++|
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 77777554433 34568999999997543 3334567899999999998754 45667788888888999999
Q ss_pred eeCChhHHH
Q psy4698 228 ATMPADVLD 236 (258)
Q Consensus 228 AT~~~~~~~ 236 (258)
||+++....
T Consensus 260 ATp~~~~~~ 268 (510)
T 2oca_A 260 GSLRDGKAN 268 (510)
T ss_dssp SCGGGCSSC
T ss_pred eCCCCCccc
Confidence 999876433
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.89 E-value=1.1e-22 Score=190.79 Aligned_cols=167 Identities=21% Similarity=0.246 Sum_probs=130.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHH
Q psy4698 56 EELLRGIYAYGFEKPSAIQQRAIIPCVRG------NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQ 129 (258)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~ 129 (258)
..+.+.+...+| .|+++|.++++.+..+ .+++++|+||||||++|+++++..+..+ .+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 444555567888 9999999999998775 5899999999999999999999887643 58999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEECCcchHH---HHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC
Q psy4698 130 QIQKVVIALGDFMSVSCHACIGGTIVRD---DIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG 205 (258)
Q Consensus 130 q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~ 205 (258)
|+++.++++....++.+..++|+..... ....+..+ ++|+|+||+.+.+ .+.++++++||+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 9999999998888889988888876544 23444454 8999999987643 3568899999999999863221
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCChhHHH
Q psy4698 206 FKDQIYDVFKHLNNDVQVILLSATMPADVLD 236 (258)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~ 236 (258)
...+......+++++||||+......
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHH
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHH
Confidence 12223334578999999998665444
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=5.2e-22 Score=193.62 Aligned_cols=187 Identities=20% Similarity=0.218 Sum_probs=145.1
Q ss_pred CCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhc----CC--cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 51 DMELSEELLRGIYA-YGFEKPSAIQQRAIIPCVR----GN--DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 51 ~~~~~~~l~~~l~~-~~~~~~~~~Q~~~~~~l~~----g~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
.++.+....+.+.. +++ .++++|.++++.++. |+ +++++++||+|||++++.+++..+.. +.+++|++|
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvP 660 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVP 660 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECS
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEec
Confidence 45567777776654 566 579999999999876 66 89999999999999999888876654 348999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCcchHH---HHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEEccch
Q psy4698 124 TRELAQQIQKVVIALGDFMSVSCHACIGGTIVRD---DIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEAD 199 (258)
Q Consensus 124 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 199 (258)
|++|+.|+++.+++.....++.+..+.+...... ....+..+ ++|+|+||+.+. ..+.++++++||+||+|
T Consensus 661 t~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 661 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp SHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGG
T ss_pred hHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechH
Confidence 9999999999999887777777777766544332 23344444 899999996542 34678899999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 200 EMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
++ +......++.++.++++++||||+++.........+.++.++..+
T Consensus 736 ~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~ 782 (1151)
T 2eyq_A 736 RF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 782 (1151)
T ss_dssp GS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC
T ss_pred hc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC
Confidence 84 344556677777889999999998777777777777776665443
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=2.5e-22 Score=186.36 Aligned_cols=160 Identities=17% Similarity=0.225 Sum_probs=136.6
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|+ .|+++|..+++.+++|+ +..++||+|||+++.+|++.....+ .+++|++||++||.|...++..++..+++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g---~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG---NGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 577 99999999999999998 9999999999999999997654432 37999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhhc--------------
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEMLS-------------- 203 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~~-------------- 203 (258)
.+.+..|+...... ....+++|+|+||+.| ++++..+ .+.++++.++|+||||+|+.
T Consensus 182 sv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 99999988765433 3334589999999999 7888654 36678899999999999983
Q ss_pred --cCcHHHHHHHHHhCC---------CCccEE-----------------EEEeeCCh
Q psy4698 204 --RGFKDQIYDVFKHLN---------NDVQVI-----------------LLSATMPA 232 (258)
Q Consensus 204 --~~~~~~~~~~~~~l~---------~~~~~i-----------------~~SAT~~~ 232 (258)
.+++..+..++..++ +..|++ ++|||++.
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 247789999999997 677888 89999875
No 59
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=9.5e-23 Score=188.79 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=113.2
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|+++|..+++.+++|+ +..++||+|||++|.+|++..... +.+++|++||++||.|.+..+..++...++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 355 89999999999999999 999999999999999999865543 347999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEEccchhhh-cc------------
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRG------ALSTKQIRMFVLDEADEML-SR------------ 204 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~~~-~~------------ 204 (258)
.+.+++|+..... +....+++|+|+||+.| ++++..+ .+.++++.++|+||||+|+ +.
T Consensus 145 ~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 9999999876542 33444689999999999 7888754 2567899999999999998 43
Q ss_pred ---CcHHHHHHHHHhCCC
Q psy4698 205 ---GFKDQIYDVFKHLNN 219 (258)
Q Consensus 205 ---~~~~~~~~~~~~l~~ 219 (258)
+++..+..++..+++
T Consensus 223 ~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp ------------------
T ss_pred cchhHHHHHHHHHHhchh
Confidence 356777888888764
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.86 E-value=2.3e-21 Score=173.49 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=110.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce-EE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS-CH 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 147 (258)
.|+++|.++++.+..+++++++++||+|||++++.++... +.+++|++|+++|+.|+.+.++++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6899999999999999999999999999999998888764 358999999999999999988875 456 66
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.|+... ..+|+|+||+.+...+..- .+++++||+||+|++.+..+.. +++.+ +..+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 66665532 4789999999987665421 2458999999999988766543 44444 457899999
Q ss_pred eeCC
Q psy4698 228 ATMP 231 (258)
Q Consensus 228 AT~~ 231 (258)
||+.
T Consensus 226 ATp~ 229 (472)
T 2fwr_A 226 ATFE 229 (472)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 9987
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.85 E-value=1.7e-20 Score=176.46 Aligned_cols=198 Identities=17% Similarity=0.198 Sum_probs=136.6
Q ss_pred cccCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh-cCCcEEEEcccCCCcchHhHHHHH--HHhhhccccceEEEE
Q psy4698 45 VAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCV-RGNDVIAQAQSGTGKTATFSISIL--QQVDQNIKECQALIL 121 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~-~g~~~li~~~tGsGKT~~~l~~~l--~~l~~~~~~~~~lil 121 (258)
....|.++++++.+.+.+..++ ..|++.|+++++.++ .+++++++||||||||+. +|++ ......+.+.+++++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEec
Confidence 4567999999999999999887 688999999988765 557899999999999994 4444 222222235679999
Q ss_pred eccHHHHHHHHHHHHH-hcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchh
Q psy4698 122 APTRELAQQIQKVVIA-LGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADE 200 (258)
Q Consensus 122 ~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 200 (258)
+|+++++.|++..+.. ++...+..+........ ....+.+|+|+||+.+.+.+... ..+.++++||+||+|.
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHE 219 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccc
Confidence 9999999999876654 33333333332111111 11235789999999999877664 4588999999999995
Q ss_pred -hhccCcH-HHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhcCCCeEEEecCCccc
Q psy4698 201 -MLSRGFK-DQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256 (258)
Q Consensus 201 -~~~~~~~-~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (258)
.++.... ..+..+. ...++.|+|+||||++. ..+. .++.++.++.+.+...+
T Consensus 220 R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr~~p 273 (773)
T 2xau_A 220 RTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGRTYP 273 (773)
T ss_dssp CCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCCCCC
T ss_pred cccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHH-HHhcCCCcccccCcccc
Confidence 4443332 2333333 33467899999999964 3444 45555556666655443
No 62
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=1.6e-20 Score=153.37 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=107.2
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCce-EE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS-CH 147 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 147 (258)
.++++|.++++.+..++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 7899999999999999999999999999999988776553 357999999999999999988774 455 55
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 148 ACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.++.. ...+|+|+|++.+...... ....+++||+||+|++.+..+. .++..++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 5555543 2478999999998765543 1245889999999998655433 3445554 57899999
Q ss_pred eeCCh
Q psy4698 228 ATMPA 232 (258)
Q Consensus 228 AT~~~ 232 (258)
||+++
T Consensus 226 ATp~r 230 (237)
T 2fz4_A 226 ATFER 230 (237)
T ss_dssp ESCC-
T ss_pred cCCCC
Confidence 99875
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=2e-22 Score=185.29 Aligned_cols=181 Identities=15% Similarity=0.107 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHH
Q psy4698 52 MELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQI 131 (258)
Q Consensus 52 ~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~ 131 (258)
+++++.+.+.+... ...++|+|..+++.+..|+++++.++||||||++|++|+++.+... +.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 44565555544332 3677888888899999999999999999999999999999888763 46899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 132 QKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
++.++. ..+. +.... .. .....+..+.++|.+.+...+... ..++++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 987752 2222 11111 00 011233567788888887666554 45889999999999987 555666777
Q ss_pred HHHHhCC-CCccEEEEEeeCChhHHHHHHHhcCCCeEEEec
Q psy4698 212 DVFKHLN-NDVQVILLSATMPADVLDVSMKFMRDPIKILVK 251 (258)
Q Consensus 212 ~~~~~l~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 251 (258)
.++..++ ++.|+++||||++..+..+.+ .++.++.+.
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~ 336 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIE 336 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeec
Confidence 7776664 679999999999987554333 356665554
No 64
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=1.6e-21 Score=173.71 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=117.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcE-EEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDV-IAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~-li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
|+..++++|. +++.+++++++ ++++|||||||++|++|++..+... +.+++|++|+++|+.|+++.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 5667888885 79999988876 9999999999999999998877653 4689999999999999998774 22
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHH-HhCCCCccE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVF-KHLNNDVQV 223 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~-~~l~~~~~~ 223 (258)
.+......... ....+..|.++|++.+...+... ..++++++||+||+|++ +..+......+. ...++++|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 22211111100 11234679999999988877654 46789999999999976 322222222222 223467999
Q ss_pred EEEEeeCChhHHHHHHHhcCCCeEEEe
Q psy4698 224 ILLSATMPADVLDVSMKFMRDPIKILV 250 (258)
Q Consensus 224 i~~SAT~~~~~~~~~~~~~~~~~~v~~ 250 (258)
++||||++..... .+..++.++.+
T Consensus 145 i~~SAT~~~~~~~---~~~~~~~~~~~ 168 (451)
T 2jlq_A 145 IFMTATPPGSTDP---FPQSNSPIEDI 168 (451)
T ss_dssp EEECSSCTTCCCS---SCCCSSCEEEE
T ss_pred EEEccCCCccchh---hhcCCCceEec
Confidence 9999999876543 24456666654
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.84 E-value=3.1e-21 Score=176.97 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=115.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.++.+|..+++.+..++++++.||||||||.++.+++++ ++.+++|++|+++|+.|+++.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 566778888888888999999999999999999988876 24589999999999999998776543 233344
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCcc--EEEE
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQ--VILL 226 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~--~i~~ 226 (258)
..++.. ...+++|+|+||++| +....+.++++++||+||+|+ ++.++...+..+++.++...+ +++|
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 445432 345689999999997 466677888999999999975 566677778888888877666 7888
Q ss_pred EeeCChh
Q psy4698 227 SATMPAD 233 (258)
Q Consensus 227 SAT~~~~ 233 (258)
|||++..
T Consensus 357 SAT~~~~ 363 (666)
T 3o8b_A 357 TATPPGS 363 (666)
T ss_dssp ESSCTTC
T ss_pred CCCCCcc
Confidence 9999974
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.81 E-value=1.6e-20 Score=172.58 Aligned_cols=150 Identities=20% Similarity=0.239 Sum_probs=91.6
Q ss_pred CCcHHHHHHhhhhhc----C-CcEEEEcccCCCcchHhHHHHHHHhhhcc-------ccceEEEEeccHHHHHHHH-HHH
Q psy4698 69 KPSAIQQRAIIPCVR----G-NDVIAQAQSGTGKTATFSISILQQVDQNI-------KECQALILAPTRELAQQIQ-KVV 135 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~----g-~~~li~~~tGsGKT~~~l~~~l~~l~~~~-------~~~~~lil~P~~~l~~q~~-~~~ 135 (258)
.|+++|.++++.+.. | ++++++++||+|||++++..+. .+...+ .+.++||++|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 6699999999999999755444 444333 5679999999999999999 766
Q ss_pred HHhcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc----CCCCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 136 IALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISR----GALSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~----~~~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
+.++. .+....++ ....+.+|+|+||++|...... ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 65543 22222221 2234589999999999877642 33556789999999999985432 34556
Q ss_pred HHHHhCCCCccEEEEEeeCChh
Q psy4698 212 DVFKHLNNDVQVILLSATMPAD 233 (258)
Q Consensus 212 ~~~~~l~~~~~~i~~SAT~~~~ 233 (258)
.++..++ ..+++++|||....
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLRE 344 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCT
T ss_pred HHHHhCC-cceEEEeccccccc
Confidence 6777775 47799999997754
No 67
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=4.2e-19 Score=164.70 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|+ .|+++|..+++.+++|+ +..+.||+|||+++.+|++..... +.+++|++||+.||.|.+..+..+....++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 688 99999999999999999 999999999999999999655543 247999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCC---CccEEEEccchhhhc
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV-FDMISRGA------LSTK---QIRMFVLDEADEMLS 203 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~---~l~~lVvDE~h~~~~ 203 (258)
.+.+..|+...... ....+++|+|+||+.| ++++..+. +.++ ++.++|+||+|+++.
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 99999988764333 3344689999999999 88887652 4567 899999999998863
No 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.78 E-value=2.2e-19 Score=160.13 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=101.4
Q ss_pred HhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchH
Q psy4698 77 AIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVR 156 (258)
Q Consensus 77 ~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
....+..++++++++|||||||++|++|++..+... ++++||++|+++|+.|+++.++ +..+....+...
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~-- 83 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQ-- 83 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEecccc--
Confidence 345567789999999999999999999999887653 4689999999999999998775 222221111100
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh-----hccCcHHHHHHHHHhCCCCccEEEEEeeCC
Q psy4698 157 DDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM-----LSRGFKDQIYDVFKHLNNDVQVILLSATMP 231 (258)
Q Consensus 157 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~-----~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~ 231 (258)
.....+..+.++|.+.+...+... ..++++++||+||+|++ ...++... +. .+++.|+++||||++
T Consensus 84 ---~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~----~~-~~~~~~~il~SAT~~ 154 (459)
T 2z83_A 84 ---REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT----KV-ELGEAAAIFMTATPP 154 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH----HH-HTTSCEEEEECSSCT
T ss_pred ---cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH----Hh-ccCCccEEEEEcCCC
Confidence 011234567788988877666554 46889999999999973 22222111 11 236789999999999
Q ss_pred hhHHHHHHHhcCCCeEE
Q psy4698 232 ADVLDVSMKFMRDPIKI 248 (258)
Q Consensus 232 ~~~~~~~~~~~~~~~~v 248 (258)
..+..+... ..|+.+
T Consensus 155 ~~~~~~~~~--~~pi~~ 169 (459)
T 2z83_A 155 GTTDPFPDS--NAPIHD 169 (459)
T ss_dssp TCCCSSCCC--SSCEEE
T ss_pred cchhhhccC--CCCeEE
Confidence 876544322 455543
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.77 E-value=1.4e-18 Score=167.06 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=114.0
Q ss_pred CCcHHHHHHhhhhhc--------------CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCVR--------------GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV 134 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~--------------g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~ 134 (258)
.|+++|.+|++.++. +++.++.++||||||+++ ++++..+.......++||++|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998765 367999999999999997 66666555433446899999999999999999
Q ss_pred HHHhcCCCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCC--CCCCCccEEEEccchhhhccCcHHHHH
Q psy4698 135 VIALGDFMSVSCHACIGGTIVRDDIRKLE-AGAQVVVGTPGRVFDMISRGA--LSTKQIRMFVLDEADEMLSRGFKDQIY 211 (258)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~~~~~~~~~~~~ 211 (258)
++.++... ..++.........+. .+.+|+|+||++|..++.... ..++...+||+||||++... ....
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 98876431 123333444444443 458999999999998876532 23456789999999997532 2344
Q ss_pred HHHHhCCCCccEEEEEeeCCh
Q psy4698 212 DVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 212 ~~~~~l~~~~~~i~~SAT~~~ 232 (258)
.+...++ +.++++||||+..
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCC
T ss_pred HHHHhCC-cccEEEEeCCccc
Confidence 5566664 4789999999864
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=6.1e-20 Score=162.92 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=93.6
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI 159 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (258)
++.+|+++++++|||||||++|++|+++.+... +.+++|++||++|+.|+++.++.+. +. . ..+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~~----v~--~-~~~~~----- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGLD----VK--F-HTQAF----- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTSC----EE--E-ESSCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcCC----eE--E-ecccc-----
Confidence 467899999999999999999999999877654 3589999999999999999876432 21 1 11100
Q ss_pred HHHhcCCcEEEeChHHHHHHHhc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC-CCCccEEEEEeeC
Q psy4698 160 RKLEAGAQVVVGTPGRVFDMISR--------GALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL-NNDVQVILLSATM 230 (258)
Q Consensus 160 ~~~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~i~~SAT~ 230 (258)
-.++||+.+.+++.+ ....++++++||+||+|++ +.++...+..+...+ +.++|+++||||+
T Consensus 70 --------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 70 --------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp --------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred --------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 025666554432221 2245789999999999987 333322222222222 3679999999999
Q ss_pred ChhHHHHH
Q psy4698 231 PADVLDVS 238 (258)
Q Consensus 231 ~~~~~~~~ 238 (258)
++....+.
T Consensus 141 ~~~~~~~~ 148 (440)
T 1yks_A 141 PGTSDEFP 148 (440)
T ss_dssp TTCCCSSC
T ss_pred Cchhhhhh
Confidence 88755443
No 71
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.76 E-value=3.1e-18 Score=151.56 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=95.1
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|+++++++|||||||++|++++++.+... +.+++|++|+++|+.|+++.++ +..+....+... ...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-----~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-----SER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-----ccC
Confidence 378999999999999999999999766543 3589999999999999888664 233333332211 111
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHh-CCCCccEEEEEeeCChhHH
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKH-LNNDVQVILLSATMPADVL 235 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~-l~~~~~~i~~SAT~~~~~~ 235 (258)
..+.-+.+.|.+.+...+.. ...++++++||+||+|++ +..+......+... .+.++|+++||||+++.+.
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 23356777888888766655 456889999999999986 33233333333322 2568999999999997644
No 72
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.76 E-value=2.8e-19 Score=165.63 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=102.3
Q ss_pred CCcHHHH-----HHhhhhh------cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 69 KPSAIQQ-----RAIIPCV------RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 69 ~~~~~Q~-----~~~~~l~------~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
.|+++|. .+++.++ .|+++++++|||||||++|+++++..+... +.+++|++|+++|+.|+++.++.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhc
Confidence 8999999 9999888 899999999999999999999999887653 46899999999999999987764
Q ss_pred hcCCCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 138 LGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
+. +.. .... .. .....+.-+-+.+.+.+...+... ..++++++||+||+|++ +..+...+..+...+
T Consensus 293 ~~----i~~---~~~~-l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 293 LP----VRY---LTPA-VQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRV 359 (673)
T ss_dssp SC----CEE---CCC-------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHH
T ss_pred CC----eee---eccc-cc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhc
Confidence 42 211 0000 00 000111223344444444433332 56889999999999987 222222222333333
Q ss_pred -CCCccEEEEEeeCChhHHHH
Q psy4698 218 -NNDVQVILLSATMPADVLDV 237 (258)
Q Consensus 218 -~~~~~~i~~SAT~~~~~~~~ 237 (258)
++++|+++||||++..+..+
T Consensus 360 ~~~~~~vl~~SAT~~~~i~~~ 380 (673)
T 2wv9_A 360 EAGEAAAIFMTATPPGTSDPF 380 (673)
T ss_dssp HTTSCEEEEECSSCTTCCCSS
T ss_pred cccCCcEEEEcCCCChhhhhh
Confidence 26789999999999875543
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=4.4e-17 Score=148.41 Aligned_cols=129 Identities=18% Similarity=0.076 Sum_probs=99.9
Q ss_pred CCcHHHHHHhhh----hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIP----CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~----l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.++++|.+++.. +..|+++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+.++.+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999997764 557899999999999999999999987 2458999999999999999999888776677
Q ss_pred eEEEEECCcch---------------------------------HHHH------------------HHHhcCCcEEEeCh
Q psy4698 145 SCHACIGGTIV---------------------------------RDDI------------------RKLEAGAQVVVGTP 173 (258)
Q Consensus 145 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~Ilv~Tp 173 (258)
++..+.|.... .... +.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 76665553210 0111 22234589999999
Q ss_pred HHHHHHHhcCCCCC-CCccEEEEccchhhhc
Q psy4698 174 GRVFDMISRGALST-KQIRMFVLDEADEMLS 203 (258)
Q Consensus 174 ~~l~~~l~~~~~~~-~~l~~lVvDE~h~~~~ 203 (258)
..|++...+..+.+ .+..++|+||||++.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99988765543433 4677999999999876
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.70 E-value=3.3e-17 Score=147.52 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=106.3
Q ss_pred CCcHHHHHHhhhh----hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPC----VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l----~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|+++|.++++.+ ..++++++..+||+|||++++..+. .+.......++||+|| .+|+.||.+.++++... .
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~--~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICP-LSVLKNWEEELSKFAPH--L 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTT--S
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--c
Confidence 6999999999876 4578899999999999999755444 4444444458999999 56889999999998753 4
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
.+..+.++... .....++|+|+|++.+..... +....+++||+||||++-+.. ......+..++ ..+.+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEE
Confidence 44455554421 112347999999998864432 223467899999999985443 33445555664 35789
Q ss_pred EEEeeCC
Q psy4698 225 LLSATMP 231 (258)
Q Consensus 225 ~~SAT~~ 231 (258)
++|||..
T Consensus 182 ~LTaTP~ 188 (500)
T 1z63_A 182 ALTGTPI 188 (500)
T ss_dssp EECSSCS
T ss_pred EEecCCC
Confidence 9999973
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.65 E-value=3.5e-16 Score=144.69 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=105.3
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI 159 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (258)
..++|++++++||||||||+. ++..+... .+++|++|+++|+.|+++.++.. +..+....|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~----al~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYH----AIQKYFSA---KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHH----HHHHHHHS---SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHHH----HHHHHHhc---CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 345788999999999999983 33444333 24699999999999999999876 4566666766543100
Q ss_pred HHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCC-CCccEEEEEeeCChhHHHHH
Q psy4698 160 RKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLN-NDVQVILLSATMPADVLDVS 238 (258)
Q Consensus 160 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~-~~~~~i~~SAT~~~~~~~~~ 238 (258)
......+++++|++.+. ....++++|+||+|++.+.+++..+..++..++ +..+++++|||.+ .++.+.
T Consensus 219 -TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~ 288 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELM 288 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHH
T ss_pred -CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHHH
Confidence 00112678888886532 246789999999999998899999999888887 6789999999953 355555
Q ss_pred HHhcCCCeEE
Q psy4698 239 MKFMRDPIKI 248 (258)
Q Consensus 239 ~~~~~~~~~v 248 (258)
... .+++.|
T Consensus 289 ~~~-~~~~~v 297 (677)
T 3rc3_A 289 YTT-GEEVEV 297 (677)
T ss_dssp HHH-TCCEEE
T ss_pred Hhc-CCceEE
Confidence 443 344443
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.8e-16 Score=145.51 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=112.7
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAIIPCV----RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.+++||.+++..+. .+++.++..+||+|||++++..+...+........+||||| .+++.||.+.+.+++. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 78999999998765 78899999999999999987776665555545557999999 7788999999999874 45
Q ss_pred eEEEEECCcchHHHHHHH------------hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHH
Q psy4698 145 SCHACIGGTIVRDDIRKL------------EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYD 212 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~------------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~ 212 (258)
.+..+.|....+...... ...++|+|+|++.+...... +....+++||+||||++-+ .......
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn--~~s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKN--AESSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCC--SSSHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcC--chhHHHH
Confidence 666666666554433322 23478999999998754322 1123578999999999833 3345555
Q ss_pred HHHhCCCCccEEEEEeeC
Q psy4698 213 VFKHLNNDVQVILLSATM 230 (258)
Q Consensus 213 ~~~~l~~~~~~i~~SAT~ 230 (258)
.+..++. ...+++|||.
T Consensus 389 ~l~~l~~-~~rl~LTgTP 405 (800)
T 3mwy_W 389 SLNSFKV-ANRMLITGTP 405 (800)
T ss_dssp HHTTSEE-EEEEEECSCC
T ss_pred HHHHhhh-ccEEEeeCCc
Confidence 6666643 4578899996
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.61 E-value=3.7e-16 Score=150.52 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=104.4
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVRG--NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
.|+++|.+++..+... .++++.++||+|||++++..+...+..+ ...+++|+||+ +|+.||...+.+.. +..+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 6899999999987764 4799999999999999977776655443 34589999999 99999999886654 3444
Q ss_pred EEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEEccchhhhccCcH-HHHHHHHHhC-CCCc
Q psy4698 147 HACIGGTIVRDDIR--KLEAGAQVVVGTPGRVFDMISR-GALSTKQIRMFVLDEADEMLSRGFK-DQIYDVFKHL-NNDV 221 (258)
Q Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~~~~~~~~-~~~~~~~~~l-~~~~ 221 (258)
..+.++........ ......+|+|+|++.+...... ..+...++++||+||+|++.+.+.. ......+..+ ....
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 44433322211100 1112479999999877532111 1123457889999999998644322 1112233333 2445
Q ss_pred cEEEEEeeCC
Q psy4698 222 QVILLSATMP 231 (258)
Q Consensus 222 ~~i~~SAT~~ 231 (258)
+++++|||.-
T Consensus 308 ~~L~LTATPi 317 (968)
T 3dmq_A 308 GVLLLTATPE 317 (968)
T ss_dssp SEEESCSSCS
T ss_pred cEEEEEcCCc
Confidence 7999999973
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.61 E-value=1e-14 Score=135.10 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=106.8
Q ss_pred CCcHHHHHHhhhhh---------cCCcEEEEcccCCCcchHhHHHHHHHhhhcc----ccceEEEEeccHHHHHHHHHHH
Q psy4698 69 KPSAIQQRAIIPCV---------RGNDVIAQAQSGTGKTATFSISILQQVDQNI----KECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~---------~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~----~~~~~lil~P~~~l~~q~~~~~ 135 (258)
.+++||.+++..+. .++.+++..+||+|||++++..+...+.... ...++||+||+ +++.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998863 4567999999999999998777666554331 12369999996 8899999999
Q ss_pred HHhcCCCCceEEEEECCcchHH--HHHHH-h-----cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcH
Q psy4698 136 IALGDFMSVSCHACIGGTIVRD--DIRKL-E-----AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFK 207 (258)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-----~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~ 207 (258)
.++... .+.+..+.++..... ..... . ..++|+|+|++.+.... ..+....+++||+||+|++-+. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~--~ 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS--D 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT--C
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh--h
Confidence 988654 344455555443221 11111 1 13789999999887543 2234457789999999987433 2
Q ss_pred HHHHHHHHhCCCCccEEEEEeeC
Q psy4698 208 DQIYDVFKHLNNDVQVILLSATM 230 (258)
Q Consensus 208 ~~~~~~~~~l~~~~~~i~~SAT~ 230 (258)
......+..++ ....+++|||.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSC
T ss_pred hHHHHHHHhcc-cCcEEEEecCc
Confidence 33444455554 35689999996
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=8.7e-16 Score=139.50 Aligned_cols=127 Identities=22% Similarity=0.227 Sum_probs=85.1
Q ss_pred CCCCCCcHHHHHHhh----hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 65 YGFEKPSAIQQRAII----PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~----~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.|+ .++++|.+++. ++..|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.++.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l~- 75 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLLG- 75 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGGT-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhcC-
Confidence 466 89999999865 45688999999999999999999998753 3589999999999999998887642
Q ss_pred CCCceEEEEECCcc---------h-----------------------HHHH---------------HHHhcCCcEEEeCh
Q psy4698 141 FMSVSCHACIGGTI---------V-----------------------RDDI---------------RKLEAGAQVVVGTP 173 (258)
Q Consensus 141 ~~~~~~~~~~~~~~---------~-----------------------~~~~---------------~~~~~~~~Ilv~Tp 173 (258)
+.+..+.|... . ...+ +.....++|+|+|+
T Consensus 76 ---~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 76 ---LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp ---CCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred ---CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 22222221110 0 0000 01123479999999
Q ss_pred HHHHHHHhcCCC-------CCCCccEEEEccchhhh
Q psy4698 174 GRVFDMISRGAL-------STKQIRMFVLDEADEML 202 (258)
Q Consensus 174 ~~l~~~l~~~~~-------~~~~l~~lVvDE~h~~~ 202 (258)
..+++-..++.+ .+.+..++|+||||++.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999874433221 24567899999999983
No 80
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.41 E-value=6.2e-13 Score=122.40 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=62.9
Q ss_pred CCcHHHHHHhh----hhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 69 KPSAIQQRAII----PCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 69 ~~~~~Q~~~~~----~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|++.|.+.+. .+..|+++++.+|||+|||++|++|++..+... +.+++|++||++++.|+.+.++.+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 58999998885 456899999999999999999999999987653 358999999999999999998887654344
Q ss_pred eEE
Q psy4698 145 SCH 147 (258)
Q Consensus 145 ~~~ 147 (258)
++.
T Consensus 81 ~~~ 83 (620)
T 4a15_A 81 RAI 83 (620)
T ss_dssp CEE
T ss_pred EEE
Confidence 433
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.22 E-value=1.4e-10 Score=106.45 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=102.1
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSV 144 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 144 (258)
.|. .|+++|....-.+.+|+ +..+.||+|||+++.+|++.....+ ..+.|++|+..||.+-+.++..+...+++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G---~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG---KGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC---CceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 466 89999999999999998 9999999999999999998665553 36999999999999999999999999999
Q ss_pred eEEEEECCc-------------------------------------------------chHHHHHHHhcCCcEEEeChHH
Q psy4698 145 SCHACIGGT-------------------------------------------------IVRDDIRKLEAGAQVVVGTPGR 175 (258)
Q Consensus 145 ~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~Ilv~Tp~~ 175 (258)
.+.+..... ......+.. -.|||.++|..-
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a-Y~~DItYgTn~E 224 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA-YLCDVTYGTNNE 224 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH-HHSSEEEEEHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH-hcCCCEEccCcc
Confidence 998877621 001111111 227999999887
Q ss_pred H-HHHHhcC------CCCCCCccEEEEccchhhh
Q psy4698 176 V-FDMISRG------ALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 176 l-~~~l~~~------~~~~~~l~~lVvDE~h~~~ 202 (258)
+ +++|+.+ ..-...+.+.||||+|.++
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 6 5566543 2234578899999999875
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.07 E-value=2.4e-10 Score=105.09 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred cHHHHHHhhhhhcCCcEEEEcccCCCcc--hHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 71 SAIQQRAIIPCVRGNDVIAQAQSGTGKT--ATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~~~li~~~tGsGKT--~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.+.|+.+++.++.++.+++.|++|+||| ++++++.+..+.. ..+.++++++||...+.+..+.+...+...++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 6899999999999999999999999999 4555666554422 234589999999999999887766543332221000
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
. .... .....+ ..++-.+|+.. .+.........+++|||||++++ + ...+..+++.++...|+|++.-
T Consensus 230 ~-~~~~--~~~~Ti---h~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 K-KRIP--EDASTL---HRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp C-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred H-hccc--hhhhhh---HhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcc
Confidence 0 0000 000000 11121222221 11122222237889999999954 3 4567788889988899999865
Q ss_pred e
Q psy4698 229 T 229 (258)
Q Consensus 229 T 229 (258)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 4
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.58 E-value=3.8e-07 Score=81.02 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCCCCCcHHHHHHhhhhhcC----C-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 65 YGFEKPSAIQQRAIIPCVRG----N-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 65 ~~~~~~~~~Q~~~~~~l~~g----~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
..+..+++-|++++..+... + .++|.|+.|+|||.+. ..++..+...+. .++++++||...+......+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~---- 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLS---- 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH----
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh----
Confidence 56788999999999876432 3 8999999999999765 445555544332 36999999988777665543
Q ss_pred CCCCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHH
Q psy4698 140 DFMSVSCHACIGGTIVRDDIRKLE----AGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFK 215 (258)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~ 215 (258)
+.....++ ... ... .....+.. .....+...++|||||++.+. ...+..+++
T Consensus 95 ---~~~~~T~h------~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~ 150 (459)
T 3upu_A 95 ---GKEASTIH------SIL-KINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILLS 150 (459)
T ss_dssp ---SSCEEEHH------HHH-TEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHH
T ss_pred ---ccchhhHH------HHh-ccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHHH
Confidence 11111100 000 000 00000000 112345578899999999652 334555666
Q ss_pred hCCCCccEEEEE
Q psy4698 216 HLNNDVQVILLS 227 (258)
Q Consensus 216 ~l~~~~~~i~~S 227 (258)
.++...+++++.
T Consensus 151 ~~~~~~~~~~vG 162 (459)
T 3upu_A 151 TIPPWCTIIGIG 162 (459)
T ss_dssp HSCTTCEEEEEE
T ss_pred hccCCCEEEEEC
Confidence 666566666654
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.53 E-value=8e-07 Score=81.00 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=81.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.+++.|.+++..+..++.++|.|+.|+|||.+. ..++..+... +.++++++||...+....+.. + ...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~---~----~~a-- 256 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL--GLEVGLCAPTGKAARRLGEVT---G----RTA-- 256 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT--TCCEEEEESSHHHHHHHHHHH---T----SCE--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc--CCeEEEecCcHHHHHHhHhhh---c----ccH--
Confidence 689999999999999999999999999999764 3444444433 357999999998887766533 1 110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHH----HhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEE
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDM----ISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~----l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i 224 (258)
.|..+++.. +..........++|||||++++. ...+..+++.++...++|
T Consensus 257 ----------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 257 ----------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp ----------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred ----------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 111111100 11112233467899999999762 446667788887777888
Q ss_pred EEEe
Q psy4698 225 LLSA 228 (258)
Q Consensus 225 ~~SA 228 (258)
++.-
T Consensus 311 lvGD 314 (574)
T 3e1s_A 311 LVGD 314 (574)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7643
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.53 E-value=2.3e-06 Score=78.93 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=54.5
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
..+++.|.+++..++.+..++|.||+|+|||.+..- ++..+... .+.++++++||...+.+....+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 467999999999988888899999999999987643 33333332 3458999999999999998877654
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.6e-06 Score=80.54 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=55.2
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
..+++.|.+|+..++.+..++|.||+|+|||.+..-.+. .+... .+.++++++||...+.+....+.+.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~-~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVY-HLSKI-HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHH-HHHHH-HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH-HHHhC-CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 457899999999988877899999999999987644333 33321 23589999999999999998887653
No 87
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.46 E-value=3.9e-07 Score=84.34 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=53.7
Q ss_pred CCcHHHHHHhhhhhcCC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 69 KPSAIQQRAIIPCVRGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.+++-|.+|+..++..+ -.+|.||+|+|||.+..-.+.+.+.. +.++|+++||..-++++...+...+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 57899999999887655 58999999999998865544444433 3489999999999999988876543
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.42 E-value=5.5e-06 Score=78.27 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
..+++.|.+|+..++.+..++|.||+|+|||.+.. .++..+... .+.++++++||...+.+....+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35789999999998888889999999999998754 333444332 3458999999999999988877654
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.74 E-value=0.00074 Score=58.26 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=55.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.++++|...+..+...+-+++..+-+.|||.+....++..+.. ..+.+++++.|+...+...++.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999999877555668999999999998776655554333 2345799999999999888877776543
No 90
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.61 E-value=0.00033 Score=61.32 Aligned_cols=85 Identities=25% Similarity=0.294 Sum_probs=54.5
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (258)
+-.++.|+.|+|||.... +.+.. .+.+|++|+++++.++.+.+...+. ..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~----------------------~~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGI----------------------IV 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSC----------------------CC
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCc----------------------cc
Confidence 347899999999998642 22221 3689999999999998886632210 01
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 165 ~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
....-|.|.++++ ++......-..+++||||+-.+
T Consensus 212 ~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 212 ATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp CCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGGS
T ss_pred cccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcccC
Confidence 1233467777644 2332222235789999999844
No 91
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.56 E-value=0.00022 Score=55.51 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=27.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.|+-.++.|++|||||+..+-.+.. +.. .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r-~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRR-AKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH-HHH--TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH-HHH--CCCEEEEEEecc
Confidence 4556899999999999886544433 332 345799998874
No 92
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.56 E-value=0.00039 Score=63.58 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=76.2
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCC--ceE
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMS--VSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 146 (258)
.++++|...+..+...+..++.++-|+|||.+....++..+... .+.+++++.|+...+...+..++.+..... +..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 57999999998775567789999999999987765555444433 345899999999999998888877655432 110
Q ss_pred -EEEECCcchHHHHHHHhcCCcEEEeC--hHHHHHHHhcCCCCCCCccEEEEccchhhh
Q psy4698 147 -HACIGGTIVRDDIRKLEAGAQVVVGT--PGRVFDMISRGALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~Ilv~T--p~~l~~~l~~~~~~~~~l~~lVvDE~h~~~ 202 (258)
......... ...+|..|.+.+ |+.+. . .+.+++|+||+|.+-
T Consensus 242 ~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lr----G-----~~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 242 GIVEWNKGSI-----ELDNGSSIGAYASSPDAVR----G-----NSFAMIYIEDCAFIP 286 (592)
T ss_dssp CEEEECSSEE-----EETTSCEEEEEECCHHHHH----H-----SCCSEEEEETGGGCT
T ss_pred ccccCCccEE-----EecCCCEEEEEeCCCCCcc----C-----CCcceEEEehhccCC
Confidence 000111111 123455555443 43322 1 135689999999763
No 93
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.53 E-value=0.00023 Score=65.60 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+... ....+++++++|+..+.+..+.+....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 356799999999999998776666666543 234589999999999999998887753
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=0.00023 Score=54.99 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=26.8
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
|+-.++.|++|+|||+.++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 5567899999999999865444333222 34788888874
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.51 E-value=0.00063 Score=51.99 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.8
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999865
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.43 E-value=0.00028 Score=56.32 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=52.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|.-.++.|++|+|||+..+..+...... +.+++++.|...-. ....+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r-----~~~~i~srlG~~~---------------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR-----SIRNIQSRTGTSL---------------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG-----GCSSCCCCCCCSS----------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch-----HHHHHHHhcCCCc----------------
Confidence 35568899999999998875544443322 34788887754210 0001111111110
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhh
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEM 201 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~ 201 (258)
..+-+.+.+.++..+.... .-...++|||||++.+
T Consensus 67 ---~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ---PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ---CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ---cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1234556667777665432 2245789999999965
No 97
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.33 E-value=0.00066 Score=62.91 Aligned_cols=69 Identities=33% Similarity=0.384 Sum_probs=52.4
Q ss_pred CCCCCcHHHHHHhhhhhc----CC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 66 GFEKPSAIQQRAIIPCVR----GN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~----g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
++ .|+..|..++..+.. |. ..++.|.||||||+++.- ++... +..+||++|+..++.|++..++.+..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL-----GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-----CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 45 899999888876543 32 467889999999987632 22222 12599999999999999999999864
Q ss_pred C
Q psy4698 141 F 141 (258)
Q Consensus 141 ~ 141 (258)
.
T Consensus 79 ~ 79 (664)
T 1c4o_A 79 E 79 (664)
T ss_dssp T
T ss_pred C
Confidence 3
No 98
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.28 E-value=0.00057 Score=53.92 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=27.6
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
|+-.++.|++|+|||+.++-.+...... +.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 4556789999999998875555444332 347999998764
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.28 E-value=0.0022 Score=53.75 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+..+++.||+|+|||..+- .+...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEE
Confidence 4679999999999998753 333333322 23466654
No 100
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.28 E-value=0.00056 Score=63.47 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.+++-|++++.. .+.+++|.|+.|||||.+..--+...+... ....++++++.|+..+.+..+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999975 356799999999999998776666666552 244589999999999999998887764
No 101
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.27 E-value=0.004 Score=48.45 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
..-.+||+||+|.+.. .....+..++...+....+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTA-DAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCH-HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4556999999998743 2345566666666566666655443
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00022 Score=53.16 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=17.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+.+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6888999999999999864
No 103
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.22 E-value=0.001 Score=53.01 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=28.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.|+-.++.|++|||||...+-.+..... .+.+++++.|.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecC
Confidence 4556789999999999887655544433 345799998865
No 104
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.22 E-value=0.00062 Score=67.42 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhcc---ccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 69 KPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNI---KECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
.+++-|.+++..- +++++|.|+.|||||.+.+--++..+.... ...+++++++|+..+....+++...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6899999999654 889999999999999998877887777643 3458999999999999998887663
No 105
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00064 Score=57.14 Aligned_cols=26 Identities=4% Similarity=0.004 Sum_probs=19.5
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
+.++++.||+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999876 34444443
No 106
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.18 E-value=0.0012 Score=52.03 Aligned_cols=99 Identities=6% Similarity=0.038 Sum_probs=51.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
.|.-.++.|++|+|||...+..+ .++... +.+++++.|...-... -..+.+..+....
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~--g~kvli~kp~~D~R~~----~~~I~Sr~G~~~~--------------- 84 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYA--KQKVVVFKPAIDDRYH----KEKVVSHNGNAIE--------------- 84 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHT--TCCEEEEEEC---------------CBTTBCCE---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHc--CCceEEEEeccCCcch----hhhHHHhcCCcee---------------
Confidence 45567999999999998765554 333332 3478999887542111 1112222222211
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHH
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVF 214 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~ 214 (258)
-+.|..+..++..+ ..+.++|+||||+.+ +......+..+.
T Consensus 85 ----a~~v~~~~di~~~i------~~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 85 ----AINISKASEIMTHD------LTNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp ----EEEESSGGGGGGSC------CTTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred ----eEEeCCHHHHHHHH------hcCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 23344444333222 146789999999965 333444444444
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.12 E-value=0.0013 Score=61.67 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHhHHHHHHHhhhc-cccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 68 EKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQN-IKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 68 ~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
..+++-|++++.+ .+.+++|.|+.|||||.+..--+...+... ....++++++.|+..+.+..+++..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999976 356789999999999998776666666543 24458999999999999998887765
No 108
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.06 E-value=0.0043 Score=54.55 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+.++++.||+|+|||..+- .+...+.....+.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH
Confidence 3579999999999998653 33333433322345666543
No 109
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.0025 Score=54.41 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.3
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+.++++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999875
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.96 E-value=0.0018 Score=54.74 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=23.8
Q ss_pred cHHHHHHhhhh----hcCC---cEEEEcccCCCcchHhHHH
Q psy4698 71 SAIQQRAIIPC----VRGN---DVIAQAQSGTGKTATFSIS 104 (258)
Q Consensus 71 ~~~Q~~~~~~l----~~g~---~~li~~~tGsGKT~~~l~~ 104 (258)
.|+|.+++..+ ..|+ .+++.||.|+|||..+...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 56666666544 3443 3899999999999876433
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.0038 Score=53.37 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.6
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999875
No 112
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.88 E-value=0.005 Score=51.28 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=25.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+-.++|+||+|.+... ....+...+...+..+.+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999987432 3445556666655666666544
No 113
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=0.0062 Score=44.74 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=24.2
Q ss_pred cEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 191 RMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
+.+++||+|.+.. .....+...+...+.+.++|+.|..
T Consensus 78 g~l~ldei~~l~~-~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCH-HHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCH-HHHHHHHHHHhhcCCCEEEEEECCc
Confidence 3799999998743 3445555666555556766665443
No 114
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.84 E-value=0.0033 Score=48.80 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=27.5
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|+=.++.|++|||||.-.+..+-+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 35568999999999997655554443333 2479999886
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.83 E-value=0.024 Score=46.05 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.6
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.++++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998753
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.80 E-value=0.0055 Score=53.63 Aligned_cols=132 Identities=14% Similarity=0.241 Sum_probs=72.5
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA--PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL 162 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
..+++.|++|+|||+....-+. .+.. .+.+++++. +.+.-+.++ +..++...++.+.......
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~-~l~~--~G~kVllv~~D~~r~~a~eq---L~~~~~~~gv~~~~~~~~~--------- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAY-FYKK--RGYKVGLVAADVYRPAAYDQ---LLQLGNQIGVQVYGEPNNQ--------- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHH-HHHH--TTCCEEEEEECCSCHHHHHH---HHHHHHTTTCCEECCTTCS---------
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEEecCccchhHHHH---HHHHHHhcCCceeeccccC---------
Confidence 3588999999999987643332 2222 234676665 334333222 2223333333332211111
Q ss_pred hcCCcEEEeChHHHH-HHHhcCCCCCCCccEEEEccchhhh---ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHH
Q psy4698 163 EAGAQVVVGTPGRVF-DMISRGALSTKQIRMFVLDEADEML---SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVS 238 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~-~~l~~~~~~~~~l~~lVvDE~h~~~---~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~ 238 (258)
.|..+. ..+.. ....+.+++|+|++-++. +......+..+.+.+.++.-++.++|+...+..+.+
T Consensus 163 ---------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 163 ---------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp ---------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred ---------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 122211 22222 122467899999998643 233556677777777777777888888766666666
Q ss_pred HHhc
Q psy4698 239 MKFM 242 (258)
Q Consensus 239 ~~~~ 242 (258)
+.|.
T Consensus 232 ~~f~ 235 (433)
T 3kl4_A 232 SRFH 235 (433)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
No 117
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.76 E-value=0.0024 Score=50.63 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=16.5
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+.++++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999865
No 118
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.0085 Score=50.51 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
....+|++||+|.+... ....+...+...+...++|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 34579999999987432 34556666666666666666543
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.0018 Score=47.56 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
...+.++++.|++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999764
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0071 Score=51.16 Aligned_cols=43 Identities=12% Similarity=0.434 Sum_probs=30.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCC
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMP 231 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~ 231 (258)
.+.+++|+||+|. ++......+...+...+.+..+|+.|....
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 3567999999998 455556677777777766666666665544
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.62 E-value=0.0049 Score=56.69 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCcHHHHHHhhhhhc--CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 69 KPSAIQQRAIIPCVR--GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~~--g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+.+- .+. .+++|.+|+..-+...++...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~-----~~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA-----GRAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS-----SCEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH-----hCcEEECCCHHHHHHHHHHhhC---------
Confidence 578899999988765 23489999999999965433333 332 1468999998766654443210
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEE
Q psy4698 147 HACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILL 226 (258)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~ 226 (258)
.|=+..|+.+. . ...+.+++|||||=.+ -...+..++. ....++|
T Consensus 240 --------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaI----p~pll~~ll~----~~~~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAI----PAPLLHQLVS----RFPRTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGS----CHHHHHHHHT----TSSEEEE
T ss_pred --------------------CeEEeCchhhh---h----CcccCCEEEEEchhcC----CHHHHHHHHh----hCCeEEE
Confidence 13344675533 1 2345889999999876 2344444444 3346778
Q ss_pred EeeCCh
Q psy4698 227 SATMPA 232 (258)
Q Consensus 227 SAT~~~ 232 (258)
|-|+..
T Consensus 285 ~tTv~G 290 (671)
T 2zpa_A 285 TTTVQG 290 (671)
T ss_dssp EEEBSS
T ss_pred EecCCc
Confidence 888754
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.61 E-value=0.0072 Score=50.50 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998653
No 123
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.54 E-value=0.011 Score=54.80 Aligned_cols=67 Identities=28% Similarity=0.329 Sum_probs=50.6
Q ss_pred CCcHHHHHHhhhhh----cCC-cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCC
Q psy4698 69 KPSAIQQRAIIPCV----RGN-DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDF 141 (258)
Q Consensus 69 ~~~~~Q~~~~~~l~----~g~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 141 (258)
.|+..|..++..+. .|. ...+.|.||||||+++.- ++... +..+||++|+..++.|++..++.+...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 78899988887654 343 467889999999987532 22222 125999999999999999999998643
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.54 E-value=0.0019 Score=53.64 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.6
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999876
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.53 E-value=0.0025 Score=53.40 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=27.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
+.+++++||+|.+........+...+...+.++++|+.+..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 67799999999875233455566666665566766664443
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.52 E-value=0.0039 Score=53.29 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=21.8
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
.+++.||+|+|||...- .+...+.... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhc-CeeEEEEe
Confidence 79999999999998753 3333333221 23455554
No 127
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.018 Score=48.86 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=23.2
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccc-cceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIK-ECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~-~~~~lil~ 122 (258)
+..+++.|++|+|||...- .+...+..... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~-~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK-FVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH-HHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHHhcCCceEEEEE
Confidence 4679999999999998753 23333333211 33455554
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.013 Score=47.87 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=29.7
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh--hhcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIP--CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~--l~~g~~~li~~~tGsGKT~~~ 101 (258)
..|+++.-.+..++.+...-. .+ -...+.+.. +..++++++.||+|+|||..+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356666655666665543210 00 001111111 234577999999999999865
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.45 E-value=0.053 Score=42.40 Aligned_cols=39 Identities=13% Similarity=0.351 Sum_probs=23.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
.-.+||+||+|.+. ......+...+...+....+|+.|.
T Consensus 126 ~~~vlviDe~~~l~-~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSC-HHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECccccc-HHHHHHHHHHHhcCCCceEEEEEeC
Confidence 34689999999863 2234445555554444555555443
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.40 E-value=0.026 Score=43.60 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=15.4
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999865
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.014 Score=48.46 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=25.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
.-.+||+||+|.+... ....+...+...+..+.+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeC
Confidence 3679999999987432 23445556666556666666553
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.19 E-value=0.17 Score=37.84 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.6
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
..++++.|++|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999875
No 133
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.048 Score=45.90 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=26.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+.+++|+||+|.+.. .....+...+...+..+.+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999998743 24455666677666666666544
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.039 Score=43.79 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=32.4
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
..|..+++.|++|+|||...+..+...+.. +.+++|+.-... ..+....+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC-HHHHHHHHHH
Confidence 456779999999999998765444444332 236787774332 3444444443
No 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.99 E-value=0.012 Score=48.88 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=29.6
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhh-hhhcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAII-PCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~-~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..|+++.-...+++.+...-. .+..+...... .+..++.+++.||+|+|||..+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 457777655566655543200 00000001111 1235678999999999999875
No 136
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.98 E-value=0.029 Score=42.21 Aligned_cols=19 Identities=37% Similarity=0.477 Sum_probs=16.0
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999998753
No 137
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.97 E-value=0.019 Score=50.42 Aligned_cols=140 Identities=19% Similarity=0.150 Sum_probs=67.9
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHH-
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRK- 161 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 161 (258)
.|.-++|.|++|+|||...+..+....... +.+++|++..- -..++..++.......+..- +..+.-...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~--l~~g~l~~~~~~~~ 273 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEM-PAAQLTLRMMCSEARIDMNR--VRLGQLTDRDFSRL 273 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSS-CHHHHHHHHHHHHTTCCTTT--CCGGGCCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCC-CHHHHHHHHHHHHcCCCHHH--HhCCCCCHHHHHHH
Confidence 445699999999999987665555444322 33688876432 22344433322111111100 0011111122211
Q ss_pred ------HhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEEccchhhhcc-------CcHHHHHHHHHhCC-----
Q psy4698 162 ------LEAGAQVVVG-----TPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-------GFKDQIYDVFKHLN----- 218 (258)
Q Consensus 162 ------~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~-------~~~~~~~~~~~~l~----- 218 (258)
+.. ..+.+. |++.+...+.+-. .-.++++||||..+.+... +....+..+++.+.
T Consensus 274 ~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke 351 (444)
T 2q6t_A 274 VDVASRLSE-APIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARE 351 (444)
T ss_dssp HHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 222 356653 3444444333200 0125789999999987643 12233444444332
Q ss_pred CCccEEEEEee
Q psy4698 219 NDVQVILLSAT 229 (258)
Q Consensus 219 ~~~~~i~~SAT 229 (258)
.++.+|++|..
T Consensus 352 ~~v~vi~lsql 362 (444)
T 2q6t_A 352 LGIPIIALSQL 362 (444)
T ss_dssp HTSCEEEEEEC
T ss_pred hCCeEEEEecC
Confidence 25667777653
No 138
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.95 E-value=0.017 Score=47.86 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=14.5
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999865
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.93 E-value=0.049 Score=47.92 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=28.3
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
+..|.-++|.|++|+|||...+..+....... +.+++|+...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 34456799999999999987655554444332 2368887743
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.85 E-value=0.044 Score=42.93 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=25.3
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+..|..+++.|++|+|||......+...... +.+++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 3456779999999999997654333222222 235777663
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.75 E-value=0.17 Score=44.37 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=31.2
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe--ccHHHHHHHHHHHHHhcCCCCceE
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA--PTRELAQQIQKVVIALGDFMSVSC 146 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~ 146 (258)
..+++.|++|+|||++..--+ ..+.. .+.+++++. +.+.-+.+ .++.++...++.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~--~G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv 158 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK--RGYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT--TTCCEEEEECCCSSTHHHH---HHHHHHGGGTCEE
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH--CCCeEEEEeCCCcchhHHH---HHHHHHHhcCCcE
Confidence 358999999999998764333 22333 234676666 44443333 2333344444444
No 142
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.65 E-value=0.037 Score=42.87 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=71.6
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH-HHHHHHHHHHHhcCCCCceEEEEECCcchHH-HHHHH
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE-LAQQIQKVVIALGDFMSVSCHACIGGTIVRD-DIRKL 162 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 162 (258)
..+++.+++|.|||.+++--++..+..+ .+++|+.=.+. ....-...++++ ++.+..+-.+-.... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHHH
Confidence 4689999999999999877776666543 47888843221 000001122222 122222111111000 00000
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccC--cHHHHHHHHHhCCCCccEEEEEeeCChhHHHHH
Q psy4698 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRG--FKDQIYDVFKHLNNDVQVILLSATMPADVLDVS 238 (258)
Q Consensus 163 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~--~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~ 238 (258)
.. .....+..... .+.-..+++||+||+-..+..+ -...+..++...+...-+|+.+--.|.++.+.+
T Consensus 102 ~~-------~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 102 TA-------ACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp HH-------HHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred HH-------HHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 00 00111222221 1223568999999997654443 346677778776666666666666677766654
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.65 E-value=0.0047 Score=52.29 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.2
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+..|.-+++.|++|+|||..++-.+..... .+..++|++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 345567999999999999877655554444 2346888774
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.09 Score=45.43 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=32.2
Q ss_pred ccCcCCCCCCHHHHHHHHHCC---CCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 46 AENFDDMELSEELLRGIYAYG---FEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~---~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+|++.+=-...++.+++.= +..|--++..- +...+.+++.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 357888875566666665421 11222222222 223467999999999999865
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.57 E-value=0.059 Score=44.82 Aligned_cols=50 Identities=6% Similarity=0.080 Sum_probs=29.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHH
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
.+.+++|+||+|.|... ..+.+.+.+..-++.+.+|+. ++-+..+...++
T Consensus 81 ~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~-t~~~~kl~~tI~ 130 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLN-TRRWHYLLPTIK 130 (305)
T ss_dssp SSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEE-ESCGGGSCHHHH
T ss_pred CCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEE-ECChHhChHHHH
Confidence 46789999999987433 334455566654455545544 444444443333
No 146
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.053 Score=47.40 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=34.7
Q ss_pred cccCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 45 VAENFDDMELSEELLRGIYAY---GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..+|++.+-....++.+.+. -+.+|.-++..-+ ...+.+++.||+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 345788888777777776542 1223333333222 23467999999999999865
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.39 E-value=0.032 Score=49.97 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=26.3
Q ss_pred CccEEEEccchhhhccC--cHHHHHHHHHhCCCCccEEEEEeeCC
Q psy4698 189 QIRMFVLDEADEMLSRG--FKDQIYDVFKHLNNDVQVILLSATMP 231 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~--~~~~~~~~~~~l~~~~~~i~~SAT~~ 231 (258)
.-.+|++||+|.+.... ....+..++.. ...++|+.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 45689999999886432 23455555554 3456788777653
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.36 E-value=0.066 Score=45.30 Aligned_cols=39 Identities=10% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+-.++|+||+|.+... ....+...+...+..+.+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 34579999999987432 3445555565554555455544
No 149
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.30 E-value=0.019 Score=49.41 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.9
Q ss_pred CcEEE--EcccCCCcchHhH
Q psy4698 85 NDVIA--QAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li--~~~tGsGKT~~~l 102 (258)
..++| .|+.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46888 8999999998753
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.30 E-value=0.092 Score=43.83 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=29.6
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhh-----hcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPC-----VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l-----~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.++.-...+++.+...-. .+ ...+.+ ...+++++.||+|+|||..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457777666667766654210 01 011111 12357999999999999875
No 151
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.30 E-value=0.083 Score=42.29 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.1
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
..+.+++.||+|+|||..+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999865
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.26 E-value=0.065 Score=44.86 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.3
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999875
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.25 E-value=0.023 Score=46.84 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=26.4
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+..|.-+++.|++|+|||......+...... .+.+++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 5567789999999999998764433332222 1225767653
No 154
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.19 E-value=0.079 Score=45.50 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.0
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999875
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.15 Score=44.43 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=31.3
Q ss_pred ccCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 46 AENFDDMELSEELLRGIYAY---GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~---~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+|.+.+=-..+++.+.+. .+..|--++..- +...+.+++.||+|+|||+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 35788887555666555432 111222222211 223467999999999999875
No 156
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.12 E-value=0.064 Score=44.77 Aligned_cols=51 Identities=20% Similarity=0.044 Sum_probs=32.5
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 135 (258)
+..|.-++|.|++|+|||...+..+.....++ .+++|++-. .-..++..++
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~ 115 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRL 115 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHH
Confidence 34556799999999999987665555544332 468888743 2334444444
No 157
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.97 E-value=0.12 Score=40.80 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=27.2
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P 123 (258)
+..|.-+++.||+|+|||......+...+... +.+..++++.-
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 34567799999999999987655444322211 11335777764
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.62 E-value=0.094 Score=46.64 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=27.2
Q ss_pred cEEEEccchhhhccC----------cHHHHHHHHHhCCCCccEEEEEeeCCh
Q psy4698 191 RMFVLDEADEMLSRG----------FKDQIYDVFKHLNNDVQVILLSATMPA 232 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~----------~~~~~~~~~~~l~~~~~~i~~SAT~~~ 232 (258)
.+|++||+|.+.... ....+...+..+.....++++.||-..
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999886421 224455556655556667777777543
No 159
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.034 Score=48.92 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=32.9
Q ss_pred ccCcCCCCCCHHHHHHHHHCC---CCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 46 AENFDDMELSEELLRGIYAYG---FEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~---~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+|.+.+=-..+++.|++.= +..|-.++..- +...+.+++.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 357888876677777776531 11221122111 234478999999999999865
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.57 E-value=0.085 Score=43.74 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.7
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
..++++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999865
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.49 E-value=0.053 Score=47.68 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.1
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999875
No 162
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.34 E-value=0.04 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=19.5
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~ 105 (258)
+..|.-+.+.||+|+|||+.....+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4567789999999999998654333
No 163
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.13 E-value=0.059 Score=47.33 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=28.4
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
..|.-++|.|++|+|||...+-.+.+.... +.+++|++-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 345669999999999998876666655544 346888874
No 164
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.87 E-value=0.5 Score=38.34 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.1
Q ss_pred hhhcCCcEEEEcccCCCcchHhHHHHH
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATFSISIL 106 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~l~~~l 106 (258)
-+..|.-++|.|++|+|||+.....+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356778899999999999987654443
No 165
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.81 E-value=0.83 Score=33.70 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=52.6
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLEA-GAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+......+... +..+..++++....+.. ..... ..+|+|+|. .+ ..++++++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~ 103 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIEN 103 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhc
Confidence 3458999999999999999988775 46677788876544322 22333 478999993 22 23567888
Q ss_pred ccEEEEccc
Q psy4698 190 IRMFVLDEA 198 (258)
Q Consensus 190 l~~lVvDE~ 198 (258)
++++|.-+.
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 988887554
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.55 E-value=0.12 Score=45.69 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.1
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999875
No 167
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.96 E-value=1.4 Score=32.51 Aligned_cols=75 Identities=11% Similarity=0.221 Sum_probs=51.9
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.++++..+......++.. +..+..++++....+.. .... ...+|+|+|. .+ ..++++++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~ 98 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQ 98 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCccc
Confidence 3458999999999999999888765 45677777776544322 2223 3478999994 22 23467888
Q ss_pred ccEEEEccc
Q psy4698 190 IRMFVLDEA 198 (258)
Q Consensus 190 l~~lVvDE~ 198 (258)
++++|.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888877543
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.85 E-value=0.45 Score=41.07 Aligned_cols=40 Identities=13% Similarity=-0.068 Sum_probs=26.1
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEecc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPT 124 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~ 124 (258)
.-+.|.|+.|+|||......++..+... +.+.+++|+.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 5689999999999987654444433321 133468887643
No 169
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.75 E-value=1.1 Score=34.68 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=50.8
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLEA-GAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++.-+......+... ++.+..++|+....+.. ....+ ..+|+|+|. .+ ..++++++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~ 99 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQ 99 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCcc
Confidence 3458999999999999999888776 46677788876554332 23333 378999993 22 34567788
Q ss_pred ccEEEE
Q psy4698 190 IRMFVL 195 (258)
Q Consensus 190 l~~lVv 195 (258)
++++|.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888774
No 170
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.73 E-value=0.99 Score=33.68 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=51.7
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLEA-GAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+......+... +..+..++|+....+.. ....+ ..+|+|+|. .+ ..++++++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCccc
Confidence 4458999999999999998887664 46677778876544332 22333 489999994 22 34567888
Q ss_pred ccEEEEcc
Q psy4698 190 IRMFVLDE 197 (258)
Q Consensus 190 l~~lVvDE 197 (258)
++++|.=+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 98888533
No 171
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.64 E-value=0.14 Score=46.07 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.7
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999865
No 172
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.63 E-value=1.1 Score=36.80 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=22.2
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
.++.+.+.|+.|+|||+....-+.. +.. .+.+++++-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~-~~~--~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-YKG--KGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH-HHH--TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH--cCCeEEEec
Confidence 3456788899999999765332222 222 233566665
No 173
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.56 E-value=0.23 Score=42.37 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=26.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|.-++|.|++|+|||...+..+...... +.+++|+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 34679999999999998765544443332 2368888754
No 174
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.38 E-value=0.39 Score=39.65 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.0
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
++.+++.|++|+|||+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999998754
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.28 E-value=0.12 Score=53.36 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=29.8
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
.++++++.||+|+|||..+...+..... ++.+++|+.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 3678999999999999887655554433 3447888886543
No 176
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.14 E-value=1.5 Score=36.66 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=29.8
Q ss_pred ccEEEEccchhhh-ccCcHHHHHHHHHhCCCCccEEEEEeeCChhHHHHHHHhc
Q psy4698 190 IRMFVLDEADEML-SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFM 242 (258)
Q Consensus 190 l~~lVvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~~~~~~~~~ 242 (258)
.+++++|.+-... +......+..+.+.+.++..++.+.++...++.+.++.|.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 3456667665432 2234445555555555566666777776666666666554
No 177
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.11 E-value=0.23 Score=47.34 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.6
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.++++.||+|+|||..+-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999998653
No 178
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.02 E-value=0.15 Score=38.94 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=72.1
Q ss_pred cHHHHHHhhhhhcCC--cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEE
Q psy4698 71 SAIQQRAIIPCVRGN--DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHA 148 (258)
Q Consensus 71 ~~~Q~~~~~~l~~g~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 148 (258)
.+-|..++..+.... -.+|.+.-|++|+...+..++..... .|.++.+++|+........+.. +..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~l~~~~-------~l~--- 103 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMNMKQDE-------RLS--- 103 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHHHSCTT-------TCS---
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHHHHhhc-------CcC---
Confidence 356888888876554 58889999999998865555444444 3458999999977665544321 110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEEccchhhhccCcHHHHHHHHHhC-CCCccEEEEE
Q psy4698 149 CIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL-NNDVQVILLS 227 (258)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~i~~S 227 (258)
+ +++ |- ..+......+..=+++|||||..+. ..++..++..- ..+.|+|++-
T Consensus 104 ----------------~-~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naqvvll~ 156 (189)
T 2l8b_A 104 ----------------G-ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQVLITD 156 (189)
T ss_dssp ----------------S-CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred ----------------c-cee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCEEEEeC
Confidence 0 011 11 1122233333444589999999873 44555555443 3457888775
Q ss_pred ee
Q psy4698 228 AT 229 (258)
Q Consensus 228 AT 229 (258)
-+
T Consensus 157 ~~ 158 (189)
T 2l8b_A 157 SG 158 (189)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 179
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.02 E-value=0.52 Score=44.18 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.7
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
++++.||+|+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999876
No 180
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.95 E-value=0.62 Score=41.26 Aligned_cols=52 Identities=12% Similarity=0.251 Sum_probs=39.6
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcC
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 140 (258)
.|....+.|-+|||||++..- +... .+..+|||+|+...+.+++..++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-----l~~~-~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-----IAER-HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-----HHHH-SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-----HHHH-hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456789999999999986421 1111 123599999999999999999998864
No 181
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.80 E-value=1.3 Score=33.03 Aligned_cols=75 Identities=8% Similarity=0.128 Sum_probs=52.1
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+......+... +..+..++++....+.. .... ...+|+|+|.- -..++++++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~ 99 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIER 99 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhh
Confidence 3458999999999999999988775 46677778776544322 2233 34899999941 223567778
Q ss_pred ccEEEEccc
Q psy4698 190 IRMFVLDEA 198 (258)
Q Consensus 190 l~~lVvDE~ 198 (258)
++++|.-+.
T Consensus 100 ~~~Vi~~d~ 108 (172)
T 1t5i_A 100 VNIAFNYDM 108 (172)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEECC
Confidence 888876444
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.66 E-value=0.25 Score=46.59 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.3
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999865
No 183
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.44 E-value=0.22 Score=41.71 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=52.0
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHhcC
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
-+.|.||.|+|||...+..+...... +.+.+++|+....++... .+++++-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~---ra~~lGvd~d---------------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA---YLRSMGVDPE---------------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH---HHHHTTCCGG----------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH---HHHHhCCCHH----------------------
Confidence 58999999999998876655554432 224579998865544322 3445542211
Q ss_pred CcEEEeCh---HHH-HHHHhc-CCCCCCCccEEEEccchhhh
Q psy4698 166 AQVVVGTP---GRV-FDMISR-GALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 166 ~~Ilv~Tp---~~l-~~~l~~-~~~~~~~l~~lVvDE~h~~~ 202 (258)
++++..| +.+ +.++.. ..+.-..+++||||-+..+.
T Consensus 84 -~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2344433 333 322211 11233467899999999775
No 184
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.42 E-value=0.15 Score=45.65 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHCCCCCCcHHHHHHhh-hhhcCCcEEEEcccCCCcchHh
Q psy4698 61 GIYAYGFEKPSAIQQRAII-PCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 61 ~l~~~~~~~~~~~Q~~~~~-~l~~g~~~li~~~tGsGKT~~~ 101 (258)
.|.+.|. +.+.+...+. .+..|.++++.||||||||+..
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3444452 3333333333 3567889999999999999864
No 185
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.41 E-value=0.14 Score=41.45 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|..+++.||||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 457778999999999999864
No 186
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.37 E-value=0.24 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=27.0
Q ss_pred CcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 70 PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
-+.-|..++..+..|.-+.+.||.|+|||+..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34557778888899999999999999999864
No 187
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.32 E-value=0.7 Score=43.70 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.0
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..++.+++.||+|+|||+.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 45678999999999999865
No 188
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.04 E-value=0.6 Score=43.71 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.3
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
+.++++.|++|+|||..+-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999998753
No 189
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.71 E-value=0.23 Score=43.15 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=19.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHh
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQV 109 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l 109 (258)
...+++|.|+||||||... ..++..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHH
Confidence 4578999999999999975 3334333
No 190
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.58 E-value=0.17 Score=43.26 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|..+++.||||||||+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 456778999999999999864
No 191
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.41 E-value=0.23 Score=39.23 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIA 137 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 137 (258)
.|.-+++.|++|+|||...+-.+.+.+...+ ..++|++-. ....+....+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeeccc-CCHHHHHHHHHH
Confidence 3466999999999999876655554444332 257777633 223444444433
No 192
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.21 E-value=1.6 Score=32.95 Aligned_cols=74 Identities=15% Similarity=0.324 Sum_probs=44.4
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHH---HHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRD---DIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+......++.. ++.+..++|+....+ ...... ...+|+|+|. .+. .++++++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCccc
Confidence 4568999999999999999888775 456666776654332 222223 3478999993 222 3457778
Q ss_pred ccEEEEcc
Q psy4698 190 IRMFVLDE 197 (258)
Q Consensus 190 l~~lVvDE 197 (258)
++++|.=+
T Consensus 115 ~~~VI~~d 122 (185)
T 2jgn_A 115 VKHVINFD 122 (185)
T ss_dssp BSEEEESS
T ss_pred CCEEEEeC
Confidence 88877643
No 193
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.05 E-value=0.21 Score=49.30 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=31.9
Q ss_pred EEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHH
Q psy4698 88 IAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELA 128 (258)
Q Consensus 88 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~ 128 (258)
+|.|+.|||||.+.+--+...+.....+.++++++|....-
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TF 45 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTF 45 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHH
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccH
Confidence 78889999999998777777776654456899999976533
No 194
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.00 E-value=0.22 Score=42.30 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.3
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..+..++|.||||||||+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34557999999999999864
No 195
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.90 E-value=0.11 Score=51.79 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=30.1
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
+-+++|+||+=.-+|......+...++...+++.+|..+-
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3468999999887787777888888887767665555543
No 196
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.78 E-value=5.3 Score=30.25 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=51.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCCcc
Q psy4698 116 CQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQIR 191 (258)
Q Consensus 116 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~ 191 (258)
.++||.|+++..+......++.. ++.+..++|+....+.. .... ...+|+|+|. .+.+ ++++++++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCcccCC
Confidence 47999999999999999988776 46677778876544322 2222 3489999993 3333 46788888
Q ss_pred EEEEcc
Q psy4698 192 MFVLDE 197 (258)
Q Consensus 192 ~lVvDE 197 (258)
++|.=+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887644
No 197
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.55 E-value=0.13 Score=39.00 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.4
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+-+++.||+|+|||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999865
No 198
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.43 E-value=0.14 Score=39.39 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=17.4
Q ss_pred hcCCcEEEEcccCCCcchHhH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l 102 (258)
..++.+++.|++|||||+..-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 456789999999999998763
No 199
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=89.40 E-value=1.9 Score=36.15 Aligned_cols=136 Identities=10% Similarity=0.102 Sum_probs=76.4
Q ss_pred hhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHhc-CCcEEEeChHHHHHHHhcCC
Q psy4698 109 VDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLEA-GAQVVVGTPGRVFDMISRGA 184 (258)
Q Consensus 109 l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l~~~~ 184 (258)
+.....+.++||.++++.-+...+..++.. +..+..++++....+. ...... ..+|+|+|. . -..+
T Consensus 237 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G 306 (395)
T 3pey_A 237 LYGLMTIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARG 306 (395)
T ss_dssp HHTTTTSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSS
T ss_pred HHHhccCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcC
Confidence 333334468999999999999999988775 3566677777554332 223333 478999995 2 2345
Q ss_pred CCCCCccEEEEccchhhhccC-cHHHHHHHHHhCCC-CccEEEEEeeCCh---hHHHHHHHhcCCCeEEEecCCc
Q psy4698 185 LSTKQIRMFVLDEADEMLSRG-FKDQIYDVFKHLNN-DVQVILLSATMPA---DVLDVSMKFMRDPIKILVKKEE 254 (258)
Q Consensus 185 ~~~~~l~~lVvDE~h~~~~~~-~~~~~~~~~~~l~~-~~~~i~~SAT~~~---~~~~~~~~~~~~~~~v~~~~~~ 254 (258)
++++++++||.-+...+.... ....+...+-+... ...-..+.-.-+. ...+.++.++.+..+..++.++
T Consensus 307 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 307 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp CCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSC
T ss_pred CCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHH
Confidence 788899999876654321110 12222233333221 1112222222222 3445556666666666655443
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.26 E-value=0.58 Score=40.65 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.7
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..++|.||||||||+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4456899999999999864
No 201
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.19 E-value=4.6 Score=35.99 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=57.4
Q ss_pred HHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHH
Q psy4698 105 ILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMI 180 (258)
Q Consensus 105 ~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l 180 (258)
+...+.....+.++||.|+++.-+...+..+++... .+..+..++++....+.. .... ...+|+|+|. .+
T Consensus 329 l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~ 402 (563)
T 3i5x_A 329 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG 402 (563)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG
T ss_pred HHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh
Confidence 333344334556899999999999999998877532 245677777776544322 2222 4489999995 22
Q ss_pred hcCCCCCCCccEEEEccc
Q psy4698 181 SRGALSTKQIRMFVLDEA 198 (258)
Q Consensus 181 ~~~~~~~~~l~~lVvDE~ 198 (258)
. .+++++++++||.-..
T Consensus 403 ~-~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 403 A-RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp T-SSCCCTTCCEEEEESC
T ss_pred h-cCCCcccCCEEEEECC
Confidence 3 4578888888876553
No 202
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=89.01 E-value=0.19 Score=42.73 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.7
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
++..++.|.| ++..|.||||||.++
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3445568876 888999999999875
No 203
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.94 E-value=2.7 Score=34.57 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=50.3
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQI 190 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l 190 (258)
+.++||.|+++.-+......+... ++.+..++|+....+.. .... ...+|+|+|- .+. .+++++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh-cCccccce
Confidence 458999999999999888877554 56777888876544332 2233 3478999993 222 35677888
Q ss_pred cEEEEcc
Q psy4698 191 RMFVLDE 197 (258)
Q Consensus 191 ~~lVvDE 197 (258)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8777533
No 204
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.91 E-value=0.21 Score=42.49 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.4
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|..+++.||||||||+..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 568889999999999999853
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.64 E-value=0.48 Score=40.05 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.5
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4468999999999999876
No 206
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.64 E-value=0.51 Score=42.07 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=20.7
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
.+.+++|.|+||||||.+.-..+...+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999876444444443
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.63 E-value=0.3 Score=37.74 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=25.1
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+..|.-+++.|++|+|||......+. . .+.+++++.-
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~----~--~~~~v~~i~~ 53 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL----L--SGKKVAYVDT 53 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH----H--HCSEEEEEES
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH----H--cCCcEEEEEC
Confidence 33556799999999999987654433 1 2336777763
No 208
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.54 E-value=3.5 Score=34.90 Aligned_cols=72 Identities=17% Similarity=0.343 Sum_probs=51.5
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+...++.++.. +..+..++++....+.. .... ...+|+|+|. .+.. ++++++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCccc
Confidence 4568999999999999999888775 46677778776544322 2222 3478999994 3333 468888
Q ss_pred ccEEEE
Q psy4698 190 IRMFVL 195 (258)
Q Consensus 190 l~~lVv 195 (258)
++++|.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 209
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.37 E-value=0.17 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=16.3
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998764
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.30 E-value=0.13 Score=38.97 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|..+++.|++|||||+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 456778999999999999864
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.22 E-value=0.77 Score=37.40 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=16.0
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999875
No 212
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.20 E-value=0.19 Score=37.80 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.5
Q ss_pred hcCCcEEEEcccCCCcchHhH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l 102 (258)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998753
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.17 E-value=4 Score=35.41 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
++.+++.|+.|+|||+.....+.. +... +.+++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~-l~~~--g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY-YKGK--GRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHTT--TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHc--CCeEEEee
Confidence 345788899999999875433322 2222 34666665
No 214
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.17 E-value=0.52 Score=41.95 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 66 GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 66 ~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
.+..-...-..++..+..+.++++.||+|+|||..+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 343444444556666778899999999999999864
No 215
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.12 E-value=0.96 Score=48.23 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=31.9
Q ss_pred CHHHHHHHHHCCCCCCcHHH-HH---HhhhhhcCCcEEEEcccCCCcchHhH
Q psy4698 55 SEELLRGIYAYGFEKPSAIQ-QR---AIIPCVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~Q-~~---~~~~l~~g~~~li~~~tGsGKT~~~l 102 (258)
...+.+.+.+.|+. +.+.+ .+ ....+...+.+++.||||+|||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34556666677774 55554 22 23344566789999999999999873
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.10 E-value=0.33 Score=38.97 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.9
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..+.++++.|++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34678999999999999765
No 217
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.08 E-value=0.18 Score=38.61 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|.-+++.|++|||||+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345777999999999999865
No 218
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.08 E-value=0.96 Score=40.99 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
.+-+++++||+-.-+|......+...++.+.++. .+++.+.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH 537 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAH 537 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 3456999999998888877888888888775544 4444443
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.07 E-value=0.19 Score=38.74 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.3
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+-+++.||+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999865
No 220
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=87.99 E-value=0.98 Score=44.59 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=41.6
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhc---------cccceEEEEeccHHHHHHHHHHHHHh
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQN---------IKECQALILAPTRELAQQIQKVVIAL 138 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~---------~~~~~~lil~P~~~l~~q~~~~~~~~ 138 (258)
+.+|.|+.|||||.+...-++..+... ....++|+++=|+.-+.+...++...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999999877777777642 12348999999999988888777653
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.95 E-value=0.19 Score=42.23 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.8
Q ss_pred hhcCCcEEEEcccCCCcchH
Q psy4698 81 CVRGNDVIAQAQSGTGKTAT 100 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~ 100 (258)
+..|..+++.||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 46788999999999999984
No 222
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.92 E-value=0.26 Score=38.17 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.4
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667999999999999865
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.89 E-value=0.2 Score=38.68 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
...|+-++++|++|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999865
No 224
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=87.88 E-value=0.29 Score=41.04 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=19.2
Q ss_pred hhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 78 IIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 78 ~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
+..++.|.| ++..|.||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344567876 888999999999875
No 225
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=87.83 E-value=0.29 Score=41.39 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=20.7
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778877 788999999999876
No 226
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.79 E-value=0.22 Score=41.94 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
++.++|.||||+|||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999998763
No 227
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.78 E-value=0.2 Score=37.46 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
++.++++|++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999876
No 228
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.74 E-value=6.5 Score=35.31 Aligned_cols=84 Identities=11% Similarity=0.142 Sum_probs=56.3
Q ss_pred HhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcC
Q psy4698 108 QVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRG 183 (258)
Q Consensus 108 ~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~ 183 (258)
.+.....+.++||.|+++.-+...+..++.... .+..+..++++....+.. .... ...+|+|+|. .+. .
T Consensus 281 ~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~ 353 (579)
T 3sqw_A 281 QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-R 353 (579)
T ss_dssp HHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-S
T ss_pred HHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-c
Confidence 333334456899999999999999998877532 245677777776544322 2222 4488999995 233 3
Q ss_pred CCCCCCccEEEEccc
Q psy4698 184 ALSTKQIRMFVLDEA 198 (258)
Q Consensus 184 ~~~~~~l~~lVvDE~ 198 (258)
+++++++++||.-..
T Consensus 354 GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 354 GMDFPNVHEVLQIGV 368 (579)
T ss_dssp SCCCTTCCEEEEESC
T ss_pred CCCcccCCEEEEcCC
Confidence 578888988886554
No 229
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.73 E-value=0.54 Score=40.23 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.2
Q ss_pred ccEEEEccchhhhcc---CcHHHHHHHHHhCCC-CccEEEEEeeCC
Q psy4698 190 IRMFVLDEADEMLSR---GFKDQIYDVFKHLNN-DVQVILLSATMP 231 (258)
Q Consensus 190 l~~lVvDE~h~~~~~---~~~~~~~~~~~~l~~-~~~~i~~SAT~~ 231 (258)
-.++|+||+|.++.. .....+..+++..++ ..-+++.|.++.
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 468999999999852 244556667766654 344555555543
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.69 E-value=0.44 Score=39.60 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=32.4
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhc---------ccc----ceEEEEeccHHH-HHHHHHHHHHh
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQN---------IKE----CQALILAPTREL-AQQIQKVVIAL 138 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~---------~~~----~~~lil~P~~~l-~~q~~~~~~~~ 138 (258)
.-++|.|++|+|||...+..+....... ..+ .+++|+.-...+ ..+....++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 5689999999999987765555432221 111 578888754332 34444444444
No 231
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.67 E-value=0.27 Score=38.15 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.9
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+-++|.||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566999999999999765
No 232
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=87.65 E-value=0.27 Score=41.51 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34567876 788999999999875
No 233
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.59 E-value=0.39 Score=48.01 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
++-+++|+||+=.-+|......+...+..+.++..+|+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4456999999998888877777777777665554444443
No 234
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.57 E-value=0.2 Score=37.02 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=14.1
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 235
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=87.27 E-value=0.34 Score=41.04 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=20.8
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5566778887 788999999999876
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.27 E-value=0.23 Score=38.00 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=16.8
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.-+.+.||+|||||+..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35777899999999999864
No 237
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=87.20 E-value=0.3 Score=41.44 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567876 888999999999875
No 238
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=87.12 E-value=0.32 Score=40.86 Aligned_cols=25 Identities=36% Similarity=0.702 Sum_probs=20.2
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4555678876 788999999999875
No 239
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.12 E-value=0.31 Score=42.14 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=20.7
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4556678887 788999999999886
No 240
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=87.12 E-value=0.31 Score=41.52 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=19.0
Q ss_pred hhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 78 IIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 78 ~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
+..++.|.| ++..|.||||||.++
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344567876 888999999999875
No 241
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=87.05 E-value=0.34 Score=41.02 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.4
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567876 888999999999875
No 242
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=87.03 E-value=0.3 Score=41.44 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=19.8
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
++..++.|.| ++..|.||||||.++
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445668876 788999999999875
No 243
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.01 E-value=0.88 Score=36.93 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcCC-----cEEEEcccCCCcchHhH
Q psy4698 56 EELLRGIYAYGFEKPSAIQQRAIIPCVRGN-----DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g~-----~~li~~~tGsGKT~~~l 102 (258)
..+.+.|+-.|+. |-.+-.. +...+.++ .+++.||+|+|||..+.
T Consensus 73 n~i~~~l~~qg~~-~~~~~~~-l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD-PQYAASV-FLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC-HHHHHHH-HHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHH-HHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677778777763 3322222 33334432 49999999999998764
No 244
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=86.97 E-value=0.35 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=18.6
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567876 788999999999875
No 245
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=86.95 E-value=0.32 Score=42.08 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34567876 888999999999875
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.94 E-value=5.7 Score=32.57 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
++.+++.|++|+|||......+.. +.. .+.+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~-~~~--~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF-YKK--KGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH-HHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH--CCCeEEEEe
Confidence 345788899999999865433322 222 233666665
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.93 E-value=0.53 Score=39.23 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=32.6
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEeccHHH-HHHHHHHHHHh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPTREL-AQQIQKVVIAL 138 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~~~l-~~q~~~~~~~~ 138 (258)
|.-+++.|++|+|||...+..+....... +.+.+++|+.-...+ ..+....++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45699999999999987765554433221 113478888754322 33344444444
No 248
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=86.91 E-value=0.34 Score=41.11 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34567876 888999999999875
No 249
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.90 E-value=0.27 Score=36.56 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|+.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999865
No 250
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=86.89 E-value=0.31 Score=41.27 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=19.0
Q ss_pred hhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 78 IIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 78 ~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
+..++.|.| ++..|.||||||.++
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344567876 788999999999875
No 251
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=86.87 E-value=0.35 Score=40.83 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34567876 788999999999875
No 252
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=86.84 E-value=0.33 Score=41.44 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34567876 788999999999875
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.84 E-value=0.25 Score=37.46 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=16.5
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999875
No 254
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=86.72 E-value=0.3 Score=41.54 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=19.1
Q ss_pred hhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 78 IIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 78 ~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
+..++.|.| ++..|.||||||.++
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344567876 788999999999875
No 255
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=86.69 E-value=0.32 Score=41.31 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.4
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
++..++.|.| ++..|.||||||.++
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3444567876 788899999999875
No 256
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.56 E-value=0.21 Score=41.64 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 75 QRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 75 ~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+...+..+.++++.||+|+|||..+
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 334445667889999999999999765
No 257
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.56 E-value=4.3 Score=34.21 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLEA-GAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++.-+...+..+... +..+..++++....+.. ..... ..+|+|+|. .+ ..++++++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 334 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQ 334 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTT
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccC
Confidence 4458999999999999999988776 35666777776544322 22333 478999994 22 34578889
Q ss_pred ccEEEEcc
Q psy4698 190 IRMFVLDE 197 (258)
Q Consensus 190 l~~lVvDE 197 (258)
+++||.-+
T Consensus 335 ~~~Vi~~~ 342 (412)
T 3fht_A 335 VSVVINFD 342 (412)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99988533
No 258
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.52 E-value=0.2 Score=37.58 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.4
Q ss_pred hcCCcEEEEcccCCCcchHhH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l 102 (258)
..|.-+.+.||.|||||+.+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456778999999999998653
No 259
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=86.40 E-value=0.33 Score=41.52 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=18.5
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34567876 888999999999875
No 260
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=86.30 E-value=0.31 Score=41.84 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=17.5
Q ss_pred hhcCCc--EEEEcccCCCcchHh
Q psy4698 81 CVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~--~li~~~tGsGKT~~~ 101 (258)
++.|.| ++..|.||||||.++
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHH
T ss_pred hhcCceeeEeeecCCCCCCCeEe
Confidence 457776 788999999999875
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=86.25 E-value=0.3 Score=38.25 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|+-+.+.||+|+|||+..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 457788999999999999864
No 262
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=86.21 E-value=0.37 Score=42.17 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=18.6
Q ss_pred hhhhcCCc--EEEEcccCCCcchHh
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
..++.|.| ++..|.||||||.++
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 33467876 888999999999876
No 263
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=86.08 E-value=0.3 Score=41.69 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455678876 788999999999875
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.02 E-value=1.2 Score=39.47 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=21.5
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEE
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALIL 121 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil 121 (258)
|.-+.+.|++|+|||+..- .+..+... .+.++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~--~LAgll~~-~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG--KLARQFEQ-QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH--HHHHHHHH-TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHH--HHHHHhhh-cCCeEEEe
Confidence 3458899999999998642 22222222 23356665
No 265
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=85.90 E-value=0.37 Score=41.76 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556678876 788999999999875
No 266
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=85.90 E-value=0.37 Score=41.23 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=19.9
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..++.|.| ++..|.||||||.++
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4455678876 788999999999875
No 267
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=85.89 E-value=0.4 Score=41.16 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.1
Q ss_pred hhhhcCCc--EEEEcccCCCcchHhH
Q psy4698 79 IPCVRGND--VIAQAQSGTGKTATFS 102 (258)
Q Consensus 79 ~~l~~g~~--~li~~~tGsGKT~~~l 102 (258)
..++.|.| ++..|.||||||.++.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 34567876 8889999999998863
No 268
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.88 E-value=0.91 Score=40.99 Aligned_cols=40 Identities=15% Similarity=0.396 Sum_probs=26.2
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhcc-ccceEEEEecc
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNI-KECQALILAPT 124 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~-~~~~~lil~P~ 124 (258)
.+++|.|.||||||.+.-..++..+.... ...+.+++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 47999999999999886555555444322 23355555454
No 269
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.87 E-value=0.51 Score=36.51 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=16.3
Q ss_pred EEEEcccCCCcchHhHHHHHH
Q psy4698 87 VIAQAQSGTGKTATFSISILQ 107 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~ 107 (258)
.++.|+.|||||..+..-++.
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999976544433
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.85 E-value=0.27 Score=39.53 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=14.4
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
.++|.|++|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999998763
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.80 E-value=0.16 Score=41.42 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=27.0
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHH-HHHHhhhh--hcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAI-QQRAIIPC--VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~-Q~~~~~~l--~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.+.+-...+++.+.+.-. .++ ..+++..+ .-.+.+++.||+|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 568888766677776654211 111 11222221 12244999999999999864
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.72 E-value=0.31 Score=36.74 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|+.|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999865
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.66 E-value=0.36 Score=40.24 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=14.9
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
+-++|.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347899999999998763
No 274
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.55 E-value=0.33 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.4
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999864
No 275
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.49 E-value=0.33 Score=37.26 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.6
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+++.|+.|||||+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5677999999999999865
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.48 E-value=0.38 Score=40.06 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
-++|.||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999998763
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=85.43 E-value=0.3 Score=36.12 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=14.1
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.41 E-value=0.3 Score=36.42 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=14.1
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999865
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.28 E-value=0.29 Score=36.51 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+++.|+.|||||+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999865
No 280
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=0.32 Score=42.48 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=31.9
Q ss_pred cccCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 45 VAENFDDMELSEELLRGIYAY---GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
...+|.+.+=-...++.+++. -+.+|--++..- +...+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 345788887555666555432 111222222221 223467999999999999875
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.23 E-value=0.28 Score=38.58 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=14.0
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|.-+.+.||+|+|||+..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 456778999999999999865
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.22 E-value=0.24 Score=37.28 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+++.|+.|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999875
No 283
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.16 E-value=0.64 Score=39.13 Aligned_cols=42 Identities=12% Similarity=-0.046 Sum_probs=27.7
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhc---cccceEEEEeccH
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQN---IKECQALILAPTR 125 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~---~~~~~~lil~P~~ 125 (258)
|.-++|.|++|+|||...+..+....... +.+.+++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34689999999999987755554433221 1345788887544
No 284
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.00 E-value=0.99 Score=35.19 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=27.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHhhhhhcC----CcEEEEcccCCCcchHh
Q psy4698 55 SEELLRGIYAYGFEKPSAIQQRAIIPCVRG----NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~Q~~~~~~l~~g----~~~li~~~tGsGKT~~~ 101 (258)
-..+.+.|+=.|+ .+-.+ ...+.....+ +.+++.||.|+|||..+
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3456666654443 34444 3444444444 35999999999999865
No 285
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.98 E-value=0.46 Score=36.71 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=16.6
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6777999999999999864
No 286
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.90 E-value=0.34 Score=39.55 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.4
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.++.+++.||+|+|||..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999875
No 287
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.87 E-value=0.53 Score=36.41 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=22.8
Q ss_pred CcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 70 PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
.++.++... .+..|..+++.|+.|||||+..
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 345555553 3556778999999999999865
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.72 E-value=0.36 Score=37.25 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.1
Q ss_pred hhhcCCcEEEEcccCCCcchHh
Q psy4698 80 PCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 80 ~l~~g~~~li~~~tGsGKT~~~ 101 (258)
.+..|.-+.+.||.|+|||+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5678888999999999999864
No 289
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.44 E-value=2.1 Score=46.38 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=31.7
Q ss_pred CHHHHHHHHHCCCCCCcHHH-HHHh---hhhhcCCcEEEEcccCCCcchHhH
Q psy4698 55 SEELLRGIYAYGFEKPSAIQ-QRAI---IPCVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~Q-~~~~---~~l~~g~~~li~~~tGsGKT~~~l 102 (258)
...+.+.+.+.|+. +.+.+ .+++ +.+...+.+++.||||+|||.++-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 35566667778884 45544 3333 334455669999999999999873
No 290
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.36 E-value=0.56 Score=38.74 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=16.9
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..+.++++.|++|+|||..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34568999999999999865
No 291
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.30 E-value=0.79 Score=38.72 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=27.3
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|.-+++.|++|+|||...+..+...... +.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 45679999999999998765555444332 3468888743
No 292
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.29 E-value=14 Score=33.48 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=54.4
Q ss_pred HHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHH
Q psy4698 104 SILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDM 179 (258)
Q Consensus 104 ~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~ 179 (258)
.++..+.....+.++||.|+++.-+.+.+..++.. ++.+..++++....+.. .... ...+|+|+|. .
T Consensus 256 ~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a 326 (591)
T 2v1x_A 256 DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----A 326 (591)
T ss_dssp HHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----T
T ss_pred HHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----h
Confidence 34444443334568999999999999999988775 46777788876544322 2222 3478999994 1
Q ss_pred HhcCCCCCCCccEEEE
Q psy4698 180 ISRGALSTKQIRMFVL 195 (258)
Q Consensus 180 l~~~~~~~~~l~~lVv 195 (258)
+ ..+++.+++++||.
T Consensus 327 ~-~~GID~p~V~~VI~ 341 (591)
T 2v1x_A 327 F-GMGIDKPDVRFVIH 341 (591)
T ss_dssp S-CTTCCCSCEEEEEE
T ss_pred h-hcCCCcccccEEEE
Confidence 1 23466777777774
No 293
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.07 E-value=7.5 Score=32.64 Aligned_cols=74 Identities=12% Similarity=0.226 Sum_probs=51.5
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHhc-CCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLEA-GAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++.-+...++.++..+ ..+..++++....+. .....+ ..+|+|+|. . -..++++++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccC
Confidence 44589999999999999999887763 566677777654332 223333 478999994 2 234578888
Q ss_pred ccEEEEcc
Q psy4698 190 IRMFVLDE 197 (258)
Q Consensus 190 l~~lVvDE 197 (258)
++++|.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88887543
No 294
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.04 E-value=0.41 Score=37.57 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
...|+-+++.||.|+|||+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778999999999999864
No 295
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.78 E-value=0.39 Score=38.36 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.4
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999865
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.74 E-value=0.93 Score=46.22 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE 163 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (258)
|+.+.+.||.|||||+.++-.+.+ ... .+..++|+.+-.++.... +++++-+++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~-~~~--~g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAA-AQR--EGKTCAFIDAEHALDPIY---ARKLGVDID-------------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH-HHH--TTCCEEEECTTSCCCHHH---HHHTTCCGG--------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH-HHh--cCCeEEEEecCCCCCHHH---HHHcCCCHH--------------------
Confidence 367999999999999987544433 332 244799998876665554 445543222
Q ss_pred cCCcEEEeChH---HHHHHHhcCCCCCCCccEEEEccchhhh
Q psy4698 164 AGAQVVVGTPG---RVFDMISRGALSTKQIRMFVLDEADEML 202 (258)
Q Consensus 164 ~~~~Ilv~Tp~---~l~~~l~~~~~~~~~l~~lVvDE~h~~~ 202 (258)
++++.-|+ +.++.+.. .+.-..+++||||.+-.+.
T Consensus 1485 ---~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 ---NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ---GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCC
T ss_pred ---HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCC
Confidence 25555553 33332211 0111246799999988654
No 297
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=83.66 E-value=3 Score=36.27 Aligned_cols=68 Identities=7% Similarity=0.040 Sum_probs=45.3
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
+.+++|.||++.-+...+..++.. +..+..+++.... ....... ...+|+|+|. .+. .+++++ +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 358999999999999999988776 4667777774322 2223333 3489999994 233 346777 8887
Q ss_pred E
Q psy4698 194 V 194 (258)
Q Consensus 194 V 194 (258)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.53 E-value=0.44 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.3
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+++.|+.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999875
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=83.32 E-value=0.37 Score=36.41 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|+.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 300
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.28 E-value=5 Score=35.62 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=22.3
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
.++++|++|+|||+...-.+. .+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~~--G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQRK--GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT--TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHhC--CCeEEEEec
Confidence 588999999999987643332 22222 345666664
No 301
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=83.26 E-value=8.9 Score=33.69 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=19.9
Q ss_pred hhhhhcCCcEEEEcccCCCcchHhH
Q psy4698 78 IIPCVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 78 ~~~l~~g~~~li~~~tGsGKT~~~l 102 (258)
+..+..|+..++.|+.|.|||....
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHH
Confidence 3345678889999999999998654
No 302
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.23 E-value=0.5 Score=39.76 Aligned_cols=19 Identities=47% Similarity=0.613 Sum_probs=16.2
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
++.+++.||+|+|||..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999998763
No 303
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.22 E-value=1 Score=38.23 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=27.5
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
.|.-+++.|++|+|||..++..+...... +.+++|+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 45679999999999998876555444332 2368888753
No 304
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=83.16 E-value=0.54 Score=39.33 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.8
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
.++|.||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998763
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.13 E-value=0.47 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.6
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+-++++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999864
No 306
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.12 E-value=7.9 Score=32.32 Aligned_cols=76 Identities=8% Similarity=0.148 Sum_probs=52.9
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHhc-CCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLEA-GAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.++++..+...++.++.. +..+..++++....+. .....+ ..+|+|+|. . -..++++++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCccc
Confidence 4458999999999999999888775 4566777777554332 222233 478999994 2 234578888
Q ss_pred ccEEEEccch
Q psy4698 190 IRMFVLDEAD 199 (258)
Q Consensus 190 l~~lVvDE~h 199 (258)
++++|.-+..
T Consensus 319 ~~~Vi~~~~p 328 (391)
T 1xti_A 319 VNIAFNYDMP 328 (391)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9998875543
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=83.09 E-value=0.41 Score=36.72 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=21.5
Q ss_pred CcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 70 PSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 70 ~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+...+ ....|..+++.|+.|||||+..
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 344444433 2345677999999999999865
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.04 E-value=0.3 Score=37.65 Aligned_cols=24 Identities=13% Similarity=0.017 Sum_probs=18.9
Q ss_pred hhhhhcCCcEEEEcccCCCcchHh
Q psy4698 78 IIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 78 ~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
++.+..+.-+.+.|++|||||+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 344556677899999999999865
No 309
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.03 E-value=0.45 Score=35.98 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.3
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999875
No 310
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.89 E-value=9.2 Score=32.23 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=51.5
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
...++||.|+++..+....+.+... +..+..++++....+.. .... ...+|+|+|. . -..++++++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~ 344 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQ 344 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCccc
Confidence 3448999999999999999888775 45667777776543322 2222 3478999995 2 234578889
Q ss_pred ccEEEEcc
Q psy4698 190 IRMFVLDE 197 (258)
Q Consensus 190 l~~lVvDE 197 (258)
++++|.-+
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 98888643
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.59 E-value=0.5 Score=36.74 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|++|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456899999999999875
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.46 E-value=0.47 Score=36.30 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=15.0
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+++.|+.|||||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999875
No 313
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=82.33 E-value=0.51 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.8
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+.|.||+|||||+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.26 E-value=0.6 Score=39.35 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.7
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 58999999999998763
No 315
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.20 E-value=8 Score=33.04 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=50.6
Q ss_pred cccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEEC--------CcchH---HHHHHHh-cCCcEEEeChHHHHHHH
Q psy4698 113 IKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIG--------GTIVR---DDIRKLE-AGAQVVVGTPGRVFDMI 180 (258)
Q Consensus 113 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~-~~~~Ilv~Tp~~l~~~l 180 (258)
..+.++||.++++..+....+.++.. ++.+..++| +.... ....... +.++|+|+|. .+
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc
Confidence 34568999999999999999888776 456666666 33222 1222233 3478999993 22
Q ss_pred hcCCCCCCCccEEEEccch
Q psy4698 181 SRGALSTKQIRMFVLDEAD 199 (258)
Q Consensus 181 ~~~~~~~~~l~~lVvDE~h 199 (258)
..++++..+++||+-+..
T Consensus 430 -~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -GGGGGSTTCCEEEESSCC
T ss_pred -ccCCCchhCCEEEEeCCC
Confidence 234678888888866544
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.18 E-value=0.5 Score=34.94 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.6
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
.++++.|+.|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998763
No 317
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.12 E-value=6.5 Score=36.14 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=54.6
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHH---HHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIR---KLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+......++.. ++.+..++++....+... ... +..+|+|||- . -..++++++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCC
Confidence 3458999999999999999988776 456666676654433222 233 3488999984 2 244578889
Q ss_pred ccEEEEccchh
Q psy4698 190 IRMFVLDEADE 200 (258)
Q Consensus 190 l~~lVvDE~h~ 200 (258)
++++|+-+++.
T Consensus 514 v~lVi~~d~d~ 524 (661)
T 2d7d_A 514 VSLVAILDADK 524 (661)
T ss_dssp EEEEEETTTTC
T ss_pred CCEEEEeCccc
Confidence 99999988764
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.09 E-value=1.1 Score=37.18 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-++|.|+.|||||+..
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3789999999999864
No 319
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.90 E-value=0.51 Score=36.74 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=15.9
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
...+++.|++|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998763
No 320
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.87 E-value=0.38 Score=36.38 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.4
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.-+++.|++|+|||+..
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34789999999999865
No 321
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.87 E-value=12 Score=32.20 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=50.6
Q ss_pred eEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccE
Q psy4698 117 QALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLEA-GAQVVVGTPGRVFDMISRGALSTKQIRM 192 (258)
Q Consensus 117 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~ 192 (258)
++||.|+++.-+....+.+... ++.+..++|+....+.. ....+ ..+|+|+|. .+ ..+++++++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCE
Confidence 4999999999999999888765 46677788876544332 22333 479999995 23 34578889998
Q ss_pred EEEc
Q psy4698 193 FVLD 196 (258)
Q Consensus 193 lVvD 196 (258)
+|.=
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8853
No 322
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.83 E-value=0.55 Score=35.11 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=11.5
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|+.|||||+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 323
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.74 E-value=0.54 Score=38.53 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.9
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.-++++|+.|||||+.+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999875
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=81.72 E-value=0.51 Score=36.93 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.6
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|++|||||+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 325
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.71 E-value=10 Score=33.74 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=50.4
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++.-++.++..++.. ++.+..++++....+. ..... ...+|+|+|. . -..++++++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a-~~~GiD~p~ 304 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----A-FGMGINKPN 304 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----T-SCTTTCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----h-hhCCCCccC
Confidence 4458999999999999999988775 4667778887654332 22222 3478999995 1 233466777
Q ss_pred ccEEEEc
Q psy4698 190 IRMFVLD 196 (258)
Q Consensus 190 l~~lVvD 196 (258)
+++||.-
T Consensus 305 v~~VI~~ 311 (523)
T 1oyw_A 305 VRFVVHF 311 (523)
T ss_dssp CCEEEES
T ss_pred ccEEEEE
Confidence 8777753
No 326
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=81.70 E-value=0.5 Score=35.39 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+++.|+.|||||+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566899999999999865
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.69 E-value=0.52 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|++|||||+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999875
No 328
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.60 E-value=0.71 Score=38.44 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=29.2
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHH-HHhh-hhhcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQ-RAII-PCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~-~~~~-~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..|++++=...+++.|.+.-. .+.+. +.+. .....+.+++.||+|+|||..+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467777666666666643210 00000 0000 1122367999999999999875
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.51 E-value=0.59 Score=34.80 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=14.4
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999876
No 330
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.29 E-value=0.61 Score=39.60 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.9
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999875
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.27 E-value=0.53 Score=35.69 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=16.1
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|++|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999875
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.13 E-value=0.68 Score=37.19 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=17.2
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|+.+++.|++|+|||+..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3889999999999999875
No 333
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.11 E-value=0.52 Score=38.65 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.9
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999865
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.09 E-value=0.65 Score=34.83 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.8
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+++.|+.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999876
No 335
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.08 E-value=0.55 Score=36.26 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999876
No 336
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.05 E-value=1.5 Score=36.25 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=22.2
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
|..+.+.||+|+|||+..- .+..+.... +.++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~~~-~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQNL-GKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHHTT-TCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHhc-CCEEEEEe
Confidence 5568899999999998642 222333322 33566654
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=80.99 E-value=0.63 Score=34.41 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.7
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.|+.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999875
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.95 E-value=0.54 Score=35.33 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.85 E-value=0.55 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+.-+++.|+.|||||+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 456899999999999875
No 340
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.70 E-value=1.2 Score=37.77 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=26.5
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTR 125 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~ 125 (258)
.|.-++|.||+|+|||...+..+... .. .+.+++|+....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~--~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QK--MGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEeccc
Confidence 45679999999999998664444332 22 234688887543
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=80.69 E-value=0.59 Score=35.86 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=16.4
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|+.|||||+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999875
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=80.38 E-value=0.59 Score=35.23 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.5
Q ss_pred cCCcEEEEcccCCCcchHhH
Q psy4698 83 RGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l 102 (258)
.|..+++.|+.|||||+..-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668999999999998753
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.30 E-value=0.55 Score=36.15 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.6
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+.+.|++|||||+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4556889999999999864
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.28 E-value=0.68 Score=35.34 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.9
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+++.|+.|||||+..
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999875
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.20 E-value=1.3 Score=36.56 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.6
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+.+.|++|+|||+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999864
No 346
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.13 E-value=0.57 Score=39.02 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999865
No 347
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.11 E-value=0.6 Score=37.04 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=27.4
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCC--CccEEEE
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNN--DVQVILL 226 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~--~~~~i~~ 226 (258)
+-+++++||.-.-+|......+..+++.+.. ...+|+.
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV 202 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3469999999988887777888888877753 3434443
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.04 E-value=0.63 Score=35.97 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999876
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.00 E-value=0.64 Score=36.98 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.7
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.||+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44999999999999864
No 350
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.95 E-value=0.66 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.8
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999864
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.93 E-value=0.66 Score=35.62 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=16.4
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999876
No 352
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.87 E-value=0.75 Score=39.71 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.4
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 37899999999998763
No 353
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=79.79 E-value=0.94 Score=38.48 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=16.1
Q ss_pred cCCc--EEEEcccCCCcchHh
Q psy4698 83 RGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~--~li~~~tGsGKT~~~ 101 (258)
.|.+ ++..|.||||||.++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999875
No 354
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.79 E-value=0.93 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999876
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=79.78 E-value=0.61 Score=35.03 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.6
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.|+.|||||+..
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999875
No 356
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.63 E-value=0.68 Score=35.16 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.9
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999865
No 357
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.60 E-value=0.63 Score=38.11 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.0
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999876
No 358
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.52 E-value=1.1 Score=37.80 Aligned_cols=39 Identities=10% Similarity=-0.051 Sum_probs=24.0
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhh-c--cccceEEEEec
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQ-N--IKECQALILAP 123 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~-~--~~~~~~lil~P 123 (258)
.-+.|.|+.|+|||......+...... . +.+.+++++.-
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 458999999999998765444332111 1 11246777764
No 359
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.48 E-value=0.46 Score=41.37 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=32.7
Q ss_pred cccCcCCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 45 VAENFDDMELSEELLRGIYAY---GFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 45 ~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
...+|++.+=-...++.+++. -+..|--++..-+ ...+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345788887555555555432 1223333333222 23467999999999999865
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.42 E-value=0.66 Score=35.99 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=18.2
Q ss_pred hhcCCcEEEEcccCCCcchHhHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSI 103 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~ 103 (258)
+..|.-+.+.||+|+|||+....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 34567799999999999986543
No 361
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.24 E-value=0.49 Score=39.64 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=18.2
Q ss_pred cCCcEEEEcccCCCcchHhHHHHH
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISIL 106 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l 106 (258)
.|..+++.||+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999987654443
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.16 E-value=0.7 Score=35.26 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.6
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+++.|+.|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999875
No 363
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.14 E-value=0.89 Score=39.81 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.8
Q ss_pred cCCcEEEEcccCCCcchHhH
Q psy4698 83 RGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l 102 (258)
.++++++.||+|+|||..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34679999999999998763
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.08 E-value=0.78 Score=36.07 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|++|||||+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457999999999999875
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.05 E-value=0.73 Score=34.67 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.5
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999875
No 366
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.95 E-value=0.71 Score=35.85 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.7
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+.+.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999865
No 367
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.92 E-value=1.7 Score=35.96 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.0
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
+-+++.|++|+|||+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 458899999999997653
No 368
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=78.90 E-value=0.97 Score=37.45 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|..+.|.||+|+|||+..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 457788999999999999754
No 369
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=78.87 E-value=0.76 Score=33.80 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999875
No 370
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=78.85 E-value=4 Score=35.33 Aligned_cols=67 Identities=9% Similarity=0.002 Sum_probs=45.0
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL-EAGAQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
+.+++|+||++.-+...+..++.. +..+..+++..... ..... ....+|+|+|. .+.. +++++ +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~-~~~~f~~g~~~vLVaT~-----v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFES-EYPKCKSEKWDFVITTD-----ISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHH-HTTHHHHSCCSEEEECG-----GGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHH-HHHhhcCCCCeEEEECc-----hHHc-CcccC-CcEE
Confidence 347999999999999999888776 46677777763222 22222 34589999995 3333 35665 5554
No 371
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.84 E-value=0.4 Score=38.45 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=15.5
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999875
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.72 E-value=0.74 Score=34.78 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=13.6
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999876
No 373
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.61 E-value=1.9 Score=34.01 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=19.1
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
++++.++.|.|||..++--+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5899999999999987555544433
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.60 E-value=0.83 Score=36.28 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.9
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+++.|+.|||||+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999876
No 375
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=78.41 E-value=0.78 Score=35.13 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.8
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.+.|+.|||||++.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999865
No 376
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=78.30 E-value=0.74 Score=36.56 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=24.3
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHH---hCCCCccEEEEEe
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFK---HLNNDVQVILLSA 228 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~---~l~~~~~~i~~SA 228 (258)
-+++++||.-.-+|......+...+. .+.....+|+.|-
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 45999999987777666666666663 3333344444443
No 377
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.08 E-value=1 Score=37.94 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999875
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.99 E-value=1.1 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.2
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999865
No 379
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=77.97 E-value=0.98 Score=35.42 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcccCCCcchHhH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l 102 (258)
+...+-+++.||+||||++.+-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3444568889999999998753
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.95 E-value=0.82 Score=35.48 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.3
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999875
No 381
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.87 E-value=0.83 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.6
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.+.||.|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999864
No 382
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.82 E-value=6.7 Score=34.47 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=53.1
Q ss_pred CCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEEC--------CcchH---HHHHHHh
Q psy4698 95 TGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIG--------GTIVR---DDIRKLE 163 (258)
Q Consensus 95 sGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~ 163 (258)
++|... +.-++........+.++||.|+++..+......++..+....+.+..+.| +.... .......
T Consensus 370 ~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHH-HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHH-HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 445433 33344444333445689999999999999999998865333334443333 22211 1222333
Q ss_pred c--CCcEEEeChHHHHHHHhcCCCCCCCccEEEEcc
Q psy4698 164 A--GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDE 197 (258)
Q Consensus 164 ~--~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE 197 (258)
+ ..+|+|||. .+ ..++++.++++||.=+
T Consensus 449 ~~g~~~vLvaT~-----~~-~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 449 ASGDNNILIATS-----VA-DEGIDIAECNLVILYE 478 (555)
T ss_dssp ---CCSEEEECC-----CT-TCCEETTSCSEEEEES
T ss_pred cCCCeeEEEEcc-----hh-hcCCccccCCEEEEeC
Confidence 3 378999994 22 3456788888877633
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=77.78 E-value=0.77 Score=34.34 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.9
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-.+|.|++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999864
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=77.64 E-value=0.81 Score=36.72 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.8
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..++++|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45899999999999875
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.53 E-value=0.85 Score=35.65 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
.+-+++++||.-.-+|......+..++..+...-..++++.
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34569999999988888888888888777643223444443
No 386
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.49 E-value=0.69 Score=36.95 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|++|||||+.+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999865
No 387
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=77.43 E-value=9.6 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=22.4
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
.+++.|+.|+|||++..--+... ... .+.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l-~~~-~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL-REK-HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHT-SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHh-cCCeEEEEe
Confidence 57888999999998764433322 222 134677766
No 388
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.36 E-value=0.82 Score=38.85 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=27.9
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+-+++++||.-.-++......+..++..+...-..++++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i 341 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI 341 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3557899999887777777777788887775443344443
No 389
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=77.31 E-value=0.8 Score=34.96 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.9
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.+.|+.|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999865
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.24 E-value=2.2 Score=32.02 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=17.1
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhhh
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVDQ 111 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~~ 111 (258)
-+.+.|+.|||||... ..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHh
Confidence 4789999999999764 334444443
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=77.05 E-value=0.82 Score=35.34 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 392
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=76.83 E-value=0.84 Score=37.18 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=22.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLN 218 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~ 218 (258)
+-+++++||.-.-+|......+..+++.+.
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 446999999987777767777777777664
No 393
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.78 E-value=0.92 Score=35.42 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 394
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.68 E-value=0.86 Score=35.94 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.5
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|.-+.+.||.|+|||+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 456788999999999999853
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.64 E-value=1.8 Score=36.63 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.1
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
|.-+.+.|++|+|||+..
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445889999999999864
No 396
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.55 E-value=1.4 Score=38.78 Aligned_cols=19 Identities=32% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 397
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=76.45 E-value=0.99 Score=35.74 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.5
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+..+++.|+.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456999999999999865
No 398
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.33 E-value=2.2 Score=35.49 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 84 GNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
++-+++.|++|+|||+....-+. .+.. .+.+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~-~l~~--~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN-YYAE--LGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH-HHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH--CCCeEEEEe
Confidence 34588999999999986533222 2222 234676664
No 399
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=76.32 E-value=0.88 Score=36.36 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=28.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
+-+++++||.-.-+|......+..+++.+.... .++++..
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~-tviivtH 202 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGR-TVIIIAH 202 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTS-EEEEECS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC-EEEEEeC
Confidence 346999999988777777777887777764433 4444433
No 400
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.24 E-value=0.85 Score=35.82 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=27.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+-+++++||.-.-+|......+..+++.+...-..++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~v 196 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3456999999988778777777778777764333344443
No 401
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=76.20 E-value=0.91 Score=36.58 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=28.0
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
-+++++||.-.-+|......+..++..+.... .++++..
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~-tviivtH 212 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR-TLIIIAH 212 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTTTS-EEEEECS
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEcC
Confidence 35999999988888777778888887775543 4554433
No 402
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.20 E-value=1.5 Score=33.45 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCCccEEEEccchhh--hccCcHHHHHHHHHhCCCCccEEEEEeeCChhH-HHHHHHhc--CCCeEEEecCC
Q psy4698 187 TKQIRMFVLDEADEM--LSRGFKDQIYDVFKHLNNDVQVILLSATMPADV-LDVSMKFM--RDPIKILVKKE 253 (258)
Q Consensus 187 ~~~l~~lVvDE~h~~--~~~~~~~~~~~~~~~l~~~~~~i~~SAT~~~~~-~~~~~~~~--~~~~~v~~~~~ 253 (258)
..+.+++|+||+..+ .+..+...+..++.. ...+|+-+.|++.+. ..++.... .+-.++.+..+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~ 171 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKE 171 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSS
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChH
Confidence 456789999998665 233355555555542 333555577764221 23444433 34466655543
No 403
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=75.95 E-value=1.3 Score=41.29 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=20.3
Q ss_pred HhhhhhcCCc--EEEEcccCCCcchHh
Q psy4698 77 AIIPCVRGND--VIAQAQSGTGKTATF 101 (258)
Q Consensus 77 ~~~~l~~g~~--~li~~~tGsGKT~~~ 101 (258)
.+..+++|.| ++..|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5666778876 777899999999875
No 404
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.89 E-value=2.9 Score=36.05 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=23.0
Q ss_pred cHHHHHHhhh---hhcCCcEEEEcccCCCcchHhH
Q psy4698 71 SAIQQRAIIP---CVRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 71 ~~~Q~~~~~~---l~~g~~~li~~~tGsGKT~~~l 102 (258)
-..-..+++. +-.|..+.|.|++|+|||....
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 3344445544 4568889999999999998753
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=75.83 E-value=0.89 Score=33.66 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=16.8
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.-+.+.||.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56777899999999999753
No 406
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.81 E-value=1.3 Score=34.32 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.8
Q ss_pred EEEEcccCCCcchHhH
Q psy4698 87 VIAQAQSGTGKTATFS 102 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l 102 (258)
+++.||+||||++.+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998763
No 407
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.79 E-value=6.9 Score=36.08 Aligned_cols=68 Identities=6% Similarity=0.044 Sum_probs=46.2
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
+.++||+||++.-++..+..++.. ++.+..+++.. ......... ...+|+|+|. .+.. +++++ +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hhhc-ceeeC-CcEE
Confidence 458999999999999988887665 56777778742 222222333 3479999994 3333 45777 7776
Q ss_pred E
Q psy4698 194 V 194 (258)
Q Consensus 194 V 194 (258)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 408
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=75.68 E-value=1.4 Score=35.16 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.3
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|..+.|.|++|||||+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999875
No 409
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=75.66 E-value=0.91 Score=38.58 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=0.0
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
.+|.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 410
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.65 E-value=0.94 Score=36.40 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=27.5
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
+-+++++||.-.-+|......+..+++.+...-..++++.
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 210 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4469999999887887777778887777643323444433
No 411
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.65 E-value=0.96 Score=36.61 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNN 219 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~ 219 (258)
+-+++++||.-.-+|......+..+++.+..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 5678999999877777667777777776643
No 412
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=75.53 E-value=0.85 Score=36.32 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.4
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
-+++++||.-.-+|......+..++..+.... .++++
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-tvi~v 194 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGR-TTLVI 194 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTS-EEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCC-EEEEE
Confidence 35999999998888877777777777665433 44444
No 413
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=75.38 E-value=27 Score=32.08 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=53.1
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCCc
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLEA-GAQVVVGTPGRVFDMISRGALSTKQI 190 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~l 190 (258)
+.++||.|+++..+......+... ++.+..++++....+.. ..... ..+|+|||- .+ ..+++++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 458999999999999999988776 35666667665433322 22333 478999983 22 345788889
Q ss_pred cEEEEccchh
Q psy4698 191 RMFVLDEADE 200 (258)
Q Consensus 191 ~~lVvDE~h~ 200 (258)
+++|+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9888877753
No 414
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.35 E-value=1 Score=36.40 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=28.1
Q ss_pred cCcCCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhh--hcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPC--VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~~~Q~~~~~~l--~~g~~~li~~~tGsGKT~~~ 101 (258)
..|+++.-.+.+...++.... ... ...++..+ .-.+.+++.||+|+|||..+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 457777666666555543210 000 01222221 11234999999999999864
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=75.32 E-value=0.99 Score=36.41 Aligned_cols=31 Identities=13% Similarity=0.367 Sum_probs=23.8
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNN 219 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~ 219 (258)
+-+++++||.-.-+|......+..+++.+..
T Consensus 171 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 201 (262)
T 1b0u_A 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAE 201 (262)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 3469999999887777777777777777643
No 416
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.20 E-value=0.99 Score=35.87 Aligned_cols=40 Identities=15% Similarity=0.439 Sum_probs=27.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCC-CccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN-DVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~-~~~~i~~S 227 (258)
.+-+++++||.-.-+|......+..+++.+.. ..-+|+.|
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vt 196 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34569999999888887777777777777643 33344433
No 417
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=75.06 E-value=1 Score=34.15 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=14.2
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.|.|++|||||++.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999875
No 418
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.83 E-value=1.5 Score=39.89 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=14.6
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999754
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.67 E-value=1.1 Score=34.57 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.6
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..+.+.|+.|||||++.
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999865
No 420
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.49 E-value=2.1 Score=38.91 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.7
Q ss_pred hhhhcCCcEEEEcccCCCcchHh
Q psy4698 79 IPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 79 ~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..+..|..+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34667889999999999999875
No 421
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=74.44 E-value=1.4 Score=38.46 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.9
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999875
No 422
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=74.24 E-value=1.1 Score=36.25 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=27.8
Q ss_pred cEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 191 RMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 191 ~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
+++++||.-.-+|......+..+++.+...-..++++
T Consensus 184 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 184 ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5999999998888878888888888875433345544
No 423
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.17 E-value=1.1 Score=36.02 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=28.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
.+-+++++||.-.-+|......+..+++.+...-..++++.
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivt 203 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 34569999999887777777777777777643333444443
No 424
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.02 E-value=1.1 Score=35.83 Aligned_cols=39 Identities=18% Similarity=0.046 Sum_probs=28.2
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
-+++++||.-.-+|......+..+++.+...-..++++.
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 200 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVIT 200 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEEC
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 359999999988888778888888887754333444443
No 425
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=74.01 E-value=1.1 Score=36.31 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=29.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCC-ccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNND-VQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~-~~~i~~S 227 (258)
.+-+++++||.-.-+|......+..++..+... -..++++
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 345699999999888887888888888887542 3344443
No 426
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.01 E-value=2.5 Score=37.68 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=26.3
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+..|..+++.|++|+|||+.....++.-+..... ..+++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~--g~i~v~ 75 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE--PGVFVT 75 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC--CEEEEE
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC--CEEEEE
Confidence 4567889999999999998765543444443222 255554
No 427
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=73.88 E-value=1.1 Score=36.14 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=27.5
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEe
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SA 228 (258)
+-+++++||.-.-+|......+..+++.+...-..++++.
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vt 195 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3469999999988887777778887777643233444443
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=73.85 E-value=1.2 Score=34.08 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=14.1
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.+.|+.|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999876
No 429
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.84 E-value=1.1 Score=35.84 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=25.6
Q ss_pred EEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 192 MFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 192 ~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
++++||.-.-+|......+..+++.+...-..++++
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 189 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999988888777777777777764323344444
No 430
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=73.67 E-value=1.2 Score=36.08 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=28.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
.+-+++++||.-.-+|......+..+++.+...-..++++
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 215 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456999999988888777777888877764333344444
No 431
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=73.58 E-value=1.1 Score=35.85 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=23.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNN 219 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~ 219 (258)
+-+++++||.-.-+|......+..++..+..
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3469999999887777777777777777643
No 432
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.52 E-value=1.1 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.3
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.-+-|.||.|||||+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34556889999999999875
No 433
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.26 E-value=3.7 Score=35.68 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=22.6
Q ss_pred CcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 85 NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+.+++.|++|+|||....-.+.. +... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~-l~~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY-IQKR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH-HHHH--HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHc--CCeEEEEe
Confidence 36899999999999876433322 2222 33677665
No 434
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.55 E-value=0.7 Score=34.38 Aligned_cols=74 Identities=11% Similarity=0.206 Sum_probs=45.3
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++..+......++.. +..+..++|+....+. ..... ...+|+|+|. .+. .++++.+
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPD 98 (170)
Confidence 3458999999999998888877654 3455556665443222 12222 2368999993 222 2346666
Q ss_pred ccEEEEcc
Q psy4698 190 IRMFVLDE 197 (258)
Q Consensus 190 l~~lVvDE 197 (258)
++++|.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77666544
No 435
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.06 E-value=1.4 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.9
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999875
No 436
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=73.04 E-value=5.3 Score=33.23 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-+.|.||+|||||+..
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999864
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.02 E-value=4.1 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=16.6
Q ss_pred cEEEEcccCCCcchHhHHHHHHHhh
Q psy4698 86 DVIAQAQSGTGKTATFSISILQQVD 110 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l~~~l~~l~ 110 (258)
-+++.|+.|+|||... ..++..+.
T Consensus 8 ~i~i~G~sGsGKTTl~-~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL-KKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHHhcc
Confidence 4789999999999754 33333443
No 438
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=72.97 E-value=1.2 Score=36.32 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=21.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhC
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHL 217 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l 217 (258)
+-+++++||.=.-+|......+..+++.+
T Consensus 179 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 179 QPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 34699999998777776666666666655
No 439
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=72.88 E-value=1.3 Score=34.79 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.7
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+.+.|+.|||||+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4556899999999999853
No 440
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=72.82 E-value=21 Score=29.20 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=51.1
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
.+.++||.|+++.-+....+.++.. +..+..++++....+.. .... ...+|+|+|. .+.. ++++++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCccc
Confidence 3457999999999999999988776 45667777775543322 2223 3478999994 2222 367788
Q ss_pred ccEEEEccc
Q psy4698 190 IRMFVLDEA 198 (258)
Q Consensus 190 l~~lVvDE~ 198 (258)
++++|.-+.
T Consensus 307 ~~~Vi~~~~ 315 (367)
T 1hv8_A 307 LNCVINYHL 315 (367)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEecC
Confidence 888886543
No 441
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=72.72 E-value=6.6 Score=38.65 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=56.5
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCC
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDI---RKLE-AGAQVVVGTPGRVFDMISRGALSTKQ 189 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 189 (258)
++.+++|+|+++.-+...++.+++... +..+..++|+....+.. .... +..+|+|||. . -..++++++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v-~e~GiDip~ 882 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----I-IETGIDIPT 882 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----T-TGGGSCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-ceeeecccC
Confidence 345899999999999998888887643 45677777776544322 2233 3489999995 2 334578999
Q ss_pred ccEEEEccchh
Q psy4698 190 IRMFVLDEADE 200 (258)
Q Consensus 190 l~~lVvDE~h~ 200 (258)
++++|+..++.
T Consensus 883 v~~VIi~~~~~ 893 (1151)
T 2eyq_A 883 ANTIIIERADH 893 (1151)
T ss_dssp EEEEEETTTTS
T ss_pred CcEEEEeCCCC
Confidence 99999887764
No 442
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=72.50 E-value=3.6 Score=37.75 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=43.0
Q ss_pred cceEEEEeccHHHHHHHHHHHHHh--cCCCCceEEEEECC--------cchHHH---HHHHhc-CCcEEEeChHHHHHHH
Q psy4698 115 ECQALILAPTRELAQQIQKVVIAL--GDFMSVSCHACIGG--------TIVRDD---IRKLEA-GAQVVVGTPGRVFDMI 180 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l 180 (258)
+.++||.++++..+..+.+.++.. ....++.+..++|+ ....+. .....+ ..+|+|+|- .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~- 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----V- 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----S-
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----c-
Confidence 568999999999999999988764 22235666777776 433322 223333 367888884 1
Q ss_pred hcCCCCCCCccEEE
Q psy4698 181 SRGALSTKQIRMFV 194 (258)
Q Consensus 181 ~~~~~~~~~l~~lV 194 (258)
-..+++++++++||
T Consensus 474 ~~~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AEEGLDIKECNIVI 487 (699)
T ss_dssp CCTTSCCCSCCCCE
T ss_pred cccCCccccCCEEE
Confidence 22345566666555
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.50 E-value=1.4 Score=34.02 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.9
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-.+|.|++|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4789999999999864
No 444
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=72.46 E-value=9.9 Score=32.98 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=45.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q psy4698 116 CQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLE-AGAQVVVGTPGRVFDMISRGALSTKQIRMFV 194 (258)
Q Consensus 116 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lV 194 (258)
.++||.+|++.-+...+..++.. +..+..+++.... ....... ...+|+|+|. .+. .++++++ .+||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEEE
Confidence 47999999999999988888664 4566666665442 2222333 3489999994 333 3467777 6665
No 445
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.30 E-value=2.3 Score=40.16 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=32.2
Q ss_pred cCcCCCCCCHHHHHHHHHCC-CCCCcHHHHHHhhhhhcCCcEEEEcccCCCcchHh
Q psy4698 47 ENFDDMELSEELLRGIYAYG-FEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~-~~~~~~~Q~~~~~~l~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.+.+--...++.|.+.- ++..++.+..-+ -+...+.+++.||+|+|||+.+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 56888887788888876531 111111110000 0123357999999999999765
No 446
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=71.99 E-value=13 Score=34.77 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=51.5
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhc-------CCCCceEEEEECCcchHHHHHHHh---------cCCcEEEeChHHHH
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALG-------DFMSVSCHACIGGTIVRDDIRKLE---------AGAQVVVGTPGRVF 177 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~Ilv~Tp~~l~ 177 (258)
.+.++||.+|++.-+......+.... ...++.+..++++....+...... +...|+|+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 34589999999999999988877521 224677888888876554433222 2368999994
Q ss_pred HHHhcCCCCCCCccEEEE
Q psy4698 178 DMISRGALSTKQIRMFVL 195 (258)
Q Consensus 178 ~~l~~~~~~~~~l~~lVv 195 (258)
.+.. +++++++.+||-
T Consensus 378 -iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 -IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp -HHHH-TCCCTTEEEEEE
T ss_pred -HHHh-CcCcCCeEEEEe
Confidence 2333 467788876663
No 447
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.93 E-value=1.2 Score=34.00 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=15.1
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
+.-+.+.|+.|||||+..
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999865
No 448
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=71.77 E-value=1.9 Score=38.17 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=32.8
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHH
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVV 135 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 135 (258)
+..|.-++|.|++|+|||...+..+.+..... +.+++|++-.- ...+...++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC-CHHHHHHHH
Confidence 34556799999999999988766665554431 33688877432 233444433
No 449
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=71.76 E-value=2.1 Score=32.50 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=22.1
Q ss_pred EEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHH
Q psy4698 87 VIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126 (258)
Q Consensus 87 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~ 126 (258)
++|.|++|||||.-+... ... +.+++|+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~l----a~~---~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEAL----IGD---APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHH----HCS---CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHH----Hhc---CCCeEEEecCCC
Confidence 689999999999765322 122 336788886543
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=71.61 E-value=1.4 Score=34.65 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.5
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+++.|+.|||||+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5667999999999999875
No 451
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=71.37 E-value=0.97 Score=37.46 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=26.4
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
-+++++||.=.-+|......+...+..+.... .+++.
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~i 245 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANR-TTIVV 245 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 45999999987777777777777777765554 44443
No 452
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.30 E-value=1.4 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.4
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 567899999999999999864
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=71.26 E-value=1.5 Score=35.80 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=14.2
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-+++.|++|||||+.+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999876
No 454
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.10 E-value=2.1 Score=39.96 Aligned_cols=19 Identities=32% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCcEEEEcccCCCcchHhH
Q psy4698 84 GNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~l 102 (258)
..++++.||+|+|||.++-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999998763
No 455
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=70.82 E-value=1.4 Score=36.21 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|.-+.+.||.|+|||+..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 346778999999999999853
No 456
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=70.27 E-value=0.76 Score=35.29 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=13.4
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
+++.|+.|||||+..
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 689999999999865
No 457
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.81 E-value=8.1 Score=29.01 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=19.2
Q ss_pred EEEcccCCCcchHhHHHHHHHhhhccccceEEEEe
Q psy4698 88 IAQAQSGTGKTATFSISILQQVDQNIKECQALILA 122 (258)
Q Consensus 88 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~ 122 (258)
+..+..|.|||+.....+..... .+.+++++=
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD 37 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSR---SGYNIAVVD 37 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEE
Confidence 34467789999887544433322 234677765
No 458
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=69.73 E-value=1.6 Score=36.18 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=16.4
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..|.-+.|.|+.|||||+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCchHHHHH
Confidence 44566899999999999865
No 459
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=69.60 E-value=1.7 Score=34.56 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=14.3
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.|.|+.|||||+..
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999876
No 460
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=69.43 E-value=1.7 Score=36.40 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=26.9
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHHhCCC-CccEEEEE
Q psy4698 188 KQIRMFVLDEADEMLSRGFKDQIYDVFKHLNN-DVQVILLS 227 (258)
Q Consensus 188 ~~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~-~~~~i~~S 227 (258)
.+-.++++||.-.-++......+..++..+.. ..++|+.|
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 311 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34568999998877777666777777776643 34555544
No 461
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=69.36 E-value=1.6 Score=35.45 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.7
Q ss_pred cEEEEcccCCCcchHhH
Q psy4698 86 DVIAQAQSGTGKTATFS 102 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~l 102 (258)
.+.|.|+.|||||++.-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999998763
No 462
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=69.04 E-value=7.6 Score=32.71 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=46.2
Q ss_pred hhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHH---HHHHhc-CCcEEEeChHHHHHHHhcCC
Q psy4698 109 VDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDD---IRKLEA-GAQVVVGTPGRVFDMISRGA 184 (258)
Q Consensus 109 l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ilv~Tp~~l~~~l~~~~ 184 (258)
+.......++||.++++..+....+.++.. +..+..++++....+. .....+ ..+|+|+|. . -..+
T Consensus 274 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G 343 (414)
T 3eiq_A 274 LYETLTITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARG 343 (414)
T ss_dssp HHHSSCCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--
T ss_pred HHHhCCCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccC
Confidence 333334458999999999999988877654 4556667776554332 223333 378999995 2 2234
Q ss_pred CCCCCccEEEEcc
Q psy4698 185 LSTKQIRMFVLDE 197 (258)
Q Consensus 185 ~~~~~l~~lVvDE 197 (258)
++++++++||.-+
T Consensus 344 idip~v~~Vi~~~ 356 (414)
T 3eiq_A 344 IDVQQVSLVINYD 356 (414)
T ss_dssp CCGGGCSCEEESS
T ss_pred CCccCCCEEEEeC
Confidence 6777888877543
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=69.04 E-value=2 Score=33.72 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+..+.+.|+.|||||+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4456899999999999875
No 464
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=68.89 E-value=1.8 Score=35.52 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.9
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-+.|.|++|||||+.+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.67 E-value=3.9 Score=36.38 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=26.9
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
+..|..++|.|++|+|||......+-. .... +.+++++++.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~-~~~~--G~~vi~~~~e 318 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVEN-ACAN--KERAILFAYE 318 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH-HHTT--TCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH-HHhC--CCCEEEEEEe
Confidence 456778999999999999865433322 2222 3357777754
No 466
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=68.63 E-value=9.5 Score=34.91 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=43.2
Q ss_pred ccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEEC--------CcchHH---HHHHHh--cCCcEEEeChHHHHHHH
Q psy4698 114 KECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIG--------GTIVRD---DIRKLE--AGAQVVVGTPGRVFDMI 180 (258)
Q Consensus 114 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~~~--~~~~Ilv~Tp~~l~~~l 180 (258)
.+.++||.++++..+....+.++..+....+.+..++| +....+ ...... +..+|+|+|- .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v- 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----V- 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----S-
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----h-
Confidence 45689999999999999999998865333345554433 322221 222333 3478999994 2
Q ss_pred hcCCCCCCCccEEEEccc
Q psy4698 181 SRGALSTKQIRMFVLDEA 198 (258)
Q Consensus 181 ~~~~~~~~~l~~lVvDE~ 198 (258)
-..++++.++++||.=+.
T Consensus 471 ~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCCC---CCCSEEEEESC
T ss_pred hhcCCcCccCCEEEEeCC
Confidence 234567888888775443
No 467
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=68.57 E-value=1.9 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.0
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.|.|+.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 468
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=67.97 E-value=9.2 Score=33.66 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=42.4
Q ss_pred CCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEE--------ECCcchH---HHHHHHh
Q psy4698 95 TGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHAC--------IGGTIVR---DDIRKLE 163 (258)
Q Consensus 95 sGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~ 163 (258)
++|-... .-++........+.++||.|+++..+....+.++......++.+..+ +++.... .......
T Consensus 371 ~~K~~~L-~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 371 NPKLEEL-VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CHHHHHH-HHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred ChHHHHH-HHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4554432 33333333223456899999999999999988866421112222222 2222221 2223333
Q ss_pred c--CCcEEEeChHHHHHHHhcCCCCCCCccEEEEccc
Q psy4698 164 A--GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEA 198 (258)
Q Consensus 164 ~--~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 198 (258)
. ..+|+|||- .+. .++++.++++||.=+.
T Consensus 450 ~~g~~~vLvaT~-----~~~-~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 450 TSKDNRLLIATS-----VAD-EGIDIVQCNLVVLYEY 480 (556)
T ss_dssp ----CCEEEEEC-----------------CEEEEETC
T ss_pred ccCceEEEEEcC-----chh-cCCCchhCCEEEEeCC
Confidence 3 378999994 222 3467888888876443
No 469
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.95 E-value=2.8 Score=32.26 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=26.3
Q ss_pred ccEEEEccchhhhccC-cH---HHHHHHHHh-CCCCccEEEEEeeCChhHHHHHH
Q psy4698 190 IRMFVLDEADEMLSRG-FK---DQIYDVFKH-LNNDVQVILLSATMPADVLDVSM 239 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~-~~---~~~~~~~~~-l~~~~~~i~~SAT~~~~~~~~~~ 239 (258)
-.+|||||||.++... .. ..+...+.. -....++|+++.. +..+...++
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~-~~~l~~~lr 141 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG-PKLLDQNLR 141 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC-GGGBCHHHH
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC-HHHHhHHHH
Confidence 4489999999884321 11 122222222 1234588888877 444444443
No 470
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.86 E-value=2.3 Score=32.14 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=17.0
Q ss_pred cCCcEEEEcccCCCcchHhH
Q psy4698 83 RGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l 102 (258)
.|+-+++.|+.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56779999999999997653
No 471
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=67.82 E-value=4.1 Score=32.83 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=30.9
Q ss_pred cCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEeccHHHHHHHHHHHHHhc
Q psy4698 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALG 139 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 139 (258)
.|..+++.+++|+|||+..+..+...+.++ -+++|++- .+-..+....++.++
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~G---e~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSD---NLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTT---CEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCC---CcEEEEEE-eCCHHHHHHHHHHcC
Confidence 445688888888888855444444444432 36777763 333444455555553
No 472
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=67.72 E-value=1.8 Score=34.89 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=28.1
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
+-+++++||.-.-+|......+..+++.+.. .++++..
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtH 183 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTH 183 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEES
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEc
Confidence 3469999999888887778888888888754 4444433
No 473
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=67.58 E-value=3.8 Score=42.57 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=30.2
Q ss_pred hhcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEec
Q psy4698 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P 123 (258)
+..|+++++.|++|+|||..+...+.+.... +.+++|+.-
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~ 1117 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDA 1117 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEc
Confidence 4466889999999999999886666665544 346888863
No 474
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=67.16 E-value=24 Score=32.13 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=45.5
Q ss_pred cceEEEEeccHHHHHHHHHHHHHhcCCCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q psy4698 115 ECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKL-EAGAQVVVGTPGRVFDMISRGALSTKQIRMF 193 (258)
Q Consensus 115 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~~~l~~l 193 (258)
+.++||.|+++.-+...++.++.. +..+..+++..... ..... ....+|+|+|. .+.+ +++++ +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~-~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHH-HTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHH-HHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 347999999999999999988776 45666777653222 22233 34589999995 3333 45664 7766
Q ss_pred E
Q psy4698 194 V 194 (258)
Q Consensus 194 V 194 (258)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=67.09 E-value=2.7 Score=35.88 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=16.7
Q ss_pred hcCCcEEEEcccCCCcchHh
Q psy4698 82 VRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~ 101 (258)
..|+.+++.||.|+|||+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999864
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=66.96 E-value=2.3 Score=33.51 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=14.5
Q ss_pred hcCCcEEEEcccCCCcchHhH
Q psy4698 82 VRGNDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l 102 (258)
..|.-+++.|+.|+|||+..-
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~ 43 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQ 43 (227)
T ss_dssp CCCCEEEEECCC---CHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 356779999999999998753
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=66.87 E-value=2.1 Score=35.04 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=11.1
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
-+.|.|+.|||||++.
T Consensus 7 iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVK 22 (290)
T ss_dssp EEEEESCC---CCTHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999876
No 478
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=66.79 E-value=3.7 Score=33.77 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=16.4
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.++.++|.|+.|+|||...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HCSEEEEECCTTSSHHHHH
T ss_pred cCCeEEEECCCcCCHHHHH
Confidence 4678999999999999864
No 479
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.70 E-value=2.4 Score=35.07 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=0.0
Q ss_pred EEEEcccCCCcchHh
Q psy4698 87 VIAQAQSGTGKTATF 101 (258)
Q Consensus 87 ~li~~~tGsGKT~~~ 101 (258)
.+|.|++|+|||...
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=66.12 E-value=2.1 Score=34.22 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.6
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.+.-+++.|+.|||||+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3456899999999999864
No 481
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=66.08 E-value=2.3 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.7
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+++.|+.|+|||+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677999999999999875
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.88 E-value=4.4 Score=41.46 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=29.7
Q ss_pred hcCCcEEEEcccCCCcchHhHHHHHHHhhhccccceEEEEecc
Q psy4698 82 VRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPT 124 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~lil~P~ 124 (258)
..|..+++.|++|+|||...+..+...+.. +.+++|+.-.
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te 71 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 71 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEec
Confidence 346789999999999998776666655543 3368888743
No 483
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.79 E-value=1.2 Score=33.37 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.4
Q ss_pred cEEEEcccCCCcchHh
Q psy4698 86 DVIAQAQSGTGKTATF 101 (258)
Q Consensus 86 ~~li~~~tGsGKT~~~ 101 (258)
.+.|.|++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999864
No 484
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=65.77 E-value=2.3 Score=33.70 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.2
Q ss_pred CcEEEEcccCCCcchHhH
Q psy4698 85 NDVIAQAQSGTGKTATFS 102 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~l 102 (258)
..+.+.||+|||||+..-
T Consensus 10 ~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998753
No 485
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.75 E-value=5.3 Score=38.81 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=39.5
Q ss_pred cCcCCCC-C-CHHHHHHHHHCC----CCCCcHHHHHHhhhhhc---CCcEEEEcccCCCcchHhHHHH
Q psy4698 47 ENFDDME-L-SEELLRGIYAYG----FEKPSAIQQRAIIPCVR---GNDVIAQAQSGTGKTATFSISI 105 (258)
Q Consensus 47 ~~~~~~~-~-~~~l~~~l~~~~----~~~~~~~Q~~~~~~l~~---g~~~li~~~tGsGKT~~~l~~~ 105 (258)
++|..++ + ++...+..+... .++++.+-..|+..+.. ...++|.|..|+|||.+.-..+
T Consensus 98 NPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 98 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHH
Confidence 4677775 3 667666655432 23556666777766543 3469999999999998875444
No 486
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=65.48 E-value=47 Score=29.64 Aligned_cols=81 Identities=6% Similarity=0.137 Sum_probs=50.3
Q ss_pred cccceEEEEeccHHHHHHHHHHHHHhcC----CCCceEEEEECCcch--HHHHHHHhcC-Cc---EEEeChHHHHHHHhc
Q psy4698 113 IKECQALILAPTRELAQQIQKVVIALGD----FMSVSCHACIGGTIV--RDDIRKLEAG-AQ---VVVGTPGRVFDMISR 182 (258)
Q Consensus 113 ~~~~~~lil~P~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~-~~---Ilv~Tp~~l~~~l~~ 182 (258)
..+.++||.|+++.-+...+..+.+.+. ...-.+...+|.... ........++ .+ |+|+| +++.
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~- 510 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLT- 510 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTT-
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chhh-
Confidence 3446899999999999999998877542 112224445555433 2223344442 22 66666 2233
Q ss_pred CCCCCCCccEEEEccch
Q psy4698 183 GALSTKQIRMFVLDEAD 199 (258)
Q Consensus 183 ~~~~~~~l~~lVvDE~h 199 (258)
.+++++++.+||++..-
T Consensus 511 ~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 511 TGVDAPTCKNVVLARVV 527 (590)
T ss_dssp TTCCCTTEEEEEEESCC
T ss_pred cCccchheeEEEEEecC
Confidence 34788999999987653
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=65.45 E-value=2 Score=36.37 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcccCCCcchH
Q psy4698 81 CVRGNDVIAQAQSGTGKTAT 100 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~ 100 (258)
+..|.-+.+.||.|+|||+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34677789999999999985
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=65.41 E-value=2.2 Score=33.14 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.5
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+++.|+.|+|||+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEEcCCCCCHHHHH
Confidence 4667899999999999876
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=65.16 E-value=2.1 Score=33.67 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=15.0
Q ss_pred CCcEEEEcccCCCcchHh
Q psy4698 84 GNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 84 g~~~li~~~tGsGKT~~~ 101 (258)
++-+++.|..|||||+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 345899999999999865
No 490
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=65.15 E-value=2.1 Score=35.31 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=15.5
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+.|.|+.|||||+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3456889999999999864
No 491
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=65.07 E-value=2.2 Score=36.12 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.5
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|.-+.+.||.|+|||+..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHH
Confidence 446778999999999999853
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=65.03 E-value=2.5 Score=32.86 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.3
Q ss_pred cCCcEEEEcccCCCcchHh
Q psy4698 83 RGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 83 ~g~~~li~~~tGsGKT~~~ 101 (258)
.|.-+++.|+.|||||+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3667899999999999875
No 493
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=64.91 E-value=2.5 Score=38.34 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 189 QIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 189 ~l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
+-+++++||+-.-+|......+...+..+.++. .+++.+.
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-t~i~itH 548 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGK-TSIIIAH 548 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTS-EEEEESC
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 456999999988888777777777777765544 4444444
No 494
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=64.69 E-value=2.2 Score=38.55 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=27.8
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEEee
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~SAT 229 (258)
-+++++||+-.-+|......+...++.+.++. .+++.+.
T Consensus 496 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-t~i~itH 534 (578)
T 4a82_A 496 PPILILDEATSALDLESESIIQEALDVLSKDR-TTLIVAH 534 (578)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS-EEEEECS
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45999999988777777777777777776554 4444433
No 495
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=64.44 E-value=2.3 Score=36.00 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcccCCCcchHh
Q psy4698 81 CVRGNDVIAQAQSGTGKTATF 101 (258)
Q Consensus 81 l~~g~~~li~~~tGsGKT~~~ 101 (258)
+..|.-+.+.||.|+|||+..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHH
Confidence 346777899999999999853
No 496
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=64.44 E-value=2 Score=32.62 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.9
Q ss_pred hcCCcEEEEcccCCCcchH
Q psy4698 82 VRGNDVIAQAQSGTGKTAT 100 (258)
Q Consensus 82 ~~g~~~li~~~tGsGKT~~ 100 (258)
..|..+++.|++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4556799999999999974
No 497
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=64.31 E-value=4.3 Score=30.43 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHHhCCCCccEEEEE
Q psy4698 190 IRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLS 227 (258)
Q Consensus 190 l~~lVvDE~h~~~~~~~~~~~~~~~~~l~~~~~~i~~S 227 (258)
-.++++||...-++......+..+++.+....++|++|
T Consensus 87 ~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 87 APFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 35899999998888877888888888877777777765
No 498
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=64.23 E-value=31 Score=33.90 Aligned_cols=32 Identities=6% Similarity=0.096 Sum_probs=21.7
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH
Q psy4698 145 SCHACIGGTIVRDDIRKLEAGAQVVVGTPGRV 176 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l 176 (258)
++....++......+..+..++.|+|+|.+..
T Consensus 245 RvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276 (1221)
T ss_dssp SCEEEEESCCCHHHHHHHHSSCCEEEECSCSH
T ss_pred CEEEEEeCcChHHHHHhhCCCeEEEEeccChH
Confidence 34455555555555666678899999998764
No 499
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=64.12 E-value=2.5 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.9
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
+.+++.||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999865
No 500
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=64.09 E-value=5.2 Score=32.89 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=15.1
Q ss_pred CcEEEEcccCCCcchHh
Q psy4698 85 NDVIAQAQSGTGKTATF 101 (258)
Q Consensus 85 ~~~li~~~tGsGKT~~~ 101 (258)
..++|.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999865
Done!