RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4698
(258 letters)
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 190 bits (484), Expect = 2e-61
Identities = 159/218 (72%), Positives = 194/218 (88%), Gaps = 1/218 (0%)
Query: 36 GLIETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGT 95
G+IE+NW+ + ++FDDM LSE LLRGIYAYGFEKPSAIQQRAI+PC++G DVIAQAQSGT
Sbjct: 1 GVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGT 60
Query: 96 GKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIV 155
GKTATF+ISILQQ++ ++K QAL+LAPTRELAQQIQKVV+ALGD+M SCHACIGGT V
Sbjct: 61 GKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 120
Query: 156 RDDIRKLEAG-AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVF 214
R +++KL+ ++VGTPGRVFDM++R LS K I+MFVLDEADEMLSRGFKDQIYD+F
Sbjct: 121 RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIF 180
Query: 215 KHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252
+ LN++ QV+LLSATMP+DVL+V+ KFMRDPI+ILVKK
Sbjct: 181 QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 218
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 181 bits (461), Expect = 4e-58
Identities = 136/213 (63%), Positives = 166/213 (77%), Gaps = 1/213 (0%)
Query: 38 IETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGK 97
I+TN+D V FDDMEL E LLRG++ YGFE+PSAIQQRAI+P + G+DV+AQAQSGTGK
Sbjct: 1 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 60
Query: 98 TATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRD 157
T TFSI+ LQ++D ++K QAL+LAPTRELA QIQKVV+AL M + HACIGGT +
Sbjct: 61 TGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE 120
Query: 158 DIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHL 217
D L AQ+VVGTPGRVFD I R T +I+MF+LDEADEMLS GFK+QIY +F L
Sbjct: 121 DAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 179
Query: 218 NNDVQVILLSATMPADVLDVSMKFMRDPIKILV 250
QV+LLSATMP DVL+V+ KFMR+P++ILV
Sbjct: 180 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 175 bits (444), Expect = 2e-55
Identities = 79/205 (38%), Positives = 128/205 (62%), Gaps = 3/205 (1%)
Query: 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRG-NDVIAQAQSGTGKTATFSISIL 106
NF+++ LS+ +L I GFEKP+ IQ + I + +++AQA++G+GKTA+F+I ++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 107 QQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGA 166
+ V++N +IL PTRELA Q+ + +L ++ GG + I+ L+ A
Sbjct: 65 ELVNENNGIEA-IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 122
Query: 167 QVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILL 226
+VVGTPGR+ D I+RG L+ K ++ F+LDEADEML+ GF + + N D +++L
Sbjct: 123 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLF 182
Query: 227 SATMPADVLDVSMKFMRDPIKILVK 251
SATMP ++L+++ K+M D I K
Sbjct: 183 SATMPREILNLAKKYMGDYSFIKAK 207
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 172 bits (437), Expect = 3e-54
Identities = 142/216 (65%), Positives = 177/216 (81%), Gaps = 1/216 (0%)
Query: 38 IETNWD-HVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTG 96
ET+ + V FD M L E+LLRGIYAYGFEKPSAIQQRAI ++G DVIAQ+QSGTG
Sbjct: 7 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 66
Query: 97 KTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVR 156
KTATFSIS+LQ +D ++E QALILAPTRELA QIQK ++ALGD+M+V CHACIGGT V
Sbjct: 67 KTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVG 126
Query: 157 DDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKH 216
+DIRKL+ G VV GTPGRVFDMI R +L T+ I+M VLDEADEML++GFK+QIYDV+++
Sbjct: 127 EDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 186
Query: 217 LNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKK 252
L QV+L+SAT+P ++L+++ KFM DPI+ILVK+
Sbjct: 187 LPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR 222
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 150 bits (380), Expect = 7e-46
Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Query: 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQ 108
F D L ELLR I GFE PS +Q I + G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 109 VDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGG-TIVRDDIRKLEA-GA 166
++ + L++ TRELA QI K +M A G ++ D L+
Sbjct: 63 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 122
Query: 167 QVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-GFKDQIYDVFKHLNNDVQVIL 225
+VVGTPGR+ + +L+ K I+ F+LDE D+ML + + + ++F+ ++ QV++
Sbjct: 123 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 182
Query: 226 LSATMPADVLDVSMKFMRDPIKILV 250
SAT+ ++ V KFM+DP++I V
Sbjct: 183 FSATLSKEIRPVCRKFMQDPMEIFV 207
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 151 bits (382), Expect = 8e-46
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 13/225 (5%)
Query: 39 ETNWDHVAENFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKT 98
+ + +V ENFD+++L + I +++P+ IQ+ AI + D++A AQ+G+GKT
Sbjct: 13 DYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKT 72
Query: 99 ATFSISILQQVDQN---------IKECQALILAPTRELAQQIQKVVIALGDFMSVSCHAC 149
A F I I+ + + LILAPTRELA QI +
Sbjct: 73 AAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVV 132
Query: 150 IGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQ 209
GG IR+++ G ++V TPGR+ D I + +S + + VLDEAD ML GF+ Q
Sbjct: 133 YGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 192
Query: 210 IYDVFKHLN----NDVQVILLSATMPADVLDVSMKFMRDPIKILV 250
I + + N + Q ++ SAT P ++ ++ F+ + I + V
Sbjct: 193 IRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 145 bits (365), Expect = 9e-44
Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 1/202 (0%)
Query: 48 NFDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQ 107
F+D L ELL GI+ G+EKPS IQ+ +I + G D++A+A++GTGK+ + I +L+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 108 QVDQNIKECQALILAPTRELAQQI-QKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGA 166
++D QA+++ PTRELA Q+ Q + A GGT +RDDI +L+
Sbjct: 64 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTV 123
Query: 167 QVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILL 226
VV+ TPGR+ D+I +G ++M VLDEAD++LS+ F + D+ L + Q++L
Sbjct: 124 HVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLY 183
Query: 227 SATMPADVLDVSMKFMRDPIKI 248
SAT P V + P +I
Sbjct: 184 SATFPLSVQKFMNSHLEKPYEI 205
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 138 bits (348), Expect = 4e-41
Identities = 90/204 (44%), Positives = 123/204 (60%)
Query: 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQ 108
F+D L ELL GI+ GFEKPS IQ+ AI + G D++A+A++GTGKTA F I L++
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 109 VDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQV 168
V + + QALI+ PTRELA Q +VV LG +SC GGT +RDDI +L +
Sbjct: 63 VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHI 122
Query: 169 VVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSA 228
+VGTPGRV D+ SR +F++DEAD+MLSR FK I + L Q +L SA
Sbjct: 123 LVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSA 182
Query: 229 TMPADVLDVSMKFMRDPIKILVKK 252
T P V + +K + P +I + +
Sbjct: 183 TFPLTVKEFMVKHLHKPYEINLME 206
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 123 bits (308), Expect = 3e-35
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Query: 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQ 108
F ++ I F KP+ IQ+R I +RG ++ Q+Q+GTGKT + + I+++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 109 VDQNIKECQALILA----PTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEA 164
+ E QA+I A ++ + K+ + IGGT + + KL
Sbjct: 63 IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV 122
Query: 165 GAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVI 224
+V+GTPGR+ D I AL + V+DEAD ML GF + + + D+Q++
Sbjct: 123 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQML 182
Query: 225 LLSATMPADVLDVSMKFMRDPIKILV 250
+ SAT+P + K+M +P + V
Sbjct: 183 VFSATIPEKLKPFLKKYMENPTFVHV 208
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 95.7 bits (237), Expect = 2e-24
Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 28/225 (12%)
Query: 49 FDDMELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQ 108
F + L +E + +P AIQ+ +R A A +G GKT+ L
Sbjct: 24 FPEDFLLKEF-VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
Query: 109 VDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVS------CHACIGGTIVRDDIRKL 162
+ + ++ PT L Q + + + V + +++ +
Sbjct: 83 ALKG---KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQN 139
Query: 163 EAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSR-----------GFKDQIY 211
++V+ T + +D+ D +L GF +
Sbjct: 140 LRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 195
Query: 212 DVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEELT 256
+++ +AT + R + + +T
Sbjct: 196 TKSWVGEARGCLMVSTATAKKGKKA---ELFRQLLNFDIGSSRIT 237
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 94.7 bits (234), Expect = 2e-24
Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 17/207 (8%)
Query: 49 FDDMELSE---ELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISI 105
+ + L ++L+ + G+++ Q+ I + G D + +G GK+ + I
Sbjct: 4 AEVLNLESGAKQVLQETF--GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA 61
Query: 106 LQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165
L ++++P L + + A G + +
Sbjct: 62 LLLNG------LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ 115
Query: 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQ----IYDVFKHLNNDV 221
+++ P R+ L+ + +DEA + G + + +
Sbjct: 116 IRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175
Query: 222 QVILLSATMPADVLDVSMKF--MRDPI 246
+ L+AT ++ + DP+
Sbjct: 176 PFMALTATADDTTRQDIVRLLGLNDPL 202
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 94.3 bits (233), Expect = 4e-24
Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 12/189 (6%)
Query: 48 NFDDM--ELSEELLRGIYAYGFEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISI 105
+++ +S + + G E+ Q A+ G +++ + GKT +++
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 106 LQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG 165
+++ + K + P R LA + + + + +
Sbjct: 62 VREAIKGGKSLY---VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD---- 114
Query: 166 AQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEMLSRGFKDQ---IYDVFKHLNNDVQ 222
++V T + +I A K + V+DE + S + + +N ++
Sbjct: 115 CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALR 174
Query: 223 VILLSATMP 231
VI LSAT P
Sbjct: 175 VIGLSATAP 183
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 87.7 bits (216), Expect = 5e-21
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 14/164 (8%)
Query: 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFM 142
+ I G GKT + +I+++ + + + LILAPTR +A ++++ +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIK--RGLRTLILAPTRVVAAEMEEAL------- 58
Query: 143 SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML 202
+ IR G ++V F M + + ++DEA
Sbjct: 59 -----RGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTD 113
Query: 203 SRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPI 246
+ Y + + I ++AT P
Sbjct: 114 PASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMD 157
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 76.4 bits (186), Expect = 1e-17
Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 3/180 (1%)
Query: 75 QRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKV 134
Q I + + + +G GKT + ++ + + +LAPT+ L Q +
Sbjct: 14 QEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL--MLAPTKPLVLQHAES 71
Query: 135 VIALGDFMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFV 194
L + A G + + A+V+V TP + + + G +S + + + V
Sbjct: 72 FRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRISLEDVSLIV 130
Query: 195 LDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSATMPADVLDVSMKFMRDPIKILVKKEE 254
DEA + I +K + VI L+A+ + + I+ + + E
Sbjct: 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSE 190
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 43.6 bits (102), Expect = 8e-06
Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 67 FEKPSAIQQRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRE 126
+K + + R + + + + Q G+GKT ++IL + + + +
Sbjct: 87 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAI 146
Query: 127 LAQQIQKVVIALGDFMSVSCHACIGGTIVRDDIRKLEAG-AQVVVGTPGRVFDMISRGAL 185
+ + + + L G VV+GT + + +
Sbjct: 147 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH---- 202
Query: 186 STKQIRMFVLDEADEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229
K + + ++DE G K + + + V +++SAT
Sbjct: 203 -FKNLGLVIIDEQHRF---GVKQR--EALMNKGKMVDTLVMSAT 240
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 41.2 bits (95), Expect = 2e-05
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 83 RGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGDFM 142
+G + G GKT F IL + + ++ L++ + F
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTL-VLAPTRVVLSEMKEAFHGLDVKFH 64
Query: 143 SVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGALSTKQIRMFVLDEADEML 202
+ + A G V D + +++ T +++I ++DEA +
Sbjct: 65 TQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVI-------------IMDEAHFLD 111
Query: 203 SRGFKDQIYDVFKHLNNDVQVILLSATMP 231
+ + + N+ IL++AT P
Sbjct: 112 PASIAARGWAAHRARANESATILMTATPP 140
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 38.6 bits (89), Expect = 4e-04
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 81 CVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQKVVIALGD 140
D + G GKT + VD + Q +L PT LAQQ
Sbjct: 73 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTTLLAQQHYDNFRDRFA 129
Query: 141 FMSVSCHACIGGTIVRDDIRKLEAGAQVVVGTPGRVFDMISRGA--LSTKQIRMFVLDEA 198
V ++ + L +V G + + K + + ++DE
Sbjct: 130 NWPVRIEMISRFRSAKEQTQILA---EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 186
Query: 199 DEMLSRGFKDQIYDVFKHLNNDVQVILLSAT 229
G + + + K + +V ++ L+AT
Sbjct: 187 HR---FGVRHK--ERIKAMRANVDILTLTAT 212
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 27.4 bits (60), Expect = 1.8
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 69 KPSAIQQRAIIPCVRG-----NDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAP 123
+P Q +AI V G +GTGKT T S +++ QV++ L++A
Sbjct: 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQVNKPT-----LVIAH 64
Query: 124 TRELAQQIQ 132
+ LA Q+
Sbjct: 65 NKTLAGQLY 73
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA
{Salmonella typhimurium [TaxId: 90371]}
Length = 157
Score = 26.4 bits (58), Expect = 2.7
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 182 RGALSTKQIRMFVLDEADEMLSRGF--KDQIYDVFKHLNNDVQVILLSATMPADVLDV 237
+ L+ + M VLDE M++ + +++ VI+ D+LD+
Sbjct: 87 KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 144
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel
(Anguilla anguilla) [TaxId: 7936]}
Length = 158
Score = 25.5 bits (55), Expect = 4.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 14 NGPAE---NEAEQPAYNGPPGMAVDGLIETNWDH 44
G A + A N A+DG ++N+ H
Sbjct: 14 RGKATQSAQLRGEHAANSEASNAIDGNRDSNFYH 47
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 25.3 bits (55), Expect = 7.6
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 75 QRAIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQALILAPTRELAQQIQK 133
A+IP RG + TGKTA + +IL Q QN+ I +AQ +
Sbjct: 58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTN 116
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.1 bits (55), Expect = 9.4
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 77 AIIPCVRGNDVIAQAQSGTGKTATFSISILQQVDQNIKECQ------ALILAPTRELAQQ 130
+ P +G + +G GKT ++ ++ N+ + A + TRE
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTV-----LIMELINNVAKAHGGYSVFAGVGERTREGNDL 115
Query: 131 IQKVV 135
+++
Sbjct: 116 YHEMI 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,051
Number of extensions: 44421
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 26
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)