BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4699
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 334 bits (857), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/314 (51%), Positives = 209/314 (66%), Gaps = 3/314 (0%)
Query: 88 RGHLEMENTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEA 147
RG +E ++ Q P H +GTLGVIT+ +KIRP P QK+GS+ FPNFE
Sbjct: 342 RGVIE-KSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQ 400
Query: 148 GVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRD 206
GV CLREIAK+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF
Sbjct: 401 GVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDP 460
Query: 207 DEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 266
+++ AT+LFEGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +
Sbjct: 461 NQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLE 520
Query: 267 YYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSIKFFETS-CRVTQTYDAGSCIYFY 325
YY IG+SFETS PWD+ V LC NVK+R+ +EC ++F S CRVTQTYDAG+CIYFY
Sbjct: 521 YYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFY 580
Query: 326 FGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYR 385
F FN R +P + AR+EI+A GGSLSHHHGVGK+R W E +S VG + +
Sbjct: 581 FAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLK 640
Query: 386 STKQALDPNNMFAD 399
S K +DP N+F +
Sbjct: 641 SVKDYVDPTNIFGN 654
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 445 AVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLL 495
A GSLSHHHGVGK+R W E +S VG + +S K +DP N+F + NLL
Sbjct: 608 ANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/314 (50%), Positives = 209/314 (66%), Gaps = 3/314 (0%)
Query: 88 RGHLEMENTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEA 147
RG +E ++ Q P H +GTLGVIT+ +KIRP P QK+GS+ FPNFE
Sbjct: 342 RGVIE-KSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQ 400
Query: 148 GVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRD 206
GV CLREIAK+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF
Sbjct: 401 GVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDP 460
Query: 207 DEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 266
+++ AT+LFEGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +
Sbjct: 461 NQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLE 520
Query: 267 YYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSIKFFETS-CRVTQTYDAGSCIYFY 325
YY IG+SFETS PWD+ V LC NVK+R+ +EC ++F S CRVTQTYDAG+CI+FY
Sbjct: 521 YYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIFFY 580
Query: 326 FGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYR 385
F FN R +P + AR+EI+A GGSLSHHHGVGK+R W E +S VG + +
Sbjct: 581 FAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLK 640
Query: 386 STKQALDPNNMFAD 399
S K +DP N+F +
Sbjct: 641 SVKDYVDPTNIFGN 654
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 445 AVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLL 495
A GSLSHHHGVGK+R W E +S VG + +S K +DP N+F + NLL
Sbjct: 608 ANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 160/314 (50%), Positives = 208/314 (66%), Gaps = 3/314 (0%)
Query: 88 RGHLEMENTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEA 147
RG +E ++ Q P H +GTLGVIT+ +KIRP P QK+GS+ FPNFE
Sbjct: 342 RGVIE-KSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQ 400
Query: 148 GVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRD 206
GV CLREIAK+RC P+SI L+DN Q + G +P DGLKK Y+TK GF
Sbjct: 401 GVACLREIAKQRCAPASIHLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDP 460
Query: 207 DEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 266
+++ AT+LFEGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +
Sbjct: 461 NQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLE 520
Query: 267 YYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSIKFFETS-CRVTQTYDAGSCIYFY 325
YY IG+SFETS PWD+ V LC NVK+R+ +EC ++F S CRVTQTYDAG+CIYFY
Sbjct: 521 YYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFY 580
Query: 326 FGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYR 385
F FN R +P + AR+EI+A GGSLSHHHGVGK+R W E +S VG + +
Sbjct: 581 FAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLK 640
Query: 386 STKQALDPNNMFAD 399
S K +DP N+F +
Sbjct: 641 SVKDYVDPTNIFGN 654
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 445 AVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLL 495
A GSLSHHHGVGK+R W E +S VG + +S K +DP N+F + NLL
Sbjct: 608 ANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 6/284 (2%)
Query: 115 QGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLK 174
+GTLG+IT+ V+K+ P+ ++ LFP F V L++I P+ IR+ D + +
Sbjct: 298 EGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQ 357
Query: 175 AGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA 234
++P G + T + K Y+ I F +C + + FEG + V + ++ I
Sbjct: 358 LSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDIL 417
Query: 235 KRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 294
+ G + G+ Y + YIRDF D+ D ET+V + L + K+
Sbjct: 418 SKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTF 477
Query: 295 TQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQ--HCARDEII 352
+ I + ++ TY G C+YF F ++ EN D Y++ D I
Sbjct: 478 VKHFKDQGIPAW-ICAHISHTYTNGVCLYFIFA--SKQNENKDMA-QYIEAKKLMTDIIF 533
Query: 353 ACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNM 396
GGSLSHHHGVG W + ++ + +YRS K+ +DP ++
Sbjct: 534 KYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDI 577
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 448 GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNV 488
GSLSHHHGVG W + ++ + +YRS K+ +DP ++
Sbjct: 537 GSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDI 577
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
Length = 448
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 14/85 (16%)
Query: 12 KINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATGD 63
K ADKNDK+VKDLV LL+ET+LL PQ HA RI+RMIKLGLGI+++D T D
Sbjct: 359 KAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDD--PTAD 416
Query: 64 DVKAG---DIPVAEGEAEDASRMEE 85
D A ++P EG+ +D SRMEE
Sbjct: 417 DTSAAVTEEMPPLEGD-DDTSRMEE 440
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 8/51 (15%)
Query: 12 KINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIE 54
++ AD+NDKAVKDLV LLF+TSLL P +A RI+RMIKLGL ++
Sbjct: 375 RVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLD 425
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 8/42 (19%)
Query: 19 DKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLG 52
DK VKDL LL+ET+LL P A+RI+R+I LGL
Sbjct: 364 DKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 405
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 8/42 (19%)
Query: 19 DKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLG 52
DK VKDL LL+ET+LL P A+RI+R+I LGL
Sbjct: 636 DKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 12 KINADKNDKAVKDLVNLLFETS------LLPQVHA--ARIHRMIKLGLGIEDEDEV 59
++ D++DK V DL +LFET+ LLP A RI RM++L L I+ + +V
Sbjct: 385 RVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKV 440
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 351 IIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
++ GGS+S HG+G + E + +EL RS K LDP+ + GK
Sbjct: 424 VLRLGGSISAEHGIGVXKRDELAEVKDKTAIELXRSIKALLDPHGIXNPGK 474
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 446 VSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLL 495
+ GS+S HG+G + E + +EL RS K LDP+ + G ++
Sbjct: 427 LGGSISAEHGIGVXKRDELAEVKDKTAIELXRSIKALLDPHGIXNPGKVV 476
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 37 QVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIP-VAEGEAEDASRMEE---------G 86
Q AA + R+ L LG + + AG +A G A D + E
Sbjct: 130 QEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXN 189
Query: 87 LRGHLEMENTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRC 134
L L+ +NT + D +GTLG+IT LK+ P+PR
Sbjct: 190 LLSKLKKDNTGYDLRDLFIGA-------EGTLGIITAATLKLFPKPRA 230
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 12 KINADKNDKAVKDLVNLLFETS------LLPQVHA--ARIHRMIKLGLGIE 54
++ D++DK V DL +LFET+ LLP A RI RM++L L I+
Sbjct: 612 RVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNID 662
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex
pdb|3T5V|E Chain E, Sac3:thp1:sem1 Complex
Length = 455
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 351 IIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQAL-DPNNMFADGKEEMDQKQF 409
II G L H RSH + H+S + L+ S K + ++ GK+ +
Sbjct: 120 IINLAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRI----- 174
Query: 410 SDLLYSVYKLTMDHYP-EGPQSCRHIFKTLK 439
LLY V KL ++ E PQ C +IFK +
Sbjct: 175 --LLYLVNKLNNIYFRIESPQLCSNIFKNFQ 203
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 120/335 (35%), Gaps = 78/335 (23%)
Query: 14 NADKNDKAVKDLVNLLFETSLLPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVA 73
NA ++A K +V L+ + L P I RM+ D + TG V A I ++
Sbjct: 59 NATDPEEAFKSMVPLVTDVELEPY-----IKRMVD-----GDTSPILTGHPVPA--ISLS 106
Query: 74 EGEAEDASR--------MEEGL---RGHLEMENTQHPNEDQA----FSEHAQSTVEQGTL 118
G ++ + ME L R N P +D F ++ + G +
Sbjct: 107 SGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGV 166
Query: 119 GVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQ------ 172
V T R PNF+AG+K I C P + +V
Sbjct: 167 PVGTATTNVYRN------------PNFKAGMK---SITSPSCSPDEVIFSPDVHQALYCH 211
Query: 173 LKAGQFFRPDPGYL-ELLTDGL-------KKLYVTKILGFRDDEM----------CAATV 214
L +G FR Y+ + GL ++++ + +D + A +
Sbjct: 212 LLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITVPSVRTAMSK 271
Query: 215 LFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR------RGYMLTYIIAYIRDFACDYY 268
L +PE + K S++ YG IPA N + G M Y + +R +A D
Sbjct: 272 LLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPY-VPKLRHYAGDLP 330
Query: 269 FIGDSFETSVPWDKTVLLCINVKKRLTQECTALSI 303
+ + +S W + NV RL+ E ++
Sbjct: 331 LVSHDYGSSEGW-----IAANVTPRLSPEEATFAV 360
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 307 ETSCRVTQTYD-AGSC-IYFYFGFNARDFENPDQTLTYLQHCA--RDEIIACGGSLSHHH 362
E + +VT T D GS + +F A DF N D+TLT + D+I+ G ++ + +
Sbjct: 554 EKTGQVTGTSDFVGSVKLNDHFALAAMDFTNWDRTLTAQKGWVILNDKIVFLGSNIKNTN 613
Query: 363 GVGKIRSHW----------YPEHVSQVGLELYR-STKQALDPNNMFADGKE 402
G+G + + Y +V+ ++L + S++Q D ++F + KE
Sbjct: 614 GIGNVSTTIDQRKDDSKTPYTTYVNGKTIDLKQASSQQFTDTKSVFLESKE 664
>pdb|3GKW|L Chain L, Crystal Structure Of The Fab Fragment Of Nimotuzumab. An
Anti- Epidermal Growth Factor Receptor Antibody
Length = 219
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 230 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDYYFIGDSFETSVPWDKTVLLC 287
IY ++ R+ G+P+ S G T+ I+ ++ D A Y F + VPW
Sbjct: 53 IYKVSNRFSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCFQ----YSHVPW----TFG 104
Query: 288 INVKKRLTQECTALSIKFFETS 309
K ++T+E A S+ F S
Sbjct: 105 QGTKLQITREVAAPSVFIFPPS 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,038,757
Number of Sequences: 62578
Number of extensions: 707251
Number of successful extensions: 1834
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1806
Number of HSP's gapped (non-prelim): 26
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)