Query psy4699
Match_columns 500
No_of_seqs 362 out of 2899
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 23:34:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 100.0 2.1E-50 4.5E-55 386.7 20.5 333 70-402 263-612 (613)
2 PLN02805 D-lactate dehydrogena 100.0 2.4E-42 5.2E-47 365.7 27.8 302 69-405 229-551 (555)
3 TIGR00387 glcD glycolate oxida 100.0 2.3E-39 4.9E-44 336.1 25.7 297 70-401 96-413 (413)
4 PRK11230 glycolate oxidase sub 100.0 1.7E-38 3.7E-43 334.8 26.7 301 70-405 154-474 (499)
5 KOG1232|consensus 100.0 1.1E-33 2.4E-38 271.4 17.3 297 67-403 185-511 (511)
6 COG0277 GlcD FAD/FMN-containin 100.0 7.1E-27 1.5E-31 247.2 25.5 301 69-404 128-457 (459)
7 PF02913 FAD-oxidase_C: FAD li 99.9 2.2E-28 4.7E-33 236.9 7.9 241 131-402 1-248 (248)
8 KOG1231|consensus 99.9 1.2E-23 2.7E-28 207.4 3.6 305 70-404 166-498 (505)
9 PRK11282 glcE glycolate oxidas 99.9 3.1E-21 6.6E-26 193.8 17.9 242 69-403 91-349 (352)
10 PLN02805 D-lactate dehydrogena 99.7 4.8E-17 1E-21 173.1 9.8 145 336-497 404-551 (555)
11 KOG1232|consensus 99.7 3.4E-16 7.3E-21 151.4 10.0 142 335-495 369-511 (511)
12 PRK11183 D-lactate dehydrogena 99.6 4.1E-15 8.9E-20 153.7 16.6 108 70-178 142-313 (564)
13 PF02913 FAD-oxidase_C: FAD li 99.6 5.4E-16 1.2E-20 150.0 1.8 110 379-494 139-248 (248)
14 PRK11230 glycolate oxidase sub 99.5 1.1E-14 2.5E-19 154.1 9.8 111 380-496 363-473 (499)
15 TIGR00387 glcD glycolate oxida 99.5 8E-14 1.7E-18 145.1 13.5 141 336-493 272-413 (413)
16 PLN02441 cytokinin dehydrogena 99.5 1.4E-12 3E-17 137.3 18.8 305 70-401 169-515 (525)
17 COG0277 GlcD FAD/FMN-containin 99.0 8.1E-10 1.8E-14 117.0 10.3 146 337-497 312-458 (459)
18 KOG0020|consensus 99.0 3.7E-10 8.1E-15 113.1 6.7 72 5-76 690-769 (785)
19 KOG1233|consensus 98.9 7E-09 1.5E-13 101.4 10.2 159 336-495 428-613 (613)
20 TIGR01679 bact_FAD_ox FAD-link 98.6 7.4E-07 1.6E-11 93.0 14.4 85 70-157 104-199 (419)
21 TIGR01676 GLDHase galactonolac 98.5 1.3E-05 2.9E-10 84.9 20.8 87 69-158 156-253 (541)
22 KOG1231|consensus 98.5 1.2E-07 2.5E-12 95.2 5.0 69 425-496 430-498 (505)
23 TIGR01678 FAD_lactone_ox sugar 98.4 1.3E-05 2.9E-10 83.9 19.0 86 69-157 109-205 (438)
24 PF00183 HSP90: Hsp90 protein; 98.2 1.3E-06 2.8E-11 93.1 5.0 52 6-57 442-501 (531)
25 KOG0019|consensus 98.2 1.9E-06 4.2E-11 89.5 4.8 53 4-57 591-651 (656)
26 PRK11282 glcE glycolate oxidas 97.9 1.4E-05 3E-10 80.9 6.3 58 436-496 293-350 (352)
27 TIGR01677 pln_FAD_oxido plant- 97.7 5.3E-05 1.1E-09 81.4 5.8 86 69-156 131-234 (557)
28 PTZ00272 heat shock protein 83 97.6 8.8E-05 1.9E-09 81.2 6.5 54 5-58 614-675 (701)
29 PTZ00130 heat shock protein 90 97.0 0.00071 1.5E-08 74.6 5.1 53 5-57 702-762 (814)
30 PLN02465 L-galactono-1,4-lacto 96.4 0.0057 1.2E-07 65.8 6.6 86 69-157 191-287 (573)
31 PF09265 Cytokin-bind: Cytokin 93.6 0.099 2.2E-06 51.1 4.8 135 258-401 129-278 (281)
32 KOG1262|consensus 91.0 0.49 1.1E-05 47.6 5.9 88 68-155 153-252 (543)
33 PRK14652 UDP-N-acetylenolpyruv 89.6 0.33 7.1E-06 48.4 3.6 56 70-132 130-196 (302)
34 PF09265 Cytokin-bind: Cytokin 88.8 0.57 1.2E-05 45.9 4.5 65 425-493 213-278 (281)
35 PLN02441 cytokinin dehydrogena 88.4 0.84 1.8E-05 49.0 5.9 68 427-497 452-520 (525)
36 PLN00107 FAD-dependent oxidore 87.6 3.2 7E-05 39.9 8.6 121 273-398 64-195 (257)
37 PF04030 ALO: D-arabinono-1,4- 86.8 1.5 3.1E-05 42.7 6.1 114 272-398 126-252 (259)
38 PF08031 BBE: Berberine and be 86.8 0.18 4E-06 35.2 -0.2 29 462-491 14-42 (47)
39 TIGR01677 pln_FAD_oxido plant- 79.1 8.6 0.00019 41.8 8.7 114 274-398 372-501 (557)
40 PRK14653 UDP-N-acetylenolpyruv 76.3 1.3 2.9E-05 44.0 1.5 57 70-132 126-194 (297)
41 PF00076 RRM_1: RNA recognitio 72.2 4.6 9.9E-05 29.7 3.3 52 101-156 9-60 (70)
42 KOG4730|consensus 71.9 13 0.00027 38.7 7.1 96 42-147 125-231 (518)
43 PF09330 Lact-deh-memb: D-lact 71.1 6.3 0.00014 38.2 4.5 41 137-177 1-42 (291)
44 PLN02465 L-galactono-1,4-lacto 66.0 40 0.00086 36.8 9.8 56 340-398 499-562 (573)
45 PF14259 RRM_6: RNA recognitio 62.3 16 0.00035 27.0 4.5 47 105-155 13-59 (70)
46 PRK13905 murB UDP-N-acetylenol 61.5 5.7 0.00012 39.5 2.4 56 70-132 125-193 (298)
47 PF08031 BBE: Berberine and be 60.4 6.8 0.00015 27.2 1.9 23 375-398 19-41 (47)
48 smart00360 RRM RNA recognition 44.4 28 0.0006 24.8 3.2 52 100-155 6-58 (71)
49 smart00361 RRM_1 RNA recogniti 43.4 40 0.00088 25.2 4.0 40 117-156 15-58 (70)
50 smart00362 RRM_2 RNA recogniti 42.2 36 0.00078 24.3 3.6 52 99-155 8-59 (72)
51 PRK11183 D-lactate dehydrogena 41.3 30 0.00065 37.3 3.9 51 432-493 501-551 (564)
52 PF09330 Lact-deh-memb: D-lact 40.7 42 0.00092 32.7 4.4 51 341-401 232-282 (291)
53 PF13893 RRM_5: RNA recognitio 36.9 60 0.0013 22.8 3.9 36 117-156 7-42 (56)
54 PLN03134 glycine-rich RNA-bind 36.1 49 0.0011 29.0 3.9 55 97-155 41-96 (144)
55 TIGR01661 ELAV_HUD_SF ELAV/HuD 34.2 42 0.00092 33.8 3.7 47 106-156 285-332 (352)
56 PF08077 Cm_res_leader: Chlora 27.2 57 0.0012 16.9 1.6 15 112-126 2-16 (17)
57 cd00590 RRM RRM (RNA recogniti 26.5 1.1E+02 0.0023 21.8 3.9 47 105-155 14-60 (74)
58 PF05554 Novirhabdo_Nv: Viral 25.7 65 0.0014 25.8 2.5 32 466-499 10-41 (122)
59 TIGR01659 sex-lethal sex-letha 25.7 81 0.0018 32.1 4.0 50 103-156 206-256 (346)
60 KOG0105|consensus 25.3 66 0.0014 29.4 2.8 48 106-161 22-69 (241)
61 TIGR01628 PABP-1234 polyadenyl 25.1 70 0.0015 34.8 3.6 41 116-156 307-347 (562)
62 KOG0114|consensus 24.8 78 0.0017 26.2 2.8 54 97-156 25-78 (124)
63 KOG0122|consensus 21.6 1.1E+02 0.0024 29.3 3.6 56 97-156 196-252 (270)
64 PF12041 DELLA: Transcriptiona 20.5 1.3E+02 0.0028 23.0 3.1 43 2-48 19-62 (73)
No 1
>KOG1233|consensus
Probab=100.00 E-value=2.1e-50 Score=386.68 Aligned_cols=333 Identities=48% Similarity=0.858 Sum_probs=312.2
Q ss_pred CCCccCccccccCccccccccee--Ee-------------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecCcc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE--ME-------------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRC 134 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~--vV-------------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~ 134 (500)
+|+|||+++.+|||+.-+||.++ || ...+|+-++|||+.+++.|||||||||||+|+|+.|+|+.
T Consensus 263 STlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~ 342 (613)
T KOG1233|consen 263 STLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEV 342 (613)
T ss_pred ecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhh
Confidence 79999999999999999999998 33 2346778999999999999999999999999999999999
Q ss_pred eeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCC-CcchhhhhhhhhhhhhhhhcCCCCcccceee
Q psy4699 135 QKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAAT 213 (500)
Q Consensus 135 ~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (500)
.++..+.||++++...++++++..+..|.++++||.......+...|. ..+|.++++.+++.|++.+++++..+.|.+.
T Consensus 343 ~ryGS~aFPNFEqGV~f~REvA~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaAT 422 (613)
T KOG1233|consen 343 KRYGSFAFPNFEQGVNFFREVAIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAAT 422 (613)
T ss_pred hhcCccccCcHHHHHHHHHHHHHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhh
Confidence 999999999999999999999999999999999999988877777774 5899999999999999999999999989899
Q ss_pred EEEecCHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhhhhhHHHHhhhhccccccccceeeeeeccchHHHHHHHHHH
Q psy4699 214 VLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKR 293 (500)
Q Consensus 214 l~~eg~~~~v~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~ 293 (500)
+.+||+.+.|+++.+++-+|++++++..-+.+...+++.+.|...|+||+++..+.+...+++++||++...+++.++++
T Consensus 423 llfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer 502 (613)
T KOG1233|consen 423 LLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKER 502 (613)
T ss_pred heecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeee-eeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCccccccc
Q psy4699 294 LTQECTALSIKFFETS-CRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWY 372 (500)
Q Consensus 294 ~~~~~~~~g~~~~~~~-~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~~ 372 (500)
+.+.|.+.|+.+.+++ ||++..|+.|.|+||+++|+.++..++++.++++..+.++.+.+.||++|++||+|..+..|+
T Consensus 503 ~~rEck~~gv~~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIlacGGSlSHHHGVGKiRkqW~ 582 (613)
T KOG1233|consen 503 MKRECKAQGVTHPVLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEILACGGSLSHHHGVGKIRKQWM 582 (613)
T ss_pred HHHHHHhcCCCcccccceeEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhcCCcccccccchHHHHHHH
Confidence 9999999999998888 999999999999999999998877889999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHhcCCCCcccCCCc
Q psy4699 373 PEHVSQVGLELYRSTKQALDPNNMFADGKE 402 (500)
Q Consensus 373 ~~~~~~~~~~~~~~~K~~~dP~~llnpgk~ 402 (500)
....+.....+++++|+.+||++|+..+.+
T Consensus 583 ~~~~~~vG~~llka~K~~lDP~NIFa~~NL 612 (613)
T KOG1233|consen 583 LTTNGAVGIALLKAIKSELDPANIFASANL 612 (613)
T ss_pred HhhhhhHhHHHHHHHHHhcChhhhcccccc
Confidence 988888899999999999999999886554
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.4e-42 Score=365.73 Aligned_cols=302 Identities=18% Similarity=0.183 Sum_probs=242.6
Q ss_pred CCCCccCccccccCccccccccee-------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecC
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P 132 (500)
.+++||+++++++|..+.+||.++ || +++..|+++||||.++|+||||||||||++||||.|+|
T Consensus 229 ~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P 308 (555)
T PLN02805 229 GATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIP 308 (555)
T ss_pred ccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCC
Confidence 368999999999999999999987 44 34556788999999999999999999999999999999
Q ss_pred cceeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCccccee
Q psy4699 133 RCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAA 212 (500)
Q Consensus 133 ~~~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (500)
+....+++.|+|+++|.++++++..+++.|+++|+||+..++.+.... +...+..+.+
T Consensus 309 ~~~~~~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~----------------------~~~~p~~~~L 366 (555)
T PLN02805 309 QHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMAN----------------------GKNLPEAPTL 366 (555)
T ss_pred cceEEEEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhc----------------------CCCCCcceEE
Confidence 999999999999999999999998889999999999999887543210 1111122356
Q ss_pred eEEEecCHHHHHHHHHHHHHHHHHcCCCCC----CccchhhhhhhhhhH-HHHhhhhccccccccceeeeeeccchHHHH
Q psy4699 213 TVLFEGDPEDVKNNEDKIYSIAKRYGGIPA----GESNGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLC 287 (500)
Q Consensus 213 ~l~~eg~~~~v~~~~~~l~~i~~~~~~~~~----~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~ 287 (500)
++.++|+.+.++.+.+.+.+++++.++... ..++..+.|..|... +...... ++......|++||++++++++
T Consensus 367 l~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~--~~~~~~~~DvaVP~s~L~e~i 444 (555)
T PLN02805 367 MFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWKIRKEALWACFAME--PKYEAMITDVCVPLSHLAELI 444 (555)
T ss_pred EEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcC--CCCceeEEEEEEEHHHHHHHH
Confidence 677889877787788888999888876431 223445678877643 2222211 222234679999999999999
Q ss_pred HHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCcc
Q psy4699 288 INVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKI 367 (500)
Q Consensus 288 ~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~ 367 (500)
+.+ +++++++++...+|| |++++ ++|+.+.++.. ++++.++++++.+.+.+.+.++||++|+|||+|+.
T Consensus 445 ~~~----~~~~~~~~~~~~~~g----HaGdG--nlH~~i~~~~~-~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~ 513 (555)
T PLN02805 445 SRS----KKELDASPLVCTVIA----HAGDG--NFHTIILFDPS-QEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTG 513 (555)
T ss_pred HHH----HHHHHHcCCeEEEEE----EcCCC--cEEEEeccCCC-CHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChh
Confidence 865 456678998887777 99774 48888766533 23345567888999999999999999999999999
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccC
Q psy4699 368 RSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMD 405 (500)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~ 405 (500)
|.+|+..++++..+++|+++|+.|||++||||||+++.
T Consensus 514 k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 514 KMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 99999999999999999999999999999999999853
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=2.3e-39 Score=336.11 Aligned_cols=297 Identities=19% Similarity=0.254 Sum_probs=237.7
Q ss_pred CCCccCccccccCccccccccee-------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecCc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPR 133 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~ 133 (500)
+++||+++++++|+.+.+||.++ || +.+.+|+++||||.++|+||||||||||++||||.|.|+
T Consensus 96 ~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~ 175 (413)
T TIGR00387 96 STIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPE 175 (413)
T ss_pred ceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCC
Confidence 78999999999999999999987 44 455678899999999999999999999999999999999
Q ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcccceee
Q psy4699 134 CQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAAT 213 (500)
Q Consensus 134 ~~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (500)
.+..+++.|+|+++++++++++.++++.|+++|++|...+..+.+... .+.+.+..+.++
T Consensus 176 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~~~~~~~~~~~~--------------------~~~p~~~~~~l~ 235 (413)
T TIGR00387 176 NIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVEDISG--------------------IGLPKDAGAILL 235 (413)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCHHHHHHHHHhcC--------------------CCCCCCCceEEE
Confidence 999999999999999999999999999999999999998875432100 012222223466
Q ss_pred EEEecCHHHHHHHHHHHHHHHHHcCCCCC----Cccchhhhhhhhhh-HHHHhhhhccccccccceeeeeeccchHHHHH
Q psy4699 214 VLFEGDPEDVKNNEDKIYSIAKRYGGIPA----GESNGRRGYMLTYI-IAYIRDFACDYYFIGDSFETSVPWDKTVLLCI 288 (500)
Q Consensus 214 l~~eg~~~~v~~~~~~l~~i~~~~~~~~~----~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~ 288 (500)
+.++|+.+.++++.+++.++++..+.... ..++..+.|..|.. .+++++.. + .....|++||+++++++++
T Consensus 236 v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~--~--~~~~~d~~vp~~~l~~~~~ 311 (413)
T TIGR00387 236 VEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS--P--LYLIEDGTVPRSKLPEALR 311 (413)
T ss_pred EEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC--C--CcceeEEecCHHHHHHHHH
Confidence 77888777788888999999988766432 12345567877653 34454432 1 1235799999999999998
Q ss_pred HHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCccc
Q psy4699 289 NVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIR 368 (500)
Q Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~ 368 (500)
.++ ++++++++...+|| |++++ ++|+.+.++.. +.++.+++.++.+++.+.+.++||++|+|||+|..|
T Consensus 312 ~~~----~~~~~~~~~~~~~g----H~g~g--~lh~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r 380 (413)
T TIGR00387 312 GIA----DIARKYDFTIANFG----HAGDG--NLHPTILTDPE-DKGEMERVEEAGGEIFELAIELGGTISGEHGIGVVK 380 (413)
T ss_pred HHH----HHHHHcCCeEEEEE----EecCC--ccccccCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCcHhH
Confidence 654 55677888877777 88664 47877665432 223345677788899999999999999999999999
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCCCcccCCC
Q psy4699 369 SHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401 (500)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk 401 (500)
.+|+.+++++..+++|+++|+.|||++||||||
T Consensus 381 ~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 381 AEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcCcCCCCcC
Confidence 999999999999999999999999999999997
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.7e-38 Score=334.75 Aligned_cols=301 Identities=17% Similarity=0.237 Sum_probs=238.4
Q ss_pred CCCccCccccccCccccccccee-------Ee---cC-----CCCCCCCCCCccccccccCccceeeeeeEEEeeecCcc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---NT-----QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRC 134 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g~-----~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~ 134 (500)
++++|+++++++|+.+.+||.++ || |. ...++++||||.++|+||||||||||++||||.|+|+.
T Consensus 154 ~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~ 233 (499)
T PRK11230 154 CSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPV 233 (499)
T ss_pred ceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcc
Confidence 68999999999999999999987 44 21 12335679999999999999999999999999999999
Q ss_pred eeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcccceeeE
Q psy4699 135 QKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATV 214 (500)
Q Consensus 135 ~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 214 (500)
...+++.|+|++++.++++++...++.|.++|++|+..+....+..+ .+.+.+....+++
T Consensus 234 ~~~~~~~f~~~~~a~~~~~~~~~~~~~p~~~el~d~~~~~~~~~~~~--------------------~~~p~~~~~~ll~ 293 (499)
T PRK11230 234 ARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDNLSIRAAEDFIH--------------------AGYPVDAEAILLC 293 (499)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeeCHHHHHHHHHhcC--------------------CCCCCCcceEEEE
Confidence 99999999999999999999999999999999999998865332100 0122122234667
Q ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCC----ccchhhhhhhhh-hHHHHhhhhccccccccceeeeeeccchHHHHHH
Q psy4699 215 LFEGDPEDVKNNEDKIYSIAKRYGGIPAG----ESNGRRGYMLTY-IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCIN 289 (500)
Q Consensus 215 ~~eg~~~~v~~~~~~l~~i~~~~~~~~~~----~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~ 289 (500)
.++|+.+.+..+.+++.++++++++.... .++..+.|..|+ ..+.++... +.. ...|++||+++++++++.
T Consensus 294 e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~--~~~--~~~dv~vP~~~l~~~~~~ 369 (499)
T PRK11230 294 ELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRIS--PDY--YCMDGTIPRRELPGVLEG 369 (499)
T ss_pred EecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhhC--CCe--eEEeecCChHHHHHHHHH
Confidence 77887777888889999999988764321 233446787764 344554432 222 246999999999999986
Q ss_pred HHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCcccc
Q psy4699 290 VKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRS 369 (500)
Q Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~ 369 (500)
++ ++++++++.+.+++ |+++++ +|+.+.++.. ++++..+++++.+++.+.+.++||++|+|||+|+.|.
T Consensus 370 ~~----~~~~~~~~~~~~~g----H~GdGn--~H~~i~~~~~-~~~~~~~~~~~~~~l~~~~~~~GG~is~EHGiG~~k~ 438 (499)
T PRK11230 370 IA----RLSQQYGLRVANVF----HAGDGN--MHPLILFDAN-EPGELERAEALGGKILELCVEVGGSITGEHGVGREKI 438 (499)
T ss_pred HH----HHHHHcCCeEEEEE----EeCCCc--ceeeecCCCC-CHHHHHHHHHHHHHHHHHHHHcCCeEeeeccCchhhH
Confidence 54 56788999888877 888864 6776555432 2223456778888999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHhcCCCCcccCCCcccC
Q psy4699 370 HWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMD 405 (500)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~ 405 (500)
+|+..+++++.+++|+++|+.|||++||||||+++.
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~~ 474 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIPT 474 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeCC
Confidence 999999999999999999999999999999999863
No 5
>KOG1232|consensus
Probab=100.00 E-value=1.1e-33 Score=271.37 Aligned_cols=297 Identities=19% Similarity=0.238 Sum_probs=214.7
Q ss_pred CCCCCCccCccccccCccccccccee-------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeee
Q psy4699 67 AGDIPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP 130 (500)
Q Consensus 67 ~~e~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p 130 (500)
..++.+||+++|+++|.+-+|||+++ +| ....+|+++|||++||||||||||||||++++-+.|
T Consensus 185 KgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~ 264 (511)
T KOG1232|consen 185 KGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP 264 (511)
T ss_pred cccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecC
Confidence 34689999999999999999999998 44 346789999999999999999999999999999999
Q ss_pred cCcceeEEEEEcCCHHHHHHHHHHHHHcC--CCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcc
Q psy4699 131 QPRCQKFGSILFPNFEAGVKCLREIAKKR--CQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDE 208 (500)
Q Consensus 131 ~P~~~~~~~~~f~~~~~a~~~~~~l~~~~--~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (500)
+|....++++..+|++++.+++.. +++. -..+++|+||+..+.++.+.-.. ...+...
T Consensus 265 kpksvn~af~gi~sf~~v~k~fv~-Aks~L~EILSafElmD~~s~~~~~~~l~~-------------------l~~pl~~ 324 (511)
T KOG1232|consen 265 KPKSVNVAFIGIESFDDVQKVFVE-AKSNLTEILSAFELMDNASMELVLEYLKD-------------------LHFPLED 324 (511)
T ss_pred CCcceeEEEEccccHHHHHHHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHhcc-------------------CCCCccC
Confidence 999999999999999998888765 3333 36699999999999876432100 0111111
Q ss_pred cceeeEEEe--cC-HHHHHHHHHHH-HHHHHHcCCCC-----CCccchhhhhhhhhhHHH-Hhhhhccccccccceeeee
Q psy4699 209 MCAATVLFE--GD-PEDVKNNEDKI-YSIAKRYGGIP-----AGESNGRRGYMLTYIIAY-IRDFACDYYFIGDSFETSV 278 (500)
Q Consensus 209 ~~~~~l~~e--g~-~~~v~~~~~~l-~~i~~~~~~~~-----~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~d~~v 278 (500)
..-.++.+| |+ ++.-++.+.++ .+.+++ +-+. -+..+....|.+|...|. +...+ + ....|+++
T Consensus 325 ~~pFyiLiETsGSn~dhD~eKl~afl~d~lek-~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g---~--vyKyDvSL 398 (511)
T KOG1232|consen 325 EHPFYILIETSGSNKDHDEEKLTAFLEDCLEK-GLISDGVLAQDEAEAQKLWKIRESIPEALQKAG---G--VYKYDVSL 398 (511)
T ss_pred CCceEEEEEecCCCccccHHHHHHHHHHhhhh-cccccceecCCHHHHHHHHHHHhccHHHHHhcC---C--EEEeeccc
Confidence 112344444 54 33334444443 333332 2222 123455577877764443 22222 1 23569999
Q ss_pred eccchHHHHHHHHHHHHHHHHhcCCc--eeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCC
Q psy4699 279 PWDKTVLLCINVKKRLTQECTALSIK--FFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGG 356 (500)
Q Consensus 279 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 356 (500)
|...+.+++..+++++.+ .++- ..-|| |.+|++ +|..+.... ...+...-+..-++|.+.+++|
T Consensus 399 pL~d~Y~lvn~~~eRl~~----~~l~~d~~gyG----HlGDgN--lHLNia~~e----fn~~iek~lePfvYE~vs~~~G 464 (511)
T KOG1232|consen 399 PLEDLYNLVNVMKERLGE----AALVGDIVGYG----HLGDGN--LHLNIAVRE----FNKEIEKLLEPFVYEWVSKHKG 464 (511)
T ss_pred cHHHHHHHHHHHHHhhhh----hhhhhcccccc----cccCCc--eeEeeeHHH----HhHHHHHhhhhHHHHHHHhcCC
Confidence 999999999887766654 2221 23344 998864 788766531 1222334456678999999999
Q ss_pred ceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcc
Q psy4699 357 SLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEE 403 (500)
Q Consensus 357 ~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~ 403 (500)
+||+|||+|..|.+|+-...+++.+.+|+.+|..|||+|||||+|.+
T Consensus 465 SISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 465 SISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred ceeccccccccccCccccCCCHHHHHHHHHHHhhcCCcccCCccccC
Confidence 99999999999999999999999999999999999999999999864
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.95 E-value=7.1e-27 Score=247.15 Aligned_cols=301 Identities=17% Similarity=0.196 Sum_probs=211.5
Q ss_pred CCCCccCccccccCccccccccee-------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecC
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P 132 (500)
.+++||+++++++|+.+.+||.++ +| +++..|+++||||.++|+||||||||||++||||.|.|
T Consensus 128 ~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~ 207 (459)
T COG0277 128 TATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLP 207 (459)
T ss_pred cceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCC
Confidence 488999999999999999999987 33 56677899999999999999999999999999999999
Q ss_pred cceeEEEEEcCCHHHHHHHHHHHH----HcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcc
Q psy4699 133 RCQKFGSILFPNFEAGVKCLREIA----KKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDE 208 (500)
Q Consensus 133 ~~~~~~~~~f~~~~~a~~~~~~l~----~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (500)
+...+.++.|++.+.+........ ..+..+.++|++|.. +......... ...+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~-------------------~~~~~~~ 267 (459)
T COG0277 208 ETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAALEFMDRP-IKAAEAYLGG-------------------GALPLEA 267 (459)
T ss_pred chheEEEEeCCCHHHHHHHHHHHHHhhhhcCCCceeeeecchh-HHHHHHhccc-------------------cCCCCCC
Confidence 999999999999999876444332 234678999999997 2211100000 0011111
Q ss_pred cceeeEEEecCH-HHHHHHHHHHHHHHHHcC-CCC--C--CccchhhhhhhhhhHH-HHhhhhccccccccceeeeeecc
Q psy4699 209 MCAATVLFEGDP-EDVKNNEDKIYSIAKRYG-GIP--A--GESNGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWD 281 (500)
Q Consensus 209 ~~~~~l~~eg~~-~~v~~~~~~l~~i~~~~~-~~~--~--~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~d~~vp~~ 281 (500)
...+.+.++|.. ..+......+.+++...+ ... . ......+.|..|.... ...... +. ....|+++|.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~--~~~~d~~vp~~ 343 (459)
T COG0277 268 PARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARLWLARKGALAAAGALG--PG--VIQEDVVVPLE 343 (459)
T ss_pred ceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHHHHHHHHHHHhhC--CC--ccccceeeeHH
Confidence 012344556654 556777777777776666 111 1 1122334555444222 222211 11 34569999999
Q ss_pred chHHHHHHHHHHHHHHHHhcC--CceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCcee
Q psy4699 282 KTVLLCINVKKRLTQECTALS--IKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLS 359 (500)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s 359 (500)
.+++++..+.. ...+++ +.+..++ |.++++ +|..+..+..+..+.......+.+.+.+.+.++||+++
T Consensus 344 ~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gG~~~ 413 (459)
T COG0277 344 ALPEFLREILA----LLDKAGLALRVALFG----HAGDGN--LHLNILYDVGDEAEELARAEALNEAIEALAVELGGSIS 413 (459)
T ss_pred HHHHHHHHHHH----HHHhcCCCceeeeec----ccCCCc--ceeeeccCCCccHHHHHHHHHHHHHHHHHHHHhCCeeE
Confidence 99999986654 445555 5555555 776643 67665543221122233456677778888999999999
Q ss_pred eeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCccc
Q psy4699 360 HHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEM 404 (500)
Q Consensus 360 ~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~ 404 (500)
++||+|..+.+|+..+.+ +.++.|+++|+.|||+++||||++++
T Consensus 414 ~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~~ 457 (459)
T COG0277 414 GEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLFR 457 (459)
T ss_pred EecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccCC
Confidence 999999999999888877 78999999999999999999999874
No 7
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.95 E-value=2.2e-28 Score=236.87 Aligned_cols=241 Identities=25% Similarity=0.384 Sum_probs=181.1
Q ss_pred cCcceeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcccc
Q psy4699 131 QPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMC 210 (500)
Q Consensus 131 ~P~~~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (500)
+|+.+.++++.|+|+++|.++++++.++++.|+++|++|+..++.+....+. ..+.+..+
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~g~~p~a~el~d~~~~~~~~~~~~~--------------------~~~~~~~~ 60 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQSGIIPSAIELLDSAALKLALEHWGE--------------------PLPPEGGA 60 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHHCSSCCECCCCHHHHHHHHHHSEEE--------------------TSSTTTSE
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHcCCCceEEeeeCHHHHHHHHhhcCC--------------------CccCCccc
Confidence 5899999999999999999999999888999999999999999876543210 11222234
Q ss_pred eeeEEEecCH-HHHHHHHH-HHHHHHHHcCCCCC----CccchhhhhhhhhhHH-HHhhhhccccccccceeeeeeccch
Q psy4699 211 AATVLFEGDP-EDVKNNED-KIYSIAKRYGGIPA----GESNGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWDKT 283 (500)
Q Consensus 211 ~~~l~~eg~~-~~v~~~~~-~l~~i~~~~~~~~~----~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~d~~vp~~~~ 283 (500)
.+++.++|+. +.++.+.+ .+.++++..++... ..++..+.|+.|.... +++......+....+.|++||++++
T Consensus 61 ~llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l 140 (248)
T PF02913_consen 61 VLLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRL 140 (248)
T ss_dssp EEEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHH
T ss_pred EEEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhh
Confidence 5677788875 45677777 78888887766541 1233457788766443 2333333444556788999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeecc
Q psy4699 284 VLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHG 363 (500)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg 363 (500)
+++++.+ +++++++++...+|| |+++++ +|+.+.++.. .+.+.+.++++.+.+.+.+.++||++|++||
T Consensus 141 ~~~~~~~----~~~~~~~~~~~~~~g----H~~~g~--~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG 209 (248)
T PF02913_consen 141 PEFLREI----RALLREYGLEVCHFG----HAGDGN--LHLYILFDPR-DPEEPERAEALWDELYELVLELGGSISAEHG 209 (248)
T ss_dssp HHHHHHH----HHHHHHCTEEEEEEE----EEEECE--EEEEEEEETT-SHHHHHHHHHHHHHHHHHHHHTT-BBSSSSG
T ss_pred hhHHHhh----hhhhhhccccccceE----EccCCe--EEEEeecccc-hHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999865 556677886666666 999875 6777666533 2344567788888999999999999999999
Q ss_pred CCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCc
Q psy4699 364 VGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKE 402 (500)
Q Consensus 364 ~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~ 402 (500)
+|..|.+|+.+++++..+++|+++|+.|||+|||||||+
T Consensus 210 ~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 210 IGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp GGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG-
T ss_pred hhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCCC
Confidence 999999999999999999999999999999999999985
No 8
>KOG1231|consensus
Probab=99.88 E-value=1.2e-23 Score=207.44 Aligned_cols=305 Identities=14% Similarity=0.099 Sum_probs=196.5
Q ss_pred CCCccCccccccCccccccccee-------Ee-c-C---CCCCCCCCCCccccccccCccceeeeeeEEEeeecC---cc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME-N-T---QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP---RC 134 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV-g-~---~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P---~~ 134 (500)
.++||..++.++|-..+|||+.. || | + ++.+ -.|++|..+|+||||||||||+|+++|.|+| +.
T Consensus 166 ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~-r~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe 244 (505)
T KOG1231|consen 166 LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSK-RANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQE 244 (505)
T ss_pred eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEeccc-ccCceeeeeeeccCcceeeEEEEEEEeccCCccchH
Confidence 68999999999999999999987 55 2 1 2233 3899999999999999999999999999999 66
Q ss_pred eeEEEE-EcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcC-CCCccccee
Q psy4699 135 QKFGSI-LFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILG-FRDDEMCAA 212 (500)
Q Consensus 135 ~~~~~~-~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 212 (500)
+...++ .|+..+.++.+.+....++.+.+.+++.|...+..+....- ..|+.++.. ++..+...+
T Consensus 245 ~lis~~~~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~-------------~~yclev~ky~d~~e~pti 311 (505)
T KOG1231|consen 245 RLISVCGSFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHS-------------TNYCLEVAKYYDLTEAPTL 311 (505)
T ss_pred HhhhhhcCCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCC-------------eeeeeehhhccCcccCchH
Confidence 666666 79999999999988778899999999999998876543210 001111111 222222122
Q ss_pred eEEEec-CHHHHHHHHHHHHHHHHHcCCCC-----CCccchhhhhhhhhhHHHHhhhhcccc-----ccccceeeeeecc
Q psy4699 213 TVLFEG-DPEDVKNNEDKIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYY-----FIGDSFETSVPWD 281 (500)
Q Consensus 213 ~l~~eg-~~~~v~~~~~~l~~i~~~~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~~~~-----~~~~~~d~~vp~~ 281 (500)
...+.| +++....+-..+...++-+.... .........|..++. |+ .+..+++ .-..+.|+++|.+
T Consensus 312 ~~e~~~l~~~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphp--Wl-nL~vpks~i~~fa~gv~~dIl~~~s 388 (505)
T KOG1231|consen 312 FQEIGGLSEKLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHP--WL-NLAVPKSRISDFARGVFTDILVPNS 388 (505)
T ss_pred HHHHhccchhhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCc--hh-eeecccccchhhhhhhccceeeccC
Confidence 222333 12111212222223332221111 011223356776664 11 1112222 1123568999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeee
Q psy4699 282 KTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHH 361 (500)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~ 361 (500)
+.+.++-...+.+ +.+...-.+.+ |+.++ +.|....+... ..++.+.++++.+.+.+.+.+. |....+
T Consensus 389 ~g~~liyptnk~~----kw~~~~sav~p----h~~e~--vFy~v~~l~s~-~~~~~e~~~~~n~riv~fc~~a-g~~~ke 456 (505)
T KOG1231|consen 389 SGPVLIYPTNKDL----KWSNRLSAVTP----HAGEG--VFYLVILLRSS-GKEEHEELEQLNDRIVKFCLAA-GTCTKE 456 (505)
T ss_pred CCceEEeccccCc----chhhhhccccc----cCCCc--eEEEEEEecCC-CchhHHHHHHHHHHHHHHHHHc-CcChhh
Confidence 9988875443221 11122222333 66553 35655444321 1334455666677777777777 899999
Q ss_pred ccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCccc
Q psy4699 362 HGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEM 404 (500)
Q Consensus 362 hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~ 404 (500)
|+++..+++++.+++|+...+.|+ +|.++||+.|||||+.+.
T Consensus 457 yl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~Il~PGq~If 498 (505)
T KOG1231|consen 457 YLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKRILNPGQRIF 498 (505)
T ss_pred hcCCcccHHHHHHHhChhHHHHHH-HHhhcCHHHhcCCccccc
Confidence 999999999999999988888888 999999999999999863
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.87 E-value=3.1e-21 Score=193.82 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=164.5
Q ss_pred CCCCccCccccccCccccccccee-------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecC
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P 132 (500)
.++++|.++++.+|..+.+||.++ +| |+++.||++||||.++|+||+|||||||++|||+.|+|
T Consensus 91 ~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVitevtlkl~P~p 170 (352)
T PRK11282 91 GATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLLEVSLKVLPRP 170 (352)
T ss_pred CcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhheEEEEEEEecC
Confidence 379999999999999999999987 44 56778999999999999999999999999999999999
Q ss_pred cceeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCccccee
Q psy4699 133 RCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAA 212 (500)
Q Consensus 133 ~~~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (500)
+...++.+.++ ..++++++.++..+++.|++.+..+ . .+
T Consensus 171 ~~~~t~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------------------~---~l 209 (352)
T PRK11282 171 RAELTLRLEMD-AAEALRKLNEWGGQPLPISASCWDG-------------------------------------G---TL 209 (352)
T ss_pred ceEEEEEEecC-HHHHHHHHHHHhcCCCCCchhhhcC-------------------------------------C---ee
Confidence 98888777765 5778888888766555554443210 0 25
Q ss_pred eEEEecCHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhhhhhHHHHhhhh-ccccccccceeeeeeccchHHHHHHHH
Q psy4699 213 TVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFA-CDYYFIGDSFETSVPWDKTVLLCINVK 291 (500)
Q Consensus 213 ~l~~eg~~~~v~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~d~~vp~~~~~~~~~~~~ 291 (500)
++.++|.++.|+.+.+++. +.....++. ..|.. +|+.. +....-.....+++||+..+.++..
T Consensus 210 ~~rl~g~~~~v~~~~~~~~-------~~~~~~~~~-~~W~~------~r~~~~~~~~~~~~~~ri~~~p~~~~~~~~~-- 273 (352)
T PRK11282 210 YLRLSGAEGAVKAARERLG-------GEELDDAEA-AFWQQ------LREQTLPFFDDGRPLWRLSLPSTAPPLDLPG-- 273 (352)
T ss_pred EEEEeCcHHHHHHHHHHhc-------ccccCchhh-hHHHH------HHhcccCcCCCCCeEEEEEcCCCCccccccc--
Confidence 6778998878887666652 122222223 46642 23321 0000002256899999998877430
Q ss_pred HHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCcccccc
Q psy4699 292 KRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHW 371 (500)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~ 371 (500)
+.. + + ..+| + .+... ++ ...++++.+.+.||..+--++.......|
T Consensus 274 ------------~~~-~-----~-~~gg--~----~w~~~---~~------~~~~~r~~~~~~gG~~tl~~a~~~~~~~~ 319 (352)
T PRK11282 274 ------------EQL-I-----D-WGGA--Q----RWLKS---DA------DAAAIRAAAAAAGGHATLFRAGDRAGPVF 319 (352)
T ss_pred ------------ceE-E-----E-cccc--e----EEecC---cc------cHHHHHHHHHhcCCEEEEEECCcccccCC
Confidence 000 0 1 1122 1 11101 11 11357777889999999888766432223
Q ss_pred cccccCHHHHHHHHHHHHhcCCCCcccCCCcc
Q psy4699 372 YPEHVSQVGLELYRSTKQALDPNNMFADGKEE 403 (500)
Q Consensus 372 ~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~ 403 (500)
-+ +++....+++++|+.|||++|||||++.
T Consensus 320 ~~--~~~~~~~l~~~lK~~fDP~~ilnpgr~~ 349 (352)
T PRK11282 320 HP--LPAPLLRIHRRLKQAFDPAGIFNPGRLY 349 (352)
T ss_pred CC--CCHHHHHHHHHHHHhcCcccCCCCCcCC
Confidence 22 3455689999999999999999999986
No 10
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.69 E-value=4.8e-17 Score=173.13 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHHHHcCCc---eeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccCCCcCccc
Q psy4699 336 PDQTLTYLQHCARDEIIACGGS---LSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMDQKQFSDL 412 (500)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gG~---~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l 412 (500)
+.+.+|.+++.+.......+.. ++.+..++. ...-+.++.+++.++..++.. .+-.|.+++|+
T Consensus 404 e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~-----------s~L~e~i~~~~~~~~~~~~~~---~~~gHaGdGnl 469 (555)
T PLN02805 404 AKKELWKIRKEALWACFAMEPKYEAMITDVCVPL-----------SHLAELISRSKKELDASPLVC---TVIAHAGDGNF 469 (555)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEH-----------HHHHHHHHHHHHHHHHcCCeE---EEEEEcCCCcE
Confidence 3455677766554444333321 233333332 234566777777777666432 11133478999
Q ss_pred eeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCC
Q psy4699 413 LYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASG 492 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpg 492 (500)
|.+++ + ....+++.++++++.+++++.+. ++||++|+|||+|..|++|+..++++..+++|++||++|||+||||||
T Consensus 470 H~~i~-~-~~~~~~~~~~~~~~~~~i~~~~~-~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPG 546 (555)
T PLN02805 470 HTIIL-F-DPSQEDQRREAERLNHFMVHTAL-SMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPG 546 (555)
T ss_pred EEEec-c-CCCCHHHHHHHHHHHHHHHHHHH-HcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCC
Confidence 97642 1 11123334566778888888886 899999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q psy4699 493 NLLLP 497 (500)
Q Consensus 493 k~~~~ 497 (500)
|+|+|
T Consensus 547 Ki~~~ 551 (555)
T PLN02805 547 KLIPP 551 (555)
T ss_pred ceeCc
Confidence 99975
No 11
>KOG1232|consensus
Probab=99.66 E-value=3.4e-16 Score=151.45 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=115.7
Q ss_pred CchHHHHHHHHHHHHHHHHcCCceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccCC-CcCccce
Q psy4699 335 NPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMDQ-KQFSDLL 413 (500)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~~-~~~~~l~ 413 (500)
.+...+|.+++.+.+...+.||....+.+.+. ++.+++....|.++-+.+++.. +++.+ -+|+|+|
T Consensus 369 ~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL-----------~d~Y~lvn~~~eRl~~~~l~~d--~~gyGHlGDgNlH 435 (511)
T KOG1232|consen 369 AEAQKLWKIRESIPEALQKAGGVYKYDVSLPL-----------EDLYNLVNVMKERLGEAALVGD--IVGYGHLGDGNLH 435 (511)
T ss_pred HHHHHHHHHHhccHHHHHhcCCEEEeeccccH-----------HHHHHHHHHHHHhhhhhhhhhc--ccccccccCCcee
Confidence 34567899999999999999988777766542 3578999999999999887764 45544 3799999
Q ss_pred eeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCC
Q psy4699 414 YSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGN 493 (500)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk 493 (500)
.++--- .-+.+-...+...+|||+. ..+||||+|||+|..|++|+....+|+.+.+|+.+|+.|||+|||||.|
T Consensus 436 LNia~~-----efn~~iek~lePfvYE~vs-~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILnPYK 509 (511)
T KOG1232|consen 436 LNIAVR-----EFNKEIEKLLEPFVYEWVS-KHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILNPYK 509 (511)
T ss_pred EeeeHH-----HHhHHHHHhhhhHHHHHHH-hcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcCCcccCCccc
Confidence 875211 1123334567788999996 8999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy4699 494 LL 495 (500)
Q Consensus 494 ~~ 495 (500)
.+
T Consensus 510 ~i 511 (511)
T KOG1232|consen 510 YI 511 (511)
T ss_pred cC
Confidence 75
No 12
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.64 E-value=4.1e-15 Score=153.73 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=95.7
Q ss_pred CCCccCccccccCccccccccee------Ee---c------------CCCC---C---CCCCC-----------------
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE------ME---N------------TQHP---N---EDQAF----------------- 105 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~------vV---g------------~~~~---k---~~~G~----------------- 105 (500)
++++|++++|++|+...+||.++ +| | +..+ + .+.||
T Consensus 142 asIGGnIAtNAGG~~vlRgga~te~vL~~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y 221 (564)
T PRK11183 142 ASVIGGICNNSGGALVQRGPAYTEMALYAQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEY 221 (564)
T ss_pred CCCccceEECCcchhheEcchhhhhhhhhEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhH
Confidence 46679999999999999999987 44 1 1222 2 57899
Q ss_pred -----------------Cccccc--cccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHHc-CCCccEE
Q psy4699 106 -----------------SEHAQS--TVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKK-RCQPSSI 165 (500)
Q Consensus 106 -----------------dl~~Lf--iGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~~-~~~p~a~ 165 (500)
|+.+|| +||||||||| +++|++.|+|+..+++++.|+|.+++.++.+.+... +..|.++
T Consensus 222 ~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~ 300 (564)
T PRK11183 222 AERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAG 300 (564)
T ss_pred HHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeE
Confidence 999999 9999999999 999999999999999999999999999999999877 9999999
Q ss_pred EeechHhHhhccc
Q psy4699 166 RLVDNVQLKAGQF 178 (500)
Q Consensus 166 el~d~~~~~~~~~ 178 (500)
|+||+..++++..
T Consensus 301 Eym~r~~~d~~~~ 313 (564)
T PRK11183 301 EYMHRDAFDIAEK 313 (564)
T ss_pred eecCHHHHHHHHH
Confidence 9999999987654
No 13
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.57 E-value=5.4e-16 Score=149.96 Aligned_cols=110 Identities=25% Similarity=0.404 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCcccCCCcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCC
Q psy4699 379 VGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGK 458 (500)
Q Consensus 379 ~~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~ 458 (500)
...+.++.+++.++..++.. .++ .+..++|+|..+. + ...++++.+.++++.+.+++.+. ++||++|+|||+|.
T Consensus 139 ~l~~~~~~~~~~~~~~~~~~--~~~-gH~~~g~~h~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~gG~is~eHG~G~ 212 (248)
T PF02913_consen 139 RLPEFLREIRALLREYGLEV--CHF-GHAGDGNLHLYIL-F-DPRDPEEPERAEALWDELYELVL-ELGGSISAEHGIGK 212 (248)
T ss_dssp HHHHHHHHHHHHHHHCTEEE--EEE-EEEEECEEEEEEE-E-ETTSHHHHHHHHHHHHHHHHHHH-HTT-BBSSSSGGGH
T ss_pred hhhhHHHhhhhhhhhccccc--cce-EEccCCeEEEEee-c-ccchHHHHHHHHHHHHHHHHHHH-hcccccccccchhh
Confidence 35577777777777766222 111 1235888885432 1 11234455666777777777775 89999999999999
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCCCCCCCc
Q psy4699 459 IRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNL 494 (500)
Q Consensus 459 ~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~ 494 (500)
.|++|+.+++++..+++|++||++|||+|||||||+
T Consensus 213 ~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 213 LKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp HHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG-
T ss_pred hhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCCC
Confidence 999999999999999999999999999999999996
No 14
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.55 E-value=1.1e-14 Score=154.10 Aligned_cols=111 Identities=13% Similarity=0.171 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCCCcccCCCcccCCCcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCc
Q psy4699 380 GLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKI 459 (500)
Q Consensus 380 ~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~ 459 (500)
..+.++.+++.++-.++... +-.+.+++|+|++++.. ...+++.++++.+.+.+++.+. .+||++|+|||+|+.
T Consensus 363 l~~~~~~~~~~~~~~~~~~~---~~gH~GdGn~H~~i~~~--~~~~~~~~~~~~~~~~l~~~~~-~~GG~is~EHGiG~~ 436 (499)
T PRK11230 363 LPGVLEGIARLSQQYGLRVA---NVFHAGDGNMHPLILFD--ANEPGELERAEALGGKILELCV-EVGGSITGEHGVGRE 436 (499)
T ss_pred HHHHHHHHHHHHHHcCCeEE---EEEEeCCCcceeeecCC--CCCHHHHHHHHHHHHHHHHHHH-HcCCeEeeeccCchh
Confidence 44556666666655443211 11245799999875311 1112223456777778888875 899999999999999
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCCCCCCCccC
Q psy4699 460 RSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLLL 496 (500)
Q Consensus 460 k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~ 496 (500)
|++|+..++++..+++|++||++|||+|||||||+|+
T Consensus 437 k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 437 KINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 9999999999999999999999999999999999996
No 15
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.52 E-value=8e-14 Score=145.11 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHHHHcCCc-eeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccCCCcCcccee
Q psy4699 336 PDQTLTYLQHCARDEIIACGGS-LSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLY 414 (500)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gG~-~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~ 414 (500)
+...+|..++.....+.+.+.. ++.+.+++. ....+.++.+++.+...+.- . .+..+.+++|+|.
T Consensus 272 ~~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~-----------~~l~~~~~~~~~~~~~~~~~--~-~~~gH~g~g~lh~ 337 (413)
T TIGR00387 272 ERALLWAGRRNAFKAASKLSPLYLIEDGTVPR-----------SKLPEALRGIADIARKYDFT--I-ANFGHAGDGNLHP 337 (413)
T ss_pred HHHHHHHHHHHhHHHHHhhCCCcceeEEecCH-----------HHHHHHHHHHHHHHHHcCCe--E-EEEEEecCCcccc
Confidence 3455676666555544443321 223333322 12344444555544333311 1 1122347888886
Q ss_pred eeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCC
Q psy4699 415 SVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGN 493 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk 493 (500)
+++ + ....+++.+++.++.+.+++.+. ++||++|+|||+|..|++|+.+++++..+++|++||++|||+|||||||
T Consensus 338 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~gG~is~eHG~G~~r~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 338 TIL-T-DPEDKGEMERVEEAGGEIFELAI-ELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred ccC-C-CCCCHHHHHHHHHHHHHHHHHHH-HcCCEEEEeccCcHhHHHHHHHhcCHHHHHHHHHHHHHcCcCcCCCCcC
Confidence 532 1 11112223455667777777775 8999999999999999999999999999999999999999999999997
No 16
>PLN02441 cytokinin dehydrogenase
Probab=99.48 E-value=1.4e-12 Score=137.30 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=174.8
Q ss_pred CCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
.++||.+++++.|..+.+||.+. || .+.+.. ...++||-..+.||+|+|||||++||||.|.|+....+
T Consensus 169 ~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~ 248 (525)
T PLN02441 169 LTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWI 248 (525)
T ss_pred eEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEE
Confidence 58899999888899999999986 55 222221 24568999999999999999999999999999988898
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhh----ccc-----cCCCCcchhhhhhhhhhhhhhhhcCCCC-cc
Q psy4699 139 SILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKA----GQF-----FRPDPGYLELLTDGLKKLYVTKILGFRD-DE 208 (500)
Q Consensus 139 ~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~----~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (500)
.+.|++++++.+.+.+++. +..+..+++++...+-- +.. ..|.+.. +...... +.
T Consensus 249 ~~~y~~~~~~~~d~~~li~-~~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 313 (525)
T PLN02441 249 RVLYSDFSTFTRDQERLIS-RPPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPV--------------RASSLPSDGG 313 (525)
T ss_pred EEEcCCHHHHHHHHHHHHh-cCCCCCcceEeEEEEeCCCCceeeeecccCCccccc--------------hhhccccCCc
Confidence 9999999999999999875 45556677777654421 000 0011000 0000101 11
Q ss_pred c-ceeeEEEecC---HHHHHHHHHHHHHHHHHcC---CCCC--CccchhhhhhhhhhHHHHhhhhccccccccceeeeee
Q psy4699 209 M-CAATVLFEGD---PEDVKNNEDKIYSIAKRYG---GIPA--GESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVP 279 (500)
Q Consensus 209 ~-~~~~l~~eg~---~~~v~~~~~~l~~i~~~~~---~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~vp 279 (500)
+ +.+.+..+-+ ...++...++ +++... +... +...-+..-+.......+|..+.+ ..+..+.++-||
T Consensus 314 ~~y~le~~~~~~~~~~~~~~~~~~~---ll~~L~~~~~~~~~~d~~y~~fl~rv~~~e~~lr~~G~W-~~phPWlnlfvp 389 (525)
T PLN02441 314 VLYCLEVAKYYDEDTSDTVDQEVES---LLKRLSFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLW-EVPHPWLNLFVP 389 (525)
T ss_pred eEEEEEEEEeeCCCCccchhhHHHH---HHhhcCCCCCCceecccCHHHHHHhhhhHHHHHhhcCCc-CCCCchhheeCc
Confidence 1 0111112212 2234444444 333332 2111 111111111111222345554432 233446789999
Q ss_pred ccchHHHHHHHHHHHHHHHHh-cCCceeeee-------eeeeeeecCCccEEEEEeccCCCC--CCchHHHHHHHHHHHH
Q psy4699 280 WDKTVLLCINVKKRLTQECTA-LSIKFFETS-------CRVTQTYDAGSCIYFYFGFNARDF--ENPDQTLTYLQHCARD 349 (500)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~-------~~~~h~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 349 (500)
.+++.++.+.+-+.+ ... .+-++.+|= .+.+-....+. +...+++..... .++.+.+.+-.+++.+
T Consensus 390 ~s~i~~f~~~v~~~i---~~~~~~G~~liyP~~~~~~~~~~s~~~P~~~-~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~ 465 (525)
T PLN02441 390 KSRIADFDDGVFKGI---LLDGTNGPILVYPLNRSKWDNRTSAVIPDED-IFYLVALLRSALPSGDDLEHLLAQNKEILR 465 (525)
T ss_pred HHHHHHHHHHHHhhc---ccccCCCeEEEEecccccCCCCCccccCCCC-eEEEEEEcCCCCCCcccHHHHHHHHHHHHH
Confidence 999999988754433 222 333334441 11211112222 333233322211 1244445455566777
Q ss_pred HHHHcCC--ceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCC
Q psy4699 350 EIIACGG--SLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401 (500)
Q Consensus 350 ~~~~~gG--~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk 401 (500)
.+.+.|+ .-+-.|- ..+.+| ..++| ..|+.+.+.|+.+||.+||+||.
T Consensus 466 ~~~~~g~~~k~Yl~~~--~~~~~W-~~HfG-~~w~~f~~~K~~yDP~~iL~pgq 515 (525)
T PLN02441 466 FCEKAGIGVKQYLPHY--TTQEEW-KRHFG-PKWETFVRRKAKFDPLAILSPGQ 515 (525)
T ss_pred HHHHcCCceEEcCCCC--CCHHHH-HHHhc-chHHHHHHHHhhCCchhhcCCCC
Confidence 7777787 4444444 233444 45667 46999999999999999999994
No 17
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.03 E-value=8.1e-10 Score=117.02 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCc-eeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccCCCcCccceee
Q psy4699 337 DQTLTYLQHCARDEIIACGGS-LSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYS 415 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~gG~-~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~~ 415 (500)
...+|..++.+.......+.. +..+..++. ....+.++.++...+..+...+ .....+..++|+|+.
T Consensus 312 ~~~~~~~r~~~~~~~~~~~~~~~~~d~~vp~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~ 379 (459)
T COG0277 312 AARLWLARKGALAAAGALGPGVIQEDVVVPL-----------EALPEFLREILALLDKAGLALR-VALFGHAGDGNLHLN 379 (459)
T ss_pred HHHHHHHHHHHHHHHHhhCCCccccceeeeH-----------HHHHHHHHHHHHHHHhcCCCce-eeeecccCCCcceee
Confidence 445666666666665555532 111111111 1234555666666655443111 112234578898865
Q ss_pred eecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCCcc
Q psy4699 416 VYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLL 495 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~ 495 (500)
+... .....+..+...++.+.+.+.+. ++||++++|||+|..|.+|+....+ +.+++|+++|+.|||+|||||||++
T Consensus 380 ~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~ 456 (459)
T COG0277 380 ILYD-VGDEAEELARAEALNEAIEALAV-ELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLF 456 (459)
T ss_pred eccC-CCccHHHHHHHHHHHHHHHHHHH-HhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccC
Confidence 4211 11112223445666777777775 8999999999999999999999888 7899999999999999999999998
Q ss_pred CC
Q psy4699 496 LP 497 (500)
Q Consensus 496 ~~ 497 (500)
++
T Consensus 457 ~~ 458 (459)
T COG0277 457 RL 458 (459)
T ss_pred CC
Confidence 64
No 18
>KOG0020|consensus
Probab=99.02 E-value=3.7e-10 Score=113.06 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=59.0
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCcccccCCCCCCCCCCCCccCc
Q psy4699 5 KFVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 76 (500)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~~~~~~~~~~~~e~~~~g~~ 76 (500)
-|+||++|+.+|++|++++++|.|||+||+| |+.||.||++|++++|+|++++.++++.+++++++..+...
T Consensus 690 lirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~e~ee~E~~~~~ae 769 (785)
T KOG0020|consen 690 LIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEIEEEEDEPETSEAE 769 (785)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCcccccccccccccCCCCccccc
Confidence 4899999999999999999999999999999 99999999999999999999865444433333344444433
No 19
>KOG1233|consensus
Probab=98.90 E-value=7e-09 Score=101.39 Aligned_cols=159 Identities=24% Similarity=0.317 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCceeeec-cCCcccccc--------------c----ccc-cCHHHHHHHHHHHHh----c
Q psy4699 336 PDQTLTYLQHCARDEIIACGGSLSHHH-GVGKIRSHW--------------Y----PEH-VSQVGLELYRSTKQA----L 391 (500)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gG~~s~~h-g~g~~~~~~--------------~----~~~-~~~~~~~~~~~~K~~----~ 391 (500)
+.+...+-.+.+++.+.+++|...+.- |---....| + ... -++....+-+.+|++ .
T Consensus 428 dre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEc 507 (613)
T KOG1233|consen 428 DREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKREC 507 (613)
T ss_pred cHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888765532 211011110 0 000 112334455544443 3
Q ss_pred CCCCcccCCCc---ccCCCcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccC
Q psy4699 392 DPNNMFADGKE---EMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHV 468 (500)
Q Consensus 392 dP~~llnpgk~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~ 468 (500)
-..++--|--. +...+-.|.+.|+.|+|......+..+-.+++..+..+.+. +.||++|++||+|+.|+.||....
T Consensus 508 k~~gv~~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIl-acGGSlSHHHGVGKiRkqW~~~~~ 586 (613)
T KOG1233|consen 508 KAQGVTHPVLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEIL-ACGGSLSHHHGVGKIRKQWMLTTN 586 (613)
T ss_pred HhcCCCcccccceeEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHH-hcCCcccccccchHHHHHHHHhhh
Confidence 44444332211 22234567899999998775555556777788777888775 899999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCCCCCCcc
Q psy4699 469 SQVGLELYRSTKQALDPNNVFASGNLL 495 (500)
Q Consensus 469 ~~~~~~~~~~iK~~~DP~~ilnpgk~~ 495 (500)
+...+.+++++|..+||+||+.-++++
T Consensus 587 ~~vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 587 GAVGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred hhHhHHHHHHHHHhcChhhhccccccC
Confidence 999999999999999999999988764
No 20
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=98.59 E-value=7.4e-07 Score=93.02 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=65.2
Q ss_pred CCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
.+++|.++++..|. ..+||.+. +| .+.+.. ...++||-..++||.|+|||||++||++.|.+......
T Consensus 104 ~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~ 182 (419)
T TIGR01679 104 QSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRD 182 (419)
T ss_pred ceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEE
Confidence 57899998887776 46899976 44 222222 23578999999999999999999999999997655543
Q ss_pred EEEcCCHHHHHHHHHHHHH
Q psy4699 139 SILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 139 ~~~f~~~~~a~~~~~~l~~ 157 (500)
...+++++++.+.++..
T Consensus 183 --~~~~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 183 --WRRPLAQTLERLDEFVD 199 (419)
T ss_pred --EecCHHHHHHHHHHHHh
Confidence 34688888888888764
No 21
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=98.50 E-value=1.3e-05 Score=84.93 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=66.6
Q ss_pred CCCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeE
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKF 137 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~ 137 (500)
..+++|.+++++.|.. .+||.+. +| .+.++. ....+||-..+.||.|+|||||++||+++|.+.-...
T Consensus 156 ~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~ 234 (541)
T TIGR01676 156 EQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEH 234 (541)
T ss_pred CceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEE
Confidence 4689999999988885 5899987 44 122221 2345788899999999999999999999999876554
Q ss_pred EEEEcCCHHHHHHHHHHHHHc
Q psy4699 138 GSILFPNFEAGVKCLREIAKK 158 (500)
Q Consensus 138 ~~~~f~~~~~a~~~~~~l~~~ 158 (500)
... .++++.++-+.++..+
T Consensus 235 ~~~--~~~~e~l~~~~~~~~~ 253 (541)
T TIGR01676 235 TFI--SNMKDIKKNHKKFLAD 253 (541)
T ss_pred EEe--cCHHHHHHHHHHHHhc
Confidence 443 7888888888887644
No 22
>KOG1231|consensus
Probab=98.49 E-value=1.2e-07 Score=95.16 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCCccC
Q psy4699 425 PEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLLL 496 (500)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~ 496 (500)
+++.++.++.-+.+.+++. +. |+..++||+|..|++|....+|+.-.++|+ +|.+|||+.|||||+.|.
T Consensus 430 ~~~~e~~~~~n~riv~fc~-~a-g~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~Il~PGq~If 498 (505)
T KOG1231|consen 430 KEEHEELEQLNDRIVKFCL-AA-GTCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKRILNPGQRIF 498 (505)
T ss_pred chhHHHHHHHHHHHHHHHH-Hc-CcChhhhcCCcccHHHHHHHhChhHHHHHH-HHhhcCHHHhcCCccccc
Confidence 4445566666666777774 45 999999999999999999999999898998 999999999999999884
No 23
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=98.44 E-value=1.3e-05 Score=83.88 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeE
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKF 137 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~ 137 (500)
..+++|.++++..|. +.+||.+. +| .+.+.. ....+|+-+...||+|+|||||++||++.|.+.....
T Consensus 109 ~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~ 187 (438)
T TIGR01678 109 EVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQET 187 (438)
T ss_pred CceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHHHhcCCCceEeeEEEEEEEEeccceEEE
Confidence 368999999998886 68999986 33 222221 2346788889999999999999999999998765554
Q ss_pred EEEEcCCHHHHHHHHHHHHH
Q psy4699 138 GSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 138 ~~~~f~~~~~a~~~~~~l~~ 157 (500)
....++++.++.+.++..
T Consensus 188 --~~~~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 188 --SFVSTLKELLDNWDSHWK 205 (438)
T ss_pred --EecCCHHHHHHHHHHHhh
Confidence 466888988888877654
No 24
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=98.21 E-value=1.3e-06 Score=93.09 Aligned_cols=52 Identities=29% Similarity=0.584 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCcc
Q psy4699 6 FVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDED 57 (500)
Q Consensus 6 ~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~ 57 (500)
|+.|+++++.+++++.++++|++|||+|+| |++|++||++||+.+|+++.++
T Consensus 442 Ik~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~ 501 (531)
T PF00183_consen 442 IKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDA 501 (531)
T ss_dssp HHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STT
T ss_pred HHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCC
Confidence 788899999998899999999999999999 9999999999999999998764
No 25
>KOG0019|consensus
Probab=98.15 E-value=1.9e-06 Score=89.46 Aligned_cols=53 Identities=42% Similarity=0.647 Sum_probs=49.4
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCcc
Q psy4699 4 QKFVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDED 57 (500)
Q Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~ 57 (500)
+-|++|++++++|++| .+++++.+||+|||| |+.|++|||+|+++||++++++
T Consensus 591 pivk~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~ 651 (656)
T KOG0019|consen 591 PLVKTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDE 651 (656)
T ss_pred hHHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCc
Confidence 3589999999999988 999999999999999 9999999999999999998763
No 26
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=97.94 E-value=1.4e-05 Score=80.94 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCCccC
Q psy4699 436 KTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLLL 496 (500)
Q Consensus 436 ~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~ 496 (500)
..+++.+. ..||..+.-++....+..|-+ +++..+.+|++||+.|||++|||||++..
T Consensus 293 ~~~r~~~~-~~gG~~tl~~a~~~~~~~~~~--~~~~~~~l~~~lK~~fDP~~ilnpgr~~~ 350 (352)
T PRK11282 293 AAIRAAAA-AAGGHATLFRAGDRAGPVFHP--LPAPLLRIHRRLKQAFDPAGIFNPGRLYA 350 (352)
T ss_pred HHHHHHHH-hcCCEEEEEECCcccccCCCC--CCHHHHHHHHHHHHhcCcccCCCCCcCCC
Confidence 45777775 899999999998876544433 46677999999999999999999999874
No 27
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=97.68 E-value=5.3e-05 Score=81.37 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=64.8
Q ss_pred CCCCccCccccccCcccc-ccccee-------Ee---cC-----CCC--CCCCCCCccccccccCccceeeeeeEEEeee
Q psy4699 69 DIPVAEGEAEDASRMEEG-LRGHLE-------ME---NT-----QHP--NEDQAFSEHAQSTVEQGTLGVITKVVLKIRP 130 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~-~yG~~~-------vV---g~-----~~~--k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p 130 (500)
..+++|.+++++.|.... +||.+. || |. .++ .....+||-..+.||+|+|||||++|||+.|
T Consensus 131 ~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P 210 (557)
T TIGR01677 131 GLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQP 210 (557)
T ss_pred CeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEc
Confidence 368999999988887764 778765 44 31 222 2335568889999999999999999999999
Q ss_pred cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 131 QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 131 ~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.+. ....+.+...+...+.+.++.
T Consensus 211 ~~~--~~~~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 211 MFK--RSVTYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred ccc--ceEEEEcCCHHHHHHHHHHhh
Confidence 987 333456788888888777765
No 28
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.62 E-value=8.8e-05 Score=81.21 Aligned_cols=54 Identities=57% Similarity=0.806 Sum_probs=47.4
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCccc
Q psy4699 5 KFVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDE 58 (500)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~~ 58 (500)
-|+.|+++++++++++.+++++++|||+|+| |.+|++||++||+.+|++++++.
T Consensus 614 iIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~ 675 (701)
T PTZ00272 614 IIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEE 675 (701)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccc
Confidence 3677888777777788899999999999999 99999999999988999988754
No 29
>PTZ00130 heat shock protein 90; Provisional
Probab=97.03 E-value=0.00071 Score=74.56 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=45.8
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCcc
Q psy4699 5 KFVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDED 57 (500)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~ 57 (500)
-|+.|+.++..+++++.++++|++|||+|+| |..|++||++||..+|++++++
T Consensus 702 ii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~ 762 (814)
T PTZ00130 702 IMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNL 762 (814)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccc
Confidence 3667777766677777799999999999999 9999999999999999998764
No 30
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=96.44 E-value=0.0057 Score=65.78 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=61.2
Q ss_pred CCCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeE
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKF 137 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~ 137 (500)
..+++|.++++..|.. .+||.+. +| ++.+.. ....+||-+...||.|+|||||++||++.|.+.....
T Consensus 191 ~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~ 269 (573)
T PLN02465 191 EQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEH 269 (573)
T ss_pred CeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEE
Confidence 3578998888777764 3688875 34 222211 2234788899999999999999999999999875443
Q ss_pred EEEEcCCHHHHHHHHHHHHH
Q psy4699 138 GSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 138 ~~~~f~~~~~a~~~~~~l~~ 157 (500)
.. ..++++..+.+.++.+
T Consensus 270 ~~--~~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 270 TF--VSNRKEIKKNHKKWLS 287 (573)
T ss_pred EE--EecHHHHHHHHHHHHH
Confidence 32 3567778788777764
No 31
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=93.58 E-value=0.099 Score=51.07 Aligned_cols=135 Identities=14% Similarity=0.104 Sum_probs=66.8
Q ss_pred HHHhhhhccccccccceeeeeeccchHHHHHHHHHHHHHHHHhcCC--ceeeeee-------eeeeeecCCccEEEEEec
Q psy4699 258 AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSI--KFFETSC-------RVTQTYDAGSCIYFYFGF 328 (500)
Q Consensus 258 ~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~-------~~~h~~~~g~~~~~~~~~ 328 (500)
..+|..|.+- .+--+.++-||-+++.++...+-+ .+....+. .+.+|-. +.+.....+. +...+++
T Consensus 129 ~~Lr~~G~Wd-vPHPWlnlfvP~s~i~dF~~~V~~---~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~-vfylv~l 203 (281)
T PF09265_consen 129 EKLRSKGLWD-VPHPWLNLFVPKSRIEDFDRGVFK---GILKDDGNSGPILVYPLNRSKWDTRMSAVIPDED-VFYLVAL 203 (281)
T ss_dssp HHHHHCTTSS-S----EEEEEEHHHHHHHHHHCCC---CCTTTS-S-SEEEEEEEEGGGS-TTSS----SSS-EEEEEEE
T ss_pred HHHHhcCCcc-ccCcceeeecchHHHHHHHHHHHH---HhhccCCCCceEEEEEecccccCCCCcccCCCCC-eEEEEEE
Confidence 3456555322 334477999999999999876432 33222222 2334421 2222222222 2222232
Q ss_pred cCC----CCCCchHHHHHHHHHHHHHHHH--cCCceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCC
Q psy4699 329 NAR----DFENPDQTLTYLQHCARDEIIA--CGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401 (500)
Q Consensus 329 ~~~----~~~~~~~~~~~~~~~~~~~~~~--~gG~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk 401 (500)
... ...+..+.+.+..+.+.+.+.+ +||..+-.|- ..+.+| ..++| ..++.+.+.|+++||++||+||.
T Consensus 204 Lrsa~P~~~~~~l~~l~~qN~~il~~c~~agi~~k~Yl~~~--~t~~dW-~~HFG-~~W~~f~~~K~~yDP~~IL~PGq 278 (281)
T PF09265_consen 204 LRSADPSDGPDDLERLLEQNRRILEFCRKAGIGGKQYLPHY--TTQEDW-RRHFG-PKWERFVERKRRYDPKAILAPGQ 278 (281)
T ss_dssp EE---TTSSCCHHHHHHHHHHHHHHHHHHTT--EEESS-----SSHHHH-HHHHG-HHHHHHHHHHHHH-TT--B-GGG
T ss_pred eCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCceEECCCCC--CCHHHH-HHHhc-hHHHHHHHHHHhCCchhhcCCCC
Confidence 211 1133455566666777777744 4465555554 233344 45667 58999999999999999999985
No 32
>KOG1262|consensus
Probab=90.96 E-value=0.49 Score=47.64 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=59.5
Q ss_pred CCCCCccCccccccCccccccccee-------Ee--cCCCCC---CCCCCCccccccccCccceeeeeeEEEeeecCcce
Q psy4699 68 GDIPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN---EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQ 135 (500)
Q Consensus 68 ~e~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k---~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~ 135 (500)
++.|+||-+..-+-...+.+||-.. +| ++.+.+ ++.--||-=-+==|+||||+.+.+|+|+.|.-+..
T Consensus 153 dDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 153 DDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred ccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceE
Confidence 5578888764444455678899764 55 333222 22223333333349999999999999999998888
Q ss_pred eEEEEEcCCHHHHHHHHHHH
Q psy4699 136 KFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 136 ~~~~~~f~~~~~a~~~~~~l 155 (500)
..-.....+.++..+-.-++
T Consensus 233 kltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 233 KLTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred EEEEEecccHHHHHHHHHhh
Confidence 88888888877655544443
No 33
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=89.55 E-value=0.33 Score=48.42 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=42.1
Q ss_pred CCCccCccccccCccccccccee-------Ee---cC-CCCCCCCCCCccccccccCccceeeeeeEEEeeecC
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---NT-QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g~-~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P 132 (500)
.|+||++.+|++ .+||.+. +| |. ...+...+|++.+.++++ | ||||+++|+|.|.+
T Consensus 130 GTvGGav~mNaG----a~ggei~d~v~~v~vv~~~G~~~~~~~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~ 196 (302)
T PRK14652 130 GTLGGAVAMNAG----TKLGEMKDVVTAVELATADGAGFVPAAALGYAYRTCRLPP-G--AVITRVEVRLRPGD 196 (302)
T ss_pred cchhHHHHHcCC----CCceEhhheEEEEEEECCCCcEEeehhhcCcccceeccCC-C--eEEEEEEEEEecCC
Confidence 477887777764 4677776 33 32 345678899999999986 5 89999999999964
No 34
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=88.79 E-value=0.57 Score=45.87 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHHHHHHHh-hcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCC
Q psy4699 425 PEGPQSCRHIFKTLKAVVDS-AVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGN 493 (500)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~-~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk 493 (500)
++..+.+..--+.+++.|.. .+||.-=..|- ....+| ...+| ..+..+.+-|+.|||++||+||-
T Consensus 213 ~~~l~~l~~qN~~il~~c~~agi~~k~Yl~~~--~t~~dW-~~HFG-~~W~~f~~~K~~yDP~~IL~PGq 278 (281)
T PF09265_consen 213 PDDLERLLEQNRRILEFCRKAGIGGKQYLPHY--TTQEDW-RRHFG-PKWERFVERKRRYDPKAILAPGQ 278 (281)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT--EEESS-----SSHHHH-HHHHG-HHHHHHHHHHHHH-TT--B-GGG
T ss_pred chhHHHHHHHHHHHHHHHHHcCCceEECCCCC--CCHHHH-HHHhc-hHHHHHHHHHHhCCchhhcCCCC
Confidence 44455666666677777731 23333222222 333444 33557 58899999999999999999995
No 35
>PLN02441 cytokinin dehydrogenase
Probab=88.42 E-value=0.84 Score=48.96 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCC-CccCC
Q psy4699 427 GPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASG-NLLLP 497 (500)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpg-k~~~~ 497 (500)
+.+.+.+--+.+++.+. ..|+-+..-=.-...+.+| ...+| ..++.+.+-|+.|||++||+|| ++|++
T Consensus 452 ~~~~~~~~n~~i~~~~~-~~g~~~k~Yl~~~~~~~~W-~~HfG-~~w~~f~~~K~~yDP~~iL~pgq~if~~ 520 (525)
T PLN02441 452 DLEHLLAQNKEILRFCE-KAGIGVKQYLPHYTTQEEW-KRHFG-PKWETFVRRKAKFDPLAILSPGQRIFNR 520 (525)
T ss_pred cHHHHHHHHHHHHHHHH-HcCCceEEcCCCCCCHHHH-HHHhc-chHHHHHHHHhhCCchhhcCCCCccCCC
Confidence 34444444455566663 4444222211111233444 33557 4699999999999999999999 45543
No 36
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=87.64 E-value=3.2 Score=39.91 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=60.3
Q ss_pred ceeeeeeccchHHHHHHHHHHHHHHHHh-cCCc------eeeeeeeeeeeecCCccEEEEEeccCCC-CCCchHHHHHHH
Q psy4699 273 SFETSVPWDKTVLLCINVKKRLTQECTA-LSIK------FFETSCRVTQTYDAGSCIYFYFGFNARD-FENPDQTLTYLQ 344 (500)
Q Consensus 273 ~~d~~vp~~~~~~~~~~~~~~~~~~~~~-~g~~------~~~~~~~~~h~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 344 (500)
-.+.+||.++.+++++++++.+...... .+++ +=...+.-.........+++++.+.... .......++...
T Consensus 64 E~EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~f 143 (257)
T PLN00107 64 QSAISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDAM 143 (257)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHHH
Confidence 4589999999999999887654332000 0222 1111110001111233456655443211 111011344455
Q ss_pred HHHHHH-HHHcCCceeeec-cCCcc-cccccccccCHHHHHHHHHHHHhcCCCCccc
Q psy4699 345 HCARDE-IIACGGSLSHHH-GVGKI-RSHWYPEHVSQVGLELYRSTKQALDPNNMFA 398 (500)
Q Consensus 345 ~~~~~~-~~~~gG~~s~~h-g~g~~-~~~~~~~~~~~~~~~~~~~~K~~~dP~~lln 398 (500)
+++-.. +.++||. +| |--.. ...-+...| ..++-+.++|+++||.|+|.
T Consensus 144 ~eiEqial~kygGR---PHWGK~h~l~~~~l~~lY--Pr~~dFlavR~~lDP~G~F~ 195 (257)
T PLN00107 144 EEIEQMAILKYGAL---PHWGKNRNAAFDGAIAKY--KKAGEFLKVKERLDPEGLFS 195 (257)
T ss_pred HHHHHHHHHhcCCc---CCchhccCCCHHHHHHHC--cCHHHHHHHHHHhCCCCccC
Confidence 555444 6789986 34 11000 011122222 24788999999999999754
No 37
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=86.81 E-value=1.5 Score=42.73 Aligned_cols=114 Identities=13% Similarity=0.184 Sum_probs=57.3
Q ss_pred cceeeeeeccchHHHHHHHHHHHHHHHHhcC-Ccee-eeeee--------eeeeecCCccEEEEEeccCCCCCCchHHHH
Q psy4699 272 DSFETSVPWDKTVLLCINVKKRLTQECTALS-IKFF-ETSCR--------VTQTYDAGSCIYFYFGFNARDFENPDQTLT 341 (500)
Q Consensus 272 ~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~g-~~~~-~~~~~--------~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (500)
...++++|.++..++++++.+.+. +++ +... -+..| .+..++.. .+++.+..... .......+
T Consensus 126 ~~~E~~iP~~~~~~~l~~l~~~~~----~~~~~~~~~pie~R~~~~d~~~Ls~~~~~~-~~~i~~~~~~~--~~~~~~~~ 198 (259)
T PF04030_consen 126 WEMEYAIPIENAPEALRELRALID----KEGGFPVHFPIEVRFVKADDAWLSPAYGRD-TCYIEIHMYRP--MGDPVPYE 198 (259)
T ss_dssp -EEEEEEEGGGHHHHHHHHHHTHH----HHG--GGEEEEEEEEE--B-STT-TTBTS--EEEEEEEE-S---HH---HHH
T ss_pred eeEEEeeCHHHHHHHHHHHHHHHH----HcccCceeEEEEEEEECCChhhcCCCCCCC-EEEEEEEEeCC--ccccccHH
Confidence 356899999999999987765554 344 3211 11112 22334432 34544433211 11111255
Q ss_pred HHHHHHHHHHHHcCCceeeeccCCcc---cccccccccCHHHHHHHHHHHHhcCCCCccc
Q psy4699 342 YLQHCARDEIIACGGSLSHHHGVGKI---RSHWYPEHVSQVGLELYRSTKQALDPNNMFA 398 (500)
Q Consensus 342 ~~~~~~~~~~~~~gG~~s~~hg~g~~---~~~~~~~~~~~~~~~~~~~~K~~~dP~~lln 398 (500)
...+.+.+.+.++||.. | -|.. ....+...| ..++.+.++|+.+||+|++.
T Consensus 199 ~~~~~~e~~~~~~ggRp---H-WgK~~~~~~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~ 252 (259)
T PF04030_consen 199 EFFRAFEQILRKYGGRP---H-WGKNHTLTAEQLRKLY--PRLDDFLAVRKKLDPQGVFL 252 (259)
T ss_dssp HHHHHHHHHHGGGT-EE-----TTS-----HHHHHHT---TTHHHHHHHHHHH-TT-TT-
T ss_pred HHHHHHHHHHHHcCCEE---C-cCcCCCCCHHHHHHHC--cCHHHHHHHHHHhCCCCCCC
Confidence 55666667778999863 3 1111 112233344 25789999999999999865
No 38
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=86.79 E-value=0.18 Score=35.18 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=20.8
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCCCCC
Q psy4699 462 HWYPEHVSQVGLELYRSTKQALDPNNVFAS 491 (500)
Q Consensus 462 ~~~~~~~~~~~~~~~~~iK~~~DP~~ilnp 491 (500)
.+....+| ..++-+++||+.+||+|+|.-
T Consensus 14 ~~~~~yyg-~n~~rL~~iK~~yDP~n~F~~ 42 (47)
T PF08031_consen 14 DWQEAYYG-ENYDRLRAIKRKYDPDNVFRF 42 (47)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHH-TT-TS-S
T ss_pred HHHHHHhc-hhHHHHHHHHHHhCccceeCC
Confidence 45555667 569999999999999999874
No 39
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=79.13 E-value=8.6 Score=41.79 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=61.4
Q ss_pred eeeeeeccchHHHHHHHHHHHHHHHHh-cCCc------eeeee---eeeeeeecCCccEEEEEeccCCCCCCchHHHHHH
Q psy4699 274 FETSVPWDKTVLLCINVKKRLTQECTA-LSIK------FFETS---CRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYL 343 (500)
Q Consensus 274 ~d~~vp~~~~~~~~~~~~~~~~~~~~~-~g~~------~~~~~---~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
.+.+||.++++++++++++.+.+.... ..++ +-... +-+|. +...+++.+......++.-...++..
T Consensus 372 ~EyavP~e~~~~al~~vr~~~~~~~~~~~~~~~~fpievR~v~aDd~wLSp---~rds~~i~~~~~~~~~~~~~~~~~~~ 448 (557)
T TIGR01677 372 TTLSVPVSRFRDFVLDVKRLRDMEPKSLCGVELYNGILIRYVKASPAYLGK---EEDAVDFDFTYYRAKDPLTPRLYEDV 448 (557)
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcccccCceeeecCeEEEEecCCccccCC---CCceEEEEEEEecCCCCcccchHHHH
Confidence 478999999999999887655432100 0122 10111 11222 23345555544322111111224455
Q ss_pred HHHHHHH-HHHcCCceeeec-----cCCcccccccccccCHHHHHHHHHHHHhcCCCCccc
Q psy4699 344 QHCARDE-IIACGGSLSHHH-----GVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFA 398 (500)
Q Consensus 344 ~~~~~~~-~~~~gG~~s~~h-----g~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~lln 398 (500)
.+.+-.. +.++||. +| ... ..-+...|. .++-+.++++++||+++|-
T Consensus 449 f~~~E~i~l~~yggR---PHWGK~h~~~---~~~l~~~YP--~~~dF~alR~~~DP~g~F~ 501 (557)
T TIGR01677 449 IEEIEQMAFFKYGAL---PHWGKNRNLA---FDGVIRKYP--NADKFLKVKDSYDPKGLFS 501 (557)
T ss_pred HHHHHHHHHhhcCCC---CCccccccch---HHHHHHhCC--CHHHHHHHHHhcCCCCccC
Confidence 5566664 7889986 44 111 112233332 5788999999999999754
No 40
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=76.32 E-value=1.3 Score=43.95 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=42.0
Q ss_pred CCCccCccccccCcccccccc-ee-----Ee---cC---CCCCCCCCCCccccccccCccceeeeeeEEEeeecC
Q psy4699 70 IPVAEGEAEDASRMEEGLRGH-LE-----ME---NT---QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~-~~-----vV---g~---~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P 132 (500)
.++||.+.+|++. ||. +. |+ ++ ...+...+|+..+.+++++|++ |||+|+|+|.|.+
T Consensus 126 GTVGGAv~mNAGa-----yG~ei~d~l~~V~~~d~g~v~~~~~~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 126 GSVGGAVYMNAGA-----YGWETAENIVEVVAYDGKKIIRLGKNEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred hhHHHHHHHhCcc-----CchhhheeEEEEEEECCCEEEEEchhhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 4577777777665 777 54 22 22 1345678899999999999877 9999999998863
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=72.18 E-value=4.6 Score=29.72 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=38.4
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+=-+|.++| +.+|.|..+.+...+.......+++.|++.++|..++..+-
T Consensus 9 ~~t~~~l~~~f----~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 9 DVTEEELRDFF----SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp TSSHHHHHHHH----HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH----HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 33334566667 45777777766665556778899999999999999998753
No 42
>KOG4730|consensus
Probab=71.93 E-value=13 Score=38.73 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHHHHccCCCCCcccccCCCCCCCCCCCCccCccccccCccccccccee---Ee-------c-CCCCCCCCCCCcccc
Q psy4699 42 RIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEGLRGHLE---ME-------N-TQHPNEDQAFSEHAQ 110 (500)
Q Consensus 42 ri~~m~~~~l~~~~~~~~~~~~~~~~~e~~~~g~~a~~~sg~~~~~yG~~~---vV-------g-~~~~k~~~G~dl~~L 110 (500)
-|..+-+.||.+.....+. +-+++|.+.+++-|...--.+... +| | ..+...-.-+++-+.
T Consensus 125 Lie~~~~~GlsL~~~~si~--------e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 125 LIEELAKLGLSLPNAPSIS--------EQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred HHHHHHhcCccccCCCcee--------cceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 3334445566665432221 247788877654333222223322 22 2 111222333555555
Q ss_pred ccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHH
Q psy4699 111 STVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEA 147 (500)
Q Consensus 111 fiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~ 147 (500)
---|-|-||||.+|||+++|.=+-..... +.+..+
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~~--v~n~~d 231 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTYV--VTNDSD 231 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEEE--EechHH
Confidence 66688999999999999999855433333 345444
No 43
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=71.10 E-value=6.3 Score=38.18 Aligned_cols=41 Identities=12% Similarity=-0.067 Sum_probs=30.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHH-cCCCccEEEeechHhHhhcc
Q psy4699 137 FGSILFPNFEAGVKCLREIAK-KRCQPSSIRLVDNVQLKAGQ 177 (500)
Q Consensus 137 ~~~~~f~~~~~a~~~~~~l~~-~~~~p~a~el~d~~~~~~~~ 177 (500)
++.++++|.+...++=+.+.. -...|.+.|+|.+...+++.
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~ 42 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAE 42 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH-
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHH
Confidence 467888999988888888753 36789999999999998654
No 44
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=65.98 E-value=40 Score=36.80 Aligned_cols=56 Identities=9% Similarity=0.120 Sum_probs=32.2
Q ss_pred HHHHH-HHHHHHHHHcCCce-eee-ccCC-c----ccccccccccCHHHHHHHHHHHHhcCCCCccc
Q psy4699 340 LTYLQ-HCARDEIIACGGSL-SHH-HGVG-K----IRSHWYPEHVSQVGLELYRSTKQALDPNNMFA 398 (500)
Q Consensus 340 ~~~~~-~~~~~~~~~~gG~~-s~~-hg~g-~----~~~~~~~~~~~~~~~~~~~~~K~~~dP~~lln 398 (500)
|+... ..+..+..++||.. ++- |-.- . .....+...| + ++.+.++++.+||+|+|.
T Consensus 499 ~~~yf~~~~e~i~~~yggRPHWgK~h~~~~~~~~~~~~~~L~~~Y-P--~d~F~~~R~~lDP~g~f~ 562 (573)
T PLN02465 499 FFHYRKKTQRNLWDKYSAYEHWAKIEVPKDKEELEALRERLRKRF-P--VDAFNKARKELDPKGILS 562 (573)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceeccccccchhhcCHHHHHhhC-C--HHHHHHHHHHhCCCCccC
Confidence 44444 55666778899862 111 1100 0 0112233344 3 889999999999999654
No 45
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=62.35 E-value=16 Score=27.03 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 105 FSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 105 ~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
-||..+|-. +|.|+++.+...+....+..+++.|.|.++|.+++...
T Consensus 13 ~~l~~~f~~----~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 13 EDLRNFFSR----FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHHCTT----SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 355666633 45688888887766677899999999999999999863
No 46
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=61.48 E-value=5.7 Score=39.52 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=35.2
Q ss_pred CCCccCccccccCccccccc-cee-------Ee---cCC--CCCCCCCCCccccccccCccceeeeeeEEEeeecC
Q psy4699 70 IPVAEGEAEDASRMEEGLRG-HLE-------ME---NTQ--HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG-~~~-------vV---g~~--~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P 132 (500)
.++||..+++++. || .+. +| |.- +.+.-.++++.....+++ .||||+++|+|.|..
T Consensus 125 GTVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~~~~~e~~~~yR~s~~~~~--~gII~~~~l~l~~~~ 193 (298)
T PRK13905 125 GTVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKTLSNEELGFGYRHSALQEE--GLIVLSATFQLEPGD 193 (298)
T ss_pred cchhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEEEEHHHcCCcCccccCCCC--CEEEEEEEEEEcCCC
Confidence 4677777766543 77 344 33 221 223345566666555554 599999999999983
No 47
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=60.35 E-value=6.8 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.7
Q ss_pred ccCHHHHHHHHHHHHhcCCCCccc
Q psy4699 375 HVSQVGLELYRSTKQALDPNNMFA 398 (500)
Q Consensus 375 ~~~~~~~~~~~~~K~~~dP~~lln 398 (500)
.+| ..++.++++|+..||.+++.
T Consensus 19 yyg-~n~~rL~~iK~~yDP~n~F~ 41 (47)
T PF08031_consen 19 YYG-ENYDRLRAIKRKYDPDNVFR 41 (47)
T ss_dssp HHG-GGHHHHHHHHHHH-TT-TS-
T ss_pred Hhc-hhHHHHHHHHHHhCccceeC
Confidence 344 45899999999999999886
No 48
>smart00360 RRM RNA recognition motif.
Probab=44.38 E-value=28 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 100 NEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 100 k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
...+.-|+.++| ..+|-|.++.+.-.+. ......+++.|.+.++|..++..+
T Consensus 6 ~~~~~~~l~~~f----~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~ 58 (71)
T smart00360 6 PDVTEEELRELF----SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL 58 (71)
T ss_pred cccCHHHHHHHH----HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc
Confidence 334445667777 2567778877765443 345668899999999999987753
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=43.41 E-value=40 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=27.8
Q ss_pred cceeeeeeE-EEeee-c--CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 117 TLGVITKVV-LKIRP-Q--PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 117 TLGIITe~t-lkl~p-~--P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
-+|-|+++. +.+-+ . +..+..+++.|.+.++|..|+..|-
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~ 58 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN 58 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 456666664 33322 1 4456789999999999999998753
No 50
>smart00362 RRM_2 RNA recognition motif.
Probab=42.17 E-value=36 Score=24.26 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=36.3
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--++.++| ..+|-|..+.+...+ ......+++.|.+.++|.+++..+
T Consensus 8 ~~~~~~~~l~~~~----~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 8 PPDVTEEDLKELF----SKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred CCcCCHHHHHHHH----HhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHh
Confidence 3334444666666 367777777766555 455678899999999999988753
No 51
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=41.28 E-value=30 Score=37.28 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCC
Q psy4699 432 RHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGN 493 (500)
Q Consensus 432 ~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk 493 (500)
..+...+.++.. ..|...-+||.+|-.- -. .| .+++-=+.+||.|.||||-
T Consensus 501 ~~~~~~m~~~l~-~rga~ypaehnvghly---~a---~~----~l~~~y~~~dptn~~npgi 551 (564)
T PRK11183 501 HALKHEMLELLD-ARGAEYPAEHNVGHLY---KA---KP----ALKKFYRELDPTNSFNPGI 551 (564)
T ss_pred HHHHHHHHHHHH-hcCCcCCcccccCccc---cC---Ch----HHHHHHHhcCCccCCCCcc
Confidence 456677888875 7899999999999842 11 22 3455556789999999993
No 52
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=40.71 E-value=42 Score=32.68 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCC
Q psy4699 341 TYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401 (500)
Q Consensus 341 ~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk 401 (500)
.++.+++.+...+.|+.--.||.+|-. | .+-..+.+.=+.+||.+-+|||-
T Consensus 232 ~alk~~ml~lLd~RGAeYPAEHNVGHL---Y-------~Akp~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 232 HALKHEMLALLDARGAEYPAEHNVGHL---Y-------HAKPALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp HHHHHHHHHHHHHCT-BSSSSS--TTT---S----------HHHHHHHHHH-TT--BSTTT
T ss_pred HHHHHHHHHHHHHhCCCCCcccCCCcc---c-------cCCHHHHHHHHhcCCCcCCCCCc
Confidence 466778888888999999999999933 2 12356677778899999999984
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=36.92 E-value=60 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=26.6
Q ss_pred cceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 117 TLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 117 TLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.+|-|.++++ .+.. ...+++.|.+.++|..+++.|-
T Consensus 7 ~fG~V~~i~~--~~~~--~~~a~V~f~~~~~A~~a~~~l~ 42 (56)
T PF13893_consen 7 KFGEVKKIKI--FKKK--RGFAFVEFASVEDAQKAIEQLN 42 (56)
T ss_dssp TTS-EEEEEE--ETTS--TTEEEEEESSHHHHHHHHHHHT
T ss_pred CcccEEEEEE--EeCC--CCEEEEEECCHHHHHHHHHHhC
Confidence 5677877665 3332 5788899999999999999864
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=36.10 E-value=49 Score=28.98 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 97 QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 97 ~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
.++.+.+=-||..+| ..+|-|+.+.+...+. ...+.++++.|.+.++|..|+..+
T Consensus 41 nL~~~~te~~L~~~F----~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 41 GLSWGTDDASLRDAF----AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred CCCCCCCHHHHHHHH----hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 345566667888888 4578899888877664 356789999999999999999875
No 55
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=34.16 E-value=42 Score=33.82 Aligned_cols=47 Identities=13% Similarity=0.329 Sum_probs=36.5
Q ss_pred CccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+|.++| +.+|-|+++.|...+ -...+.+.+|.|.+.++|..|+..|-
T Consensus 285 ~L~~~F----~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln 332 (352)
T TIGR01661 285 VLWQLF----GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN 332 (352)
T ss_pred HHHHHH----HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC
Confidence 345555 467899998887766 34566789999999999999998754
No 56
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=27.22 E-value=57 Score=16.92 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.3
Q ss_pred cccCccceeeeeeEE
Q psy4699 112 TVEQGTLGVITKVVL 126 (500)
Q Consensus 112 iGSEGTLGIITe~tl 126 (500)
.|--|.|.|||+-|+
T Consensus 2 sgvpgalavvtrrti 16 (17)
T PF08077_consen 2 SGVPGALAVVTRRTI 16 (17)
T ss_pred CCCCceEEEEEEeec
Confidence 355689999998765
No 57
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=26.53 E-value=1.1e+02 Score=21.77 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=33.5
Q ss_pred CCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 105 FSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 105 ~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
-++.+.|-+ +|-|.++.+...+.......+++.|.+.++|..++..+
T Consensus 14 ~~i~~~~~~----~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~ 60 (74)
T cd00590 14 EDLRELFSK----FGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEAL 60 (74)
T ss_pred HHHHHHHHh----cCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 345555633 36677777776555455778899999999999998874
No 58
>PF05554 Novirhabdo_Nv: Viral hemorrhagic septicemia virus non-virion protein; InterPro: IPR008720 This family consists of several viral hemorrhagic septicemia virus non-virion (Nv) proteins. The NV protein is a nonstructural protein absent from mature virions although it is present in infected cells. The function of this protein is unknown [].
Probab=25.72 E-value=65 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.3
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCCCCCccCCCC
Q psy4699 466 EHVSQVGLELYRSTKQALDPNNVFASGNLLLPSD 499 (500)
Q Consensus 466 ~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~~~ 499 (500)
-.+.|-.+.-|-.-+-.|||.|-||++ |++||
T Consensus 10 ~sfsplvlremithrl~fdpsnylncd--~drsd 41 (122)
T PF05554_consen 10 TSFSPLVLREMITHRLTFDPSNYLNCD--IDRSD 41 (122)
T ss_pred cccchHHHHHHHHHhcccCcccccccc--cchhh
Confidence 356777888888889999999999987 44444
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=25.71 E-value=81 Score=32.13 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=36.5
Q ss_pred CCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 103 QAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 103 ~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+=-||..+| ..+|.|.++.+.... ....+.+++|.|.+.++|.+|+..|-
T Consensus 206 tee~L~~~F----~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 206 TDDQLDTIF----GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred cHHHHHHHH----HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 334677777 578888887775433 23445789999999999999999853
No 60
>KOG0105|consensus
Probab=25.32 E-value=66 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=37.2
Q ss_pred CccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQ 161 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~~~~~ 161 (500)
|+-.|| =-.|-|+++.||..|.|+. ++++.|+|..+|-+++.. +.+..
T Consensus 22 eieDlF----yKyg~i~~ieLK~r~g~pp--fafVeFEd~RDAeDAiyg--RdGYd 69 (241)
T KOG0105|consen 22 EIEDLF----YKYGRIREIELKNRPGPPP--FAFVEFEDPRDAEDAIYG--RDGYD 69 (241)
T ss_pred cHHHHH----hhhcceEEEEeccCCCCCC--eeEEEecCccchhhhhhc--ccccc
Confidence 445566 3678999999999998764 567889999999999876 55543
No 61
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=25.06 E-value=70 Score=34.80 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=34.4
Q ss_pred ccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 116 GTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
..+|-|+++.+..-.....+.++++.|.+.++|.+++..+-
T Consensus 307 ~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~ 347 (562)
T TIGR01628 307 SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMH 347 (562)
T ss_pred HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhc
Confidence 46889999988777666677899999999999999998753
No 62
>KOG0114|consensus
Probab=24.80 E-value=78 Score=26.18 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=40.6
Q ss_pred CCCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 97 QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 97 ~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.++...+.-++-.|| |-.|-|.++.+=..+. .+.++++.++|..+|-.+...|.
T Consensus 25 NLp~~ITseemydlF----Gkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114|consen 25 NLPFKITSEEMYDLF----GKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred cCCccccHHHHHHHh----hcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhc
Confidence 344455555556777 8899999888777765 55677778899999999999864
No 63
>KOG0122|consensus
Probab=21.63 E-value=1.1e+02 Score=29.27 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=44.6
Q ss_pred CCCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 97 QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 97 ~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.++-+-...||..|| ..+|-||++-|---.. -..+.++++.|.+-++|.+++..|-
T Consensus 196 NLsed~~E~dL~eLf----~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln 252 (270)
T KOG0122|consen 196 NLSEDMREDDLEELF----RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN 252 (270)
T ss_pred cCccccChhHHHHHh----hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc
Confidence 344456778898898 8999999998876553 3566788999999999999998754
No 64
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=20.47 E-value=1.3e+02 Score=23.02 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHhhcCCCchHHHHHHHHHHhhccc-chHHHHHHHHHHH
Q psy4699 2 VIQKFVTEYTKINADKNDKAVKDLVNLLFETSLL-PQVHAARIHRMIK 48 (500)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l-~~~fa~ri~~m~~ 48 (500)
|.||+..|-.-.-+-.+| .+..|--||..- |++.+.+|..|+.
T Consensus 19 VAQkLEqLE~vmg~~~~d----~ls~lasDTVhyNPSDLs~WvesMLs 62 (73)
T PF12041_consen 19 VAQKLEQLEMVMGNAQED----GLSQLASDTVHYNPSDLSSWVESMLS 62 (73)
T ss_dssp HHHHHHHHHHHHTT-------------HCCHCCS-TTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccc----hHHHhhhhhhccChHHHHHHHHHHHH
Confidence 678888887766543322 256666777777 9999999999986
Done!