Query psy4699
Match_columns 500
No_of_seqs 362 out of 2899
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 23:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bby_A Alkyldihydroxyacetoneph 100.0 3.4E-47 1.2E-51 414.8 27.6 335 69-403 307-658 (658)
2 2uuu_A Alkyldihydroxyacetoneph 100.0 2.1E-43 7.3E-48 378.3 26.3 331 70-403 239-584 (584)
3 3pm9_A Putative oxidoreductase 100.0 1.4E-40 4.6E-45 349.0 22.3 299 70-403 150-476 (476)
4 1f0x_A DLDH, D-lactate dehydro 100.0 6.8E-31 2.3E-35 279.6 14.7 305 70-405 149-562 (571)
5 1e8g_A Vanillyl-alcohol oxidas 100.0 4.2E-29 1.4E-33 267.6 22.1 304 70-405 174-549 (560)
6 1wvf_A 4-cresol dehydrogenase 99.9 1.4E-26 4.7E-31 246.5 23.3 305 70-405 158-515 (520)
7 2exr_A Cytokinin dehydrogenase 99.9 3.8E-25 1.3E-29 235.0 8.2 311 69-403 165-519 (524)
8 1w1o_A Cytokinin dehydrogenase 99.8 1E-20 3.5E-25 201.8 11.5 316 70-402 173-531 (534)
9 3pm9_A Putative oxidoreductase 99.8 5.6E-19 1.9E-23 185.1 7.4 146 336-495 330-476 (476)
10 2uuu_A Alkyldihydroxyacetoneph 99.6 6.2E-16 2.1E-20 165.6 6.6 84 410-495 501-584 (584)
11 4bby_A Alkyldihydroxyacetoneph 99.5 8.8E-15 3E-19 159.4 7.4 87 408-495 571-658 (658)
12 2vfr_A Xylitol oxidase, aldito 99.4 2.6E-13 8.7E-18 140.6 5.9 269 69-399 113-413 (422)
13 1e8g_A Vanillyl-alcohol oxidas 99.1 2.6E-11 8.9E-16 129.7 5.7 105 380-496 436-548 (560)
14 1wvf_A 4-cresol dehydrogenase 99.1 9.4E-11 3.2E-15 124.5 6.9 107 379-497 404-515 (520)
15 1f0x_A DLDH, D-lactate dehydro 99.0 1.6E-10 5.4E-15 123.0 5.4 74 407-498 490-563 (571)
16 2yvs_A Glycolate oxidase subun 98.6 9.2E-09 3.1E-13 96.1 2.4 72 71-145 42-128 (219)
17 3q6m_A Heat shock protein HSP 98.6 2.8E-08 9.5E-13 100.8 5.0 82 5-87 352-442 (448)
18 3hjc_A Heat shock protein 83-1 98.2 9.2E-07 3.1E-11 90.1 4.1 53 5-57 368-428 (444)
19 1w1o_A Cytokinin dehydrogenase 98.1 3.4E-06 1.2E-10 89.6 8.3 83 407-495 446-533 (534)
20 1hsk_A UDP-N-acetylenolpyruvoy 98.0 3.6E-08 1.2E-12 98.1 -8.7 142 70-242 142-305 (326)
21 3fw9_A Reticuline oxidase; BI- 98.0 1.7E-06 5.7E-11 90.8 2.0 86 70-155 144-241 (495)
22 2exr_A Cytokinin dehydrogenase 97.9 3.3E-06 1.1E-10 89.3 3.0 46 453-498 469-522 (524)
23 4feh_A Oxidoreductase DPRE1; a 97.8 6.7E-06 2.3E-10 85.9 3.1 87 69-155 140-239 (481)
24 2bvf_A 6-hydroxy-D-nicotine ox 97.8 1.2E-05 4.2E-10 83.7 3.9 87 70-156 133-234 (459)
25 3vte_A Tetrahydrocannabinolic 97.7 1.3E-05 4.3E-10 84.4 2.4 87 70-156 152-250 (518)
26 3tsh_A Pollen allergen PHL P 4 97.6 1E-05 3.5E-10 85.2 0.4 85 71-155 154-249 (500)
27 3rja_A Carbohydrate oxidase; p 97.6 2.2E-05 7.6E-10 81.9 2.9 85 70-154 135-232 (473)
28 1zr6_A Glucooligosaccharide ox 97.6 1.6E-05 5.4E-10 83.7 1.7 82 72-153 141-234 (503)
29 1sf8_A Chaperone protein HTPG; 97.6 4.4E-05 1.5E-09 64.3 3.8 40 6-49 79-126 (126)
30 2i0k_A Oxidoreductase; MIX alp 96.7 0.00042 1.4E-08 73.8 1.3 80 69-151 138-240 (561)
31 2wdx_A Putative hexose oxidase 96.6 0.0011 3.8E-08 69.9 4.4 74 70-143 154-258 (523)
32 2ipi_A Aclacinomycin oxidoredu 96.5 0.0016 5.4E-08 68.7 4.6 65 70-134 152-246 (521)
33 3js8_A Cholesterol oxidase; ch 96.2 0.0012 4.2E-08 69.2 1.4 78 70-150 133-235 (540)
34 2y3s_A TAML; oxidoreductase; H 96.1 0.0028 9.5E-08 66.9 3.4 73 70-142 155-259 (530)
35 3pop_A GILR oxidase; FAD bindi 96.0 0.0013 4.5E-08 68.9 0.7 74 70-143 131-234 (501)
36 3tx1_A UDP-N-acetylenolpyruvoy 95.2 0.0032 1.1E-07 61.9 -0.1 57 70-133 148-217 (322)
37 3i99_A UDP-N-acetylenolpyruvoy 94.3 0.04 1.4E-06 54.8 5.2 83 70-158 126-229 (357)
38 2vfr_A Xylitol oxidase, aldito 94.1 0.043 1.5E-06 56.1 5.2 62 426-492 352-414 (422)
39 2gqt_A UDP-N-acetylenolpyruvyl 88.6 0.12 4.2E-06 49.2 1.2 71 70-157 107-189 (268)
40 1uxy_A MURB, uridine diphospho 83.8 0.84 2.9E-05 44.9 4.3 82 70-157 110-213 (340)
41 2o1u_A Endoplasmin; GRP94, HSP 81.4 0.97 3.3E-05 48.4 4.0 31 5-35 605-635 (666)
42 4feh_A Oxidoreductase DPRE1; a 77.0 5.8 0.0002 40.9 8.1 108 274-398 355-471 (481)
43 2cge_A ATP-dependent molecular 75.6 1.3 4.3E-05 44.7 2.5 32 5-36 349-381 (405)
44 2dnh_A Bruno-like 5, RNA bindi 71.1 3.9 0.00013 32.0 4.1 55 98-156 23-77 (105)
45 2ywk_A Putative RNA-binding pr 69.9 3.5 0.00012 31.5 3.5 55 98-156 24-78 (95)
46 2do4_A Squamous cell carcinoma 69.2 4.5 0.00015 31.4 4.0 55 98-156 25-79 (100)
47 3ulh_A THO complex subunit 4; 68.6 4 0.00014 32.1 3.6 55 98-156 37-91 (107)
48 3s8s_A Histone-lysine N-methyl 67.7 5.6 0.00019 31.8 4.3 52 101-156 17-69 (110)
49 1x5o_A RNA binding motif, sing 67.5 7.6 0.00026 30.8 5.2 55 98-156 33-87 (114)
50 2d9p_A Polyadenylate-binding p 66.7 6.3 0.00022 30.6 4.4 54 98-156 23-76 (103)
51 2bvf_A 6-hydroxy-D-nicotine ox 66.2 8.3 0.00028 39.4 6.3 36 462-497 421-456 (459)
52 2do0_A HnRNP M, heterogeneous 65.9 5.5 0.00019 31.7 4.0 55 98-156 23-77 (114)
53 2pe8_A Splicing factor 45; RRM 64.5 8 0.00027 30.6 4.6 62 106-171 29-94 (105)
54 3bs9_A Nucleolysin TIA-1 isofo 60.9 8.4 0.00029 28.7 4.0 54 99-156 15-69 (87)
55 2cqc_A Arginine/serine-rich sp 60.5 7.6 0.00026 29.5 3.7 55 98-156 23-78 (95)
56 4fxv_A ELAV-like protein 1; RN 60.3 7.5 0.00026 30.3 3.7 55 98-156 27-82 (99)
57 2cg9_A ATP-dependent molecular 60.0 1.8 6.1E-05 46.5 -0.2 32 5-36 621-653 (677)
58 2cpz_A CUG triplet repeat RNA- 60.0 7.5 0.00026 31.0 3.7 55 98-156 33-88 (115)
59 3tsh_A Pollen allergen PHL P 4 59.4 8.6 0.00029 39.7 5.0 27 471-497 469-495 (500)
60 2cq3_A RNA-binding protein 9; 59.4 7.7 0.00026 30.1 3.6 54 98-156 23-76 (103)
61 4f25_A Polyadenylate-binding p 59.1 8.3 0.00028 30.9 3.9 53 99-156 14-66 (115)
62 1p27_B RNA-binding protein 8A; 58.1 9.6 0.00033 29.7 4.0 55 98-156 31-86 (106)
63 2ipi_A Aclacinomycin oxidoredu 57.8 3.8 0.00013 42.8 1.9 35 463-498 486-520 (521)
64 3r27_A HnRNP L, heterogeneous 57.3 6 0.0002 31.3 2.6 50 99-157 30-79 (100)
65 3ns6_A Eukaryotic translation 56.7 5.9 0.0002 30.9 2.5 47 106-156 28-75 (100)
66 3md1_A Nuclear and cytoplasmic 56.3 9.9 0.00034 28.0 3.6 54 99-156 10-64 (83)
67 2fy1_A RNA-binding motif prote 56.1 4.8 0.00017 32.4 1.9 53 99-155 16-68 (116)
68 2krb_A Eukaryotic translation 55.9 3.8 0.00013 30.5 1.1 46 105-155 22-67 (81)
69 2cq0_A Eukaryotic translation 55.9 11 0.00039 29.1 4.1 54 98-155 23-77 (103)
70 2dhg_A TRNA selenocysteine ass 55.8 6.2 0.00021 30.7 2.5 54 99-156 18-72 (104)
71 2dgv_A HnRNP M, heterogeneous 55.7 11 0.00039 28.3 4.0 54 98-156 16-69 (92)
72 1x4d_A Matrin 3; structural ge 55.5 9.1 0.00031 30.2 3.4 47 101-156 27-73 (102)
73 1x4e_A RNA binding motif, sing 55.4 12 0.00041 27.7 4.0 54 99-156 14-68 (85)
74 1jmt_A Splicing factor U2AF 35 55.3 13 0.00043 29.3 4.3 41 116-156 49-89 (104)
75 2j76_E EIF-4B, EIF4B, eukaryot 54.9 8 0.00027 30.0 3.0 52 98-155 27-80 (100)
76 2dgo_A Cytotoxic granule-assoc 54.6 9.4 0.00032 30.3 3.5 55 98-156 23-78 (115)
77 3nmr_A Cugbp ELAV-like family 54.5 16 0.00053 31.0 5.1 54 99-156 104-157 (175)
78 2dnz_A Probable RNA-binding pr 54.3 10 0.00036 28.7 3.6 54 99-156 14-68 (95)
79 1s79_A Lupus LA protein; RRM, 54.3 7.5 0.00026 30.6 2.7 51 99-153 20-70 (103)
80 1x4f_A Matrin 3; structural ge 54.2 9.4 0.00032 30.8 3.3 51 98-157 33-84 (112)
81 3ue2_A Poly(U)-binding-splicin 52.5 22 0.00076 28.7 5.4 58 116-173 47-111 (118)
82 2e5h_A Zinc finger CCHC-type a 52.3 6.5 0.00022 29.9 2.0 54 98-155 24-78 (94)
83 2kxn_B Transformer-2 protein h 52.2 12 0.0004 30.8 3.7 55 98-156 54-109 (129)
84 3md3_A Nuclear and cytoplasmic 50.4 15 0.00052 30.7 4.3 50 103-156 13-62 (166)
85 1x4a_A Splicing factor, argini 50.0 10 0.00035 29.8 2.9 53 98-156 30-82 (109)
86 2jrs_A RNA-binding protein 39; 49.7 15 0.00052 28.9 3.9 55 98-156 34-89 (108)
87 2dnq_A RNA-binding protein 4B; 49.6 9.1 0.00031 28.9 2.5 47 99-156 17-63 (90)
88 1whw_A Hypothetical protein ri 49.3 6.4 0.00022 30.3 1.6 54 99-156 17-71 (99)
89 2ek1_A RNA-binding protein 12; 49.2 10 0.00035 28.8 2.8 55 98-156 23-78 (95)
90 4a8x_A RNA-binding protein wit 48.9 7 0.00024 29.2 1.7 54 99-156 13-68 (88)
91 2cqi_A Nucleolysin TIAR; RNA r 48.8 11 0.00037 29.2 2.8 54 98-156 23-76 (103)
92 2cph_A RNA binding motif prote 48.7 8.6 0.0003 30.0 2.3 54 98-155 23-78 (107)
93 2kt5_A RNA and export factor-b 48.6 10 0.00034 30.7 2.7 55 98-156 43-97 (124)
94 2cpf_A RNA binding motif prote 48.3 12 0.00041 28.6 3.1 53 99-155 14-70 (98)
95 3mdf_A Peptidyl-prolyl CIS-tra 48.3 9.9 0.00034 28.1 2.5 54 99-156 16-70 (85)
96 1x5p_A Negative elongation fac 47.9 9.6 0.00033 29.2 2.4 46 102-156 25-70 (97)
97 1zr6_A Glucooligosaccharide ox 47.5 6.1 0.00021 41.0 1.4 35 463-498 445-479 (503)
98 2dit_A HIV TAT specific factor 47.2 12 0.00041 29.7 2.9 44 106-156 42-85 (112)
99 2cpi_A CCR4-NOT transcription 46.7 21 0.00073 28.1 4.4 54 99-156 24-84 (111)
100 2x1f_A MRNA 3'-END-processing 46.5 9.8 0.00033 29.1 2.2 54 99-156 11-65 (96)
101 3lqv_A PRE-mRNA branch site pr 46.2 8.8 0.0003 30.5 2.0 52 99-156 17-68 (115)
102 2jvo_A Nucleolar protein 3; nu 46.1 13 0.00043 29.4 2.9 48 98-156 39-86 (108)
103 1wi8_A EIF-4B, eukaryotic tran 46.0 7.1 0.00024 30.4 1.3 52 98-155 23-76 (104)
104 2la6_A RNA-binding protein FUS 45.9 18 0.00062 27.7 3.8 54 99-156 22-84 (99)
105 2cq1_A PTB-like protein L; RRM 45.4 15 0.00053 28.7 3.3 49 99-156 24-72 (101)
106 1uaw_A Mouse-musashi-1; RNP-ty 45.3 7.9 0.00027 28.0 1.4 54 98-155 8-62 (77)
107 2xnq_A Nuclear polyadenylated 45.1 15 0.00051 28.2 3.1 44 101-155 34-77 (97)
108 1u6f_A Tcubp1, RNA-binding pro 45.0 12 0.0004 30.9 2.6 55 98-156 50-105 (139)
109 2d9o_A DNAJ (HSP40) homolog, s 44.9 12 0.0004 29.5 2.4 42 105-154 32-73 (100)
110 1x5s_A Cold-inducible RNA-bind 44.7 11 0.00038 29.1 2.3 55 98-156 20-75 (102)
111 1h2v_Z 20 kDa nuclear CAP bind 44.7 16 0.00053 30.9 3.5 54 98-155 47-101 (156)
112 1wez_A HnRNP H', FTP-3, hetero 44.6 14 0.00049 28.8 2.9 51 98-153 23-73 (102)
113 2e5i_A Heterogeneous nuclear r 44.5 19 0.00065 29.5 3.8 47 101-156 36-83 (124)
114 1wex_A Hypothetical protein (r 44.4 14 0.00049 29.1 2.9 51 98-157 23-73 (104)
115 2cqg_A TDP-43, TAR DNA-binding 43.9 20 0.00068 27.6 3.7 53 98-154 23-76 (103)
116 2dnm_A SRP46 splicing factor; 43.9 7 0.00024 30.4 1.0 55 98-156 21-76 (103)
117 3beg_B Splicing factor, argini 43.8 20 0.00068 28.5 3.8 49 98-156 24-72 (115)
118 2la4_A Nuclear and cytoplasmic 43.8 12 0.0004 28.9 2.3 49 99-156 36-84 (101)
119 2dgp_A Bruno-like 4, RNA bindi 43.6 8.5 0.00029 30.0 1.5 55 98-156 21-76 (106)
120 1p1t_A Cleavage stimulation fa 42.9 13 0.00046 28.7 2.5 53 99-155 17-70 (104)
121 3v4m_A Splicing factor U2AF 65 42.9 23 0.00079 27.8 4.0 64 106-173 31-99 (105)
122 3nmr_A Cugbp ELAV-like family 42.6 19 0.00064 30.4 3.7 54 99-156 12-68 (175)
123 3s7r_A Heterogeneous nuclear r 42.5 17 0.00059 26.9 3.1 51 99-153 20-71 (87)
124 2kvi_A Nuclear polyadenylated 42.4 17 0.00057 27.8 3.0 45 101-156 22-66 (96)
125 2cqp_A RNA-binding protein 12; 42.3 12 0.0004 28.7 2.1 54 98-155 23-77 (98)
126 2cq2_A Hypothetical protein LO 41.9 8.3 0.00028 31.3 1.1 47 101-156 38-84 (114)
127 1sjq_A Polypyrimidine tract-bi 41.8 13 0.00043 29.6 2.2 49 99-156 25-73 (105)
128 2hvz_A Splicing factor, argini 41.6 12 0.00041 28.8 2.0 50 100-157 10-59 (101)
129 3zzy_A Polypyrimidine tract-bi 41.4 25 0.00084 29.1 4.0 47 102-156 40-87 (130)
130 2dgx_A KIAA0430 protein; RRM d 41.4 11 0.00036 29.0 1.7 52 99-156 18-73 (96)
131 1x5u_A Splicing factor 3B subu 40.9 8.5 0.00029 30.0 1.0 54 98-155 23-77 (105)
132 2cq4_A RNA binding motif prote 40.9 11 0.00036 30.0 1.6 54 98-156 33-87 (114)
133 3s6e_A RNA-binding protein 39; 40.7 24 0.00081 28.4 3.7 55 116-173 39-95 (114)
134 1wf1_A RNA-binding protein RAL 40.6 12 0.00041 29.4 1.9 48 98-156 35-83 (110)
135 2db1_A Heterogeneous nuclear r 40.4 14 0.00047 29.7 2.3 52 98-153 25-79 (118)
136 2err_A Ataxin-2-binding protei 40.3 11 0.00038 29.7 1.7 54 98-156 37-90 (109)
137 3ucg_A Polyadenylate-binding p 39.7 15 0.0005 27.4 2.3 52 99-155 15-67 (89)
138 2wbr_A GW182, gawky, LD47780P; 39.6 19 0.00064 27.8 2.7 50 98-156 15-64 (89)
139 2bz2_A Negative elongation fac 39.6 18 0.00061 29.3 2.9 46 102-156 49-94 (121)
140 2dgs_A DAZ-associated protein 39.6 19 0.00064 27.6 2.9 51 99-153 19-70 (99)
141 2nlw_A Eukaryotic translation 39.3 10 0.00035 29.7 1.3 46 105-155 36-81 (105)
142 2ad9_A Polypyrimidine tract-bi 39.2 17 0.00056 29.6 2.6 50 98-156 39-88 (119)
143 1oo0_B CG8781-PA, drosophila Y 39.2 17 0.00058 28.4 2.7 55 98-156 34-89 (110)
144 2cqb_A Peptidyl-prolyl CIS-tra 38.9 12 0.00039 29.0 1.5 55 98-156 20-75 (102)
145 1wg5_A Heterogeneous nuclear r 38.6 18 0.0006 28.2 2.6 53 98-154 23-76 (104)
146 1fxl_A Paraneoplastic encephal 38.3 23 0.00079 29.5 3.6 54 99-156 11-65 (167)
147 2wdx_A Putative hexose oxidase 38.3 10 0.00034 39.5 1.4 29 468-497 495-523 (523)
148 3ex7_B RNA-binding protein 8A; 37.9 13 0.00043 30.1 1.7 54 99-156 31-85 (126)
149 1x4h_A RNA-binding protein 28; 37.8 16 0.00056 28.5 2.3 54 98-155 23-77 (111)
150 2lkz_A RNA-binding protein 5; 37.7 13 0.00046 28.7 1.7 54 99-156 18-74 (95)
151 2mss_A Protein (musashi1); RNA 37.2 12 0.00041 26.9 1.3 51 99-153 8-59 (75)
152 2dgt_A RNA-binding protein 30; 37.1 16 0.00054 27.6 2.0 47 99-156 19-65 (92)
153 2lmi_A GRSF-1, G-rich sequence 36.9 14 0.00048 29.0 1.7 55 98-153 19-73 (107)
154 1whx_A Hypothetical protein ri 36.7 14 0.00047 29.4 1.7 49 99-156 19-67 (111)
155 2dgu_A Heterogeneous nuclear r 36.7 12 0.00042 29.0 1.4 48 98-156 19-66 (103)
156 2cpj_A Non-POU domain-containi 36.5 17 0.00059 27.8 2.2 50 98-156 23-72 (99)
157 2cpy_A RNA-binding protein 12; 36.4 9.8 0.00034 30.3 0.7 53 98-154 23-76 (114)
158 1rk8_A CG8781-PA, CG8781-PA pr 36.1 31 0.0011 29.4 4.0 55 98-156 80-135 (165)
159 2div_A TRNA selenocysteine ass 36.1 18 0.00063 27.5 2.3 54 98-155 17-72 (99)
160 1sjr_A Polypyrimidine tract-bi 36.0 28 0.00094 30.1 3.6 62 102-170 58-123 (164)
161 2y3s_A TAML; oxidoreductase; H 35.8 12 0.00042 39.0 1.5 29 468-497 499-527 (530)
162 3smz_A Protein raver-1, ribonu 35.7 30 0.001 32.1 4.2 47 106-156 201-247 (284)
163 1b7f_A Protein (SXL-lethal pro 35.5 51 0.0017 27.4 5.4 52 101-156 100-152 (168)
164 2hgl_A HNRPF protein, heteroge 34.9 22 0.00075 29.6 2.7 52 98-153 52-106 (136)
165 2f3j_A RNA and export factor b 34.8 11 0.00037 33.0 0.8 55 98-156 96-150 (177)
166 2dng_A Eukaryotic translation 34.8 24 0.00083 27.1 2.9 52 98-155 23-75 (103)
167 3sde_A Paraspeckle component 1 34.7 32 0.0011 31.7 4.2 51 102-156 108-158 (261)
168 1x4g_A Nucleolysin TIAR; struc 34.6 16 0.00055 28.6 1.8 50 98-156 33-82 (109)
169 1why_A Hypothetical protein ri 34.5 16 0.00056 27.8 1.8 50 98-156 25-74 (97)
170 3fw9_A Reticuline oxidase; BI- 34.2 49 0.0017 34.0 5.8 27 471-497 467-493 (495)
171 2dh8_A DAZ-associated protein 34.1 26 0.00088 27.1 2.9 53 98-154 24-77 (105)
172 1x4c_A Splicing factor, argini 34.0 18 0.00062 28.3 2.0 48 98-155 23-70 (108)
173 2lxi_A RNA-binding protein 10; 33.9 5.9 0.0002 30.3 -1.0 54 98-155 9-64 (91)
174 2cpe_A RNA-binding protein EWS 33.5 19 0.00064 28.4 2.0 54 99-156 24-86 (113)
175 1x5t_A Splicing factor 3B subu 33.5 12 0.00039 28.5 0.7 53 99-155 14-68 (96)
176 2dnp_A RNA-binding protein 14; 33.4 16 0.00054 27.5 1.4 47 99-156 18-64 (90)
177 3pop_A GILR oxidase; FAD bindi 33.0 14 0.00047 38.2 1.4 29 467-496 472-500 (501)
178 3egn_A RNA-binding protein 40; 32.6 29 0.00098 28.6 3.1 54 99-156 54-113 (143)
179 2rs2_A Musashi-1, RNA-binding 32.6 19 0.00065 28.4 1.9 53 98-154 33-86 (109)
180 2khc_A Testis-specific RNP-typ 32.1 19 0.00063 28.6 1.8 54 98-155 48-102 (118)
181 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.8 19 0.00065 29.4 1.8 54 98-155 71-125 (140)
182 3p5t_L Cleavage and polyadenyl 31.7 22 0.00074 26.7 2.0 52 101-156 12-66 (90)
183 2voo_A Lupus LA protein; RNA-b 31.5 35 0.0012 30.1 3.6 53 98-154 117-169 (193)
184 2ytc_A PRE-mRNA-splicing facto 31.3 19 0.00064 26.5 1.6 48 99-155 21-68 (85)
185 2i2y_A Fusion protein consists 31.0 27 0.00093 29.1 2.7 51 98-156 81-131 (150)
186 3rja_A Carbohydrate oxidase; p 30.5 29 0.00098 35.5 3.3 31 466-497 441-471 (473)
187 3dxb_A Thioredoxin N-terminall 30.4 1.3E+02 0.0044 26.6 7.5 59 116-174 151-216 (222)
188 1fxl_A Paraneoplastic encephal 30.2 44 0.0015 27.7 4.0 52 101-156 99-151 (167)
189 2xs2_A Deleted in azoospermia- 29.7 16 0.00054 28.2 0.9 51 99-153 18-68 (102)
190 2i0k_A Oxidoreductase; MIX alp 29.6 2.3E+02 0.0079 29.4 10.2 25 273-297 380-406 (561)
191 2cqd_A RNA-binding region cont 29.5 25 0.00085 27.8 2.1 53 98-154 25-78 (116)
192 4f02_A Polyadenylate-binding p 29.5 46 0.0016 29.5 4.2 49 103-156 116-164 (213)
193 2a3j_A U1 small nuclear ribonu 29.3 25 0.00087 28.8 2.1 39 116-156 55-93 (127)
194 2e44_A Insulin-like growth fac 29.1 19 0.00066 27.2 1.3 51 99-156 24-75 (96)
195 2ki2_A SS-DNA binding protein 28.8 13 0.00045 27.8 0.3 51 100-155 11-62 (90)
196 2qfj_A FBP-interacting repress 28.5 53 0.0018 28.7 4.4 54 99-156 134-188 (216)
197 1x4b_A Heterogeneous nuclear r 28.4 32 0.0011 27.1 2.6 53 98-154 35-88 (116)
198 1iqt_A AUF1, heterogeneous nuc 27.7 10 0.00034 27.3 -0.6 51 99-153 8-59 (75)
199 3vte_A Tetrahydrocannabinolic 27.1 25 0.00085 36.5 2.1 34 463-497 479-512 (518)
200 3md3_A Nuclear and cytoplasmic 26.8 49 0.0017 27.3 3.7 54 99-156 96-150 (166)
201 2cpd_A Apobec-1 stimulating pr 26.6 32 0.0011 26.2 2.2 49 99-156 24-72 (99)
202 2g4b_A Splicing factor U2AF 65 26.3 36 0.0012 28.5 2.7 52 101-156 105-157 (172)
203 3pgw_S U1-70K; protein-RNA com 25.8 35 0.0012 34.5 2.9 55 98-156 110-165 (437)
204 2kn4_A Immunoglobulin G-bindin 25.7 21 0.00072 30.0 1.0 55 98-156 78-133 (158)
205 2dnl_A Cytoplasmic polyadenyla 25.5 18 0.00062 28.7 0.6 52 99-155 17-72 (114)
206 3tyt_A Heterogeneous nuclear r 25.4 35 0.0012 30.3 2.6 54 99-156 132-186 (205)
207 1l3k_A Heterogeneous nuclear r 24.1 56 0.0019 28.0 3.6 53 98-154 21-74 (196)
208 1wel_A RNA-binding protein 12; 24.0 31 0.0011 27.6 1.8 52 98-153 33-85 (124)
209 2qfj_A FBP-interacting repress 24.0 46 0.0016 29.1 3.1 55 98-156 36-91 (216)
210 3tyt_A Heterogeneous nuclear r 23.9 43 0.0015 29.7 2.8 46 103-156 18-63 (205)
211 2dgw_A Probable RNA-binding pr 23.9 60 0.002 24.0 3.3 51 98-153 18-68 (91)
212 1fjc_A Nucleolin RBD2, protein 23.6 48 0.0016 24.9 2.7 50 98-155 24-73 (96)
213 2m2b_A RNA-binding protein 10; 22.6 33 0.0011 27.9 1.6 54 98-156 31-87 (131)
214 2e5g_A U6 snRNA-specific termi 22.5 59 0.002 24.3 3.0 47 99-153 17-63 (94)
215 2jwn_A Embryonic polyadenylate 21.9 79 0.0027 25.0 3.9 53 98-155 44-97 (124)
216 1nu4_A U1A RNA binding domain; 21.8 19 0.00065 27.3 -0.0 52 99-156 17-72 (97)
217 2cpx_A Hypothetical protein FL 21.7 18 0.00061 28.5 -0.2 55 98-156 33-88 (115)
218 2e5j_A Methenyltetrahydrofolat 21.3 37 0.0013 25.7 1.6 51 98-156 27-77 (97)
219 3n9u_C Cleavage and polyadenyl 21.2 49 0.0017 28.0 2.5 54 98-155 63-119 (156)
220 2dis_A Unnamed protein product 20.8 21 0.00073 27.7 0.1 51 101-155 19-72 (109)
221 1b7f_A Protein (SXL-lethal pro 20.4 44 0.0015 27.8 2.1 54 99-156 12-66 (168)
No 1
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=3.4e-47 Score=414.80 Aligned_cols=335 Identities=49% Similarity=0.884 Sum_probs=275.4
Q ss_pred CCCCccCccccccCccccccccee-------Ee--------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecCc
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME--------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPR 133 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV--------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~ 133 (500)
.+|+||+++++++|+.+.+||.++ || +++.+|+++||||.+||+||||||||||++||||.|+|+
T Consensus 307 ~aTIGG~iAtna~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~ 386 (658)
T 4bby_A 307 FSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE 386 (658)
T ss_dssp TCBHHHHHHHTCCCTTHHHHCCHHHHEEEEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCS
T ss_pred ccEEeehhhcCCCCCCccCcCCHHHheeeEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCc
Confidence 478999999999999999999998 44 456789999999999999999999999999999999999
Q ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCC-CcchhhhhhhhhhhhhhhhcCCCCccccee
Q psy4699 134 CQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAA 212 (500)
Q Consensus 134 ~~~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (500)
.+.++++.|+|++++++++++|.++++.|+++|+||...+.......|. ...+....+.....++.++.+.+.+..+.+
T Consensus 387 ~~~~~~~~f~d~~~a~~av~~i~~~~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 466 (658)
T 4bby_A 387 YQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVA 466 (658)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEE
T ss_pred cccccccccCCchhhhhhHHHHHHcCCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHH
Confidence 9999999999999999999999999999999999999988766544332 112222333444445556667666655566
Q ss_pred eEEEecCHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhhhhhHHHHhhhhccccccccceeeeeeccchHHHHHHHHH
Q psy4699 213 TVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 292 (500)
Q Consensus 213 ~l~~eg~~~~v~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~ 292 (500)
.+.++|+.+.+..+.+.+.+++..+++..........+|..++..+++++.....+...+.+|+++|++++++++..+.+
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 77889998889888899999999888866555555566666777778888776666666788999999999999999998
Q ss_pred HHHHHHHhcCCceeeee-eeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCcccccc
Q psy4699 293 RLTQECTALSIKFFETS-CRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHW 371 (500)
Q Consensus 293 ~~~~~~~~~g~~~~~~~-~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~ 371 (500)
.+.+.+...++.+..+. ++++|.+++|+++|+++.++..+..++.+.++.+.+.+.+.+.++||++|+|||+|+.|.+|
T Consensus 547 ~l~~~~~~~g~~~~~~~~~~~~h~~dg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~GGsiS~EHGIG~~k~~~ 626 (658)
T 4bby_A 547 RIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQW 626 (658)
T ss_dssp HHHHHHHHTTCSSCCEEEEEEEEECSSEEEEEEEEEEECTTCSCHHHHHHHHHHHHHHHHHHTTCCSCSSSCCTTTSGGG
T ss_pred HHHHHHHhcCccccccceEEEEEEeccCceEEEEecCCcCCchhHHHHHHHHHHHHHHHHHHcCCeEEEcccchHHHHHH
Confidence 89888888888765333 78889999998888888776554556677888899999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHhcCCCCcccCCCcc
Q psy4699 372 YPEHVSQVGLELYRSTKQALDPNNMFADGKEE 403 (500)
Q Consensus 372 ~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~ 403 (500)
+..++++..+++|+++|+.|||+|||||||++
T Consensus 627 l~~~~g~~~l~lmr~IK~a~DP~gILNPGKll 658 (658)
T 4bby_A 627 LKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658 (658)
T ss_dssp HHHHHCHHHHHHHHHHHHHHSTTCSSCSCCCC
T ss_pred HHHhcCHHHHHHHHHHHHHhCcccCCCCCCCC
Confidence 99999999999999999999999999999985
No 2
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=2.1e-43 Score=378.26 Aligned_cols=331 Identities=24% Similarity=0.394 Sum_probs=240.6
Q ss_pred CCCccCccccccCccccccccee-------Ee---cC----CCCCCCCCCCccccccccCccceeeeeeEEEeeecCcce
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---NT----QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQ 135 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g~----~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~ 135 (500)
+++||+++++++|+.+.+||.++ || |. ..+|+.+||||.++|+||||||||||+++|||.|.|+..
T Consensus 239 ~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~ 318 (584)
T 2uuu_A 239 STLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAV 318 (584)
T ss_dssp CBHHHHHHHTCCCTTHHHHCCHHHHEEEEEEEETTEEECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEE
T ss_pred eeEeeeccCCCCcccccCcCcHHHheeeEEEEeCCCCEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccce
Confidence 58899999999999999999887 44 32 235778999999999999999999999999999999999
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcccceeeEE
Q psy4699 136 KFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVL 215 (500)
Q Consensus 136 ~~~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 215 (500)
.++++.|+++++++++++++.++++.|+++|+||+..+.......+.......+++.+...|+..+.+.+.+..+.+++.
T Consensus 319 ~~~~~~f~~~~~a~~~~~~~~~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llve 398 (584)
T 2uuu_A 319 EYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIG 398 (584)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCCccEEEEEE
Confidence 99999999999999999999989999999999999877643332221111111112221223322234432233456778
Q ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhhh-hhHHHHhhhhccccccccceeeeeeccchHHHHHHHHHHH
Q psy4699 216 FEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLT-YIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 294 (500)
Q Consensus 216 ~eg~~~~v~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~ 294 (500)
++|+.+.++++.+++.++++++++... ..+..+.|..| +..+++++..+..+.+...+|++||+++++++++.+++.+
T Consensus 399 ~~g~~~~v~~~~~~~~~~~~~~g~~~~-~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l 477 (584)
T 2uuu_A 399 FEGPKKVVDFHRTSVFDILSKNAAFGL-GSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTF 477 (584)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTTCEEE-EEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EecChHHHHHHHHHHHHHHHHCCCccc-hHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHH
Confidence 899888889999999999999887643 23455678754 5566777765545545567899999999999999999888
Q ss_pred HHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCccccccccc
Q psy4699 295 TQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPE 374 (500)
Q Consensus 295 ~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~~~~ 374 (500)
.+.+.++|+...+|+ |++|+|++|+++|+++.++.. .+++.++++++.+.+.+.+.++||++|+|||+|+.|.+|+..
T Consensus 478 ~~~~~~~g~~~~~~~-h~gH~gd~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~gGsiS~EHGiG~~k~~~l~~ 555 (584)
T 2uuu_A 478 VKHFKDQGIPAWICA-HISHTYTNGVCLYFIFASKQN-ENKDMAQYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTR 555 (584)
T ss_dssp HHHHHTTTCCEEEEE-EEEEEETTEEEEEEEEEEECC-TTCCTHHHHHHHHHHHHHHHHTTCCCC---------------
T ss_pred HhHHHhcCCeeEEEE-EEEeecCCCcEEEEEeccCCC-ChhhHHHHHHHHHHHHHHHHHcCCcEEecccCCcccHHHHHH
Confidence 888999999875554 888999988778877665432 234567788899999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCcccCCCcc
Q psy4699 375 HVSQVGLELYRSTKQALDPNNMFADGKEE 403 (500)
Q Consensus 375 ~~~~~~~~~~~~~K~~~dP~~llnpgk~~ 403 (500)
++++..+++|+++|+.|||++||||||++
T Consensus 556 ~~g~~~~~lmr~iK~a~DP~gIlNPGki~ 584 (584)
T 2uuu_A 556 YATRGWINVYRSLKETIDPKDICNPRKLI 584 (584)
T ss_dssp ---CTHHHHHHHHHHHHCTTCCBSCCCC-
T ss_pred hcCHHHHHHHHHHHHHcCCCcCCCCCCCC
Confidence 99999999999999999999999999974
No 3
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.4e-40 Score=348.98 Aligned_cols=299 Identities=16% Similarity=0.154 Sum_probs=239.0
Q ss_pred CCCccCccccccCccccccccee-------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecCc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPR 133 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~ 133 (500)
++++|+++++++|..+.+||.++ || +.+..|+++||||.++|+||||||||||++||||.|.|+
T Consensus 150 ~tvGG~ia~nagG~~~~~yG~~~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~ 229 (476)
T 3pm9_A 150 CTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPR 229 (476)
T ss_dssp CBHHHHHHHTCCCTTHHHHCCHHHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCS
T ss_pred EEEccccCCCCCCCcccccCcHHHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCc
Confidence 68889999999999999999987 44 345678999999999999999999999999999999999
Q ss_pred ceeEEEEEcCCHHHHHHHHHHHHH-cCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCc--ccc
Q psy4699 134 CQKFGSILFPNFEAGVKCLREIAK-KRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDD--EMC 210 (500)
Q Consensus 134 ~~~~~~~~f~~~~~a~~~~~~l~~-~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 210 (500)
...++++.|+|++++.++++++.+ .+..|+++|+||+..++++.+. +. .+.+.+ ..+
T Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~g~~p~a~El~d~~~~~~~~~~-~~-------------------~~~~~~~~~~~ 289 (476)
T 3pm9_A 230 AVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRH-AN-------------------NRDPLEARYPW 289 (476)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHHGGGEEEEEEEEHHHHHHHHHH-TT-------------------CCCCSSSCCSE
T ss_pred eeEEEEEEcCCHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHHHhc-cC-------------------CCCCCCccCCe
Confidence 999999999999999999999875 5899999999999999876432 10 011111 123
Q ss_pred eeeEEEecCHHHHHHHHHHHHHHHHHcCCCC-----CCccchhhhhhhhhhHHH-HhhhhccccccccceeeeeeccchH
Q psy4699 211 AATVLFEGDPEDVKNNEDKIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAY-IRDFACDYYFIGDSFETSVPWDKTV 284 (500)
Q Consensus 211 ~~~l~~eg~~~~v~~~~~~l~~i~~~~~~~~-----~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~d~~vp~~~~~ 284 (500)
.+++.++|+.+.++++.+++.+++.+.+... .+.++.++.|+.|..... .+..+ .....|++||+++++
T Consensus 290 ~llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~~R~~~~~~~~~~g-----~~~~~Dv~vP~~~l~ 364 (476)
T 3pm9_A 290 YVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEG-----GSIKHDISVPVAAVP 364 (476)
T ss_dssp EEEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTHHHHTGGGC-----CEECCEEECCGGGHH
T ss_pred EEEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHHHHHHHHHHHhhcC-----CceeEEEEeeHHHHH
Confidence 4667788876667788888888887776532 123456678988765432 23222 135789999999999
Q ss_pred HHHHHHHHHHHHHHHhc--CCceeeeeeeeeeeecCCccEEEEEeccCC-CCCCchHHHHHHHHHHHHHHHHcCCceeee
Q psy4699 285 LLCINVKKRLTQECTAL--SIKFFETSCRVTQTYDAGSCIYFYFGFNAR-DFENPDQTLTYLQHCARDEIIACGGSLSHH 361 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~ 361 (500)
++++.++ ++++++ ++...+|| |++++ |+|+.+.++.. ++.+..++++++.+.+.+.+.++||++|+|
T Consensus 365 ~~~~~~~----~~~~~~~~~~~~~~~g----H~gdG--nlH~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~E 434 (476)
T 3pm9_A 365 QFIEQAN----AAVVALIPGARPVPFG----HLGDG--NIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAE 434 (476)
T ss_dssp HHHHHHH----HHHHHHSTTCEEEEEE----EGGGT--EEEEEEECCTTCCHHHHHTTHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHHH----HHHHHhcCCCeEEEEE----EeCCC--ceEEEEecCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 9998654 556677 88888888 98875 58998776431 111113457788899999999999999999
Q ss_pred ccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcc
Q psy4699 362 HGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEE 403 (500)
Q Consensus 362 hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~ 403 (500)
||+|+.|.+|+..++++..+++|+++|+.|||++||||||++
T Consensus 435 HGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNPGki~ 476 (476)
T 3pm9_A 435 HGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 476 (476)
T ss_dssp SCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBSTTSCC
T ss_pred ccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCcC
Confidence 999999999999999999999999999999999999999975
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.97 E-value=6.8e-31 Score=279.61 Aligned_cols=305 Identities=11% Similarity=0.064 Sum_probs=205.2
Q ss_pred CCCccCccccccCccccccccee-----------------------Ee---------cCCC------------CCCCCCC
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-----------------------ME---------NTQH------------PNEDQAF 105 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-----------------------vV---------g~~~------------~k~~~G~ 105 (500)
++++|+++++++|..+.+||.++ || +... .|+++||
T Consensus 149 ~tvGG~ia~nagG~~~~~yG~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy 228 (571)
T 1f0x_A 149 ASVIGGICNNSGGSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDY 228 (571)
T ss_dssp CBHHHHHHTTCCCSCTTSCSSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTH
T ss_pred ceecccccCCCCcccccCCCchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCc
Confidence 47889999999999999999765 11 1122 2789999
Q ss_pred -----------------Cccccc--cccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH-HcCCCccEE
Q psy4699 106 -----------------SEHAQS--TVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA-KKRCQPSSI 165 (500)
Q Consensus 106 -----------------dl~~Lf--iGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~-~~~~~p~a~ 165 (500)
||.+|| +|||||||| |++||||.|+|+...++++.|+|++++.++++++. ..+..|+++
T Consensus 229 ~~~~~~~d~~~p~~~~~Dl~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~ 307 (571)
T 1f0x_A 229 VHRVRDIEADTPARYNADPDRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAG 307 (571)
T ss_dssp HHHHHCTTCSSCSCCTTCGGGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEE
T ss_pred ccccccccccccccccccHHHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEE
Confidence 999999 999999999 99999999999999999999999999999999988 478899999
Q ss_pred EeechHhHhhcccc----------CCCC---------cchhhhhhhhh-------hhhhh------------hhcCCCCc
Q psy4699 166 RLVDNVQLKAGQFF----------RPDP---------GYLELLTDGLK-------KLYVT------------KILGFRDD 207 (500)
Q Consensus 166 el~d~~~~~~~~~~----------~p~~---------~~~~~~~~~~~-------~~~~~------------~~~~~~~~ 207 (500)
|+||+..++++.+. .+.. .+++.+.+.+. ...++ +++++...
T Consensus 308 E~~d~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~k~~~~~~~~~~p~l~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~ 387 (571)
T 1f0x_A 308 EYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDK 387 (571)
T ss_dssp EEEEHHHHHHHC---------------------------------------------------------CCHHHHHHHHH
T ss_pred EEECHHHHHHHHHhcccccccccccCcccccchhcccchhhhhhcccccccccchhhhhhhhhhccccccchhhhccccc
Confidence 99999999876533 1100 00000000000 00000 00000101
Q ss_pred ccceeeEEEecCHHHHHHHHHHHHHHHHHcCCCCC--CccchhhhhhhhhhH----HHHhhhhcc-ccccccceeeeeec
Q psy4699 208 EMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYII----AYIRDFACD-YYFIGDSFETSVPW 280 (500)
Q Consensus 208 ~~~~~~l~~eg~~~~v~~~~~~l~~i~~~~~~~~~--~~~~~~~~~~~r~~~----~~~~~~~~~-~~~~~~~~d~~vp~ 280 (500)
..+.+++.+.|+.+. ...+.+.++++.+++... ..++.++.|..|+.. |.+|+.... .+ ....+|++||+
T Consensus 388 ~~~~llve~~g~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~ 464 (571)
T 1f0x_A 388 YEHHLLLKMAGDGVG--EAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRR 464 (571)
T ss_dssp CSEEEEEEECTTHHH--HHHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCT
T ss_pred CceEEEEEEecCcHH--HHHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecH
Confidence 112355566665432 123445556666544322 233445566666643 456653322 11 13578999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEeccCCCCCCchHHHHHHHHHHHHHHHHcCCceee
Q psy4699 281 DKTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSH 360 (500)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~ 360 (500)
++++++ +.+. +.++++++...+|| |+++ | ++|+.+.+... . + ++++.+.+.+.+.++||++|+
T Consensus 465 ~~l~~~-~~~~----~~l~~~~~~~~~~G----H~g~-g-~~H~~~~~~~~--~-~---~~~i~~~~~~~v~~~GGsisa 527 (571)
T 1f0x_A 465 NDTEWY-EHLP----PEIDSQLVHKLYYG----HFMC-Y-VFHQDYIVKKG--V-D---VHALKEQMLELLQQRGAQYPA 527 (571)
T ss_dssp TCSCCS-CCCC----HHHHTTEEEEEEEE----ETTT-T-EEEEEEEEETT--C-C---HHHHHHHHHHHHHHTTCBSCS
T ss_pred HHhHHH-HHHH----HHHHhhCccceeEE----EEcC-C-ceEEeeecCCc--h-h---HHHHHHHHHHHHHHcCCeEEe
Confidence 999999 7654 44456777777788 8866 4 37887666311 1 1 567888999999999999999
Q ss_pred eccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccC
Q psy4699 361 HHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMD 405 (500)
Q Consensus 361 ~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~ 405 (500)
|||+|.. |. .+.. |+++|+.|||+++|||||+++.
T Consensus 528 EHGvG~~---~~----~~~~---m~~iK~~~DP~~ilNPGk~~t~ 562 (571)
T 1f0x_A 528 EHNVGHL---YK----APET---LQKFYRENDPTNSMNPGIGKTS 562 (571)
T ss_dssp SSCCTTT---SC----CCHH---HHHHHHHHCTTCCBSTTTTTCC
T ss_pred eccCCcc---cC----CHHH---HHHHHHHhCCCCCCCCCcCcCC
Confidence 9999976 21 1222 9999999999999999999754
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=99.96 E-value=4.2e-29 Score=267.63 Aligned_cols=304 Identities=13% Similarity=0.063 Sum_probs=204.6
Q ss_pred CCCccCccccccCccccccccee-------Ee---------cCCCCCC-------------------------CCCCCcc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---------NTQHPNE-------------------------DQAFSEH 108 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---------g~~~~k~-------------------------~~G~dl~ 108 (500)
++++|+++++++|.. +||.++ || +....++ ..||||.
T Consensus 174 ~tigG~~~~~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~Gy~l~ 251 (560)
T 1e8g_A 174 GSVLGNAVERGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYID 251 (560)
T ss_dssp SBHHHHHHTTCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCG
T ss_pred cchhhhccCCCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCCcchh
Confidence 456677777877765 899975 44 2222333 4599999
Q ss_pred ccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHH---HHHHHcCCCccEEEeechHh----HhhccccCC
Q psy4699 109 AQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCL---REIAKKRCQPSSIRLVDNVQ----LKAGQFFRP 181 (500)
Q Consensus 109 ~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~---~~l~~~~~~p~a~el~d~~~----~~~~~~~~p 181 (500)
+||+ ||||||||++||||.|.|+...++++.|+|++++.+++ +++.++++.|+++|+||... +........
T Consensus 252 ~L~~--~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~~~~~l~~~~~~~~ 329 (560)
T 1e8g_A 252 GLFS--QSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSS 329 (560)
T ss_dssp GGGS--SSSSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHHHHHHHCCGGGTCC
T ss_pred cccc--cCcEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHHHhhhhhhhhhhcc
Confidence 9996 57999999999999999999999999999999976654 55667899999999999984 111101000
Q ss_pred C-CcchhhhhhhhhhhhhhhhcCCCCcccceeeEEEecCHHHHHHHHHHHHHHHHHcCCCCC----Cccchhhhhhhhhh
Q psy4699 182 D-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA----GESNGRRGYMLTYI 256 (500)
Q Consensus 182 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~v~~~~~~l~~i~~~~~~~~~----~~~~~~~~~~~r~~ 256 (500)
. ....... + ..++. +.+... +.+.+.++|+.+.++.+.+.+.++++++++... ...+...+|. |+.
T Consensus 330 ~~~~~p~~~---~-~~l~~---~~~~~~-~~l~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~ 400 (560)
T 1e8g_A 330 RTEPLSDEE---L-DKIAK---QLNLGR-WNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDK 400 (560)
T ss_dssp CSSCCCHHH---H-HHHHH---HHTCCS-EEEEEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHH
T ss_pred CCCCCCHHH---H-HHHHh---hcCCCc-eEEEEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHh
Confidence 0 0000000 0 00111 111122 246677899988899999999999998887432 1222344564 432
Q ss_pred H----HHHhhhh---ccccccccceeeeeec--cchHHHHHHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEEe
Q psy4699 257 I----AYIRDFA---CDYYFIGDSFETSVPW--DKTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFG 327 (500)
Q Consensus 257 ~----~~~~~~~---~~~~~~~~~~d~~vp~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~~ 327 (500)
. +.+.... +..+....++++++|+ ++++++++.+ +++++++|+++.++| |++++ ++|+.+.
T Consensus 401 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~----~~~~~~~g~~~~~~g----H~gdG--nlH~~i~ 470 (560)
T 1e8g_A 401 TMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVT----KKRCQEAGLDFIGTF----TVGMR--EMHHIVC 470 (560)
T ss_dssp HTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHH----HHHHHHHTCCCCEEE----EECSS--CEEEEEE
T ss_pred hcccCchhhhhccccccCCCceEEEeeecCCCHHHHHHHHHHH----HHHHHHcCCceEEEE----EecCC--eEEEEec
Confidence 2 2222221 1111123346899999 9999999865 466788999988888 98775 4788763
Q ss_pred --ccCCCCCCchHHHHHHHHHHHHHHHHcCCceeeeccCCccccc--cc---cccc---CHHHHHHHHHHHHhcCCCCcc
Q psy4699 328 --FNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSH--WY---PEHV---SQVGLELYRSTKQALDPNNMF 397 (500)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~--~~---~~~~---~~~~~~~~~~~K~~~dP~~ll 397 (500)
++.. +++..++++++.+++.+.+ .|||+|..|.+ |+ ..++ ++..+++|+++|+.|||++||
T Consensus 471 ~~~~~~-~~~~~~~~~~~~~~l~~~~--------~eHGiG~~k~~~~~l~~~~~~~~~~g~~~~~lm~~iK~~~DP~gIL 541 (560)
T 1e8g_A 471 IVFNKK-DLIQKRKVQWLMRTLIDDC--------AANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGII 541 (560)
T ss_dssp EEEETT-CHHHHHHHHHHHHHHHHHH--------HHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHHHHCTTCCB
T ss_pred ccCCCC-CHHHHHHHHHHHHHHHHHH--------HHcCCcccccchhHHHHHHHHhccCCHHHHHHHHHHHHHcCccCCC
Confidence 4322 1222334444444444443 48999999988 88 7788 788999999999999999999
Q ss_pred cCCCcccC
Q psy4699 398 ADGKEEMD 405 (500)
Q Consensus 398 npgk~~~~ 405 (500)
||||++..
T Consensus 542 NPGk~~~~ 549 (560)
T 1e8g_A 542 APGKSGVW 549 (560)
T ss_dssp CTTGGGCC
T ss_pred CCCccccC
Confidence 99999854
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=99.95 E-value=1.4e-26 Score=246.45 Aligned_cols=305 Identities=12% Similarity=0.084 Sum_probs=200.6
Q ss_pred CCCccCccccccCccccccccee-------Ee---c------CCCC---------CCCCCCCccccccccCccceeeeee
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---N------TQHP---------NEDQAFSEHAQSTVEQGTLGVITKV 124 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g------~~~~---------k~~~G~dl~~LfiGSEGTLGIITe~ 124 (500)
.+++|+.+++++|.. +||.++ || | .... |...||||.+||+|| ||||||++
T Consensus 158 ~~igG~~~~~g~g~~--~yG~~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g~--~lGiVt~~ 233 (520)
T 1wvf_A 158 AGPVGNTMDRGVGYT--PYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQA--NYGICTKM 233 (520)
T ss_dssp CCHHHHHHTTCBCSS--TTCBGGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTS--SSCEEEEE
T ss_pred eeeeecccCCCcCCc--cccchhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccCC--ceEEEEEE
Confidence 456677777777775 899986 44 2 1111 224699999999886 99999999
Q ss_pred EEEeeecCcceeEEEEEcCCHHHHH---HHHHHHHHcCCCccEEEeechHhHhhccccCCC-----C-cchhhhhhhhhh
Q psy4699 125 VLKIRPQPRCQKFGSILFPNFEAGV---KCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD-----P-GYLELLTDGLKK 195 (500)
Q Consensus 125 tlkl~p~P~~~~~~~~~f~~~~~a~---~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~-----~-~~~~~~~~~~~~ 195 (500)
+|||.|.|+.+..+++.|++++++. ++++++.++++.|+++|+||+..+.......+. . .......+.
T Consensus 234 ~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 310 (520)
T 1wvf_A 234 GFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQ--- 310 (520)
T ss_dssp EEECEECCSEEEEEEEEECCGGGHHHHHHHHHHHHHTTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHH---
T ss_pred EEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHHHHcCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHH---
Confidence 9999999999999999999987754 477777788999999999999977544221100 0 000000000
Q ss_pred hhhhhhcCCCCcccceeeEEEecCHHHHHHHHHHHHHHHHHcCCCCCCc---cchhhhhhhhhhHH----HHhhhh---c
Q psy4699 196 LYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGE---SNGRRGYMLTYIIA----YIRDFA---C 265 (500)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~eg~~~~v~~~~~~l~~i~~~~~~~~~~~---~~~~~~~~~r~~~~----~~~~~~---~ 265 (500)
++. +...+.+ .+.+.++|+.++++++.+.+.++++++++..... .+....|..|.... ...... +
T Consensus 311 -~~~---~~~~~~~-~l~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~~~~~~~~~~ 385 (520)
T 1wvf_A 311 -MQK---DTGMGAW-NLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNW 385 (520)
T ss_dssp -HHH---HHCCCSE-EEEEEEEESHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGS
T ss_pred -HHH---hcCCCce-EEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEecccchhhhHHHHHHHhhccCchhhhhccccc
Confidence 000 0011222 4566788988889999999999998887643211 12234565553221 001110 0
Q ss_pred cccccccceeeeeec--cchHHHHHHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEEEE--eccCCCCCCchHHHH
Q psy4699 266 DYYFIGDSFETSVPW--DKTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYF--GFNARDFENPDQTLT 341 (500)
Q Consensus 266 ~~~~~~~~~d~~vp~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~~~--~~~~~~~~~~~~~~~ 341 (500)
..+......++++|. ++++++++.+ +++++++++.+..+| |++++ ++|+.+ .++.. ++++.++++
T Consensus 386 ~~~~~~~~~d~~vp~~~~~l~~~~~~~----~~~~~~~~~~~~~~g----h~gdG--nlH~~i~~~~~~~-~~~~~~~~~ 454 (520)
T 1wvf_A 386 RGGGGSMWFAPVSEARGSECKKQAAMA----KRVLHKYGLDYVAEF----IVAPR--DMHHVIDVLYDRT-NPEETKRAD 454 (520)
T ss_dssp SCTEEEEEECBEEESCHHHHHHHHHHH----HHHHHHTTCCCCEEE----EECSS--EEEEEEEEEEETT-CHHHHHHHH
T ss_pred cCCCceEEeccccCCCHHHHHHHHHHH----HHHHHHcCCCeeEee----cccCc--ceeeeeccccCCC-CHHHHHHHH
Confidence 000112236788888 8999999755 566778999877777 88775 478865 34321 111223344
Q ss_pred HHHHHHHHHHHHcCCceeeeccCCcccc--ccc---ccccCHHHHHHHHHHHHhcCCCCcccCCCcccC
Q psy4699 342 YLQHCARDEIIACGGSLSHHHGVGKIRS--HWY---PEHVSQVGLELYRSTKQALDPNNMFADGKEEMD 405 (500)
Q Consensus 342 ~~~~~~~~~~~~~gG~~s~~hg~g~~~~--~~~---~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~ 405 (500)
++.+++.+.+ .+||+|..|. +++ ..++++..+++|+++|+.|||++||||||++.+
T Consensus 455 ~~~~~~~~~~--------~ehG~G~~k~~~~~~~~~~~~~g~~~~~lmr~IK~a~DP~~IlNPGki~~~ 515 (520)
T 1wvf_A 455 ACFNELLDEF--------EKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGID 515 (520)
T ss_dssp HHHHHHHHHH--------HHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHCTTCCBCTTGGGCC
T ss_pred HHHHHHHHHH--------HHcCCCccccChhHhhhhhhhcCHHHHHHHHHHHHHcCCCCCCCCCcCCCC
Confidence 4554554443 4688888774 576 788899999999999999999999999999855
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=99.91 E-value=3.8e-25 Score=234.97 Aligned_cols=311 Identities=11% Similarity=0.079 Sum_probs=194.0
Q ss_pred CCCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeE
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKF 137 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~ 137 (500)
.+++||+++++++|..+.+||.++ || .+.+.+ ...|+||.++|+||||||||||++||||.|.|+...+
T Consensus 165 ~~tiGG~va~ng~G~~~~~yG~~~d~V~~l~vV~~dG~v~~~~~~~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~ 244 (524)
T 2exr_A 165 GLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRW 244 (524)
T ss_dssp SSBHHHHHTTCCCCTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEE
T ss_pred ceeecccCCCCCCcccccccCcHhhhEEEEEEEecCCeEEEECCCCChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEE
Confidence 478999999999999999999987 44 222221 2367999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCC-cccceeeEEE
Q psy4699 138 GSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRD-DEMCAATVLF 216 (500)
Q Consensus 138 ~~~~f~~~~~a~~~~~~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 216 (500)
+.+.|++++++.++++.|+..+.. +++|++|...+....... ..+...........+ ....+. +..+.+++.+
T Consensus 245 ~~~~f~~~~~~~~~~~~l~~~~~~-~~~e~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~p~~~~~~~llve~ 318 (524)
T 2exr_A 245 IRVVYTEFDEFTQDAEWLVSQKNE-SSFDYVEGFVFVNGADPV--NGWPTVPLHPDHEFD---PTRLPQSCGSVLYCLEL 318 (524)
T ss_dssp EEEEESCHHHHHHHHHHHHTSCTT-SSCSEEEEEEEESSCCTT--TSGGGSCSSTTSCCC---GGGSCTTCCSEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCc-chhHhhchhhhhcchhhh--hhhhhcccccccccc---hhcCCcccccEEEEEEE
Confidence 999999999999999999877776 788999986654321100 000000000000000 011221 1123345666
Q ss_pred -----ec-CHHHHHHHHHHHHHHHHHcCCCCCCcc---------chhhhhhhhhhHHHHhhhhc-cccccccceeeeeec
Q psy4699 217 -----EG-DPEDVKNNEDKIYSIAKRYGGIPAGES---------NGRRGYMLTYIIAYIRDFAC-DYYFIGDSFETSVPW 280 (500)
Q Consensus 217 -----eg-~~~~v~~~~~~l~~i~~~~~~~~~~~~---------~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~d~~vp~ 280 (500)
+| +.++++++++++.++++.+++...... .....|.. |+... ..+. + +.|++||+
T Consensus 319 ~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~-------R~~~~~a~~~-~-~~Dv~VP~ 389 (524)
T 2exr_A 319 GLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIA-------KENGTWETPH-P-WLNLFVSK 389 (524)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHH-------HHTTCSSSCC-C-CEEEEEEH
T ss_pred EeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHh-------hhhcccccCC-C-eeEEEECH
Confidence 67 678889888888888877766532110 01112433 33221 1111 1 35999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCcee-eee-------eeeeeeecCCccEEEEEeccCCCCC----CchHHHHHHHHHHH
Q psy4699 281 DKTVLLCINVKKRLTQECTALSIKFF-ETS-------CRVTQTYDAGSCIYFYFGFNARDFE----NPDQTLTYLQHCAR 348 (500)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-------~~~~h~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 348 (500)
++++++++.+++.. ...-++... ++- +|.+|.+..|+++++.+.+.....+ ...+.+.+....+.
T Consensus 390 s~l~~~~~~v~~~~---~gdgn~h~~i~~~~~~~~~~~r~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 466 (524)
T 2exr_A 390 RDIGDFNRTVFKEL---VKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIV 466 (524)
T ss_dssp HHHHHHHHHCCCCC---TTTCCSSCEEEEEEEGGGSCTTSSCCCCSSCSEEEEEEECCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCCCcceEEEEeCCchHHHhHHHhhCCCCccEEEEEEEeccCCCcccchHHHHHHHHHHHHH
Confidence 99999998654311 111122222 221 3566777776777776654322112 12233334444566
Q ss_pred HHHHHcC----CceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcc
Q psy4699 349 DEIIACG----GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEE 403 (500)
Q Consensus 349 ~~~~~~g----G~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~ 403 (500)
+.+...| +++++.|+ +.+| ..++|+ .++.|+++|+.|||++|||||+.+
T Consensus 467 ~~~~~~G~~~~~yl~~~~~----~~~w-~~~~G~-~~~~m~~iK~~~DP~~iLnPG~~i 519 (524)
T 2exr_A 467 HWCVKNGIDYKLYLPHYKS----QEEW-IRHFGN-RWSRFVDRKAMFDPMAILSPGQKI 519 (524)
T ss_dssp HHHHHTTCCEEESSCCCCS----HHHH-HHHHGG-GHHHHHHHHHHHCTTCCBCGGGCS
T ss_pred HHHHHcCCccEEeecCCCC----HHHH-HHHhhh-HHHHHHHHHhhcCchhhcCCCCcc
Confidence 6666666 33566664 2234 334454 678999999999999999999854
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=99.83 E-value=1e-20 Score=201.82 Aligned_cols=316 Identities=11% Similarity=0.106 Sum_probs=182.3
Q ss_pred CCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
.+++|.++++++|..+.+||.++ || .+.+.+ ...++||..++.||+|||||||+++|||.|.|+...++
T Consensus 173 ~tvGG~v~~~g~g~~~~~yG~~~d~v~~~evV~~dG~v~~~~~~~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~ 252 (534)
T 1w1o_A 173 LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWV 252 (534)
T ss_dssp SBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEE
T ss_pred EEeceeccCCCccccccccccHhhhEEEEEEEeCCccEEEECCCCChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEE
Confidence 67899999999999999999987 44 222221 24679999999999999999999999999999998899
Q ss_pred EEEcCCHHHHHHHHHHHHHcCC-----CccEEEeechHhHhhcc--ccCCCCcchhhhhhhhhhhhhhhhcCCCCcccce
Q psy4699 139 SILFPNFEAGVKCLREIAKKRC-----QPSSIRLVDNVQLKAGQ--FFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCA 211 (500)
Q Consensus 139 ~~~f~~~~~a~~~~~~l~~~~~-----~p~a~el~d~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (500)
.+.|++++++.+++..+...+. .|+++|+||...+.... +..+..+.+. .+.... ...+... .+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~~~~ 327 (534)
T 1w1o_A 253 RFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFT--DADVAR--IVALAGE-RNATTV 327 (534)
T ss_dssp EEEESCHHHHHHHHHHHHCBC------CBCSCSEEEEEEEEGGGHHHHHHTTSSSC--HHHHHH--HHHHHHH-TTCSEE
T ss_pred EEEeCCHHHHHHHHHHHHhcccccccccccchhHhhhhhhcccccccccccccccC--cccccc--ccccccc-cccceE
Confidence 9999999999999998877766 67899999987664210 0000000000 000000 0000000 001112
Q ss_pred eeEEEe----cC-H--HHHHHHHHHHHHHHHHcCCCCCC-ccchhhhhhhh--hhHHHHhhhhcc-ccccccceeeeeec
Q psy4699 212 ATVLFE----GD-P--EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLT--YIIAYIRDFACD-YYFIGDSFETSVPW 280 (500)
Q Consensus 212 ~~l~~e----g~-~--~~v~~~~~~l~~i~~~~~~~~~~-~~~~~~~~~~r--~~~~~~~~~~~~-~~~~~~~~d~~vp~ 280 (500)
+++.+. |+ . +.++++.+.+.+.++..++.... ..... .+..+ ...|.+|..+.. ... . +.|++||+
T Consensus 328 l~ie~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~-~~~~~~~~~~w~~r~~~~~~~~~-~-~~d~~vP~ 404 (534)
T 1w1o_A 328 YSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYA-AFLDRVHGEEVALNKLGLWRVPH-P-WLNMFVPR 404 (534)
T ss_dssp EEEEEEEEC-------CHHHHHHHHHHTTCCCCTTCEEEEEEEHH-HHHTHHHHHHHHHHHTTCSSSCC-C-CEEEEEEG
T ss_pred EEEEEEEecCCCccchhhhHHHHHHHHHhhcccCCcceeccchHH-HHhhhhhhhHHHHhhccccccCC-c-cccEEecH
Confidence 333343 53 3 55666666665555444432110 00000 00000 011223332211 111 1 23999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCC-ceeee----e----eeeeeeecCCccEEEEEeccCCC-CCCchHHHHHHHHHHHHH
Q psy4699 281 DKTVLLCINVKKRLTQECTALSI-KFFET----S----CRVTQTYDAGSCIYFYFGFNARD-FENPDQTLTYLQHCARDE 350 (500)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~----~----~~~~h~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 350 (500)
++++++++.+.+. +.+.++. ...++ + .+.+|.+..| ++|+++.+.... ..++.++..+..+.+.+.
T Consensus 405 s~l~~~~~~~~~~---l~~~~~~~~~~~~~~~~gh~~~~~~s~v~~dg-n~h~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 480 (534)
T 1w1o_A 405 SRIADFDRGVFKG---ILQGTDIVGPLIVYPLNKSMWDDGMSAATPSE-DVFYAVSLLFSSVAPNDLARLQEQNRRILRF 480 (534)
T ss_dssp GGHHHHHHHHTTT---TTTTSCCCSCEEEEEEEGGGSCTTSSCCCCSS-SEEEEEEECCCC---CHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH---HhhccCCcccEEEeecccccccccccccCCCc-cEEEEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 9999998765432 2233332 11111 1 2233334445 477776654221 112333445566667776
Q ss_pred HHHcC----CceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCc
Q psy4699 351 IIACG----GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKE 402 (500)
Q Consensus 351 ~~~~g----G~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~ 402 (500)
+.+.| +++..+| .+.+| ..+++++.++.|+++|+.+||+++|||||.
T Consensus 481 ~~~~~~~~~~yl~~~~----~~~~w-~~~~G~~~~~~l~~iK~~~DP~~ilnpgk~ 531 (534)
T 1w1o_A 481 CDLAGIQYKTYLARHT----DRSDW-VRHFGAAKWNRFVEMKNKYDPKRLLSPGQD 531 (534)
T ss_dssp HHHTTCCCEESSCCCS----SHHHH-HHHHCHHHHHHHHHHHHHHCTTCCBCGGGC
T ss_pred HHHhCCCcEEECCCCC----ChHHH-HHHhCHHHHHHHHHHHHhcCchhhcCCCCc
Confidence 66653 3444444 24556 356787789999999999999999999993
No 9
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=99.75 E-value=5.6e-19 Score=185.05 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=107.0
Q ss_pred chHHHHHHHHHHHHHHHHcCCceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccCCCcccCCCcCccceee
Q psy4699 336 PDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYS 415 (500)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gG~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~~ 415 (500)
+.+.+|++++.+.......|..++.+..++..+.+ +.++.++++-+...|.-....+.| .+|||+|++
T Consensus 330 ~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~--------~~~~~~~~~~~~~~~~~~~~~~gH----~gdGnlH~~ 397 (476)
T 3pm9_A 330 QQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVP--------QFIEQANAAVVALIPGARPVPFGH----LGDGNIHYN 397 (476)
T ss_dssp HHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHH--------HHHHHHHHHHHHHSTTCEEEEEEE----GGGTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHH--------HHHHHHHHHHHHhcCCCeEEEEEE----eCCCceEEE
Confidence 45568888888877777777667777888766533 345555555555544332222233 478999987
Q ss_pred eecccCCCCCCC-hHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCCCc
Q psy4699 416 VYKLTMDHYPEG-PQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNL 494 (500)
Q Consensus 416 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~ 494 (500)
++.. ...++++ .++++++.+.+++.+. ++|||+|+|||+|..|++|+..++++..+++|++||++|||+|||||||+
T Consensus 398 i~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~gGsis~EHGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNPGki 475 (476)
T 3pm9_A 398 VSQP-VGADKAEFLARWHDVSQVVFEVVL-RLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKV 475 (476)
T ss_dssp EECC-TTCCHHHHHTTHHHHHHHHHHHHH-HTTCBSCSSSCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBSTTSC
T ss_pred EecC-CcCChHHHHHHHHHHHHHHHHHHH-HcCCEEEEcccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCc
Confidence 5421 1111111 2456788888999886 89999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy4699 495 L 495 (500)
Q Consensus 495 ~ 495 (500)
|
T Consensus 476 ~ 476 (476)
T 3pm9_A 476 V 476 (476)
T ss_dssp C
T ss_pred C
Confidence 6
No 10
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.59 E-value=6.2e-16 Score=165.64 Aligned_cols=84 Identities=25% Similarity=0.432 Sum_probs=53.5
Q ss_pred ccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCC
Q psy4699 410 SDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVF 489 (500)
Q Consensus 410 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~il 489 (500)
++++|+.+.+... .+++.++++++.+++++.+. ++|||+|+|||+|+.|++|+..++|+..+++|++||++|||+|||
T Consensus 501 G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~-~~gGsiS~EHGiG~~k~~~l~~~~g~~~~~lmr~iK~a~DP~gIl 578 (584)
T 2uuu_A 501 GVCLYFIFASKQN-ENKDMAQYIEAKKLMTDIIF-KYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDIC 578 (584)
T ss_dssp EEEEEEEEEEECC-TTCCTHHHHHHHHHHHHHHH-HTTCCCC------------------CTHHHHHHHHHHHHCTTCCB
T ss_pred CcEEEEEeccCCC-ChhhHHHHHHHHHHHHHHHH-HcCCcEEecccCCcccHHHHHHhcCHHHHHHHHHHHHHcCCCcCC
Confidence 4466654433222 45566788899999999986 899999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q psy4699 490 ASGNLL 495 (500)
Q Consensus 490 npgk~~ 495 (500)
||||+|
T Consensus 579 NPGki~ 584 (584)
T 2uuu_A 579 NPRKLI 584 (584)
T ss_dssp SCCCC-
T ss_pred CCCCCC
Confidence 999986
No 11
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.52 E-value=8.8e-15 Score=159.43 Aligned_cols=87 Identities=32% Similarity=0.540 Sum_probs=70.3
Q ss_pred cCccce-eeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCC
Q psy4699 408 QFSDLL-YSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPN 486 (500)
Q Consensus 408 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~ 486 (500)
.++|.+ |..+.+......+..+.++++...+++.+. ++||+||+|||||+.|++|+..++++..+++|++||++|||+
T Consensus 571 ~dg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~-~~GGsiS~EHGIG~~k~~~l~~~~g~~~l~lmr~IK~a~DP~ 649 (658)
T 4bby_A 571 YDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEIL-ANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPT 649 (658)
T ss_dssp CSSEEEEEEEEEEECTTCSCHHHHHHHHHHHHHHHHH-HTTCCSCSSSCCTTTSGGGHHHHHCHHHHHHHHHHHHHHSTT
T ss_pred eccCceEEEEecCCcCCchhHHHHHHHHHHHHHHHHH-HcCCeEEEcccchHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 345543 333333332233335667888888999886 899999999999999999999999999999999999999999
Q ss_pred CCCCCCCcc
Q psy4699 487 NVFASGNLL 495 (500)
Q Consensus 487 ~ilnpgk~~ 495 (500)
|||||||++
T Consensus 650 gILNPGKll 658 (658)
T 4bby_A 650 NIFGNRNLL 658 (658)
T ss_dssp CSSCSCCCC
T ss_pred cCCCCCCCC
Confidence 999999986
No 12
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=99.37 E-value=2.6e-13 Score=140.57 Aligned_cols=269 Identities=12% Similarity=0.043 Sum_probs=155.1
Q ss_pred CCCCccCccccccCccccccccee-------Ee---cCCC--CCCCCCCCccccccccCccceeeeeeEEEeeecCccee
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME---NTQH--PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQK 136 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV---g~~~--~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~ 136 (500)
..++||.+++++.|.. .+||.++ +| |.-+ .+....| ++++||+|||||||++||||.|.|+.+.
T Consensus 113 ~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~~f---~~~~g~~G~lGvit~~~l~l~p~~~~~~ 188 (422)
T 2vfr_A 113 HISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGSTVVIARGDERF---GGAVTSLGALGVVTSLTLDLEPAYEMEQ 188 (422)
T ss_dssp CSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCEEEEETTSTTG---GGTSSCTTTTCEEEEEEEECEECCEEEE
T ss_pred CeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCEEEeCCCCCCc---ceEEecCCCCEEEEEEEEEEEecCceEE
Confidence 3689999999999976 6999987 33 2211 1111123 8899999999999999999999999887
Q ss_pred EEEEEcCCHHHHH-HHHHHHHHcCCCccEEEeechHhHhhcc--cc--CCCCcchhhhhhhhhhhhhhhhcCCC-Cc-cc
Q psy4699 137 FGSILFPNFEAGV-KCLREIAKKRCQPSSIRLVDNVQLKAGQ--FF--RPDPGYLELLTDGLKKLYVTKILGFR-DD-EM 209 (500)
Q Consensus 137 ~~~~~f~~~~~a~-~~~~~l~~~~~~p~a~el~d~~~~~~~~--~~--~p~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 209 (500)
..++ |.++++++ +++.++. ..+.++|+++ ..++... -. .+. ..+ .+ .+
T Consensus 189 ~~~~-~~~~~~~~~~~~~~~~---~~~~~~e~~~-~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 243 (422)
T 2vfr_A 189 HVFT-ELPLAGLDPATFETVM---AAAYSVSLFT-DWRAPGFRQVWLKRRT--------------------DRPLDGFPY 243 (422)
T ss_dssp EEEE-EECSTTCCHHHHHHHH---TSSSEEEEEE-CSSSSSEEEEEEEEET--------------------TSCCCCCTT
T ss_pred EEEe-cCCHHHHHHHHHHHHH---hcCCcEEEEe-cCCCceeEEEEecCcC--------------------CCCCCCchH
Confidence 7765 78999999 9988875 3578999998 6665311 00 000 000 00 11
Q ss_pred ceeeEEEecCHHHHHHHHHHHHHHHHHcCCC---CCC-ccchhhhhhhhhhHHHHhhhhcccc-ccccceeeeeeccchH
Q psy4699 210 CAATVLFEGDPEDVKNNEDKIYSIAKRYGGI---PAG-ESNGRRGYMLTYIIAYIRDFACDYY-FIGDSFETSVPWDKTV 284 (500)
Q Consensus 210 ~~~~l~~eg~~~~v~~~~~~l~~i~~~~~~~---~~~-~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~d~~vp~~~~~ 284 (500)
.. .+... .+..... ... .......|..++.. ...++.+. ......|++||+++++
T Consensus 244 ~~---~~~~~--------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~e~avP~e~~~ 303 (422)
T 2vfr_A 244 AA---PAAEK--------------MHPVPGMPAVNCTEQFGVPGPWHERLPH---FRAEFTPSSGAELQSEYLMPREHAL 303 (422)
T ss_dssp SE---ECSSC--------------CCSSTTSCGGGBCCCTTCCEEGGGTSSS---BCTTCCCSCCSCEEEEEEEEGGGHH
T ss_pred HH---HHHhh--------------cccCcccChhhhcccCCccccHHHhccc---ccccccCCcccEEEEEEEEEHHHHH
Confidence 00 00000 0000000 000 00000112211100 00111111 1222449999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceeeeeeeeeeeecCCccEEE-------EEeccCCCCCCchHHHHHHHHHHHHHHHHcCCc
Q psy4699 285 LLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYF-------YFGFNARDFENPDQTLTYLQHCARDEIIACGGS 357 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~h~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 357 (500)
++++++++.+.+ .+..... +..++.|..+ ++ +|+ .+.+.. ..+.+.++++.+++.+.+.++||+
T Consensus 304 ~~l~~l~~~~~~---~~~~~~~-v~~r~~~~~~-~~-Ls~~~~r~~~~l~~~~---~~~~~~~~~~~~~~~~lv~~~gG~ 374 (422)
T 2vfr_A 304 AALHAMDAIRET---LAPVLQT-CEIRTVAADA-QW-LSPAYGRDTVAAHFTW---VEDTAAVLPVVRRLEEALVPFAAR 374 (422)
T ss_dssp HHHHHHHHTHHH---HGGGEEE-EEEEEECCBC-ST-TCTTBTSCEEEEEEEE---CSCHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHh---CCCceee-EEEEeecCCc-cc-cCCCCCCCeEEEEEec---CCCchhHHHHHHHHHHHHHHcCCc
Confidence 999987765543 2222111 1134445533 22 222 111111 223456678888888999999999
Q ss_pred ee-eeccCCcccccccccccCHHHHHHHHHHHHhcCCCCcccC
Q psy4699 358 LS-HHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFAD 399 (500)
Q Consensus 358 ~s-~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~llnp 399 (500)
++ +..+ ....+.+...|+ .++.++++|+.+||+++||.
T Consensus 375 ~~wgk~~--~~~~~~~~~~Yp--~~~~f~~vk~~~DP~g~f~n 413 (422)
T 2vfr_A 375 PHWGKVF--TVPAGELRALYP--RLADFGALAGALDPAGKFTN 413 (422)
T ss_dssp ECTTSCC--CCCHHHHHTTCT--THHHHHHHHHHHCTTCTTCC
T ss_pred ccccccC--CCCHHHHHHHCc--CHHHHHHHHHHhCCCCccCC
Confidence 75 5533 344566666776 48999999999999999884
No 13
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=99.13 E-value=2.6e-11 Score=129.71 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCCcccCCCcccCCCcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCc
Q psy4699 380 GLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKI 459 (500)
Q Consensus 380 ~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~ 459 (500)
.-+.++.+++.+.-.++- ...+ .+.+++|+|+++..+ +++.++++.+++.+.+.+++.. ..|||+|..
T Consensus 436 l~~~~~~~~~~~~~~g~~--~~~~-gH~gdGnlH~~i~~~---~~~~~~~~~~~~~~~~~~l~~~------~~eHGiG~~ 503 (560)
T 1e8g_A 436 AMMQYAVTKKRCQEAGLD--FIGT-FTVGMREMHHIVCIV---FNKKDLIQKRKVQWLMRTLIDD------CAANGWGEY 503 (560)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCEE-EEECSSCEEEEEEEE---EETTCHHHHHHHHHHHHHHHHH------HHHTTCCBS
T ss_pred HHHHHHHHHHHHHHcCCc--eEEE-EEecCCeEEEEeccc---CCCCCHHHHHHHHHHHHHHHHH------HHHcCCccc
Confidence 334555555554433431 1111 234789999876211 2345566666776666666642 259999999
Q ss_pred ccc--cc---cccC---CHHHHHHHHHHhhhcCCCCCCCCCCccC
Q psy4699 460 RSH--WY---PEHV---SQVGLELYRSTKQALDPNNVFASGNLLL 496 (500)
Q Consensus 460 k~~--~~---~~~~---~~~~~~~~~~iK~~~DP~~ilnpgk~~~ 496 (500)
|++ |+ ..++ |+..+++|++||++|||+|||||||++.
T Consensus 504 k~~~~~l~~~~~~~~~~g~~~~~lm~~iK~~~DP~gILNPGk~~~ 548 (560)
T 1e8g_A 504 RTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGV 548 (560)
T ss_dssp CCCGGGHHHHHHHTCHHHHHHHHHHHHHHHHHCTTCCBCTTGGGC
T ss_pred ccchhHHHHHHHHhccCCHHHHHHHHHHHHHcCccCCCCCCcccc
Confidence 998 99 8888 8899999999999999999999999985
No 14
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=99.08 E-value=9.4e-11 Score=124.46 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCcccCCCcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCC
Q psy4699 379 VGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGK 458 (500)
Q Consensus 379 ~~~~~~~~~K~~~dP~~llnpgk~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~ 458 (500)
...+.++.+++.++-.++-. ..-.+.+++|+|+++... +++.++++.+++.+.+.+++.. +.+||+|.
T Consensus 404 ~l~~~~~~~~~~~~~~~~~~---~~~gh~gdGnlH~~i~~~---~~~~~~~~~~~~~~~~~~~~~~------~~ehG~G~ 471 (520)
T 1wvf_A 404 ECKKQAAMAKRVLHKYGLDY---VAEFIVAPRDMHHVIDVL---YDRTNPEETKRADACFNELLDE------FEKEGYAV 471 (520)
T ss_dssp HHHHHHHHHHHHHHHTTCCC---CEEEEECSSEEEEEEEEE---EETTCHHHHHHHHHHHHHHHHH------HHHTTCCB
T ss_pred HHHHHHHHHHHHHHHcCCCe---eEeecccCcceeeeeccc---cCCCCHHHHHHHHHHHHHHHHH------HHHcCCCc
Confidence 34455556665555444321 111234689999764211 2334555556666667666642 36899999
Q ss_pred ccc--ccc---cccCCHHHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 459 IRS--HWY---PEHVSQVGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 459 ~k~--~~~---~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
.|. .|+ ..++|+..+++|++||++|||+|||||||++.+
T Consensus 472 ~k~~~~~~~~~~~~~g~~~~~lmr~IK~a~DP~~IlNPGki~~~ 515 (520)
T 1wvf_A 472 YRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGID 515 (520)
T ss_dssp SCCCGGGHHHHHHHTCHHHHHHHHHHHHHHCTTCCBCTTGGGCC
T ss_pred cccChhHhhhhhhhcCHHHHHHHHHHHHHcCCCCCCCCCcCCCC
Confidence 984 588 889999999999999999999999999999843
No 15
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.01 E-value=1.6e-10 Score=123.01 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=56.6
Q ss_pred CcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhcCCceeeccccCCcccccccccCCHHHHHHHHHHhhhcCCC
Q psy4699 407 KQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPN 486 (500)
Q Consensus 407 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~ 486 (500)
-+++|+|++++.. .+.+ ++++.+.+++++. ++||++|+|||+|.. |. .+.. |++||++|||+
T Consensus 490 ~g~g~~H~~~~~~------~~~~-~~~i~~~~~~~v~-~~GGsisaEHGvG~~---~~----~~~~---m~~iK~~~DP~ 551 (571)
T 1f0x_A 490 FMCYVFHQDYIVK------KGVD-VHALKEQMLELLQ-QRGAQYPAEHNVGHL---YK----APET---LQKFYRENDPT 551 (571)
T ss_dssp TTTTEEEEEEEEE------TTCC-HHHHHHHHHHHHH-HTTCBSCSSSCCTTT---SC----CCHH---HHHHHHHHCTT
T ss_pred EcCCceEEeeecC------Cchh-HHHHHHHHHHHHH-HcCCeEEeeccCCcc---cC----CHHH---HHHHHHHhCCC
Confidence 3688999765321 1111 5568888999886 899999999999996 32 1222 99999999999
Q ss_pred CCCCCCCccCCC
Q psy4699 487 NVFASGNLLLPS 498 (500)
Q Consensus 487 ~ilnpgk~~~~~ 498 (500)
|||||||++.++
T Consensus 552 ~ilNPGk~~t~~ 563 (571)
T 1f0x_A 552 NSMNPGIGKTSK 563 (571)
T ss_dssp CCBSTTTTTCCC
T ss_pred CCCCCCcCcCCc
Confidence 999999999765
No 16
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=98.62 E-value=9.2e-09 Score=96.14 Aligned_cols=72 Identities=17% Similarity=0.041 Sum_probs=60.6
Q ss_pred CCccCccccccCccccccccee------Ee---------cCCCCCCCCCCCccccccccCccceeeeeeEEEeeecCcce
Q psy4699 71 PVAEGEAEDASRMEEGLRGHLE------ME---------NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQ 135 (500)
Q Consensus 71 ~~~g~~a~~~sg~~~~~yG~~~------vV---------g~~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~ 135 (500)
+++|.++++++| .+||... || +....|++.||||.++++||+|||||||+++||+.|.|+..
T Consensus 42 tVGG~v~~nagG---~~yG~~D~V~~vevV~~dG~i~~~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~ 118 (219)
T 2yvs_A 42 GVGGLVARGGFA---QTFFFPAEVLGLTFRTPKGRRVRAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQA 118 (219)
T ss_dssp HHHHHHHTTCSS---BSSCGGGGEEEEEEECTTSCEEEEECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEE
T ss_pred chhheeccCccc---ccCCCccEEEEEEEEeCCCCEEEECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCccc
Confidence 889999988888 7888754 44 33445788999999999999999999999999999999988
Q ss_pred eEEEEEcCCH
Q psy4699 136 KFGSILFPNF 145 (500)
Q Consensus 136 ~~~~~~f~~~ 145 (500)
..+++.+.++
T Consensus 119 ~~~~~~~~~~ 128 (219)
T 2yvs_A 119 FLRRPFSGSF 128 (219)
T ss_dssp EEEEECCSSC
T ss_pred EEEEEecCCH
Confidence 8887777654
No 17
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=98.58 E-value=2.8e-08 Score=100.77 Aligned_cols=82 Identities=55% Similarity=0.761 Sum_probs=45.3
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCcccccCCCC-CCCCCCCCccC
Q psy4699 5 KFVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATGDD-VKAGDIPVAEG 75 (500)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~~~~~~~~-~~~~e~~~~g~ 75 (500)
-|+.|+++.++|++++.+++++++|||+|+| |..|++||++||++|||+++++..++++. .+.++.++.+.
T Consensus 352 li~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~~~~~~~~~~~~~~~ 431 (448)
T 3q6m_A 352 IIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEG 431 (448)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCC
Confidence 3788889998998899999999999999999 99999999999999999997654332211 12233333332
Q ss_pred ccccccCccccc
Q psy4699 76 EAEDASRMEEGL 87 (500)
Q Consensus 76 ~a~~~sg~~~~~ 87 (500)
. .++|.|+.+-
T Consensus 432 ~-~~~~~~~~~~ 442 (448)
T 3q6m_A 432 D-DDTSRMEEVD 442 (448)
T ss_dssp ------------
T ss_pred C-cchhhhhhhc
Confidence 2 5677777653
No 18
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=98.16 E-value=9.2e-07 Score=90.08 Aligned_cols=53 Identities=57% Similarity=0.799 Sum_probs=44.0
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHccCCCCCcc
Q psy4699 5 KFVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDED 57 (500)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~~l~~~~~~ 57 (500)
-|+.|++++++|++++.+++++++|||+|+| |+.|++||++||.++||+++++
T Consensus 368 li~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l~~~~~~ 428 (444)
T 3hjc_A 368 IIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEE 428 (444)
T ss_dssp HHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCccc
Confidence 3678888888888899999999999999999 9999999999999999998753
No 19
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=98.14 E-value=3.4e-06 Score=89.64 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=53.9
Q ss_pred CcCccceeeeecccCCCCCCChHHHHHHHHHHHHHHHhhc----CCceeeccccCCcccccccccCCHHHHHHHHHHhhh
Q psy4699 407 KQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAV----SGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQA 482 (500)
Q Consensus 407 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gGsis~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~ 482 (500)
..++|+||+++.......+++.++..+....+.+.+. +. ++.++.+|. +.+|. ..||+..++.|++||+.
T Consensus 446 ~~dgn~h~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~yl~~~~~----~~~w~-~~~G~~~~~~l~~iK~~ 519 (534)
T 1w1o_A 446 TPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCD-LAGIQYKTYLARHTD----RSDWV-RHFGAAKWNRFVEMKNK 519 (534)
T ss_dssp CCSSSEEEEEEECCCC---CHHHHHHHHHHHHHHHHH-HTTCCCEESSCCCSS----HHHHH-HHHCHHHHHHHHHHHHH
T ss_pred CCCccEEEEEEEecCCCCcchHHHHHHHHHHHHHHHH-HhCCCcEEECCCCCC----hHHHH-HHhCHHHHHHHHHHHHh
Confidence 4688999876432110022223344555566666554 33 344455552 56664 46898789999999999
Q ss_pred cCCCCCCCCCC-cc
Q psy4699 483 LDPNNVFASGN-LL 495 (500)
Q Consensus 483 ~DP~~ilnpgk-~~ 495 (500)
|||+||||||| +|
T Consensus 520 ~DP~~ilnpgk~I~ 533 (534)
T 1w1o_A 520 YDPKRLLSPGQDIF 533 (534)
T ss_dssp HCTTCCBCGGGCSC
T ss_pred cCchhhcCCCCcCC
Confidence 99999999999 55
No 20
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=98.05 E-value=3.6e-08 Score=98.07 Aligned_cols=142 Identities=9% Similarity=0.050 Sum_probs=83.7
Q ss_pred CCCccCccccccCccccccc-cee-------Ee---cC----CCCCCCCCCCccccccccCccceeeeeeEEEeeec-Cc
Q psy4699 70 IPVAEGEAEDASRMEEGLRG-HLE-------ME---NT----QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PR 133 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG-~~~-------vV---g~----~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~ 133 (500)
.++||++++|+++ || .++ +| |. ...+...||+...|+ ||| ||||+++|||.|. |+
T Consensus 142 gtvGG~i~~nagg-----yG~~~~d~v~~v~vv~~~G~i~~~~~~~~~~gyr~~~l~--s~g--gIIt~~~l~l~p~~p~ 212 (326)
T 1hsk_A 142 GSIGGAVYMNAGA-----YGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSIIQ--KEH--LVVLEAAFTLAPGKMT 212 (326)
T ss_dssp SBHHHHHHHTCEE-----TTEEHHHHEEEEEEECTTSCEEEEETTTTTCBTTBCHHH--HTT--CEEEEEEEECEECCHH
T ss_pred chhhHHHhccccc-----CchhhhhhEEEEEEEeCCCCEEEEChHHcCCCccccccC--CCC--EEEEEEEEEEEcCCHH
Confidence 4678888877766 99 665 44 22 112567889888776 788 9999999999999 76
Q ss_pred ceeEEEEEcCCHHHHHHHHH-----HHHHcCCCccEEEeechHhHhhccccCCCCcchhhhhhhhhhhhhhhhcCCCCcc
Q psy4699 134 CQKFGSILFPNFEAGVKCLR-----EIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDE 208 (500)
Q Consensus 134 ~~~~~~~~f~~~~~a~~~~~-----~l~~~~~~p~a~el~d~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (500)
.....+..|+++.++.+.+. .+.+.+..+++.+++|...++..+... .+.+ +.
T Consensus 213 ~~~~~~~~~~~~~~a~~p~~~~s~gs~fk~p~~~~a~elid~~glkg~~~g~---------------------a~v~-~~ 270 (326)
T 1hsk_A 213 EIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGG---------------------VEVS-TK 270 (326)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCEECCCBCCCTTSCHHHHHHHTTCTTCEETT---------------------EEEC-SS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEeeeCCCcchHHHHHHHhccCCEEeCC---------------------eeec-cc
Confidence 55544444444444333211 112223334455555554433221000 0011 11
Q ss_pred cceeeEEEec-CHHHHHHHHHHHHHHHHHcCCCCC
Q psy4699 209 MCAATVLFEG-DPEDVKNNEDKIYSIAKRYGGIPA 242 (500)
Q Consensus 209 ~~~~~l~~eg-~~~~v~~~~~~l~~i~~~~~~~~~ 242 (500)
.+.+++.+.| +.+.+.+.++.+.+.+++.++..+
T Consensus 271 ~a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~l 305 (326)
T 1hsk_A 271 HAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIEL 305 (326)
T ss_dssp CTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCee
Confidence 2345666777 677888888999888887777653
No 21
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=97.98 E-value=1.7e-06 Score=90.78 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=67.4
Q ss_pred CCCccCccccccCccccccccee-------Ee---cCCCCCCCCCCCccccccc-cCccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---NTQHPNEDQAFSEHAQSTV-EQGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g~~~~k~~~G~dl~~LfiG-SEGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
.+++|....++.|+.+.+||.+. || |.-+.+...++||...+.| ++|+|||||+++|||.|.|+....+
T Consensus 144 vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG~i~~~~~~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~ 223 (495)
T 3fw9_A 144 VGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 223 (495)
T ss_dssp CBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEE
T ss_pred CeEeeeccCCCCcccccCCCchhheEEEEEEEcCCCCEEEcCCCChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEE
Confidence 45677778888999999999886 44 4333334689999999998 9999999999999999999988777
Q ss_pred EEEcC-CHHHHHHHHHHH
Q psy4699 139 SILFP-NFEAGVKCLREI 155 (500)
Q Consensus 139 ~~~f~-~~~~a~~~~~~l 155 (500)
.+.|+ +.+++.+++...
T Consensus 224 ~~~~~~~~~~a~~~l~~~ 241 (495)
T 3fw9_A 224 RVTKNVAIDEATSLLHKW 241 (495)
T ss_dssp EEEEEECHHHHHHHHHHH
T ss_pred EEeecCcHHHHHHHHHHH
Confidence 77764 346666666554
No 22
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=97.92 E-value=3.3e-06 Score=89.34 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=33.3
Q ss_pred ccccCCcccccccccCCHH--------HHHHHHHHhhhcCCCCCCCCCCccCCC
Q psy4699 453 HHGVGKIRSHWYPEHVSQV--------GLELYRSTKQALDPNNVFASGNLLLPS 498 (500)
Q Consensus 453 ehGiG~~k~~~~~~~~~~~--------~~~~~~~iK~~~DP~~ilnpgk~~~~~ 498 (500)
|||.|..++.|+....++. .+++|++||+.|||+|||||||+|-+.
T Consensus 469 ~~~~G~~~~~yl~~~~~~~~w~~~~G~~~~~m~~iK~~~DP~~iLnPG~~if~~ 522 (524)
T 2exr_A 469 CVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNR 522 (524)
T ss_dssp HHHTTCCEEESSCCCCSHHHHHHHHGGGHHHHHHHHHHHCTTCCBCGGGCSSCC
T ss_pred HHHcCCccEEeecCCCCHHHHHHHhhhHHHHHHHHHhhcCchhhcCCCCccCCC
Confidence 4566655555555544442 578999999999999999999855343
No 23
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=97.81 E-value=6.7e-06 Score=85.93 Aligned_cols=87 Identities=9% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCCCccCccccccCccccccccee-------Ee--cCCCC---CCCCCCCccccccccCccceeeeeeEEEeeecCccee
Q psy4699 69 DIPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHP---NEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQK 136 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~---k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~ 136 (500)
..+++|.+++++.|..+.+||.+. +| .+.+. +...++||...+.||.|++||||+++|+|.|.|+...
T Consensus 140 ~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~ 219 (481)
T 4feh_A 140 QVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYF 219 (481)
T ss_dssp CCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSSSTTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEE
T ss_pred ccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCCCCChHHHHHhhccCCCceEEEEEEEEEEeCCccEE
Confidence 358999999999999999999986 34 22222 1126789999999999999999999999999986544
Q ss_pred -EEEEEcCCHHHHHHHHHHH
Q psy4699 137 -FGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 137 -~~~~~f~~~~~a~~~~~~l 155 (500)
...+.+.+++++++.+.++
T Consensus 220 ~~~~~~~~~l~~~~~~~~~~ 239 (481)
T 4feh_A 220 IADGDVTASLDETIALHSDG 239 (481)
T ss_dssp EEEEEECSSHHHHHHHHSSS
T ss_pred EEEEEeCCCHHHHHHHHHHH
Confidence 4567899999999988754
No 24
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=97.75 E-value=1.2e-05 Score=83.70 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=64.1
Q ss_pred CCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
..++|....++.|+.+.+||.+. || .+.+.+ ...++||...+.||+|++||||+++|||.|.|+.....
T Consensus 133 ~gi~G~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~ 212 (459)
T 2bvf_A 133 VGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAG 212 (459)
T ss_dssp SBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEESSSSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEE
T ss_pred cccceeecCCCCccccccccCHhHhEEEEEEEcCCCeEEEeCCCCChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEE
Confidence 45566677788899999999876 44 222221 23568988888999999999999999999998776666
Q ss_pred EEEcCC--HH--HHHHHHHHHH
Q psy4699 139 SILFPN--FE--AGVKCLREIA 156 (500)
Q Consensus 139 ~~~f~~--~~--~a~~~~~~l~ 156 (500)
.+.|+. .+ +++++++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~ 234 (459)
T 2bvf_A 213 FITWAPSVSELAGLLTSLLDAL 234 (459)
T ss_dssp EEEECCCHHHHHHHHHHHHHHH
T ss_pred EEEechHHhhHHHHHHHHHHHH
Confidence 666765 44 5566666654
No 25
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=97.66 E-value=1.3e-05 Score=84.40 Aligned_cols=87 Identities=10% Similarity=-0.025 Sum_probs=64.2
Q ss_pred CCCccCccccccCccccccccee-------Ee---cCCCCCCCCCCCcccccccc-CccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---NTQHPNEDQAFSEHAQSTVE-QGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g~~~~k~~~G~dl~~LfiGS-EGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
..++|....++.|+.+.+||.+. || |.-+.....++||...+.|| +|+|||||+++|||.|.|+....+
T Consensus 152 vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~ 231 (518)
T 3vte_A 152 VGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIF 231 (518)
T ss_dssp CBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEE
T ss_pred eeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEE
Confidence 44566677788899999999876 44 33222234688999999998 999999999999999999876665
Q ss_pred EEEcC-CHHHHHHHHHHHH
Q psy4699 139 SILFP-NFEAGVKCLREIA 156 (500)
Q Consensus 139 ~~~f~-~~~~a~~~~~~l~ 156 (500)
.+.+. +.+++.+++....
T Consensus 232 ~~~~~~~~~~~~~~l~~~~ 250 (518)
T 3vte_A 232 SVKKNMEIHGLVKLFNKWQ 250 (518)
T ss_dssp EEEECCCHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHH
Confidence 55553 4466666666543
No 26
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=97.59 E-value=1e-05 Score=85.20 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=61.1
Q ss_pred CCccCccccccCccccccccee-------Ee---cCCCCCCCCCCCc-cccccccCccceeeeeeEEEeeecCcceeEEE
Q psy4699 71 PVAEGEAEDASRMEEGLRGHLE-------ME---NTQHPNEDQAFSE-HAQSTVEQGTLGVITKVVLKIRPQPRCQKFGS 139 (500)
Q Consensus 71 ~~~g~~a~~~sg~~~~~yG~~~-------vV---g~~~~k~~~G~dl-~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~ 139 (500)
.++|....++.|..+.+||.+. || |.-+..+..+.|| -.+..|++|||||||++|||+.|.|+....+.
T Consensus 154 gvgG~~~~gg~g~~~~~~G~~~d~v~~~~vV~a~G~i~~~~~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~~ 233 (500)
T 3tsh_A 154 GVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFK 233 (500)
T ss_dssp BHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTSCEECHHHHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEEE
T ss_pred eecCccccccCCccccccCChhhheeeEEEECCCceEEECCCCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEEE
Confidence 3455667778899999999875 55 4322223344554 55666999999999999999999999877777
Q ss_pred EEcCCHHHHHHHHHHH
Q psy4699 140 ILFPNFEAGVKCLREI 155 (500)
Q Consensus 140 ~~f~~~~~a~~~~~~l 155 (500)
+.+...+.+.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (500)
T 3tsh_A 234 ISKTVSEGAVDIINKW 249 (500)
T ss_dssp EEEETTTTHHHHHHHH
T ss_pred EecCcHHHHHHHHHHH
Confidence 7766666666666554
No 27
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=97.59 E-value=2.2e-05 Score=81.92 Aligned_cols=85 Identities=8% Similarity=0.050 Sum_probs=62.5
Q ss_pred CCCccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeEE
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFG 138 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~ 138 (500)
.+++|.+..++.|..+.+||.+. || .+++.+ ...++||...+.||+|++||||+++|||.|.|+....+
T Consensus 135 vgvgG~~~ggg~G~~~~~~G~~~D~v~~~~vV~a~G~v~~~~~~~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~ 214 (473)
T 3rja_A 135 VGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRF 214 (473)
T ss_dssp CBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEETTBSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEE
T ss_pred cEeeeeccCCCCCcccccccchHhheeeEEEEecCCeEEEeCCCCCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEE
Confidence 45677777888999999999886 44 222322 24688999999999999999999999999999876666
Q ss_pred EEEcCC--HHHHHHHHHH
Q psy4699 139 SILFPN--FEAGVKCLRE 154 (500)
Q Consensus 139 ~~~f~~--~~~a~~~~~~ 154 (500)
.+.|+. .+++.+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~ 232 (473)
T 3rja_A 215 GVTLNWKNKTSALKGIEA 232 (473)
T ss_dssp EEECCCCSHHHHHHHHHH
T ss_pred EEEecCccHHHHHHHHHH
Confidence 655542 3344444443
No 28
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=97.58 E-value=1.6e-05 Score=83.72 Aligned_cols=82 Identities=10% Similarity=0.021 Sum_probs=58.0
Q ss_pred CccCccccccCccccccccee-------Ee--cCCCCC--CCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEE
Q psy4699 72 VAEGEAEDASRMEEGLRGHLE-------ME--NTQHPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSI 140 (500)
Q Consensus 72 ~~g~~a~~~sg~~~~~yG~~~-------vV--g~~~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~ 140 (500)
++|....++.|+.+.+||.+. || .+.+.+ ...++||...+.||+|++||||+++||+.|.|+....+.+
T Consensus 141 vgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~i~~~~~~~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~ 220 (503)
T 1zr6_A 141 VGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQV 220 (503)
T ss_dssp HHHHHHHCCCSTTHHHHCCGGGGEEEEEEECTTSCEEEEBTTBSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEE
T ss_pred hhhhhcCCCCCcccccccChhheEEEEEEEecCCCEEEeCCCCCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEE
Confidence 444455567789999999876 44 222222 2357999999999999999999999999999987666665
Q ss_pred EcC-CHHHHHHHHH
Q psy4699 141 LFP-NFEAGVKCLR 153 (500)
Q Consensus 141 ~f~-~~~~a~~~~~ 153 (500)
.|+ +.+++.+++.
T Consensus 221 ~~~~~~~~~~~~~~ 234 (503)
T 1zr6_A 221 TTTWNRKQHVAGLK 234 (503)
T ss_dssp EECCCHHHHHHHHH
T ss_pred EEeCCHHHHHHHHH
Confidence 553 2333334443
No 29
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=97.56 E-value=4.4e-05 Score=64.27 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhccc--------chHHHHHHHHHHHc
Q psy4699 6 FVTEYTKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKL 49 (500)
Q Consensus 6 ~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l--------~~~fa~ri~~m~~~ 49 (500)
|+.|+++ ++++.+++++++|||+|+| |+.|++||++||.+
T Consensus 79 Ik~L~~~----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~~ 126 (126)
T 1sf8_A 79 VKRAADT----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS 126 (126)
T ss_dssp HHHHHHC----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHHHh----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHhC
Confidence 5566542 3567799999999999999 99999999999863
No 30
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=96.66 E-value=0.00042 Score=73.78 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=57.6
Q ss_pred CCCCccCccccccCcc----------ccccccee-------Ee---cCC--CCC-CCCCCCccccccccCccceeeeeeE
Q psy4699 69 DIPVAEGEAEDASRME----------EGLRGHLE-------ME---NTQ--HPN-EDQAFSEHAQSTVEQGTLGVITKVV 125 (500)
Q Consensus 69 e~~~~g~~a~~~sg~~----------~~~yG~~~-------vV---g~~--~~k-~~~G~dl~~LfiGSEGTLGIITe~t 125 (500)
..++||.+++++.|.. +.+||.+. +| |.. +.. +...+||..+++|. |+ ||||++|
T Consensus 138 ~~TvGG~i~~~~~G~~l~~gG~~~~s~~~~G~~~d~V~~~evV~~dG~~~~~~~~~~~~~dl~~a~~g~-G~-giIt~~t 215 (561)
T 2i0k_A 138 VLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNL-GR-CFLTSVT 215 (561)
T ss_dssp TCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECSSSEEEEEEETTSGGGHHHHSCT-TS-SCEEEEE
T ss_pred CcccCCCcccCCcccccccCCcccccccccccHhheEEEEEEEeCCCCEEEeeeccCCCccHHHHHhcC-CC-EEEEEEE
Confidence 3688999999988887 78899987 44 431 111 11246888888855 66 8999999
Q ss_pred EEeeecCcceeEEEEEcCCHHHHHHH
Q psy4699 126 LKIRPQPRCQKFGSILFPNFEAGVKC 151 (500)
Q Consensus 126 lkl~p~P~~~~~~~~~f~~~~~a~~~ 151 (500)
|||.|.|+.+....+.++ ++++++.
T Consensus 216 l~l~p~~~~~~~~~~~~~-~~~~l~~ 240 (561)
T 2i0k_A 216 MQAGPNFRQRCQSYTDIP-WRELFAP 240 (561)
T ss_dssp EECEECCEEEEEEECCSC-HHHHTCC
T ss_pred EEEEECCceEEEEEEccC-HHHHHHH
Confidence 999999988777766565 5555544
No 31
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=96.65 E-value=0.0011 Score=69.93 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCCccCccccccCccccccccee-------Ee---c-CCC-----CC--CCCCCCcccccc-ccCccceeeeeeEEEe--
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME---N-TQH-----PN--EDQAFSEHAQST-VEQGTLGVITKVVLKI-- 128 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV---g-~~~-----~k--~~~G~dl~~Lfi-GSEGTLGIITe~tlkl-- 128 (500)
.+++|.+..++.|+.+.+||.+. || + +.+ .+ ++.++||-..+. |++|+|||||+++||+
T Consensus 154 vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~v~~~~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~ 233 (523)
T 2wdx_A 154 VGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPE 233 (523)
T ss_dssp CBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEEEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSS
T ss_pred CeeCccccCCCCCcccccccChhheEEEEEEEEecCCccEEEEecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeec
Confidence 45677777888999999999875 44 1 322 11 344566877777 5789999999999999
Q ss_pred ---------eecCcc-eeEEEEEcC
Q psy4699 129 ---------RPQPRC-QKFGSILFP 143 (500)
Q Consensus 129 ---------~p~P~~-~~~~~~~f~ 143 (500)
.|.|+. .....+.|+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 234 DVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp CCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred ccCCCcccccCCCcccEEEEEEEec
Confidence 999864 455556664
No 32
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=96.53 E-value=0.0016 Score=68.74 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=49.5
Q ss_pred CCCccCccccccCccccccccee-------Ee--c--CCC-----CC--CCCCCCccccccc-cCccceeeeeeEEEe--
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------ME--N--TQH-----PN--EDQAFSEHAQSTV-EQGTLGVITKVVLKI-- 128 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vV--g--~~~-----~k--~~~G~dl~~LfiG-SEGTLGIITe~tlkl-- 128 (500)
..++|....++.|+.+.+||.+. || . +.+ .+ ++.++||...+.| ++|+|||||+++||+
T Consensus 152 vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~ 231 (521)
T 2ipi_A 152 VGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPG 231 (521)
T ss_dssp CBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSS
T ss_pred cccCCcccCCCCCccccccccHhhcEEEEEEEEecCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeec
Confidence 56778788889999999999876 44 1 322 11 2344568888887 689999999999999
Q ss_pred ---------eecCcc
Q psy4699 129 ---------RPQPRC 134 (500)
Q Consensus 129 ---------~p~P~~ 134 (500)
.|.|+.
T Consensus 232 ~~~~~~~~~~p~~~~ 246 (521)
T 2ipi_A 232 ATGTDPSQLLPKAPT 246 (521)
T ss_dssp CCSSCGGGSSCBCCS
T ss_pred ccCCCcccccCCCCc
Confidence 999864
No 33
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=96.18 E-value=0.0012 Score=69.19 Aligned_cols=78 Identities=9% Similarity=0.015 Sum_probs=56.3
Q ss_pred CCCccCccccccCcc----------ccccccee-------Ee---cC-----CCCCCCCCCCccccccccCccceeeeee
Q psy4699 70 IPVAEGEAEDASRME----------EGLRGHLE-------ME---NT-----QHPNEDQAFSEHAQSTVEQGTLGVITKV 124 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~----------~~~yG~~~-------vV---g~-----~~~k~~~G~dl~~LfiGSEGTLGIITe~ 124 (500)
.+++|.+++++.|.. +.+||.+. +| |. -..-+..++||..+++|+ |+ ||||++
T Consensus 133 ~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~adG~~~~~~i~~~s~~~~DL~a~r~G~-G~-gIVTev 210 (540)
T 3js8_A 133 LTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVVYDKASGAYALRKFARNDPQIAPLLAHV-GR-SLIVEA 210 (540)
T ss_dssp SBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEEEETTTTEEEEEEEETTSGGGHHHHTCT-TS-SCEEEE
T ss_pred eEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEcCCCCCceeeEEEeCCCChhHHHHHhcC-CC-eEEEEE
Confidence 688999998888876 57999987 44 43 111123689998888888 88 599999
Q ss_pred EEEeeecCcceeEEEEEcCCHHHHHH
Q psy4699 125 VLKIRPQPRCQKFGSILFPNFEAGVK 150 (500)
Q Consensus 125 tlkl~p~P~~~~~~~~~f~~~~~a~~ 150 (500)
|||+.|.+..+.... ..-++++.++
T Consensus 211 tlrl~P~~~l~~~~~-~~~~~~e~l~ 235 (540)
T 3js8_A 211 TLQAAPNQRLRCQSW-FNIPYGEMFA 235 (540)
T ss_dssp EEEEEECCEEEEEEE-CCSCHHHHTC
T ss_pred EEEEEECCceEEEEE-ecCCHHHHHh
Confidence 999999987654422 1246777664
No 34
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=96.05 E-value=0.0028 Score=66.93 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCccCccccccCccccccccee-------Eec----CCC--C-CCC--CCCC--cccccccc-CccceeeeeeEEEe--
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------MEN----TQH--P-NED--QAFS--EHAQSTVE-QGTLGVITKVVLKI-- 128 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vVg----~~~--~-k~~--~G~d--l~~LfiGS-EGTLGIITe~tlkl-- 128 (500)
..++|....++.|+.+.+||.+. ||. +.+ + .+. .++| |...+.|+ +|+|||||+++||+
T Consensus 155 vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~i~~v~~~~~~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l~~ 234 (530)
T 2y3s_A 155 VGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAE 234 (530)
T ss_dssp CBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEEEEEESCTTCTTHHHHHHTTTSCTTSSCEEEEEEECCCC
T ss_pred CCcCCCcCCCCCCcccccccchhhheeeEEEEEecCCCcEEEEeccccccCCChHHHHHHhcCCCCCcEEEEEEEEEeec
Confidence 34566777788899999999876 441 322 1 122 4565 99999986 89999999999999
Q ss_pred ----------eecCcc-eeEEEEEc
Q psy4699 129 ----------RPQPRC-QKFGSILF 142 (500)
Q Consensus 129 ----------~p~P~~-~~~~~~~f 142 (500)
.|.|+. .....+.|
T Consensus 235 ~~~~~~~~~~~p~~~~~~~~~~~~~ 259 (530)
T 2y3s_A 235 ADVPPEPGRLLPRPPAEVLLNTTVW 259 (530)
T ss_dssp SSCCSCGGGSSCCCCSEEEEEEEEE
T ss_pred ccCccccccccCCCCceEEEEEEEe
Confidence 998763 33444444
No 35
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=96.03 E-value=0.0013 Score=68.92 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=53.7
Q ss_pred CCCccCccccccCccccccccee-------Eec----CC---CC----CCCCCCCcccccccc-CccceeeeeeEEEe--
Q psy4699 70 IPVAEGEAEDASRMEEGLRGHLE-------MEN----TQ---HP----NEDQAFSEHAQSTVE-QGTLGVITKVVLKI-- 128 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~~~-------vVg----~~---~~----k~~~G~dl~~LfiGS-EGTLGIITe~tlkl-- 128 (500)
..++|....++.|+.+.+||.+. ||. ++ +. ....++||...+.|+ +|+|||||+++||+
T Consensus 131 vgvgG~~~gGg~G~~~~~~G~~~D~v~~~evV~~da~G~~~~v~~~~~~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~~~ 210 (501)
T 3pop_A 131 VGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGELFWAHTGGGGGNFGVVTAYEFRSPE 210 (501)
T ss_dssp CBHHHHHHHCCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEEEEEETTCCHHHHHHHHHTTTSCTTSSCEEEEEEECCCT
T ss_pred ceEeeccccCCCcccccccccHHHhEEEEEEEEecCCCCEEEEEeccCCCCCCccHHHHhhccCCCCcEEEEEEEEEecc
Confidence 34677777788899999999876 331 33 22 135679999999999 99999999999999
Q ss_pred --------eecCc-ceeEEEEEcC
Q psy4699 129 --------RPQPR-CQKFGSILFP 143 (500)
Q Consensus 129 --------~p~P~-~~~~~~~~f~ 143 (500)
.|.|+ ......+.|+
T Consensus 211 ~~~~~~~~~p~~~~~v~~~~~~~~ 234 (501)
T 3pop_A 211 HLATEPVGLPRAAGRLHVQKVVFP 234 (501)
T ss_dssp TTCBTTTTBCBCCSEEEEEEEEEE
T ss_pred ccCCChhhcCCCCceEEEEEEEEc
Confidence 77644 3344445554
No 36
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=95.20 E-value=0.0032 Score=61.93 Aligned_cols=57 Identities=5% Similarity=0.084 Sum_probs=39.8
Q ss_pred CCCccCccccccCccccccc-cee-------Ee---cC--CCCCCCCCCCccccccccCccceeeeeeEEEeeecCc
Q psy4699 70 IPVAEGEAEDASRMEEGLRG-HLE-------ME---NT--QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPR 133 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG-~~~-------vV---g~--~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~ 133 (500)
.++|+..++|+++ || .++ +| |. .+.++..+|++.++++||+| ||||+++|||.|.|+
T Consensus 148 gTVGGav~~NaGg-----yGg~~~d~v~~vevV~~~G~i~~~~~~~~~~~yR~s~~g~~~--~IIt~~tl~L~p~~~ 217 (322)
T 3tx1_A 148 GSIGGALHMNAGA-----YGGEISDVLEAATVLTQTGELKKLKRSELKAAYRFSTIAEKN--YIVLDATFSLALEEK 217 (322)
T ss_dssp SBHHHHHHHTCEE-----TTEEHHHHEEEEEEECTTSCEEEEEGGGCC--CC-CTTTGGG--CEEEEEEEECEECCH
T ss_pred chhHHHHHhCccC-----cccchHhhEEEEEEEcCCCCEEEechHHcCcchhhcccCCCC--EEEEEEEEEEEeCCH
Confidence 4677777777665 74 444 44 22 23456789999999999987 699999999999985
No 37
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=94.31 E-value=0.04 Score=54.83 Aligned_cols=83 Identities=12% Similarity=-0.087 Sum_probs=51.8
Q ss_pred CCCccCccccccCcccccccc-ee-------Ee-c-C----CCCCCCCCCCcccc-ccccCccceeeeeeEEEeeecCcc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGH-LE-------ME-N-T----QHPNEDQAFSEHAQ-STVEQGTLGVITKVVLKIRPQPRC 134 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~-~~-------vV-g-~----~~~k~~~G~dl~~L-fiGSEGTLGIITe~tlkl~p~P~~ 134 (500)
.++|+...+|++ .||. ++ +| . . .+.+...+|++.+. |.++||++||||+++|||.|.|..
T Consensus 126 GtVGGav~~NaG-----aYG~e~~d~v~~vevv~~~~G~i~~~~~~dl~f~YR~s~~~~~~g~~gIIt~v~f~L~p~~~~ 200 (357)
T 3i99_A 126 GCAGSAPIQNIG-----AYGVEFKDVCDYVEYLCLETGTVKRLTMEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQP 200 (357)
T ss_dssp SBGGGTTTTTCE-----ETTEEGGGTEEEEEEEETTTTEEEEEETGGGCCBTTBCGGGTTTTTTEEEEEEEEEEESSCCC
T ss_pred chhHHHHHhchh-----hhhhhHHhhEeEEEEEECCCCcEEEEeHHHcCcccccccCCCccCCCEEEEEEEEEEEeCCcc
Confidence 578888877754 6996 55 33 1 1 12334455665554 667789999999999999998642
Q ss_pred eeE------EEEEcCCHHHHHHHHHHHHHc
Q psy4699 135 QKF------GSILFPNFEAGVKCLREIAKK 158 (500)
Q Consensus 135 ~~~------~~~~f~~~~~a~~~~~~l~~~ 158 (500)
... .+ ..++.++..+.+.+++++
T Consensus 201 ~~~y~~l~~~l-~~~~~~~~~~~v~~~R~~ 229 (357)
T 3i99_A 201 IIQYGPLKDLS-SDCAIHDVYQRVCATRME 229 (357)
T ss_dssp CCCSGGGGGSC-TTCCHHHHHHHHHHHHHH
T ss_pred ccchHHHHhhh-ccCCHHHHHHHHHHHHhc
Confidence 110 00 234556666666666543
No 38
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=94.14 E-value=0.043 Score=56.07 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCcee-eccccCCcccccccccCCHHHHHHHHHHhhhcCCCCCCCCC
Q psy4699 426 EGPQSCRHIFKTLKAVVDSAVSGSLS-HHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASG 492 (500)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~gGsis-~ehGiG~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpg 492 (500)
.+.+.++++.+++.+++. ++||+.. +.++ ..+..++...|+ .++.|+++|+.|||+|+||..
T Consensus 352 ~~~~~~~~~~~~~~~lv~-~~gG~~~wgk~~--~~~~~~~~~~Yp--~~~~f~~vk~~~DP~g~f~n~ 414 (422)
T 2vfr_A 352 EDTAAVLPVVRRLEEALV-PFAARPHWGKVF--TVPAGELRALYP--RLADFGALAGALDPAGKFTNA 414 (422)
T ss_dssp SCHHHHHHHHHHHHHHHG-GGTCEECTTSCC--CCCHHHHHTTCT--THHHHHHHHHHHCTTCTTCCH
T ss_pred CCchhHHHHHHHHHHHHH-HcCCcccccccC--CCCHHHHHHHCc--CHHHHHHHHHHhCCCCccCCH
Confidence 345566778888888885 8999986 6644 456678888887 589999999999999999853
No 39
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=88.60 E-value=0.12 Score=49.17 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred CCCccCccccccCccccccc-cee-------Ee--cC--CCCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeE
Q psy4699 70 IPVAEGEAEDASRMEEGLRG-HLE-------ME--NT--QHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKF 137 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG-~~~-------vV--g~--~~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~ 137 (500)
.++++...+|++ .|| .++ +| |. .+.+...++.+.+...+.|| |||++++||.|.+
T Consensus 107 GtvGGav~~NaG-----ayG~e~~d~v~~v~vv~~G~v~~~~~~~l~~~YR~s~~~~~g---IVt~~~~~L~~~~----- 173 (268)
T 2gqt_A 107 AQVGGAVKMNAG-----TRFGEMADALEAVEVFHDGAFHVYCPEELGFGYRKSHLPPGG---IVTRVRLKLKERP----- 173 (268)
T ss_dssp CBHHHHHHTTCE-----ETTEEGGGGEEEEEEEETTEEEEECGGGSCCBTTBCCCSTTC---EEEEEEECCEECC-----
T ss_pred chhHHHHHhccc-----cCchhHHhheeEEEEECCCcEEEEchHHcccccCCCCcCCCc---eEEEEEEEEEeCC-----
Confidence 478888877755 599 465 33 21 11223344444554555566 9999999999985
Q ss_pred EEEEcCCHHHHHHHHHHHHH
Q psy4699 138 GSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 138 ~~~~f~~~~~a~~~~~~l~~ 157 (500)
++++.+.++.+.++++
T Consensus 174 ----~~~i~~~~~~v~~~R~ 189 (268)
T 2gqt_A 174 ----KEEILRRMAEVDRARK 189 (268)
T ss_dssp ----HHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 4566666666666543
No 40
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=83.78 E-value=0.84 Score=44.94 Aligned_cols=82 Identities=10% Similarity=-0.047 Sum_probs=47.3
Q ss_pred CCCccCccccccCcccccccc-ee-------Ee-c--CC---CCC--CCCCCCccccccccCccceeeeeeEEEeeecCc
Q psy4699 70 IPVAEGEAEDASRMEEGLRGH-LE-------ME-N--TQ---HPN--EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPR 133 (500)
Q Consensus 70 ~~~~g~~a~~~sg~~~~~yG~-~~-------vV-g--~~---~~k--~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~ 133 (500)
.++|+...+|.+. ||. +. +| . +. +.+ ...||.- .+|.+++|++||||+++|||.|.|.
T Consensus 110 GtVGGa~~~NaGa-----yG~ei~d~v~~v~vv~~~~G~v~~~~~~d~~~gYR~-s~~~~~~~~~gIVt~v~~~L~~~~~ 183 (340)
T 1uxy_A 110 GCVGSSPIQNIGA-----YGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRD-SIFKHEYQDRFAIVAVGLRLPKEWQ 183 (340)
T ss_dssp SBGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEETGGGTCBTTB-CGGGTTTTTTEEEEEEEEEEESSCC
T ss_pred cchhHHHHhcccc-----chhhHHhheeEEEEEECCCCcEEEEeHHHhccccCc-CccCCcCCCCEEEEEEEEEEEcCCC
Confidence 4778877766543 885 54 33 1 11 112 2344443 2566788999999999999999863
Q ss_pred ceeE-EE-----EEcCCHHHHHHHHHHHHH
Q psy4699 134 CQKF-GS-----ILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 134 ~~~~-~~-----~~f~~~~~a~~~~~~l~~ 157 (500)
.... .- ...++..+.++.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 213 (340)
T 1uxy_A 184 PVLTYGDLTRLDPTTVTPQQVFNAVCHMRT 213 (340)
T ss_dssp CCCCSGGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccccccHHHHHHHHHHHHH
Confidence 3200 00 012344566666665553
No 41
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=81.38 E-value=0.97 Score=48.44 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=27.8
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHhhccc
Q psy4699 5 KFVTEYTKINADKNDKAVKDLVNLLFETSLL 35 (500)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~ll~~ta~l 35 (500)
-|+.|++++++|++++.+++++++|||+|+|
T Consensus 605 li~~l~~~~~~~~~~~~~~~~~~~l~d~All 635 (666)
T 2o1u_A 605 LIKDMLRRVKEDEDDKTVSDLAVVLFETATL 635 (666)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 3778888888888889999999999999999
No 42
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=76.96 E-value=5.8 Score=40.90 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=62.8
Q ss_pred eeeeeeccchHHHHHHHHHHHHHHHHhcCCcee-eeeeee--------eeeecCCccEEEEEeccCCCCCCchHHHHHHH
Q psy4699 274 FETSVPWDKTVLLCINVKKRLTQECTALSIKFF-ETSCRV--------TQTYDAGSCIYFYFGFNARDFENPDQTLTYLQ 344 (500)
Q Consensus 274 ~d~~vp~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~--------~h~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (500)
.+++||.+ .++.++++.+.+. +.+.... .+..|+ |..++ |+.+.+++ +.. . ..+.+.
T Consensus 355 ~e~~vP~~-~~~al~~l~~~i~----~~~~~~~~~v~~R~~~~d~~~LS~~~~-~~tlal~~--~~~--~----~~~~~~ 420 (481)
T 4feh_A 355 YQFVIPTE-AVDEFKKIIGVIQ----ASGHYSFLNVFKLFGPRNQAPLSFPIP-GWNICVDF--PIK--D----GLGKFV 420 (481)
T ss_dssp EEEEEETT-CHHHHHHHHHHHH----HTTCCCSCCEEEEECCCCSCTTCCCCS-EEEEEEEE--ECC--T----THHHHH
T ss_pred EEEEeccc-HHHHHHHHHHHHH----hcCCCceEEEEEEEeCCCCccCCCCCC-ceEEEEEc--cCC--c----cHHHHH
Confidence 48999999 9999987765553 3443321 111122 12222 33344442 211 1 245666
Q ss_pred HHHHHHHHHcCCceeeeccCCcccccccccccCHHHHHHHHHHHHhcCCCCccc
Q psy4699 345 HCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFA 398 (500)
Q Consensus 345 ~~~~~~~~~~gG~~s~~hg~g~~~~~~~~~~~~~~~~~~~~~~K~~~dP~~lln 398 (500)
+++-+.+.++||.+.--.-... ..+.+...|. .++.+.++|+.+||+++|.
T Consensus 421 ~~le~i~~~~gGRphw~K~~~~-~~~~~~~~YP--~~~~F~~lr~~~DP~g~F~ 471 (481)
T 4feh_A 421 SELDRRVLEFGGRLYTAKDSRT-TAETFHAMYP--RVDEWISVRRKVDPLRVFA 471 (481)
T ss_dssp HHHHHHHHHTTCEECGGGCSSC-CHHHHHHHCT--THHHHHHHHHHHCTTCCBC
T ss_pred HHHHHHHHHcCCEecchhccCC-CHHHHHHhCc--CHHHHHHHHHhhCCccccC
Confidence 6777888999998765332222 2333444443 5788999999999998654
No 43
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=75.56 E-value=1.3 Score=44.70 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcC-CCchHHHHHHHHHHhhcccc
Q psy4699 5 KFVTEYTKINAD-KNDKAVKDLVNLLFETSLLP 36 (500)
Q Consensus 5 ~~~~l~~~~~~~-~~~~~~~~~~~ll~~ta~l~ 36 (500)
-|+.|+++.++| ++++.+++++++|||+|+|.
T Consensus 349 li~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~ 381 (405)
T 2cge_A 349 IIKELKKRVDEGGAQDKTVKDLTKLLYETALLT 381 (405)
T ss_dssp HHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCHHHHHHHHHHHHHHHHHh
Confidence 378888887766 66788999999999999763
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=71.09 E-value=3.9 Score=31.98 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|..+.+...+.-..+.++++.|.+.++|..|+..|-
T Consensus 23 Lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 23 LNKQQSEEDVLRLF----QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp CCTTCCHHHHHHHH----TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 34455556777888 46788988888766654556789999999999999998754
No 45
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=69.87 E-value=3.5 Score=31.54 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=41.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+.-..+.++++.|.+.++|..++..+-
T Consensus 24 lp~~~~~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 24 LEARVREEILYELF----LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 34445556778888 46788998887766655556789999999999999998753
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.21 E-value=4.5 Score=31.37 Aligned_cols=55 Identities=7% Similarity=0.055 Sum_probs=41.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+.-..+.++++.|.+.++|..|+..+-
T Consensus 25 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 25 LPFSCTKEELEEIC----KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp CCTTCCHHHHHHHH----TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 34445556777888 46788888888766644556789999999999999998754
No 47
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=68.58 E-value=4 Score=32.08 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=41.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| +.+|-|..+.+...+.-....++++.|.+.++|..|+..|-
T Consensus 37 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 37 LDFGVSDADIQELF----AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34445555677888 46788888888777654567789999999999999998753
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=67.66 E-value=5.6 Score=31.79 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=40.4
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+=-+|..+| ..+|-|+++.|-..+. -..+.++++.|.+.++|.+|+..+-
T Consensus 17 ~~te~~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 17 NVRETFLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp TCCHHHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 33444677788 5788999998877665 4567789999999999999999854
No 49
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.48 E-value=7.6 Score=30.81 Aligned_cols=55 Identities=7% Similarity=-0.003 Sum_probs=41.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|+.+.+...+.-..+.++++.|.+.++|..++..|-
T Consensus 33 lp~~~t~~~l~~~F----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 33 LPLSMDEQELENML----KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp CCTTCCHHHHHHTT----TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 44555556788888 46788888887666544556789999999999999998754
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.67 E-value=6.3 Score=30.64 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|+.+.+... .-....++++.|.+.++|..|+..+-
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 23 LDDGIDDERLRKAF----SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp CCTTCCHHHHHHTT----TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 34445556777888 46788888887665 33556789999999999999998754
No 51
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=66.18 E-value=8.3 Score=39.39 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=29.1
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 462 HWYPEHVSQVGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 462 ~~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
.+....||+..++-+++||+.+||+|+|.-..-|+|
T Consensus 421 ~~~~~~yG~~n~~rL~~iK~kyDP~~vF~~~~~I~p 456 (459)
T 2bvf_A 421 EMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456 (459)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHCTTCCCCSSSCCCC
T ss_pred HHHHHHhCcchHHHHHHHHHHhCcccccCCCCCCCC
Confidence 455567887669999999999999999986665655
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.91 E-value=5.5 Score=31.67 Aligned_cols=55 Identities=9% Similarity=0.069 Sum_probs=41.6
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+.-..+.++++.|.+.++|..++..|-
T Consensus 23 lp~~~~~~~l~~~f----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 23 LDYKVGWKKLKEVF----SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCTTCCHHHHHHHH----TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34445556777878 46788988887766654556789999999999999998764
No 53
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=64.49 E-value=8 Score=30.65 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=42.7
Q ss_pred CccccccccCccceeeeeeEEEeeec--CcceeEEEEEcCCHHHHHHHHHHHHHcC--CCccEEEeechH
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRPQ--PRCQKFGSILFPNFEAGVKCLREIAKKR--CQPSSIRLVDNV 171 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p~--P~~~~~~~~~f~~~~~a~~~~~~l~~~~--~~p~a~el~d~~ 171 (500)
||...| +.+|-|+++.+...|. +..+..+++.|.+.++|.+|+..|-... -++..+++.+..
T Consensus 29 dl~~~f----~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 29 ETKEEC----EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 94 (105)
T ss_dssp HHHHHG----GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred HHHHHH----HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence 455556 5788999998865543 3457889999999999999999875221 134455555443
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=60.87 E-value=8.4 Score=28.69 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|..+.+...+ ....+.++++.|.+.++|..++..+-
T Consensus 15 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 15 SPEITTAAIAAAF----APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp CTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 4444455677777 467888888776554 23456789999999999999998753
No 55
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.46 E-value=7.6 Score=29.52 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecC-cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP-RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P-~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|..+.+...+.. ..+.++++.|.+.++|..++..+-
T Consensus 23 lp~~~t~~~l~~~f----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 23 LSLYTTERDLREVF----SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp CCSSCCHHHHHHHH----HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 34444555777888 45788888887666542 456789999999999999998753
No 56
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=60.32 E-value=7.5 Score=30.29 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+=-||..+| ..+|-|+.+.+..-+. ...+.++++.|.+.++|..|+..|-
T Consensus 27 Lp~~~te~~L~~~F----~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 27 LPQNMTQDELRSLF----SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 44455556788888 4678888887765443 3455688999999999999998753
No 57
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=59.99 E-value=1.8 Score=46.47 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcC-CCchHHHHHHHHHHhhcccc
Q psy4699 5 KFVTEYTKINAD-KNDKAVKDLVNLLFETSLLP 36 (500)
Q Consensus 5 ~~~~l~~~~~~~-~~~~~~~~~~~ll~~ta~l~ 36 (500)
-|+.|+.+.++| ++++.+++++++|||+|+|.
T Consensus 621 li~~L~~~~~~d~~~~~~~~~~~~~Lyd~All~ 653 (677)
T 2cg9_A 621 IIKELKKRVDEGGAQDKTVKDLTKLLYETALLT 653 (677)
T ss_dssp HHHHHHHHHHTCCSSCSSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCHHHHHHHHHHHHHHHHHh
Confidence 378888888766 56777999999999999763
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=59.96 E-value=7.5 Score=30.96 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|..+.|...+. -..+.++++.|.+.++|..++..+-
T Consensus 33 Lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 33 LPQEFGDQDLLQMF----MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp CCSSCCHHHHHHHH----GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 44455556788888 4678898888776653 3455689999999999999998753
No 59
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=59.39 E-value=8.6 Score=39.74 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 471 VGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 471 ~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
+.++.+++||+.+||+|+|+-.-=|+|
T Consensus 469 ~Ny~RL~~IK~kyDP~nvF~~~qsI~P 495 (500)
T 3tsh_A 469 GNFERLAITKGKVDPTDYFRNEQSIPP 495 (500)
T ss_dssp GGHHHHHHHHHHHCTTCCSCCTTSCCC
T ss_pred HHHHHHHHHHHHhCcccccCCCCCCCC
Confidence 467889999999999999975544554
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.39 E-value=7.7 Score=30.14 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|..+.+...+. ..+.++++.|.+.++|..|+..+-
T Consensus 23 lp~~~t~~~l~~~f----~~~G~v~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 23 IPFRFRDPDLRQMF----GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp CCTTCCHHHHHHHG----GGTSCEEEEEEECCTT-TTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEecCC-CCcEEEEEEECCHHHHHHHHHHhC
Confidence 34445556777888 4678888887766554 256789999999999999998753
No 61
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=59.06 E-value=8.3 Score=30.86 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=39.5
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|..+.|...+. ..+.++++.|.+.++|..|+..+-
T Consensus 14 p~~~te~~L~~~F----~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 14 DKSIDNKALYDTF----SAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CTTCCHHHHHHHH----GGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----hccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcC
Confidence 4444455778888 4788898887755443 345689999999999999998754
No 62
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=58.12 E-value=9.6 Score=29.68 Aligned_cols=55 Identities=9% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+...+. -..+.++++.|.+.++|..|+..+-
T Consensus 31 lp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 31 VHEEATEEDIHDKF----AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 44455556788888 5678898887765544 3456789999999999999998754
No 63
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=57.75 E-value=3.8 Score=42.75 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=26.4
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCCCCCCCccCCC
Q psy4699 463 WYPEHVSQVGLELYRSTKQALDPNNVFASGNLLLPS 498 (500)
Q Consensus 463 ~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~~ 498 (500)
|....+| ..++.+++||+.+||+|+|+-..-|+|.
T Consensus 486 ~~~~y~g-~n~~RL~~iK~kyDP~~vF~~~qsI~p~ 520 (521)
T 2ipi_A 486 WYTLYYK-GNYPRLQKVKARWDPRDVFRHALSVRPP 520 (521)
T ss_dssp HHHHHHG-GGHHHHHHHHHHHCTTCCSCCTTCCCCC
T ss_pred HHHhhhh-hHHHHHHHHHHHhCCcCEecCCCCCCCC
Confidence 3333455 4589999999999999999876666553
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=57.33 E-value=6 Score=31.29 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=37.8
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~ 157 (500)
+.+.+--+|..+| +.+|-|+.+.+- +.+..+++.|++.++|..|+..+-.
T Consensus 30 p~~~te~~L~~lF----~~fG~V~~v~i~-----~~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 30 IDGVVEADLVEAL----QEFGPISYVVVM-----PKKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CTTCCHHHHHHHH----GGGSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH----hccCCEEEEEEE-----cCCCEEEEEECCHHHHHHHHHHhcC
Confidence 3344555788888 478889987762 2357899999999999999998753
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=56.70 E-value=5.9 Score=30.87 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=36.5
Q ss_pred CccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+|..+| +.+|-|+.+.|..-+. -..+.++++.|.+.++|..|+..+-
T Consensus 28 ~L~~~F----~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 28 ALTSLF----SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp HHHHHH----HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHH----HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 566777 4678888887766554 3456789999999999999998754
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=56.28 E-value=9.9 Score=27.95 Aligned_cols=54 Identities=6% Similarity=-0.004 Sum_probs=38.8
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|..+.+...+. ...+..+++.|.+.++|..++..+-
T Consensus 10 p~~~t~~~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 10 NVNVDDETLRNAF----KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp CTTCCHHHHHHHH----TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 3344445677777 4677888887766543 3446789999999999999998753
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=56.10 E-value=4.8 Score=32.42 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=39.5
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--||..+| ..+|-|+.+.+...+.-....++++.|.+.++|..|+..+
T Consensus 16 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 16 NRETNEKMLKAVF----GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp TTTCCHHHHHHHH----HTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHH----HhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 4444555677777 4567788888776654455679999999999999999874
No 68
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=55.88 E-value=3.8 Score=30.45 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=33.5
Q ss_pred CCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 105 FSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 105 ~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
-+|..+| +.+|-|+.+.+. ...-..+.++++.|.+.++|..|+..+
T Consensus 22 ~~l~~~F----~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 22 NVIHKIF----SKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp HHHHHHH----HTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred HHHHHHH----hhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 3566777 467888887764 222244678999999999999998864
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.86 E-value=11 Score=29.11 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=40.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--+|..+| ..+|-|..+.+...+. ...+.++++.|.+.++|..|+..+
T Consensus 23 lp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 23 LSEDTRETDLQELF----RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp CCTTCCHHHHHTTS----TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 34455556777788 4678898888765543 345668999999999999999874
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.76 E-value=6.2 Score=30.71 Aligned_cols=54 Identities=7% Similarity=-0.072 Sum_probs=38.7
Q ss_pred CCCCCCCCccccccccCcc-ceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGT-LGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGT-LGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| .. +|-|+.+.+...+.-..+.++++.|.+.++|..|+..+-
T Consensus 18 p~~~t~~~l~~~F----~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 18 TPDVDDGMLYEFF----VKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp CTTCCHHHHHHHH----HHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHH----HHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc
Confidence 3344445667777 34 677888877665544556789999999999999998743
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=55.71 E-value=11 Score=28.28 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|..+.+.. ..-..+.++++.|.+.++|..++..+-
T Consensus 16 lp~~~t~~~l~~~f----~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 16 LPFDFTWKMLKDKF----NECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34444555677777 4578888877764 222456789999999999999998753
No 72
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.55 E-value=9.1 Score=30.21 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=36.7
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--||..+| ..+|-|+.+.|- + .+.++++.|++.++|.+|+..+-
T Consensus 27 ~~te~dL~~lF----~~fG~V~~v~i~--~---~kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 27 KNLRYQLLQLV----EPFGVISNHLIL--N---KINEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp SSHHHHHHTTT----GGGSCEEEEEEC--S---SSSCEEEEESSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH----HhcCCEEEEEEE--c---CCCEEEEEECCHHHHHHHHHHHc
Confidence 44556788888 588999998763 2 23578999999999999999875
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.36 E-value=12 Score=27.70 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=38.9
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|..+.+...+. -..+.++++.|.+.++|..++..|-
T Consensus 14 p~~~t~~~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 14 QPGTTDQDLVKLC----QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CTTCCHHHHHTTS----TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 4444455677777 4678888887766543 2345689999999999999998764
No 74
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=55.35 E-value=13 Score=29.33 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=32.7
Q ss_pred ccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 116 GTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+|-|+++.+...+....+..+++.|.+.++|..|+..+-
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC
Confidence 46788999888654444567899999999999999999864
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=54.94 E-value=8 Score=29.98 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeee--cCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP--QPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p--~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| +.+| |..+.+...+ .-..+.++++.|.+.++|..++ .+
T Consensus 27 Lp~~~t~~~l~~~F----~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l 80 (100)
T 2j76_E 27 LPYDVTEESIKEFF----RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL 80 (100)
T ss_dssp CSSCCSSSHHHHHS----CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT
T ss_pred CCCCCCHHHHHHHH----HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc
Confidence 45566777888888 4578 8887765444 2234568999999999999998 64
No 76
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=54.59 E-value=9.4 Score=30.30 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=40.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++...+--||..+| ..+|-|..+.+...+ ....+.++++.|.+.++|..|+..+-
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 23 LSPEITTEDIKAAF----APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34455556778888 467888888776554 23456789999999999999998753
No 77
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=54.54 E-value=16 Score=30.98 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=40.1
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|+.+.+...+....+..+++.|.+.++|..|+..|-
T Consensus 104 ~~~~t~~~l~~~F----~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 104 SKKCTENDIRVMF----SSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp CTTCCHHHHHHHH----GGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHH----HhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 3344445677777 46778988888665554556789999999999999999865
No 78
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.34 E-value=10 Score=28.74 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|..+.+...+. -..+.++++.|.+.++|..++..+-
T Consensus 14 p~~~t~~~l~~~f----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 14 HFNITEDMLRGIF----EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CTTCCHHHHHHHH----TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 3344445677777 4677888887765543 2345689999999999999998754
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.34 E-value=7.5 Score=30.63 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=39.4
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--+|..+| +.+|-|+.+.|...+.-..+.++++.|.+.++|..|+.
T Consensus 20 p~~~te~~L~~~F----~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 20 PTDATLDDIKEWL----EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp CTTCCHHHHHHHH----HTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----hhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 4444555677777 46888999988876665667899999999999988876
No 80
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.22 E-value=9.4 Score=30.77 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=39.4
Q ss_pred CCCC-CCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHH
Q psy4699 98 HPNE-DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 98 ~~k~-~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~ 157 (500)
++.+ .+--||..+| ..+|-|+.+.|- ..+.++++.|.+.++|..|+..+-.
T Consensus 33 Lp~~~~te~~L~~lF----~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 33 LPHSGYSDSAVLKLA----EPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCSSCCSHHHHTTT----TTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHH----HhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3444 5566788888 578889988772 2357899999999999999998753
No 81
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=52.49 E-value=22 Score=28.74 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=40.6
Q ss_pred ccceeeeeeEEEeeec-----CcceeEEEEEcCCHHHHHHHHHHHHHc--CCCccEEEeechHhH
Q psy4699 116 GTLGVITKVVLKIRPQ-----PRCQKFGSILFPNFEAGVKCLREIAKK--RCQPSSIRLVDNVQL 173 (500)
Q Consensus 116 GTLGIITe~tlkl~p~-----P~~~~~~~~~f~~~~~a~~~~~~l~~~--~~~p~a~el~d~~~~ 173 (500)
+.+|-|+++.+..-+. ++.+..+++.|.+.++|..|+..|-.. +-++..+++.+....
T Consensus 47 ~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 47 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 111 (118)
T ss_dssp TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhc
Confidence 5788899888876543 234578899999999999999987522 124455666655433
No 82
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.26 E-value=6.5 Score=29.87 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| ..+|-|..+.+...+. ...+.++++.|.+.++|..++..+
T Consensus 24 lp~~~t~~~l~~~f----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 24 LPFSLTNNDLYRIF----SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp CCTTSCHHHHHHHT----TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc
Confidence 34445555677888 4678888887765544 234568899999999999999864
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=52.19 E-value=12 Score=30.82 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+. ...+.++++.|.+.++|..|+..+-
T Consensus 54 Lp~~~te~~L~~~F----~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 54 LSLYTTERDLREVF----SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp CTTSCCHHHHHHHH----TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 44455556788888 4678888887765543 2456689999999999999998753
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=50.44 E-value=15 Score=30.67 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=38.8
Q ss_pred CCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 103 QAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 103 ~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+--+|..+| ..+|-|..+.+...+.......+++.|.+.++|..++..+-
T Consensus 13 t~~~l~~~f----~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 13 TEDILKQYF----QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CHHHHHHHH----GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHH----HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 334566777 46788998888777766677899999999999999998754
No 85
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.00 E-value=10 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=39.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|..+.++... ..+.++++.|.+.++|..|+..+-
T Consensus 30 Lp~~~t~~~l~~~F----~~~G~v~~~~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 30 LPPDIRTKDIEDVF----YKYGAIRDIDLKNRR--GGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEECCSS--SSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEECC--CCCcEEEEEECCHHHHHHHHHHcC
Confidence 34455556778888 467889888874433 345688999999999999998753
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=49.71 E-value=15 Score=28.93 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=40.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+...+. ...+.++++.|.+.++|..++..+-
T Consensus 34 Lp~~~te~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 89 (108)
T 2jrs_A 34 LHFNITEDMLRGIF----EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89 (108)
T ss_dssp CCSSCCHHHHHHHH----TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 34455566788888 4678898888766554 2445689999999999999998753
No 87
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.55 E-value=9.1 Score=28.86 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=35.5
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|..+.+. +.++++.|.+.++|..++..+-
T Consensus 17 p~~~t~~~l~~~F----~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 17 PREATEQEIRSLF----EQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp CSSCCHHHHHHHH----HTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhc
Confidence 4444555677777 467888888775 4688999999999999998753
No 88
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.34 E-value=6.4 Score=30.30 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|..+.+...+ ....+.++++.|.+.++|..++..+-
T Consensus 17 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 17 SYTSSEEDLEKLF----SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHH----HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 4444555677777 467788877765544 33455789999999999999998753
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=49.23 E-value=10 Score=28.75 Aligned_cols=55 Identities=9% Similarity=-0.096 Sum_probs=39.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecC-cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP-RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P-~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|.|..+.+...+.. ..+.++++.|.+.++|..++..+-
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 23 MPFTVSIDEILDFF----YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp CCTTCCHHHHHHHT----TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 44455556777888 45777877666554432 456789999999999999998753
No 90
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=48.86 E-value=7 Score=29.16 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=38.0
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecC-c-ceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP-R-CQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P-~-~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|+.+.+...+.. . ...++++.|.+.++|..++..+-
T Consensus 13 p~~~t~~~l~~~F----~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 13 TRNVTKDHIMEIF----STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC
Confidence 3344445677777 46788887766554431 1 45689999999999999998753
No 91
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.76 E-value=11 Score=29.24 Aligned_cols=54 Identities=6% Similarity=0.016 Sum_probs=40.1
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|..+.+...+. ..+.++++.|.+.++|..|+..+-
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 23 LSRDVTEVLILQLF----SQIGPCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CCTTCCHHHHHHHH----HHHSCEEEEEEECCCC-SSCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHH----HhcCCEeEEEEEecCC-CCCCEEEEEECCHHHHHHHHHHhC
Confidence 34445556777888 5678898887766543 246789999999999999998754
No 92
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.66 E-value=8.6 Score=29.98 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=39.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeee--cCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP--QPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p--~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--+|..+| ..+|-|+.+.+...+ .-..+.++++.|.+.++|..|+..+
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 23 IPFQANQREIRELF----STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHH----HccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 34455556777888 457788887765442 2244678999999999999999876
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=48.59 E-value=10 Score=30.69 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|+.+.+...+.-..+.++++.|.+.++|..++..+-
T Consensus 43 lp~~~t~~~l~~~F----~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 43 LDFGVSDADIQELF----AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 97 (124)
T ss_dssp CCSSCCHHHHHHHH----HTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC
Confidence 34445556777888 35777888887666544556799999999999999998764
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.30 E-value=12 Score=28.58 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=38.7
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecC----cceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP----RCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P----~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--+|..+| ..+|-|..+.+...+.. ..+.++++.|.+.++|..++..|
T Consensus 14 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l 70 (98)
T 2cpf_A 14 NFSTTEETLKGVF----SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70 (98)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh
Confidence 3344445677777 36778888887766541 45678999999999999999874
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=48.26 E-value=9.9 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=38.0
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| +.+|-|..+.+...+. ...+..+++.|.+.++|..++..+-
T Consensus 16 ~~~~~~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 16 AEEVDDKVLHAAF----IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CTTCCHHHHHHHH----GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 3344445677777 4678888877655433 2345688999999999999998753
No 96
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.88 E-value=9.6 Score=29.23 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=34.3
Q ss_pred CCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 102 DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 102 ~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.+--||..+| ..+|-|..+.+. ..+.++++.|.+.++|..|+..+-
T Consensus 25 ~t~~~l~~~F----~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 25 MTPTLLRGAF----SPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp CCHHHHHHHH----TTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTT
T ss_pred CCHHHHHHHH----hhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhC
Confidence 3445667777 467888888772 445688999999999999998753
No 97
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=47.48 E-value=6.1 Score=40.98 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=26.7
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCCCCCCCccCCC
Q psy4699 463 WYPEHVSQVGLELYRSTKQALDPNNVFASGNLLLPS 498 (500)
Q Consensus 463 ~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~~ 498 (500)
|....||+ .++-+++||+.+||+|+|+-..-|+++
T Consensus 445 ~~~~~yG~-n~~RL~~iK~kyDP~~vF~~~~~i~~~ 479 (503)
T 1zr6_A 445 AQKLYWRG-NLEKLQAIKAKYDPEDVFGNVVSVEPI 479 (503)
T ss_dssp HHHHHHGG-GHHHHHHHHHHHCTTCTTCCTTSCCCC
T ss_pred HHHHHHHh-HHHHHHHHHHHhCchhhcCCCCCCCch
Confidence 33446675 699999999999999999866555554
No 98
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.20 E-value=12 Score=29.72 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=33.7
Q ss_pred CccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
||..+| +.+|-|+++.+ +.+..+.++++.|.+.++|..|+..|-
T Consensus 42 ~l~~~f----~~~G~v~~v~i---~~~~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 42 DLRVEC----SKFGQIRKLLL---FDRHPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp HHHHHG----GGTSCCSEEEE---ETTCTTCEEEEECSCHHHHHHHHHHST
T ss_pred HHHHHH----HccCCEeEEEE---ecCCCCEEEEEEECCHHHHHHHHHHcC
Confidence 566677 57788999866 333456789999999999999998753
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.69 E-value=21 Score=28.06 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=38.1
Q ss_pred CCCCCCCCcc---ccccccCccceeeeeeEEEeeecC----cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEH---AQSTVEQGTLGVITKVVLKIRPQP----RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~---~LfiGSEGTLGIITe~tlkl~p~P----~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||. .+| +.+|-|+++.+...+.. ..+.++++.|.+.++|..|+..|-
T Consensus 24 p~~~~~~~l~~~~~~F----~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 24 SQRLADPEVLKRPEYF----GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CTTTCCHHHHHSTTTT----TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHh----hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 3344555676 777 57888998887433321 234699999999999999998753
No 100
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=46.49 E-value=9.8 Score=29.09 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=37.6
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|..+.+...+. -..+.++++.|.+.++|..|+..+-
T Consensus 11 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 11 PYDQTEEQILDLC----SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3344445677777 4567788876654432 2446789999999999999998753
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=46.23 E-value=8.8 Score=30.47 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|..+.+... +..+.++++.|.+.++|..|+..+-
T Consensus 17 p~~~t~~~l~~~F----~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 17 PYKITAEEMYDIF----GKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 3444445677777 46788888777543 3446788999999999999998753
No 102
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=46.09 E-value=13 Score=29.42 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=37.2
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+. +.++++.|.+.++|..++..|-
T Consensus 39 Lp~~~t~~~L~~~F----~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 39 FPLDVQESELNEIF----GPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVH 86 (108)
T ss_dssp SCTTCCHHHHHHHH----TTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcC
Confidence 34455556778888 467788888776 5789999999999999998753
No 103
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.03 E-value=7.1 Score=30.45 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec--CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ--PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~--P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| +.+| |+.+.+...+. -..+.++++.|.+.++|..++ .+
T Consensus 23 lp~~~t~~~l~~~F----~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l 76 (104)
T 1wi8_A 23 LPYDVTEESIKEFF----RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL 76 (104)
T ss_dssp CCSSCCHHHHHHHT----TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GG
T ss_pred CCCcCCHHHHHHHH----HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hc
Confidence 34455556778888 4568 88777655443 234668899999999999998 64
No 104
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=45.91 E-value=18 Score=27.67 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=37.3
Q ss_pred CCCCCCCCccccccccCccceeeee--------eEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITK--------VVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe--------~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|.|.. +.+...+. ...+.++++.|.+.++|..++..+-
T Consensus 22 p~~~t~~~l~~~F----~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 22 GENVTIESVADYF----KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSSCCHHHHHHHH----TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 3344445677777 46778887 55544332 3456789999999999999998754
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.41 E-value=15 Score=28.70 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=36.8
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+...+--||..+| ..+|-|+.+.+. + .+.++++.|.+.++|..|+..+.
T Consensus 24 p~~~te~~L~~~F----~~fG~v~~v~i~--~---~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 24 PGEVTETEVIALG----LPFGKVTNILML--K---GKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CTTCCHHHHHHTT----TTTSCEEEEEEE--T---TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH----HhcCCEEEEEEE--C---CCCEEEEEECCHHHHHHHHHHhc
Confidence 3344556778888 578888887542 2 26789999999999999998764
No 106
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.31 E-value=7.9 Score=28.03 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=38.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| +.+|-|..+.+...+. ...+..+++.|.+.++|..++..+
T Consensus 8 lp~~~t~~~l~~~F----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 8 LSWQTTQEGLREYF----GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp CCSSCCSHHHHHHH----TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 34445556677777 4577788887765543 345678999999999999988753
No 107
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=45.07 E-value=15 Score=28.25 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=35.6
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+--+|..+| +.+|-|..+.+. +.++++.|.+.++|..|+..+
T Consensus 34 ~~t~~~L~~~F----~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 34 NVSKEDLFRIF----SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXE 77 (97)
T ss_dssp CCCHHHHHHHH----GGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHH----HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHc
Confidence 55566788888 467889888872 578899999999999999875
No 108
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=44.97 E-value=12 Score=30.88 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=41.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+. ...+.++++.|.+.++|..|+..+-
T Consensus 50 Lp~~~~~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 105 (139)
T 1u6f_A 50 IPTTVDEVQLRQLF----ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp CSTTCCHHHHHHHH----HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 44455556788888 4688898888876654 2446789999999999999998753
No 109
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.90 E-value=12 Score=29.47 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=33.3
Q ss_pred CCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHH
Q psy4699 105 FSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 105 ~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
-||..+| +.+|-|+.+.|. ...+.++++.|.+.++|..|+..
T Consensus 32 ~~L~~~F----~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 32 DVLLRLL----QKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHH----HTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHH----HhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHh
Confidence 3567788 577889888775 24557899999999999999886
No 110
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.74 E-value=11 Score=29.09 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+. ...+.++++.|.+.++|..++..+-
T Consensus 20 Lp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 20 LSFDTNEQSLEQVF----SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCTTCCHHHHHHHH----HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 34444555677777 4678888877755443 2345689999999999999998754
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=44.73 E-value=16 Score=30.86 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=40.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| ..+|-|+.+.|...+. -....++++.|.+.++|..|+..|
T Consensus 47 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 47 LSFYTTEEQIYELF----SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 44455556788888 4678888877765554 335578999999999999999874
No 112
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.63 E-value=14 Score=28.80 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=36.6
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
++.+.+--||..+| ..+|++ ++.|...+.-..+.++++.|.+.++|..|+.
T Consensus 23 Lp~~~te~~l~~~F----~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 23 LPYRATENDIYNFF----SPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp CCTTCCHHHHHHSS----CSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45555666788888 357755 7766655543456689999999999999883
No 113
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.45 E-value=19 Score=29.48 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=36.1
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeecCccee-EEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQK-FGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~-~~~~~f~~~~~a~~~~~~l~ 156 (500)
..+--+|..+| +.+|-|.++.+- .++ . .+++.|.|.++|..|+..|-
T Consensus 36 ~vt~~~L~~~F----s~yG~V~~v~i~--~~~---Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 36 PITVDVLYTVC----NPVGKVQRIVIF--KRN---GIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp CCCHHHHHHHH----TTTSCEEEEEEE--ESS---SEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHH----HhcCCEEEEEEE--eCC---CCEEEEEECCHHHHHHHHHHhC
Confidence 33444788888 688999998873 332 5 48899999999999999875
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.44 E-value=14 Score=29.08 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~ 157 (500)
++.+.+--||..+| ..+|-|+.+.+. + .+.++++.|.+.++|..++..+-.
T Consensus 23 Lp~~~te~~L~~~F----~~fG~V~~v~i~--~---~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 23 LCESVVEADLVEAL----EKFGTICYVMMM--P---FKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCSSCCHHHHHHHH----TTTSCEEEEEEE--T---TTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HhCCCEEEEEEE--C---CCCEEEEEECCHHHHHHHHHHhcc
Confidence 34445556788888 578889887652 2 357899999999999999998753
No 115
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.94 E-value=20 Score=27.62 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=39.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| +.+|-|..+.+...+. -..+.++++.|.+.++|..++..
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 23 LPWKTTEQDLKEYF----STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCSSCCHHHHHHHH----GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHH----HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34455556778888 4678898888766554 34566899999999999988873
No 116
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.91 E-value=7 Score=30.39 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=39.1
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.+...+. ...+.++++.|.+.++|..|+..+-
T Consensus 21 Lp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 21 LTYRTSPDSLRRVF----EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CCTTCCHHHHHHHH----TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 34444555677777 4577888877765544 3456789999999999999998753
No 117
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=43.85 E-value=20 Score=28.55 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=37.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.|... .++++.|.+.++|..|+..|-
T Consensus 24 Lp~~~t~~~l~~~F----~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 24 LPPSGSWQDLKDHM----REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp CCSSCCTTHHHHHH----GGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhC
Confidence 44556667888888 36778888776322 788999999999999998864
No 118
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=43.81 E-value=12 Score=28.93 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=36.2
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| +.+|-|..+.+. ..+.++++.|.+.++|..++..+-
T Consensus 36 p~~~~~~~l~~~f----~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 36 PHFATEADLIPLF----QNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp CTTCCHHHHHHHH----HTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHH----HhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhC
Confidence 4444555677777 456778877764 345789999999999999998753
No 119
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=43.65 E-value=8.5 Score=30.00 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=39.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|..+.+...+. -..+.++++.|.+.++|..++..+-
T Consensus 21 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 21 IPRNLDEKDLKPLF----EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CCTTCCHHHHHHHH----HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 34455556777888 4678888876654433 2345789999999999999998764
No 120
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.90 E-value=13 Score=28.66 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--+|..+| +.+|-|..+.+...+. -..+.++++.|.+.++|..++..+
T Consensus 17 p~~~~~~~l~~~f----~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 70 (104)
T 1p1t_A 17 PYEATEEQLKDIF----SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70 (104)
T ss_dssp CTTSCHHHHHHHH----HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS
T ss_pred CCcCCHHHHHHHH----HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3344445677777 4577888887766543 244678999999999999999874
No 121
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=42.89 E-value=23 Score=27.84 Aligned_cols=64 Identities=6% Similarity=0.027 Sum_probs=42.9
Q ss_pred CccccccccCccceeeeeeEEEeeec---CcceeEEEEEcCCHHHHHHHHHHHHHc--CCCccEEEeechHhH
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRPQ---PRCQKFGSILFPNFEAGVKCLREIAKK--RCQPSSIRLVDNVQL 173 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p~---P~~~~~~~~~f~~~~~a~~~~~~l~~~--~~~p~a~el~d~~~~ 173 (500)
||...| +.+|-|+++.+..-+. ++....+++.|.+.++|.+|+..|-.. +-++..+++.|....
T Consensus 31 dl~~~f----~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 31 DVRDEC----SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp HHHHHH----HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HHHHHH----HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHH
Confidence 344555 4678888887643321 234678899999999999999987522 225566777766544
No 122
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=42.55 E-value=19 Score=30.43 Aligned_cols=54 Identities=7% Similarity=0.042 Sum_probs=40.9
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecC---cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP---RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P---~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|..+.+...+.. ..+..+++.|.+.++|..++..+-
T Consensus 12 p~~~te~~l~~~F----~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 12 PRTWSEKDLRELF----EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3444445677777 35788998888776654 677899999999999999998754
No 123
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=42.54 E-value=17 Score=26.92 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=37.4
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--+|..+| ..+|-|..+.+...+. -..+.++++.|.+.++|..++.
T Consensus 20 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 20 SWDTSKKDLKDYF----TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp CTTCCHHHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCCHHHHHHHH----HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 4444556777888 4678898888766554 3446688999999999988875
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=42.36 E-value=17 Score=27.76 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=35.4
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--||..+| ..+|-|..+.+. +.++++.|.+.++|..|+..+-
T Consensus 22 ~~t~~~l~~~F----~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~ 66 (96)
T 2kvi_A 22 NVSKEDLFRIF----SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp CCCHHHHHHHH----TTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH----HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcC
Confidence 55556777888 467888888873 4688999999999999998753
No 125
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.34 E-value=12 Score=28.70 Aligned_cols=54 Identities=9% Similarity=-0.102 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| ..+|.|+.+.+...+. -..+.++++.|.+.++|..++..+
T Consensus 23 Lp~~~t~~~l~~~F----~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 23 MPFTVSIDEILDFF----YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp CCTTCCHHHHHHHT----TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 34455556777888 4678887766655433 234678999999999999999874
No 126
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.92 E-value=8.3 Score=31.26 Aligned_cols=47 Identities=4% Similarity=0.045 Sum_probs=35.5
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--+|..+| +.+|-|+.+.+. ..+.+.++.|.+.++|.+|+.+|-
T Consensus 38 ~~te~~L~~~F----~~fG~v~~v~i~-----~~rgfaFV~f~~~~~A~~Ai~~ln 84 (114)
T 2cq2_A 38 GVSRNQLLPVL----EKCGLVDALLMP-----PNKPYSFARYRTTEESKRAYVTLN 84 (114)
T ss_dssp TCCHHHHHHHH----HHHSCEEEEECC-----TTCSCEEEEESSHHHHHHHHHHTT
T ss_pred CCCHHHHHHHH----HhcCCeEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhC
Confidence 34445677777 578888887652 246789999999999999999854
No 127
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.76 E-value=13 Score=29.63 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=37.4
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|+.+.|.. .+.++++.|.+.++|..++..+.
T Consensus 25 p~~vte~dL~~lF----~~fG~V~~v~i~~-----~kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 25 PIDVTEGEVISLG----LPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CTTSCHHHHHHHH----HHHCCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhc
Confidence 4444555777888 5788899887642 25789999999999999998753
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=41.56 E-value=12 Score=28.85 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=36.5
Q ss_pred CCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHH
Q psy4699 100 NEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAK 157 (500)
Q Consensus 100 k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~ 157 (500)
.+.+--+|..+| +.+|-|..+.+... .+.++++.|.+.++|..|+..+-.
T Consensus 10 ~~~t~~~l~~~F----~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 10 TGAGKGELERAF----SYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp SSCSHHHHHHHH----HHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH----HhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCC
Confidence 344445667777 46777887776443 457899999999999999998753
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=41.38 E-value=25 Score=29.13 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=35.5
Q ss_pred CCCCCccccccccCccceeeeeeEEEeeecCcceeE-EEEEcCCHHHHHHHHHHHH
Q psy4699 102 DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKF-GSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 102 ~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~-~~~~f~~~~~a~~~~~~l~ 156 (500)
.+--+|..+| +.+|-|.++.+. +.+ +.+ +++.|++.++|..|++.|-
T Consensus 40 vte~~L~~lF----s~yG~V~~V~i~--~~~--~gfqAFVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 40 VTLDVLHQIF----SKFGTVLKIITF--TKN--NQFQALLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp CCHHHHHHHH----TTSSCEEEEEEE--EET--TEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCHHHHHHHH----hCcCCEEEEEEE--cCC--CCcEEEEEECCHHHHHHHHHHcC
Confidence 3444677888 688889988664 332 345 8999999999999999865
No 130
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.35 E-value=11 Score=28.98 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=37.6
Q ss_pred CCCCCCCCcc----ccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEH----AQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~----~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||. .+| ..+|-|..+.+...+.. +.++++.|.+.++|..|+..+-
T Consensus 18 ~~~~~~~~l~~~l~~~F----~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 18 DYRLSRKELQQLLQEAF----ARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp CTTSCHHHHHHHHHHHH----HHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc----cccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhC
Confidence 3344445666 667 46788888777555443 6689999999999999998754
No 131
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.90 E-value=8.5 Score=29.95 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=38.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--+|..+| ..+|-|+.+.+...+ ....+.++++.|.+.++|..|+..|
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (105)
T 1x5u_A 23 LDEKVSEPLLWELF----LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 77 (105)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh
Confidence 34445556677777 457788887765544 2345568899999999999999874
No 132
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.85 E-value=11 Score=29.99 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=40.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|..+.+...+. -..+.++++.|.+.++|..++ .+-
T Consensus 33 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 33 LAARIRPRDLEDFF----SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp CCTTCCHHHHHHHH----TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CCCCCCHHHHHHHH----HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC
Confidence 45555666788888 4688898888766554 345568999999999999999 753
No 133
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=40.72 E-value=24 Score=28.39 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=38.1
Q ss_pred ccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHHc--CCCccEEEeechHhH
Q psy4699 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKK--RCQPSSIRLVDNVQL 173 (500)
Q Consensus 116 GTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~~--~~~p~a~el~d~~~~ 173 (500)
+.+|-|+++.+ +++..+..+++.|.+.++|..|++.|-.. +-++..+++.+....
T Consensus 39 ~kfG~V~~v~i---~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 39 NKHGGVIHIYV---DKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 95 (114)
T ss_dssp TTTTCCSEEEE---CTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred hccCCEEEEEE---ecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHH
Confidence 46777887766 33334678899999999999999987522 224556666665544
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=40.56 E-value=12 Score=29.44 Aligned_cols=48 Identities=4% Similarity=-0.002 Sum_probs=37.0
Q ss_pred CCCC-CCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNE-DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~-~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+ .+--||..+| ..+|-|+.+.+ .+.++++.|.+.++|..|+..|-
T Consensus 35 l~~~~~t~~~l~~~F----~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 35 LNTALVKKSDVETIF----SKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CCCSSCCHHHHHHHH----GGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHH----HhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcC
Confidence 3444 5556778888 46888998887 35788999999999999998753
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.42 E-value=14 Score=29.73 Aligned_cols=52 Identities=8% Similarity=-0.061 Sum_probs=39.1
Q ss_pred CCCCCCCCCccccccccCcccee---eeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGV---ITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGI---ITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
++.+.+--||..+|- .+|. |+.+.|...+.-..+.++++.|.+.++|..|+.
T Consensus 25 Lp~~~te~~l~~~F~----~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 25 LPWSCSIEDVQNFLS----DCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCTTCCHHHHHHHTT----TSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHH----HcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 455566667888883 3555 888888776665557799999999999998887
No 136
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.30 E-value=11 Score=29.71 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+...+. ..+.++++.|.+.++|..++..+-
T Consensus 37 Lp~~~te~~l~~~F----~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 37 IPFRFRDPDLRQMF----GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp CCTTCCHHHHHHHG----GGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHH----HhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcC
Confidence 44455566788888 4678888887765543 356789999999999999998753
No 137
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=39.74 E-value=15 Score=27.38 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=37.8
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--||..+| ..+|-|..+.+...+. ...+.++++.|.+.++|..++ .+
T Consensus 15 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~ 67 (89)
T 3ucg_A 15 DYGATAEELEAHF----HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 67 (89)
T ss_dssp CTTCCHHHHHHHH----GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG
T ss_pred CCCCCHHHHHHHH----HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc
Confidence 3444445677777 3678899888876653 345678999999999998888 53
No 138
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=39.64 E-value=19 Score=27.77 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=39.2
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+....+..+|..||. ..|=|..+.+-+ ++.+.++.|++.++|..|++.|-
T Consensus 15 L~~~~te~~L~~lF~----q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln 64 (89)
T 2wbr_A 15 LTAQIDGPTLRTLCM----QHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALN 64 (89)
T ss_dssp CCTTCCCHHHHHHHH----HHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHH----hhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhc
Confidence 344577888999993 567787777643 46899999999999999999753
No 139
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=39.62 E-value=18 Score=29.30 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 102 DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 102 ~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.+--||..+| +.+|-|+.+.+. ..+.++++.|.+.++|..|+..+-
T Consensus 49 ~te~~L~~~F----~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~ln 94 (121)
T 2bz2_A 49 MTPTLLRGAF----SPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELN 94 (121)
T ss_dssp CCHHHHHHHH----STTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCHHHHHHHH----HccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhC
Confidence 3344566777 578888888773 455789999999999999998754
No 140
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.56 E-value=19 Score=27.56 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=36.6
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--||..+| ..+|-|..+.+...+. -..+.++++.|.+.++|..++.
T Consensus 19 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 19 PHNCGETELREYF----KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CSSCCHHHHHHHH----SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 4444555677777 4578888877755443 2346789999999999999986
No 141
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=39.34 E-value=10 Score=29.68 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 105 FSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 105 ~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
-+|..+| +.+|-|+.+.+. ...-..+.++++.|.+.++|..|+..+
T Consensus 36 ~~l~~~F----~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 36 NVIHKIF----SKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNA 81 (105)
T ss_dssp HHHHHHH----GGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHC
T ss_pred HHHHHHH----hcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3477777 467888887665 222244678999999999999999874
No 142
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.23 E-value=17 Score=29.65 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=38.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|+.+.|.- .+.++++.|.+.++|..|+..+-
T Consensus 39 Lp~~vte~dL~~lF----~~fG~V~~v~i~~-----~kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 39 LPIDVTEGEVISLG----LPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CCTTCCHHHHHHHH----TTTSCCCEEEEEG-----GGTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhc
Confidence 34445556788888 5788898887632 36789999999999999998765
No 143
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=39.23 E-value=17 Score=28.43 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+...+. -....++++.|.+.++|..++..+-
T Consensus 34 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 34 IHEEAQEDEIQEKF----CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 44455666788888 4678888877644432 2345789999999999999998753
No 144
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.92 E-value=12 Score=28.96 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|+.+.+...+. ...+.++++.|.+.++|..|+..+-
T Consensus 20 Lp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 20 LAEEVDDKVLHAAF----IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCSSCCHHHHHHHH----TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHh----hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34445556777777 4578888876644432 2346689999999999999998753
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.55 E-value=18 Score=28.19 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCCCCCCCCccccccccCccceeeee-eEEEeeecCcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITK-VVLKIRPQPRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe-~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| ..+|.|.. +.|...+.-..+.++++.|.+.++|..|+..
T Consensus 23 Lp~~~te~~l~~~F----~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 23 LPFGCSKEEIVQFF----SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCTTCCHHHHHHHT----TTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 44455556788888 46788876 5554443334567899999999999998874
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=38.35 E-value=23 Score=29.49 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|..+.+...+ ....+..+++.|.+.++|..++..+-
T Consensus 11 p~~~~~~~l~~~f----~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 11 PQNMTQEEFRSLF----GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 3344445667777 457788888776655 34556789999999999999998753
No 147
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=38.32 E-value=10 Score=39.52 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 468 VSQVGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 468 ~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
|| ..++-+++||+.+||+|+|+-..-|+|
T Consensus 495 yg-~n~~RL~~iK~kyDP~~vF~~~qsI~p 523 (523)
T 2wdx_A 495 YK-GNHPRLRKVKAAYDPRNHFHHALSIRP 523 (523)
T ss_dssp HG-GGHHHHHHHHHHHCTTCCSCCTTCCCC
T ss_pred HH-HHHHHHHHHHHHhCcHhhcCCCCCCCC
Confidence 45 459999999999999999986555543
No 148
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=37.90 E-value=13 Score=30.09 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=38.8
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|+.+.|...+. -....++++.|.+.++|..|+..|-
T Consensus 31 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 31 HEEATEEDIHDKF----AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4444555677888 3678888877765542 2345688999999999999998754
No 149
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.84 E-value=16 Score=28.52 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecC-cceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP-RCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P-~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--+|..+| ..+|-|..+.+...+.. ..+.++++.|.+.++|..++..+
T Consensus 23 Lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 23 LSFDSEEEALGEVL----QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 34444555677778 46777877776554432 34678999999999999999875
No 150
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=37.72 E-value=13 Score=28.69 Aligned_cols=54 Identities=6% Similarity=0.022 Sum_probs=37.8
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecC---cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP---RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P---~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|+-..+++..-+ ..+.++++.|.+.++|.+++..+-
T Consensus 18 ~~~~tee~L~~~F----~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 18 APHTVVDSIMTAL----SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp CTTCCHHHHHHHS----TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHH----HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 3344445677777 46776555566665433 345689999999999999999865
No 151
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=37.17 E-value=12 Score=26.92 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--||..+| +.+|-|..+.+...+. ...+..+++.|.+.++|..++.
T Consensus 8 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 8 SVNTTVEDVKHYF----EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CSSCCHHHHHHHH----HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CCCCCHHHHHHHH----HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3344445677777 3567788877665542 3456789999999998877654
No 152
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.10 E-value=16 Score=27.60 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|+.+.+. +.++++.|.+.++|..++..+-
T Consensus 19 p~~~t~~~l~~~F----~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 19 SPTCTNQELRAKF----EEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp CSSCCHHHHHHHH----HTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhC
Confidence 4444555677777 357778887764 2388899999999999998753
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=36.88 E-value=14 Score=28.99 Aligned_cols=55 Identities=7% Similarity=-0.127 Sum_probs=38.0
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
++.+.+--||..+|- .-|..|-|+.+.|...+.-..+.++++.|.+.++|..|+.
T Consensus 19 Lp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 19 LPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp CCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 344555667777773 2233333888887665554566789999999999998887
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.74 E-value=14 Score=29.36 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=36.2
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| +.+|-|+.+.|. ..+.++++.|.+.++|..|+..|-
T Consensus 19 p~~~te~~L~~~F----~~~G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 19 PAGTLAAEIQETF----SRFGSLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhC
Confidence 4444555778888 467888776542 345679999999999999999864
No 155
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=36.70 E-value=12 Score=28.97 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=35.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| ..+|-|..+.+. +.++++.|.+.++|..++..|-
T Consensus 19 l~~~~t~~~l~~~F----~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~ 66 (103)
T 2dgu_A 19 LANTVTEEILEKAF----SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp CCTTCCHHHHHHHH----HHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHC
Confidence 34445556777888 467888887653 2388899999999999998754
No 156
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.50 E-value=17 Score=27.81 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=36.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|..+.+. ..+.++++.|.+.++|..++..+-
T Consensus 23 lp~~~t~~~l~~~F----~~~G~i~~v~~~-----~~kg~afV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 23 LPPDITEEEMRKLF----EKYGKAGEVFIH-----KDKGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp CCTTCCHHHHHHHT----STTCCCSEEEEE-----TTTTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----hhcCCeEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhC
Confidence 34445555677777 457778777664 235789999999999999998754
No 157
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.35 E-value=9.8 Score=30.31 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=39.1
Q ss_pred CCCCCCCCCccccccccCccceee-eeeEEEeeecCcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVI-TKVVLKIRPQPRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGII-Te~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| ..+|+| ..+.|...+.-..+.++++.|.+.++|..|+..
T Consensus 23 Lp~~~t~~~l~~~F----~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 23 IPFSITKMDVLQFL----EGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CCTTSCHHHHHHHT----TTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred cCCcCCHHHHHHHH----HhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 44455556788888 457888 777776655444567899999999999888753
No 158
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=36.11 E-value=31 Score=29.36 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.|..-+. .....++++.|.+.++|..|+..|-
T Consensus 80 Lp~~~t~~~L~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 135 (165)
T 1rk8_A 80 IHEEAQEDEIQEKF----CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135 (165)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHh----hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC
Confidence 34444555677777 4678898888866543 2346789999999999999998753
No 159
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.08 E-value=18 Score=27.54 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=37.2
Q ss_pred CCCCCCCCCccccccccCccceeee-eeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVIT-KVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIIT-e~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--+|..+| ..+|-|. .+.+...+. -..+.++++.|.+.++|..|+..+
T Consensus 17 Lp~~~t~~~l~~~F----~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 17 LEPYMDENFISRAF----ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp CCTTCCHHHHHHHH----HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 34445555677777 3567776 776655442 245578899999999999998764
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=35.96 E-value=28 Score=30.12 Aligned_cols=62 Identities=8% Similarity=0.000 Sum_probs=42.6
Q ss_pred CCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHHHcCC----CccEEEeech
Q psy4699 102 DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRC----QPSSIRLVDN 170 (500)
Q Consensus 102 ~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~~~~~----~p~a~el~d~ 170 (500)
.+--+|..+| +.+|-|.++.+. .. ..+.+.++.|.|.++|.+|+..|-...+ .+-.+++.-.
T Consensus 58 vted~L~~~F----s~fG~V~~V~i~--~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 58 VTLDVLHQIF----SKFGTVLKIITF--TK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCHHHHHHHH----HHHSCEEEEEEE--ES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CCHHHHHHHH----HhcCCEEEEEEE--eC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3445678888 588999998873 22 2346789999999999999998653333 3344554433
No 161
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=35.85 E-value=12 Score=38.97 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 468 VSQVGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 468 ~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
||+ .++-+++||+.+||+|+|+-..-|+|
T Consensus 499 yg~-n~~RL~~iK~kyDP~nvF~~~q~I~p 527 (530)
T 2y3s_A 499 YKD-AYPRLQAVKARWDPRNVFRHALSVRV 527 (530)
T ss_dssp HGG-GHHHHHHHHHHHCTTCCSCCTTCCCC
T ss_pred HHH-HHHHHHHHHHHhCchhhcCCCCCCCC
Confidence 554 58999999999999999986655554
No 162
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=35.71 E-value=30 Score=32.12 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=36.5
Q ss_pred CccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 106 SEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 106 dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
||..+| +.+|-|+.+.+...+....+..+++.|.+.++|..|+..|-
T Consensus 201 ~l~~~f----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 201 ALCRAL----SAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp HHHHHT----CSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred HHHHHh----hCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 344555 46788999887766655567899999999999999998853
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=35.52 E-value=51 Score=27.39 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=37.1
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--+|..+| +.+|-|+.+.+...+ .-..+..+++.|.+.++|..++..|-
T Consensus 100 ~~t~~~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 100 TITDDQLDTIF----GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp TCCHHHHHHHH----TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHhh----hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 33444667777 467888887765443 22345688999999999999999864
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=34.85 E-value=22 Score=29.56 Aligned_cols=52 Identities=8% Similarity=-0.089 Sum_probs=39.8
Q ss_pred CCCCCCCCCccccccccCcccee---eeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGV---ITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGI---ITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
++.+.+--||..+| ..+|. |+.+.|...+.-..+.+.++.|.+.++|..|+.
T Consensus 52 Lp~~~te~dL~~~F----~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 52 LPWSCSVEDVQNFL----SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp CCTTCCHHHHHHHT----TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 45556666788888 34676 888888776665567799999999999998887
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=34.83 E-value=11 Score=33.01 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=40.8
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++...+--||..+| ..+|-|+.+.+...+.-....++++.|.+.++|..|+..+-
T Consensus 96 Lp~~~te~~L~~~F----~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 96 LDFGVSDADIQELF----AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp CCSCCCHHHHHHHH----HHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 34445556777888 35788888888666544556789999999999999998753
No 166
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.78 E-value=24 Score=27.14 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=36.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+|- .+| |+.+.+...+. -..+.++++.|.+.++|..++ ++
T Consensus 23 Lp~~~t~~~l~~~F~----~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l 75 (103)
T 2dng_A 23 LPFNTVQGDIDAIFK----DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY 75 (103)
T ss_dssp CCTTCCHHHHHHHTT----TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG
T ss_pred CCCCCCHHHHHHHHH----hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh
Confidence 344555567788883 347 77777765543 244668999999999999998 64
No 167
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=34.74 E-value=32 Score=31.72 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=39.7
Q ss_pred CCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 102 DQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 102 ~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
.+--+|..+| +.+|-|+.+.+..-+.-..+..+++.|.+.++|..|+..+-
T Consensus 108 ~t~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 108 VSNELLEQAF----SQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp CCHHHHHHHH----GGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----HhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhc
Confidence 3334566777 47889999888776555567889999999999999999873
No 168
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.58 E-value=16 Score=28.61 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=36.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+... +.++++.|.+.++|..|+..|-
T Consensus 33 l~~~~t~~~l~~~F----~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~ 82 (109)
T 1x4g_A 33 IASGLTDQLMRQTF----SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVN 82 (109)
T ss_dssp CSSCCCHHHHHHHH----HHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcC
Confidence 34445556777888 46777887766432 5789999999999999998753
No 169
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.53 E-value=16 Score=27.79 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=36.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||.++| ..+|-|+.+.+.. .+.++++.|.+.++|..|+..+-
T Consensus 25 lp~~~t~~~l~~~F----~~~G~v~~v~~~~-----~~g~afV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 25 LGPNTSLAALAREF----DRFGSIRTIDHVK-----GDSFAYIQYESLDAAQAACAKMR 74 (97)
T ss_dssp CCSSCCHHHHHHHH----HTTSCEEEEEECS-----SSCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCeeEEEEeC-----CCCEEEEEECCHHHHHHHHHHHC
Confidence 34445556777878 4778888876642 25688999999999999998754
No 170
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=34.18 E-value=49 Score=34.00 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 471 VGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 471 ~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
..++.+++||+.+||+|+|+-.--|+|
T Consensus 467 ~n~~RL~~vK~~yDP~n~F~~~qsI~p 493 (495)
T 3fw9_A 467 SNYERLIRAKTLIDPNNVFNHPQSIPP 493 (495)
T ss_dssp GGHHHHHHHHHHHCTTCCSCCTTCCCC
T ss_pred hHHHHHHHHHHhhCcHhhCCCCCCCCC
Confidence 468999999999999999985544554
No 171
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.06 E-value=26 Score=27.05 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| ..+|-|+.+.+...+. -..+.++++.|.+.++|..++..
T Consensus 24 lp~~~t~~~l~~~F----~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 24 LDWSTTQETLRSYF----SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CCTTCCHHHHHHHH----HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34445556777888 4578898888766543 24556889999999999988874
No 172
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.04 E-value=18 Score=28.33 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=35.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| ..+|-|+.+.+... .++++.|.+.++|..|+..|
T Consensus 23 Lp~~~t~~~l~~~F----~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 23 LPPSGSWQDLKDHM----REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCSSCCHHHHHHHH----GGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHH
Confidence 34445556777777 45777888776432 78899999999999999874
No 173
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=33.93 E-value=5.9 Score=30.32 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=36.7
Q ss_pred CCCCCCCCCccccccccCccce-eeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLG-VITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLG-IITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+=-||..+| +.+| .|+.+.|-.-+. ...+.++++.|.+.++|..|+..+
T Consensus 9 Lp~~~te~~l~~~F----~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 9 LPQAATEDDIRGQL----QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCSSCCHHHHHHHH----HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 34444555777777 4567 577766533332 345678999999999999998753
No 174
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.54 E-value=19 Score=28.36 Aligned_cols=54 Identities=4% Similarity=-0.021 Sum_probs=37.0
Q ss_pred CCCCCCCCccccccccCccceeee--------eeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVIT--------KVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIIT--------e~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|.|. .+.+...+. -..+.++++.|.+.++|..|+..|-
T Consensus 24 p~~~t~~~l~~~F----~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 24 NDSVTLDDLADFF----KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CTTCCHHHHHHHH----TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 4444555777777 4577777 455544432 2345689999999999999998753
No 175
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.51 E-value=12 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCCCCCCCccccccccCccceeeeee-EEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKV-VLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~-tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--||..+| ..+|-|..+ .+...+. ...+.++++.|.+.++|..++..+
T Consensus 14 p~~~t~~~l~~~F----~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 14 DPEIDEKLLYDTF----SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 68 (96)
T ss_dssp CTTCCHHHHHHHH----HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHH----HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 3344445677777 357778877 6654422 334568999999999999998864
No 176
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.37 E-value=16 Score=27.47 Aligned_cols=47 Identities=2% Similarity=0.012 Sum_probs=34.5
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|+.+.+. +.++++.|.+.++|..++..+-
T Consensus 18 p~~~t~~~l~~~F----~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 18 SAACTSQELRSLF----ERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp CTTCCHHHHHHHH----HHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhC
Confidence 3344555677777 467888887764 2388899999999999998754
No 177
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=33.03 E-value=14 Score=38.25 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCCCCCccC
Q psy4699 467 HVSQVGLELYRSTKQALDPNNVFASGNLLL 496 (500)
Q Consensus 467 ~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~ 496 (500)
.|| ..++-+++||+.+||+|+|+-.--|+
T Consensus 472 Yyg-~N~~RL~~vK~kyDP~n~F~~~qsI~ 500 (501)
T 3pop_A 472 YYK-DNYARLRSAKRAWDPLNTFHHSMSIG 500 (501)
T ss_dssp HHG-GGHHHHHHHHHHHCTTCCSCCTTCCC
T ss_pred HhH-hHHHHHHHHHHHhCcccccCCCCCCC
Confidence 355 47899999999999999997544443
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=32.64 E-value=29 Score=28.64 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=36.9
Q ss_pred CCCCCCCCccccccccCccceeeeee------EEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKV------VLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~------tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| +.+|-|+.+ .+++...-..+.++++.|.+.++|..|+..+-
T Consensus 54 p~~~te~~L~~~F----~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 54 AKHVQEKDLKYIF----GRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CTTCCHHHHHHHH----GGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 3344445677777 456766653 23333444567899999999999999998753
No 179
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=32.57 E-value=19 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| +.+|-|..+.+...+. -..+.++++.|.+.++|..++..
T Consensus 33 Lp~~~te~~L~~~F----~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 33 LSWQTTQEGLREYF----GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp CCTTCCHHHHHHHH----TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 34455556788888 4678888887765443 23456889999999999988874
No 180
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=32.10 E-value=19 Score=28.63 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||.++| ..+|-|..+.+...+. -..+.++++.|.+.++|..++..+
T Consensus 48 lp~~~t~~~l~~~F----~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 48 LPQEFTDTDLASTF----LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp SCTTCCHHHHHHHT----TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 44555566788888 4678888887765543 244678999999999999998864
No 181
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.84 E-value=19 Score=29.44 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=39.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--+|..+| +.+|-|+.+.+...+. ...+.++++.|.+.++|..++..+
T Consensus 71 lp~~~~~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 71 LAEEVDDKVLHAAF----IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 45555566788888 4678888876654432 245678999999999999998864
No 182
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=31.66 E-value=22 Score=26.72 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=34.5
Q ss_pred CCCCCCccccccccCccce--eeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLG--VITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLG--IITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--||..+| +.+| -|.++.+...+. -..+.++++.|.+.++|..|+..+-
T Consensus 12 ~~t~~~l~~~F----~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 12 WTTDEDLTEAV----HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp TCCHHHHHHHH----HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred CCCHHHHHHHH----HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC
Confidence 33444567777 4567 566666655442 2456688999999999999998753
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=31.52 E-value=35 Score=30.08 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=39.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--+|..+| +.+|-|+.+.+...+....+.++++.|.+.++|..|+..
T Consensus 117 Lp~~~t~~~L~~~F----~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 117 FPTDATLDDIKEWL----EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp CCTTCCHHHHHHHH----TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHH----hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 34444555677888 567889998887655555678999999999999988853
No 184
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.28 E-value=19 Score=26.53 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=35.1
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--+|..+| ..+|-|..+.+.- .+..+++.|.+.++|..++..+
T Consensus 21 ~~~~t~~~l~~~f----~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 21 GDTITETDLRNHF----YQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp TTTSCHHHHHHHH----HTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHH----HhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHh
Confidence 4444555677777 3567788776652 3578999999999999998864
No 185
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=30.98 E-value=27 Score=29.07 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|..+.+... .+.++++.|.+.++|..++..+-
T Consensus 81 l~~~~t~~~l~~~F----~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~ 131 (150)
T 2i2y_A 81 LGNNGNKTELERAF----GYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELD 131 (150)
T ss_dssp CCSCCSCHHHHHHH----HHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcC
Confidence 45556667788888 46788888776432 35789999999999999998753
No 186
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=30.55 E-value=29 Score=35.52 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=23.8
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 466 EHVSQVGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 466 ~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
..|| ..++-+++||+.+||+|+|+-.--|+|
T Consensus 441 ~yyg-~n~~RL~~vK~kyDP~n~F~~~qsI~p 471 (473)
T 3rja_A 441 VYYG-ENLARLQKLKAKFDPTDRFYYPQAVRP 471 (473)
T ss_dssp HHHG-GGHHHHHHHHHHHCTTCTTCCTTSCCC
T ss_pred HHHH-HHHHHHHHHhhccCchhhCCCCcCCCC
Confidence 3455 468999999999999999975544544
No 187
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=30.36 E-value=1.3e+02 Score=26.59 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=43.1
Q ss_pred ccceeeeeeEEEeeecC-----cceeEEEEEcCCHHHHHHHHHHHHHcC--CCccEEEeechHhHh
Q psy4699 116 GTLGVITKVVLKIRPQP-----RCQKFGSILFPNFEAGVKCLREIAKKR--CQPSSIRLVDNVQLK 174 (500)
Q Consensus 116 GTLGIITe~tlkl~p~P-----~~~~~~~~~f~~~~~a~~~~~~l~~~~--~~p~a~el~d~~~~~ 174 (500)
+.+|-|..+.+..-+.. ..+..+++.|.+.++|..++..|-... -++..+++++....+
T Consensus 151 ~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 151 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 47788988887543333 456788899999999999999976432 366777888776544
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=30.15 E-value=44 Score=27.69 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=36.9
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--+|..+| ..+|-|..+.+...+. ...+..+++.|.+.++|..|+..|-
T Consensus 99 ~~t~~~l~~~f----~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 99 TMTQKELEQLF----SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp TCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH----HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 33444666777 4678888877654432 2346788999999999999999864
No 189
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=29.68 E-value=16 Score=28.20 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=38.0
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--+|..+| +.+|-|..+.+...+.-..+.++++.|.+.++|..++.
T Consensus 18 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 18 DVRMDETEIRSFF----ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CTTCCHHHHHHHH----GGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCCHHHHHHHH----HhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 4444555677777 56788888887766544566789999999999888876
No 190
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=29.65 E-value=2.3e+02 Score=29.35 Aligned_cols=25 Identities=4% Similarity=-0.013 Sum_probs=20.2
Q ss_pred ceeeee--eccchHHHHHHHHHHHHHH
Q psy4699 273 SFETSV--PWDKTVLLCINVKKRLTQE 297 (500)
Q Consensus 273 ~~d~~v--p~~~~~~~~~~~~~~~~~~ 297 (500)
..+++| |.++..++++++.+.+.+.
T Consensus 380 ~~e~av~~P~~~~~~~l~~l~~~i~~~ 406 (561)
T 2i0k_A 380 EGGGAVVTSRANIATVINDFTEWFHER 406 (561)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHHHHHhc
Confidence 457999 9999999999887766543
No 191
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.53 E-value=25 Score=27.78 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| ..+|-|..+.|...+. -..+.++++.|.+.++|..|+..
T Consensus 25 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 25 LPYHTTDASLRKYF----EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp CCSSCCHHHHHHHH----HTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHH----HhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 34455556778888 4677888877755443 23456899999999999988875
No 192
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=29.46 E-value=46 Score=29.46 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=36.0
Q ss_pred CCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 103 QAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 103 ~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+=-+|..+| ..+|-|+.+.|-..+. ..+.++++.|.+.++|..|+..|-
T Consensus 116 t~~~l~~~F----~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 116 DNKALYDTF----SAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp CHHHHHHHH----GGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHH----hhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhC
Confidence 334566666 4688898887754432 356788999999999999998853
No 193
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=29.25 E-value=25 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=30.0
Q ss_pred ccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 116 GTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+|-|+++.+.- -...+.++++.|.+.++|..|+..+-
T Consensus 55 ~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~ln 93 (127)
T 2a3j_A 55 SSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQ 93 (127)
T ss_dssp HHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHST
T ss_pred ccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHC
Confidence 5788888876642 23456789999999999999998753
No 194
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.09 E-value=19 Score=27.23 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=34.7
Q ss_pred CCCCCCCCccccccccCccceeeeeeE-EEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVV-LKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~t-lkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| +.+|-|+.+. +...+. . ..+++.|.+.++|..++..+-
T Consensus 24 p~~~t~~~l~~~F----~~~G~v~~~~~i~~~~~--~-~~afV~f~~~~~a~~Ai~~l~ 75 (96)
T 2e44_A 24 PPHLQWEVLDSLL----VQYGVVESCEQVNTDSE--T-AVVNVTYSSKDQARQALDKLN 75 (96)
T ss_dssp CSSSCHHHHHHHH----HHHSCEEEEEEECCSSS--S-EEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEeecCCC--C-CEEEEEECCHHHHHHHHHHhC
Confidence 4445556777888 4678888763 433322 2 228899999999999998754
No 195
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=28.79 E-value=13 Score=27.82 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=35.6
Q ss_pred CCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 100 NEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 100 k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
.+.+--||..+| +.+|-|..+.+...+. ...+.++++.|.+.+ |.+++..+
T Consensus 11 ~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l 62 (90)
T 2ki2_A 11 YSATSEQVKELF----SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL 62 (90)
T ss_dssp TTSSHHHHTTTH----HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS
T ss_pred CCCCHHHHHHHH----HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh
Confidence 334445667777 3577888877755543 345678999999999 88888763
No 196
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=28.47 E-value=53 Score=28.70 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecC-cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP-RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P-~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|+.+.+...+.. ..+..+++.|.+.++|..|+..|-
T Consensus 134 p~~~t~~~l~~~f----~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 134 HQDLSDDDIKSVF----EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp CTTCCHHHHHHHH----TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHH----hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 3334444667777 46788988877655432 346688999999999999999864
No 197
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.37 E-value=32 Score=27.10 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--+|..+| ..+|-|+.+.+...+. -..+.++++.|.+.++|..++..
T Consensus 35 Lp~~~te~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 35 LSFETTEESLRNYY----EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp CTTCCCHHHHHHHH----TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 44455566788888 4678888887765543 23456899999999999888764
No 198
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=27.72 E-value=10 Score=27.32 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--||..+| +.+|-|..+.+...+. ...+..+++.|.+.++|..++.
T Consensus 8 p~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 8 SPDTPEEKIREYF----GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CSSCCHHHHHHHH----HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 3344445677777 3577888877655443 3446788999999999988876
No 199
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=27.06 E-value=25 Score=36.49 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=24.5
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCCCCCCCccCC
Q psy4699 463 WYPEHVSQVGLELYRSTKQALDPNNVFASGNLLLP 497 (500)
Q Consensus 463 ~~~~~~~~~~~~~~~~iK~~~DP~~ilnpgk~~~~ 497 (500)
|-...|| ..++-+++||+.+||+|+|+-.--|+|
T Consensus 479 w~~~Yyg-~N~~RL~~vK~~yDP~n~F~~~QsI~p 512 (518)
T 3vte_A 479 WGEKYFG-KNFNRLVKVKTKVDPNNFFRNEQSIPP 512 (518)
T ss_dssp HHHHHSS-THHHHHHHHHHHHCTTCCSCCTTCCCC
T ss_pred HHHHHhH-hHHHHHHHHHhhcCchhcccCCCCCCC
Confidence 3334455 578999999999999999974433433
No 200
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.77 E-value=49 Score=27.34 Aligned_cols=54 Identities=6% Similarity=-0.004 Sum_probs=38.9
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| +.+|-|..+.+...+. ...+..+++.|.+.++|..|+..+-
T Consensus 96 ~~~~t~~~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 96 NVNVDDETLRNAF----KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CTTCCHHHHHHHH----TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 3344445677777 4678888887765543 2445688999999999999998753
No 201
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.64 E-value=32 Score=26.17 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+|-. -|. |-|..+.+. +.++++.|.+.++|..|+..+-
T Consensus 24 p~~~t~~~l~~~F~~-~g~-g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 24 MLSTSEEMIEKEFNN-IKP-GAVERVKKI-------RDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp CTTCCHHHHHHHHHT-TST-TCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHh-cCC-cceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhC
Confidence 334444567777722 222 778776542 3588999999999999998753
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=26.26 E-value=36 Score=28.55 Aligned_cols=52 Identities=4% Similarity=-0.015 Sum_probs=37.2
Q ss_pred CCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+--||..+| ..+|-|+.+.+...+ ....+..+++.|.+.++|..++..+-
T Consensus 105 ~~t~~~l~~~f----~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (172)
T 2g4b_A 105 YLNDDQVKELL----TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp TCCHHHHHHHH----HTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT
T ss_pred cCCHHHHHHHH----HhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 33444566777 357888887776554 23446789999999999999998753
No 203
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=25.76 E-value=35 Score=34.47 Aligned_cols=55 Identities=5% Similarity=0.041 Sum_probs=40.2
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| +.+|-|+.+.|-.-+. .....+++|.|.+.++|..|+..|-
T Consensus 110 L~~~~te~~L~~~F----~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 110 VNYDTTESKLRREF----EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CCCCCCHHHHHHHH----HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 34444555777888 4688999988765543 2346789999999999999998753
No 204
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=25.71 E-value=21 Score=30.00 Aligned_cols=55 Identities=7% Similarity=0.053 Sum_probs=40.3
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| +.+|-|+.+.+..-+. ...+.++++.|.+.++|..|+..|-
T Consensus 78 l~~~~~~~~l~~~F----~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 133 (158)
T 2kn4_A 78 LTYRTSPDTLRRVF----EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 133 (158)
T ss_dssp CCTTCCHHHHHHHH----HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred CCCCCCHHHHHHHH----HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 45555666788888 4778888877655432 3456789999999999999998753
No 205
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.53 E-value=18 Score=28.66 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec----CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ----PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~----P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+.+--+|..+| +.+|-|. +.+...+. -..+.++++.|.+.++|..|+..+
T Consensus 17 p~~~te~~L~~~F----~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 17 PPDIDEDEITASF----RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CTTCCHHHHHHHT----TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHH----HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3444555677777 4567776 33322222 144678999999999999998874
No 206
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=25.44 E-value=35 Score=30.32 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=37.1
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecC-cceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP-RCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P-~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||..+| ..+|-|+...+++.+.. ......++.|.+.++|..|+..|-
T Consensus 132 p~~~t~~~L~~~F----~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ln 186 (205)
T 3tyt_A 132 PLEVTEENFFEIC----DELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLN 186 (205)
T ss_dssp CTTCCHHHHHHHH----HHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 3344445678888 46787743445555432 334789999999999999999854
No 207
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=24.13 E-value=56 Score=28.00 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=38.9
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLRE 154 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~ 154 (500)
++.+.+--||..+| ..+|-|..+.+...+. ...+.++++.|.+.++|..|+..
T Consensus 21 Lp~~~te~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 21 LSFETTDESLRSHF----EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 34455556777777 4678898888766554 23567899999999999998863
No 208
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.05 E-value=31 Score=27.64 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=36.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEE-EeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVL-KIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tl-kl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
++.+.+--||..+| ..+|.|..+.+ .-.+.-..+.++++.|.+.++|..|+.
T Consensus 33 Lp~~~te~~l~~~F----~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 33 LPFEAENKHVIDFF----KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCTTCCHHHHHHHS----CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 44455556788888 46788877433 333333456789999999999988886
No 209
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.01 E-value=46 Score=29.13 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=39.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+=-+|..+| ..+|-|..+.+...+ .-..+.++++.|.+.++|..++..+-
T Consensus 36 Lp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 91 (216)
T 2qfj_A 36 IYYELGEDTIRQAF----APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 91 (216)
T ss_dssp CCTTCCHHHHHHHH----GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc
Confidence 44445555777888 467889888875544 23456789999999999999998753
No 210
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=23.94 E-value=43 Score=29.74 Aligned_cols=46 Identities=9% Similarity=-0.049 Sum_probs=34.9
Q ss_pred CCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 103 QAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 103 ~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+--+|..+| +.+|-|+++.+- + ..+.++++.|.+.++|..|+..|-
T Consensus 18 ~~~~L~~~F----~~~G~v~~v~i~--~--~~~g~afV~f~~~~~A~~Ai~~ln 63 (205)
T 3tyt_A 18 NCDRVFNVF----CLYGNVEKVKFM--K--SKPGAAMVEMADGYAVDRAITHLN 63 (205)
T ss_dssp CHHHHHHHH----TTTSCEEEEEEC--T--TSTTCEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHH----HhcCCeEEEEEe--c--CCCCEEEEEECCHHHHHHHHHHhC
Confidence 334677888 578889887662 2 235789999999999999999864
No 211
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.88 E-value=60 Score=24.05 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=34.8
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
++.+.+--||..+|-. + -|..+.+...+.-..+.++++.|.+.++|..++.
T Consensus 18 Lp~~~t~~~l~~~F~~----~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAP----L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCSSCCHHHHHHHHTT----S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhh----C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 3444555677777733 3 3566666554444556789999999999999887
No 212
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=23.57 E-value=48 Score=24.88 Aligned_cols=50 Identities=14% Similarity=-0.057 Sum_probs=33.7
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+|- .+|-|..+ ...-..+.++++.|.+.++|..++..+
T Consensus 24 L~~~~t~~~l~~~F~----~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l 73 (96)
T 1fjc_A 24 LSFNITEDELKEVFE----DALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEK 73 (96)
T ss_dssp CCSSCCHHHHHHHHC----SEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHh----hCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 344445556777773 35655544 223345678999999999999999874
No 213
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=22.61 E-value=33 Score=27.86 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=38.3
Q ss_pred CCCCCCCCCccccccccCccceeeee--eEEEeee-cCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITK--VVLKIRP-QPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe--~tlkl~p-~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+=-||..+| ..+|-|+. +.|-.-+ ....+.++++.|.+. +|.+++..+-
T Consensus 31 L~~~~te~~L~~~F----~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 31 LNPHSTMDSILGAL----APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp CCTTCCSHHHHHHH----GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH----HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 44455666788888 47888877 4443333 234567899999999 9999998754
No 214
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.49 E-value=59 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=31.0
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLR 153 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~ 153 (500)
+.+.+--||..+| +.+|-|.++ ........ ++++.|.+.++|..++.
T Consensus 17 ~~~~t~~~l~~~F----~~~G~v~~v---~~~~~~g~-~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 17 PRGVDSAQLSEYF----LAFGPVASV---VMDKDKGV-FAIVEMGDVGAREAVLS 63 (94)
T ss_dssp CTTCCHHHHHHHG----GGTSCEEEE---EECSSSCC-EEEEEESSHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeEEE---EEcCCCCc-EEEEEECCHHHHHHHHh
Confidence 3344445677777 467778875 22222222 88999999999888887
No 215
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=21.86 E-value=79 Score=24.98 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| +.+|-|..+.+...+. -..+.++++.|.+.++|..++ ++
T Consensus 44 lp~~~t~~~l~~~F----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l 97 (124)
T 2jwn_A 44 VDYGSTAQDLEAHF----SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AM 97 (124)
T ss_dssp ECTTCCHHHHHHHH----HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TT
T ss_pred CCCCCCHHHHHHHH----HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hc
Confidence 34455556788888 4678888887766542 344678999999999999988 54
No 216
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=21.80 E-value=19 Score=27.28 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCCCCCCCcc----ccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEH----AQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~----~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--||. .+| +.+|-|..+.+. .....+.++++.|.+.++|..++..+-
T Consensus 17 p~~~~~~~l~~~l~~~f----~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 17 NEKIKKDELKKSLHAIF----SRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp CTTSCHHHHHHHHHHHH----GGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH----HhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 3334444555 666 467778877654 222345688899999999999998754
No 217
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.66 E-value=18 Score=28.52 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=37.4
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--+|..+| ..+|-|..+.+.+... -..+.++++.|.+.++|..|+..|-
T Consensus 33 Lp~~~t~~~l~~~f----~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 33 LSPRVTERDLVSLF----ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp CCTTCCHHHHHHHT----HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST
T ss_pred CCCCCCHHHHHHHH----HHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 44455556777777 4567776554444332 2445789999999999999998753
No 218
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=37 Score=25.69 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCCCCCCCccccccccCccceeeeeeEEEeeecCcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
++.+.+--||..+| +.+|.|. +.+.. . ....++++.|.+.++|..++..+-
T Consensus 27 L~~~~t~~~l~~~F----~~~G~v~-~~~~~-~--~~~g~afV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 27 LPRDARVSDLKRAL----RELGSVP-LRLTW-Q--GPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp CCTTCCHHHHHHHH----HHTTCCC-SEEEE-E--TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHH----HhcCCEE-EEEEc-C--CCCcEEEEEECCHHHHHHHHHHhC
Confidence 34445556677777 3455553 33222 1 445688999999999999998753
No 219
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=21.23 E-value=49 Score=27.97 Aligned_cols=54 Identities=6% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCCCCCCCCccccccccCccce--eeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHH
Q psy4699 98 HPNEDQAFSEHAQSTVEQGTLG--VITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 98 ~~k~~~G~dl~~LfiGSEGTLG--IITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
++.+.+--||..+| +.+| -|+++.+-.-+. -..+.++++.|.+.++|..|+..|
T Consensus 63 Lp~~~te~~L~~~F----~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l 119 (156)
T 3n9u_C 63 FSWWTTDQQLIQVI----RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL 119 (156)
T ss_dssp CCTTCCHHHHHHHH----HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHH----HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 44455566788888 4678 577766655443 345678999999999999999874
No 220
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.77 E-value=21 Score=27.72 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=33.4
Q ss_pred CCCCCCccccccccCcccee-eeeeEEEeeecC--cceeEEEEEcCCHHHHHHHHHHH
Q psy4699 101 EDQAFSEHAQSTVEQGTLGV-ITKVVLKIRPQP--RCQKFGSILFPNFEAGVKCLREI 155 (500)
Q Consensus 101 ~~~G~dl~~LfiGSEGTLGI-ITe~tlkl~p~P--~~~~~~~~~f~~~~~a~~~~~~l 155 (500)
+.+--+|..+| ..+|- |..+.+.-.+.. ..+.++++.|.+.++|..++..+
T Consensus 19 ~~t~~~l~~~f----~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 19 MKKREEILEEI----AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp TSCHHHHHHHH----HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred cCCHHHHHHHH----HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 33444566666 35665 777755312221 45679999999999999998864
No 221
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=20.35 E-value=44 Score=27.79 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=37.6
Q ss_pred CCCCCCCCccccccccCccceeeeeeEEEeeec-CcceeEEEEEcCCHHHHHHHHHHHH
Q psy4699 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQ-PRCQKFGSILFPNFEAGVKCLREIA 156 (500)
Q Consensus 99 ~k~~~G~dl~~LfiGSEGTLGIITe~tlkl~p~-P~~~~~~~~~f~~~~~a~~~~~~l~ 156 (500)
+.+.+--+|..+| ..+|-|..+.+...+. ...+..+++.|.+.++|..++..+-
T Consensus 12 p~~~~~~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 12 PQDMTDRELYALF----RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CTTCCHHHHHHHH----HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH----HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 3344444677777 4577788777655442 3355689999999999999998753
Done!