RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4699
(500 letters)
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain.
This domain has a ferredoxin-like fold.
Length = 247
Score = 150 bits (380), Expect = 4e-42
Identities = 67/280 (23%), Positives = 100/280 (35%), Gaps = 45/280 (16%)
Query: 132 PRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTD 191
P + FP+FEA +R + + P+++ L+D L
Sbjct: 2 PEAVAVAVVGFPSFEAAAAAVRALRQSGIGPAALELMDKAALDLV--------------- 46
Query: 192 GLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAG-------- 243
T LG D A V FEG+ E+V E ++ G AG
Sbjct: 47 -----LGTLGLGLPRDAPAALLVEFEGNDEEV-VEERLEAAVEAILEGAGAGDVVVAEDE 100
Query: 244 ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSI 303
R Y + +RD + + + SVPW + L ++K+ L
Sbjct: 101 AERERLWRARKYAMP-LRDALGGAGPLVFTEDVSVPWSRLPDLVADIKELLA-------- 151
Query: 304 KFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCAR--DEIIACGGSLSHH 361
K+ C D +Y F D ++P++ D A GGS+S
Sbjct: 152 KYGLVICHFGHVGDGNLHLYILF-----DAKDPEEEERAEALFDELADLAAALGGSISGE 206
Query: 362 HGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
HGVG+ + + E GL L R K A DPNN+ GK
Sbjct: 207 HGVGRDKKPYLEEEFGPEGLALMRRIKAAFDPNNILNPGK 246
Score = 67.8 bits (166), Expect = 7e-13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 436 KTLKAVVDSAVS--GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGN 493
+ D A + GS+S HGVG+ + + E GL L R K A DPNN+ G
Sbjct: 187 ALFDELADLAAALGGSISGEHGVGRDKKPYLEEEFGPEGLALMRRIKAAFDPNNILNPGK 246
Query: 494 L 494
+
Sbjct: 247 V 247
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 83.3 bits (206), Expect = 5e-17
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 11 TKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATG 62
++ ADKNDK VKDL LL+ET+LL P+ A+RI+RMIKLGL I++++EV
Sbjct: 445 KRVEADKNDKTVKDLARLLYETALLTSGFSLEDPKAFASRIYRMIKLGLSIDEDEEVEEE 504
Query: 63 DDVKAGDIPVAEGEAEDASRMEE 85
D+ + E + S+MEE
Sbjct: 505 DEEAEVETTEPAEEDAEDSKMEE 527
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD. This protein,
the glycolate oxidase GlcD subunit, is similar in
sequence to that of several D-lactate dehydrogenases,
including that of E. coli. The glycolate oxidase has
been found to have some D-lactate dehydrogenase activity
[Energy metabolism, Other].
Length = 413
Score = 67.5 bits (165), Expect = 5e-12
Identities = 62/298 (20%), Positives = 115/298 (38%), Gaps = 52/298 (17%)
Query: 115 QGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLK 174
+GTLG++T+ LK+ P+P F + E ++ + +I P+ + +DN+ +K
Sbjct: 157 EGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIK 216
Query: 175 AGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA 234
A + ++ GL K D V +G E V+ +E+KI I
Sbjct: 217 AVE---------DISGIGLPK-----------DAGAILLVEIDGVHEAVERDEEKIEQIC 256
Query: 235 KRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 294
++ G + + IA + + + + + L +
Sbjct: 257 RK-----NGAVDVQ--------IAQDEEERALLWAGRRNAFKAASKLSPLYLIEDGTVPR 303
Query: 295 TQECTALS-IKFFETSCRVTQTYDAGSCIYFYFG------FNARDFENPDQTLTYLQHCA 347
++ AL I + + YD + + G D E+ A
Sbjct: 304 SKLPEALRGIA------DIARKYDFTIANFGHAGDGNLHPTILTDPEDKG--EMERVEEA 355
Query: 348 RDEI----IACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
EI I GG++S HG+G +++ + P ++ LE R+ K+A DP+N+ GK
Sbjct: 356 GGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413
Score = 42.5 bits (100), Expect = 4e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 446 VSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASG 492
+ G++S HG+G +++ + P ++ LE R+ K+A DP+N+ G
Sbjct: 366 LGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPG 412
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 66.2 bits (161), Expect = 2e-11
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 17/85 (20%)
Query: 12 KINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATGD 63
++ AD+NDKAVKDLV LLF+TSLL P +A RI+RMIKLGL +++E+E A
Sbjct: 621 RVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA--- 677
Query: 64 DVKAGDIPVAEGEAE---DASRMEE 85
A AE S ME+
Sbjct: 678 ---AEAPVAETAPAEVTAGTSSMEQ 699
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
and conversion].
Length = 459
Score = 62.2 bits (151), Expect = 2e-10
Identities = 56/293 (19%), Positives = 91/293 (31%), Gaps = 36/293 (12%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFE-AGVKCLREIAKKRCQPSSIRLVDNVQLK 174
GTLG+IT+ LK+ P P + FP+ E A + IA
Sbjct: 191 GTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLE--------------- 235
Query: 175 AGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE---GDPEDVKNNEDKIY 231
P LE + D K + G A +L E D V + +
Sbjct: 236 ---ALGVIPAALEFM-DRPIKAAEAYLGGGALPLEAPARLLVEVEGSDEAAVDEALEALG 291
Query: 232 SIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSF---ETSVPWDKTVLLCI 288
+ +G +A A +G + VP +
Sbjct: 292 ELLLEHGLARDLVVAQDLAEAARLWLARKGALAA-AGALGPGVIQEDVVVPLEALPEFLR 350
Query: 289 NVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCAR 348
+ L + AL + F + ++ ++ D L
Sbjct: 351 EILALLDKAGLALRVALF--------GHAGDGNLHLNILYDVGDEAEELARAEALNEAIE 402
Query: 349 DEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
+ GGS+S HG+G+ ++ + L R+ K+A DPN +F GK
Sbjct: 403 ALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGK 454
Score = 46.8 bits (111), Expect = 2e-05
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 424 YPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQAL 483
E + + ++A+ GS+S HG+G+ ++ + L R+ K+A
Sbjct: 387 EAEELARAEALNEAIEALAVEL-GGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAF 444
Query: 484 DPNNVFASG 492
DPN +F G
Sbjct: 445 DPNGIFNPG 453
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 37.3 bits (86), Expect = 0.018
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 441 VVDSAVS--GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASGNLLLP 497
+V +A+S G+ + HGVG + + + + L+ + K+ALDPNN+ G L+ P
Sbjct: 493 MVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551
Score = 33.4 bits (76), Expect = 0.27
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 115 QGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLK 174
+GTLGVIT+V L+++ P+ FP + Q S + L+D VQ++
Sbjct: 291 EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIR 350
Query: 175 A 175
A
Sbjct: 351 A 351
Score = 33.1 bits (75), Expect = 0.36
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 343 LQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
L H ++ G+ + HGVG + + + + L+ + K+ALDPNN+ GK
Sbjct: 489 LNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGK 547
>gnl|CDD|148727 pfam07286, DUF1445, Protein of unknown function (DUF1445). This
family represents a conserved region approximately 150
residues long within a number of hypothetical bacterial
and eukaryotic proteins of unknown function.
Length = 143
Score = 34.4 bits (80), Expect = 0.038
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 13 INADKNDKAVKDLVNLLFETSLLPQVHAARIHRMIKLG----LGIEDEDEVATGDDV--K 66
I AD +AV+ TS P VH A +H +G +GI+D + GD V K
Sbjct: 57 IPADDVIRAVQ-------ITSRFPAVHGAPVH----IGDPALIGIKDLSKPDFGDAVEIK 105
Query: 67 AGDIPV 72
G++PV
Sbjct: 106 PGEVPV 111
>gnl|CDD|180100 PRK05463, PRK05463, hypothetical protein; Provisional.
Length = 262
Score = 35.2 bits (82), Expect = 0.053
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 32 TSLLPQVHAARIHRMIKLG----LGIEDEDEVATGDDV--KAGDIPV 72
TS P VH A +H +G +GI D GD V + G+IPV
Sbjct: 179 TSRFPAVHGAPVH----IGDPAAIGIADLARPDFGDAVEIEPGEIPV 221
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
Length = 499
Score = 34.0 bits (78), Expect = 0.18
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 112 TVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNV 171
T +G LGV+T+V +K+ P+P + F + E + +I P + ++DN+
Sbjct: 211 TGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDNL 270
Query: 172 QLKAGQFF 179
++A + F
Sbjct: 271 SIRAAEDF 278
Score = 30.9 bits (70), Expect = 1.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 352 IACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
+ GGS++ HGVG+ + + + + L+ + K A DP+ + GK
Sbjct: 421 VEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGK 470
>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.
Length = 352
Score = 33.7 bits (78), Expect = 0.19
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 116 GTLGVITKVVLKIRPQPRC 134
GTLGV+ +V LK+ P+PR
Sbjct: 154 GTLGVLLEVSLKVLPRPRA 172
>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase.
Alternate name: phosphoribosylformylglycinamidine
cyclo-ligase; AIRS; AIR synthase This enzyme is found as
a homodimeric monofunctional protein in prokaryotes and
as part of a larger, multifunctional protein, sometimes
with two copies of this enzyme in tandem, in eukaryotes
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 332
Score = 33.1 bits (76), Expect = 0.29
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 31 ETSLLPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVA 73
ET+ +P ++ + + +G+ ++DE+ TG+ VK GD+ +
Sbjct: 135 ETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIG 177
>gnl|CDD|149059 pfam07785, DUF1623, Protein of unknown function (DUF1623). The
members of this family are all derived from relatively
short hypothetical proteins thought to be expressed by
various Nucleopolyhedroviruses.
Length = 90
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 198 VTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY 237
+ F D + VL E + DV+ DKIY+I + Y
Sbjct: 50 IIDESQFDDFKRSDLEVLDEYELSDVELLLDKIYNIVEMY 89
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 30.4 bits (69), Expect = 2.7
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 268 YFIGDSFETSVPWDKTVLLCINVKKRLTQEC 298
+++G SF+ +PW++ C VK EC
Sbjct: 107 FYLGHSFQFPLPWEQ----CPLVKNSSDPEC 133
>gnl|CDD|241412 cd13258, PH_PLEKHJ1, Pleckstrin homology domain containing, family
J member 1 Pleckstrin homology (PH) domain. PLEKHJ1
(also called GNRPX2/Guanine nucleotide-releasing protein
x ). It contains a single PH domain. Very little
information is known about PLEKHJ1. PLEKHJ1 has been
shown to interact with IKBKG (inhibitor of kappa light
polypeptide gene enhancer in B-cells, kinase gamma) and
KRT33B (keratin 33B). PH domains have diverse functions,
but in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 144
Score = 28.6 bits (64), Expect = 3.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 257 IAYIRDFACDYYFIGDSFETSVPW 280
I++I + YYF S E V W
Sbjct: 86 ISFIDEPERKYYFECRSEEQCVEW 109
>gnl|CDD|218620 pfam05511, ATP-synt_F6, Mitochondrial ATP synthase coupling factor
6. Coupling factor 6 (F6) is a component of
mitochondrial ATP synthase which is required for the
interactions of the catalytic and proton-translocating
segments.
Length = 99
Score = 28.2 bits (63), Expect = 3.7
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 190 TDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 239
D +++L+V KI ++ + L + PE K ++++ +AK+YGG
Sbjct: 34 LDPIQQLFVDKIREYKQKSKSSGGKLVDAGPEYEKELKEELEKLAKQYGG 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,519,335
Number of extensions: 2496668
Number of successful extensions: 1962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1951
Number of HSP's successfully gapped: 25
Length of query: 500
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 399
Effective length of database: 6,457,848
Effective search space: 2576681352
Effective search space used: 2576681352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)