RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4699
(500 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 283 bits (726), Expect = 4e-89
Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 2/286 (0%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKA 175
GTLG+IT+ V+K+ P+ ++ LFP F V L++I P+ IR+ D + +
Sbjct: 299 GTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQL 358
Query: 176 GQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAK 235
++P G + T + K Y+ I F +C + + FEG + V + ++ I
Sbjct: 359 SFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILS 418
Query: 236 RYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 295
+ G + G+ Y + YIRDF D+ D ET+V + L + K+
Sbjct: 419 KNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFV 478
Query: 296 QECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACG 355
+ I + ++ TY G C+YF F + ++ Q + + D I G
Sbjct: 479 KHFKDQGIPAW-ICAHISHTYTNGVCLYFIFASKQNENKDMAQYIE-AKKLMTDIIFKYG 536
Query: 356 GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
GSLSHHHGVG W + ++ + +YRS K+ +DP ++ K
Sbjct: 537 GSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDICNPRK 582
Score = 77.1 bits (190), Expect = 4e-15
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 425 PEGPQSCRHIFKTLKAVVDSAVS--GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQA 482
+ + K + D GSLSHHHGVG W + ++ + +YRS K+
Sbjct: 512 QNENKDMAQYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKET 571
Query: 483 LDPNNVFASGNLL 495
+DP ++ L+
Sbjct: 572 IDPKDICNPRKLI 584
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 87.8 bits (218), Expect = 1e-18
Identities = 51/333 (15%), Positives = 98/333 (29%), Gaps = 67/333 (20%)
Query: 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVK---CLREI 155
P D F++ G+ TK+ + P+P K ++F + V+ LR +
Sbjct: 216 PTLDGMFTQ--------ANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPL 267
Query: 156 AKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVL 215
P+S+ + + + T+ +D M A +
Sbjct: 268 RMSNTIPNSVVIASTLWEAGSAHLTR----AQYTTEPGHTPDSVIKQMQKDTGMGAWNLY 323
Query: 216 FE--GDPEDVKNNEDKIYSIAKRYGGIP------AGESN---GRRGYMLTYIIAYIRDFA 264
G E V N + + K+ G AG++ R M + +++F
Sbjct: 324 AALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLM--SGVPNLQEFG 381
Query: 265 CDYYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYF 324
+ G P + K + RV Y F
Sbjct: 382 LYNWRGGGGSMWFAP------VSEARGSECK--------KQAAMAKRVLHKYGLDYVAEF 427
Query: 325 YFG-----------FNARDFENPDQTLTYLQHCARDEIIA-----CGGSLSHHHGVGKIR 368
++ + P++T +E++ + V
Sbjct: 428 IVAPRDMHHVIDVLYDRTN---PEETKR--ADACFNELLDEFEKEGYAV----YRVNTRF 478
Query: 369 SHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
+ V +L + K+A+DPNN+ A G+
Sbjct: 479 QDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGR 511
Score = 41.2 bits (97), Expect = 7e-04
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 454 HGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASG 492
+ V + V +L + K+A+DPNN+ A G
Sbjct: 472 YRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPG 510
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 82.2 bits (203), Expect = 8e-17
Identities = 51/368 (13%), Positives = 95/368 (25%), Gaps = 53/368 (14%)
Query: 60 ATGDDVKAG----DIPVAEGEAEDASRMEEGLRGHLEMENTQHPNEDQAFSEHAQSTVEQ 115
A G+ ++ G P + + P D FS+
Sbjct: 205 ANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQ-------- 256
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQ--PSSIRLVDNVQL 173
+G++TK+ + + P P + I P + + I R ++ + ++ L
Sbjct: 257 SNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL 316
Query: 174 KAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSI 233
A Y T+ L + KI + G + + I
Sbjct: 317 DAAVLGDK-RSYSS-RTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDA 374
Query: 234 AKRYGGI------PAGESN---GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV 284
G+ E++ R M I + + + P
Sbjct: 375 FSAIPGVKFYFPEDTPENSVLRVRDKTM--QGIPTYDELKWIDWLPNGAHLFFSP----- 427
Query: 285 LLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFG---FNAR-----DFENP 336
V + + + Q F G + + ++
Sbjct: 428 --IAKVSGEDAMMQ-------YAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDL 478
Query: 337 DQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVG---LELYRSTKQALDP 393
Q +Q R I C + + E + L K A+DP
Sbjct: 479 IQ-KRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDP 537
Query: 394 NNMFADGK 401
N + A GK
Sbjct: 538 NGIIAPGK 545
Score = 34.5 bits (79), Expect = 0.076
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 454 HGVGKIRSHWYPEHVSQVG---LELYRSTKQALDPNNVFASG 492
+ E + L K A+DPN + A G
Sbjct: 503 YRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPG 544
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 72.4 bits (178), Expect = 8e-14
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 11 TKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATG 62
K ADKNDK+VKDLV LL+ET+LL PQ HA RI+RMIKLGLGI+++D A
Sbjct: 358 QKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADD 417
Query: 63 DDVKAGDIPVAEGEAEDASRMEE 85
+ +D SRMEE
Sbjct: 418 TSAAVTEEMPPLEGDDDTSRMEE 440
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 68.4 bits (168), Expect = 2e-12
Identities = 50/319 (15%), Positives = 83/319 (26%), Gaps = 101/319 (31%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRC--QPSSIRLVDNVQL 173
GTLG+IT LK+ P+PR + + + + +K L A+ +S L+ L
Sbjct: 212 GTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGI-AQGEAAGNLTSFELIAETPL 270
Query: 174 KAGQFFRPDPGYLELLTDGLKKLYVTKILGFRD--DEMCAATVLFE--GDPEDVKNNEDK 229
+ RD + VL E +D + +
Sbjct: 271 DF----------------------SVRHANNRDPLEARYPWYVLIELSSPRDDARAALES 308
Query: 230 IYSIAKRYGGIPAG--------------------ESNGRRGYMLTYIIAYIRDFACDYYF 269
I G + + G + + I
Sbjct: 309 ILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDI------------ 356
Query: 270 IGDSFETSVPWDKTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFG-- 327
SVP + FG
Sbjct: 357 -------SVPVAAVPQFIEQANAAVVALIPGARP--------------------VPFGHL 389
Query: 328 ------FN-ARDFENPDQTLTYLQHCARDEI----IACGGSLSHHHGVGKIRSHWYPEHV 376
+N ++ H + + GGS+S HG+G ++ E
Sbjct: 390 GDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVK 449
Query: 377 SQVGLELYRSTKQALDPNN 395
+ +EL RS K LDP+
Sbjct: 450 DKTAIELMRSIKALLDPHG 468
Score = 44.5 bits (106), Expect = 6e-05
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 414 YSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGL 473
Y+V + E + + + VV + GS+S HG+G ++ E + +
Sbjct: 396 YNVSQPVGADKAEFLARWHDVSQVVFEVV-LRLGGSISAEHGIGVMKRDELAEVKDKTAI 454
Query: 474 ELYRSTKQALDPNN 487
EL RS K LDP+
Sbjct: 455 ELMRSIKALLDPHG 468
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 64.3 bits (157), Expect = 3e-11
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Query: 11 TKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDEVATG 62
++ AD+NDKAVKDLV LLF+TSLL P +A RI+RMIKLGL +++E+E A
Sbjct: 374 RRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA-- 431
Query: 63 DDVKAGDIPVAE 74
+ + AE
Sbjct: 432 AEAPVAETAPAE 443
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 55.0 bits (133), Expect = 3e-08
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 11 TKINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGLGIEDEDE 58
++ D++DK V DL +LFET+ L + + RI RM++L L I+ + +
Sbjct: 611 RRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAK 666
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 50.0 bits (120), Expect = 9e-07
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 15 ADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGL 51
DK VKDL LL+ET+LL P A+RI+R+I LGL
Sbjct: 360 GGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 404
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 44.9 bits (107), Expect = 5e-06
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 12 KINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMI 47
+ +++ + V LL + +LL P + R+++++
Sbjct: 81 RAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 124
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 47.4 bits (113), Expect = 9e-06
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 14 NADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMIKLGL 51
DK VKDL LL+ET+LL P A+RI+R+I LGL
Sbjct: 631 EGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 676
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 68/479 (14%), Positives = 146/479 (30%), Gaps = 104/479 (21%)
Query: 2 VIQKFVTE---------YTKINADKNDKAVK-----DLVNLLFETS-LLPQVHAARIHRM 46
++QKFV E + I ++ ++ + + L+ + + + + +R+
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 47 IKL--GL-GIEDEDEVA------TGDDVKAGDIPVAEGEAEDASRMEEGLRGH---LEME 94
+KL L + V +G A + + +++ + L ++
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVAL-------DVCLSYKVQCKMDFKIFWLNLK 190
Query: 95 NTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFP-NFEAGVKCLR 153
N P L ++ K++ +I P + S + LR
Sbjct: 191 NCNSPETV---------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 154 EIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAAT 213
+ K + + + ++ NVQ + K L T+ D A T
Sbjct: 236 RLLKSKPYENCLLVLLNVQ---------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 214 VLFEGDPEDVKNNEDKIYSIAKRYGGIPAG----ESNGRRGYMLTYIIAYIRDFAC--DY 267
D + D++ S+ +Y E L+ I IRD D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 268 Y--FIGDSFETSVPWDKTVLLCINV-KKRLTQEC-TALSIKFFETSCRVT-QTYDAGSCI 322
+ D T + +NV + ++ LS+ F S + +
Sbjct: 347 WKHVNCDKLTT------IIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL----SL 394
Query: 323 YFYFGFNARDFENPDQTLTYLQH---CARDEIIACGGSLSHHHGVGKIRSHW---YPEHV 376
+ + + L + ++S +++ Y H
Sbjct: 395 I----WFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIYLELKVKLENEYALH- 446
Query: 377 SQVGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIF 435
+ ++ Y K D +++ +DQ +S + + L +PE R +F
Sbjct: 447 -RSIVDHYNIPK-TFDSDDL---IPPYLDQYFYS---HIGHHLKNIEHPERMTLFRMVF 497
Score = 37.1 bits (85), Expect = 0.014
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 360 HHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSVYKL 419
HHH H + + Y+ + F + D K D+ S+
Sbjct: 2 HHH-------HHMDFETGEHQYQ-YKDILSVFEDA--F---VDNFDCKDVQDMPKSILSK 48
Query: 420 T-MDHY---PEGPQSCRHIFKTL----KAVVDSAVSGSLSHHHG--VGKIR------SHW 463
+DH + +F TL + +V V L ++ + I+ S
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 464 YPEHVSQVGLELYRSTKQALDPNNV 488
++ Q LY Q NV
Sbjct: 109 TRMYIEQRD-RLYNDN-QVFAKYNV 131
Score = 35.2 bits (80), Expect = 0.055
Identities = 41/266 (15%), Positives = 81/266 (30%), Gaps = 65/266 (24%)
Query: 258 AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSI----------KFFE 307
A++ +F C + D S+ + + I K ++ KF E
Sbjct: 28 AFVDNFDCKD--VQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 308 TSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKI 367
R Y + + T Y++ RD + ++
Sbjct: 85 EVLR--INYK-----FLMSPIKTEQRQPSMMTRMYIE--QRDRL---------YNDNQVF 126
Query: 368 RSHWYPEHVSQVGLELYRSTKQAL---DPNN------MFADGKEEM------DQKQFSDL 412
+VS+ L+ Y +QAL P + GK + K +
Sbjct: 127 A----KYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 413 LYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVG 472
+ ++ L + + P++ + + L +D + S S H K+R H + +
Sbjct: 181 DFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRR-- 236
Query: 473 LELYRSTKQAL-------DPN--NVF 489
L + + L + N F
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF 262
Score = 33.3 bits (75), Expect = 0.24
Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 57/239 (23%)
Query: 222 DVKNNEDKIYSI--AKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDY------YFIGDS 273
D K+ +D SI + I + L + + F+ +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-------LSKQEEMVQKFVEEV 86
Query: 274 FETSVPWDKTVLLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDF 333
+ + + + E S+ + + Y+ Y + +
Sbjct: 87 LRINYKF---------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 334 ENPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTK-QALD 392
Q L L+ ++ G G GK + V L++ S K Q
Sbjct: 138 LKLRQALLELRP--AKNVLIDGVL-----GSGK----------TWVALDVCLSYKVQCKM 180
Query: 393 PNNMF-----ADGKEEMDQKQFSDLLYSV---YKLTMDHYPEGPQSC-------RHIFK 436
+F E + LLY + + DH R + K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus
thermophilus}
Length = 219
Score = 40.5 bits (95), Expect = 5e-04
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSIL---FPNFEAGVKCLREIA 156
G LG +VVL++RP FP + L +
Sbjct: 99 GLLGRAEEVVLRLRPGRAQAFLRRPFSGSFPRLVPTPRFLFALE 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.013
Identities = 48/287 (16%), Positives = 81/287 (28%), Gaps = 110/287 (38%)
Query: 17 KNDKAVKDLVN----LLFET---SLL------PQVHAARIHRMIKLGLGIEDEDEVATGD 63
K KA +D+ N +T S+L P IH + G I + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT--IHFGGEKGKRIRENYSAMIFE 1694
Query: 64 DVKAGDI---PVAEGEAEDASR-MEEGLRGHLEM-ENTQHP------------------- 99
+ G + + + E ++ +G L + TQ P
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ-PALTLMEKAAFEDLKSKGLI 1753
Query: 100 NEDQAFSEHAQSTVEQGTLG----------VIT-----KVVLKIRPQPRCQKFGSIL--- 141
D F+ H S LG V++ +VV R G +
Sbjct: 1754 PADATFAGH--S------LGEYAALASLADVMSIESLVEVV-FYR--------GMTMQVA 1796
Query: 142 FPNFEAGVKCLREIAKKRCQPSSI----------RLVDNVQLKAGQFFRP----DPG--Y 185
P E G IA P + +V+ V + G Y
Sbjct: 1797 VPRDELGRSNYGMIA---INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 186 --------LELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVK 224
L+ +T+ L + + KI ++ E+V+
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKI------DIIELQKSLS--LEEVE 1892
Score = 36.2 bits (83), Expect = 0.033
Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 53/151 (35%)
Query: 377 SQV---GLELYRSTKQALDPNNMFADGKEEMDQKQFSDLLYSV----------------- 416
SQ G++LY+++K A +++ D +S+
Sbjct: 1626 SQEQGMGMDLYKTSKAA---QDVW----NRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 417 ---------Y-KLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPE 466
Y + + +G IFK + + S S + G + + +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEI-----NEHSTSYTFRSEKGLLSA---TQ 1730
Query: 467 H-------VSQVGLELYRSTKQALDPNNVFA 490
+ + E +S K + + FA
Sbjct: 1731 FTQPALTLMEKAAFEDLKS-KGLIPADATFA 1760
Score = 35.8 bits (82), Expect = 0.044
Identities = 44/254 (17%), Positives = 79/254 (31%), Gaps = 77/254 (30%)
Query: 15 ADKNDKAVKDLVN--LLFETSLLPQVHAARIHRMIKLGLGIEDEDEVATGDDV--KAGDI 70
AD +LV L + +SL+ + +++ L L E E+ G+D+ A +
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT-EFENCYLEGNDIHALAAKL 108
Query: 71 PVAEGEAEDASRMEEGLRGHLE-MENTQHP---NEDQAFSEHAQSTVEQGTLGVITKVVL 126
++ E ++ ++ + P + A G ++
Sbjct: 109 LQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSALFRAVGE----GNAQLVA---- 158
Query: 127 KIRPQPRCQKFG------------SILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLK 174
I FG L+ + V L + + + L+
Sbjct: 159 -I--------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE----LIRTTL-D 204
Query: 175 AGQFF---------------RPDPGYLE-------LLTDGLKKL---YVT-KILGFRDDE 208
A + F PD YL L+ G+ +L VT K+LGF E
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGE 262
Query: 209 M----CAATVLFEG 218
+ AT +G
Sbjct: 263 LRSYLKGATGHSQG 276
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 36.1 bits (84), Expect = 0.028
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 12 KINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMI 47
+ +++ + V LL + +LL P + R+++++
Sbjct: 579 RAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 622
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 32.7 bits (74), Expect = 0.26
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKR 159
G GVIT+ + + P P ++ ++ +F A + R
Sbjct: 230 GQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPR 273
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 31.7 bits (71), Expect = 0.56
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 116 GTLGVITKVVLKIRPQP--RCQKFGSILFPNFEA 147
+T V ++ P RCQ + I + A
Sbjct: 206 LGRCFLTSVTMQAGPNFRQRCQSYTDIPWRELFA 239
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structura genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 31.6 bits (71), Expect = 0.64
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 411 DLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGS------LSHHHGVGKIRSHWY 464
++ Y V L S + + +V V L H+ + H+
Sbjct: 435 EIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFG 494
Query: 465 PEHVSQVGLELYRSTKQALDPNNVFASG 492
+ K DP + + G
Sbjct: 495 NRW------SRFVDRKAMFDPMAILSPG 516
Score = 28.9 bits (64), Expect = 4.5
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEA 147
G G+IT+ + ++P P ++ +++ F+
Sbjct: 223 GQFGIITRARVLLQPAPDMVRWIRVVYTEFDE 254
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics,
PSI-2, protein structur initiative; 2.30A {Pseudomonas
syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Length = 276
Score = 30.0 bits (67), Expect = 1.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 32 TSLLPQVHAARIHRMIKLGLGIEDEDEVATGD--DVKAGDIPV 72
+ P VH A +H LGI D GD +K G++PV
Sbjct: 186 SGRYPSVHGAPVHIGEPGRLGINDLSRPDFGDAVSIKPGEVPV 228
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION
transport, CF(0), stator, transport, acetylation,
hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1
PDB: 1vzs_A 2wss_V*
Length = 77
Score = 27.6 bits (61), Expect = 2.1
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 190 TDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 239
D ++KL+V KI +R + + + PE ++ + +++ + + YG
Sbjct: 5 LDPVQKLFVDKIREYRT-KRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK 53
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD
SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 29.8 bits (66), Expect = 2.7
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 6/61 (9%)
Query: 86 GLRGHLEMENTQHPNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQPRCQKFGSILFPNF 145
G + + A + +I + L+ P R + P
Sbjct: 178 KASGAYALRKFARNDPQIAP------LLAHVGRSLIVEATLQAAPNQRLRCQSWFNIPYG 231
Query: 146 E 146
E
Sbjct: 232 E 232
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease,
hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe}
PDB: 4fcx_B*
Length = 417
Score = 29.5 bits (65), Expect = 3.0
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 253 LTYIIAYIRDFACDYYFI-GDSFETSVPWDKTVLLCINVKKRLTQECTALSIKF 305
I+ R+ D + GD F + P K + + + ++
Sbjct: 41 FNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELEL 94
>3nhi_A D7 protein; all helical, odorant-binding protein, ligand-binding
protein transport protein; HET: EAH; 1.43A {Anopheles
stephensi} PDB: 3ngv_A* 3nht_A*
Length = 296
Score = 29.1 bits (64), Expect = 3.5
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 335 NPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIR-------SHWYPEHVSQVGLELYRST 387
+ +Q L + C D + + ++ R +H Y + V GL++Y
Sbjct: 7 DAEQALYVYKRCYEDHLPSGSDRKTYMTLWNAWRLEPNDAITHCYAKCVL-TGLQIYDPQ 65
Query: 388 KQALDPNNMFADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVS 447
+ A + + + Q + Y+ + SC ++ V + V+
Sbjct: 66 ENAFKSDRIPVQYQAYKTITQSKQKEVTEYQKALAAANAKSGSCVDLYNAYLPVHNRFVN 125
Query: 448 GSLSHHHGVGKIRSHWYPEH 467
S +HG + + Y
Sbjct: 126 LSRQLYHGTVEGAAKIYAAM 145
>3dxl_A Allergen AED A 2; odorant-binding protein, all-helical, secreted;
1.30A {Aedes aegypti} PDB: 3dy9_A 3dye_A* 3dzt_A*
Length = 303
Score = 29.0 bits (64), Expect = 3.9
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 15/147 (10%)
Query: 335 NPDQTLTYLQHCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQ-------VGLELYRST 387
+P++ L C D + L + + +Q V LY
Sbjct: 5 DPEEMLFIFTRCMEDNLEDGANRLPMLAKWKEWINEPVDSPATQCFGKCVLVRTGLYDPV 64
Query: 388 KQALDPNNM---FADGKEEMDQKQFSDLLYSVYKLTMDHYPEGPQSCRHIFKTLKAVVDS 444
Q D + + F ++ + Y + P C +FK V +
Sbjct: 65 AQKFDASVIQEQFKAYPSLGEKSKVEA-----YANAVKQLPSTNNDCAAVFKAYDPVHKA 119
Query: 445 AVSGSLSHHHGVGKIRSHWYPEHVSQV 471
S + HG ++ Y + +
Sbjct: 120 HKDTSKNLFHGNKELTKGLYEKLGKDI 146
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 28.0 bits (62), Expect = 8.4
Identities = 14/170 (8%), Positives = 38/170 (22%), Gaps = 9/170 (5%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKA 175
G G++T+ + + + + + R++DN
Sbjct: 217 GNFGIVTRYWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWH 276
Query: 176 GQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAK 235
Y + + L R + +G + + + +
Sbjct: 277 QSNSAAGTPYASMHSVFY--------LNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVN 328
Query: 236 RYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 285
G+ ++ + D ++ PW
Sbjct: 329 EGTGVEPAVQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRK-PWTAAQA 377
>1no7_A Major capsid protein; novel fold, alpha plus beta, viral capsid
protein, folding nucleus, viral protein; 2.90A {Human
herpesvirus 1} SCOP: e.48.1.1
Length = 604
Score = 28.1 bits (62), Expect = 8.7
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 3 IQKFVTEYTKINADKNDKAVKDLVNLLFETSLLPQVHAARIHRMIKLGLGIEDEDEVATG 62
+ + V ++T + +A +L +L+ + +LLP + M + L + V+ G
Sbjct: 250 LAQLVDDFTLTGPELGGQAQAELNHLMRDPALLPPLVWDCDALMRRAALDRHRDCRVSAG 309
Query: 63 DD----VKAGDIPVAEGEAEDASRMEEGLRGHLEMENTQHPNEDQ 103
A ++ A+ D + + P+
Sbjct: 310 GHDPVYAAACNVATADFNRNDGQLL-HNTQARAADAADDRPHRGA 353
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,964,802
Number of extensions: 494725
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 40
Length of query: 500
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 402
Effective length of database: 3,965,535
Effective search space: 1594145070
Effective search space used: 1594145070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)