RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4699
(500 letters)
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 287
Score = 119 bits (298), Expect = 6e-31
Identities = 32/297 (10%), Positives = 58/297 (19%), Gaps = 49/297 (16%)
Query: 116 GTLGVITKVVLKIRPQPRCQKFGSILFPNFEAGVKCLREIAKKRCQPSSIRLVDNVQLKA 175
G L ++ +R Q +I +A V + R +P S +D + +
Sbjct: 14 GDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQL 73
Query: 176 GQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAK 235
G + + I
Sbjct: 74 N------------------------------LGRWNFYGALYGPEPIRRVLWETIKDAFS 103
Query: 236 RYGGIPAGESNG---------RRGYMLTY--IIAYIRDFACDYYFIGDSFETSVPWDKTV 284
G+ R M + +
Sbjct: 104 AIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDA 163
Query: 285 LLCINVKKRLTQECTALSIKFFETSCRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQ 344
++ + FN +D + +
Sbjct: 164 MMQY-------AVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLM- 215
Query: 345 HCARDEIIACGGSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
D+ A G H + + L K A+DPN + A GK
Sbjct: 216 RTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGK 272
Score = 59.8 bits (144), Expect = 1e-10
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 414 YSVYKLTMDHYPEGPQSCRHIFKTLKAVVDSAVS--GSLSHHHGVGKIRSHWYPEHVSQV 471
+ + + + R + ++ ++D + H + +
Sbjct: 191 EMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSS 250
Query: 472 GLELYRSTKQALDPNNVFASG 492
L K A+DPN + A G
Sbjct: 251 FLRFNEVLKNAVDPNGIIAPG 271
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 114 bits (287), Expect = 2e-29
Identities = 33/275 (12%), Positives = 70/275 (25%), Gaps = 25/275 (9%)
Query: 140 ILFPN---FEAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKL 196
++F + V LR + P+S+ + + E
Sbjct: 8 VIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTE--PGHTPDS 65
Query: 197 YVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRR 249
+ ++ G E V N + + K+ G +
Sbjct: 66 VIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKY 125
Query: 250 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTQECTALSIKFFETS 309
L + +++F + G P + ++ A++ +
Sbjct: 126 RAQLMSGVPNLQEFGLYNWRGGGGSMWFAP-------VSEARGSECKKQAAMAKRVLHKY 178
Query: 310 ---CRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQHCARDEIIACGGSLSHHHGVGK 366
+ R + + DE G + V
Sbjct: 179 GLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGY---AVYRVNT 235
Query: 367 IRSHWYPEHVSQVGLELYRSTKQALDPNNMFADGK 401
+ V +L + K+A+DPNN+ A G+
Sbjct: 236 RFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGR 270
Score = 56.6 bits (136), Expect = 2e-09
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 417 YKLTMDHYPEGPQSCRHIFKTLKAVVDSAVSGSLSHHHGVGKIRSHWYPEHVSQVGLELY 476
+ + + + P+ + ++D + V + V +L
Sbjct: 195 HVIDVLYDRTNPEETKRADACFNELLDEFE-KEGYAVYRVNTRFQDRVAQSYGPVKRKLE 253
Query: 477 RSTKQALDPNNVFASG 492
+ K+A+DPNN+ A G
Sbjct: 254 HAIKRAVDPNNILAPG 269
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 37.6 bits (87), Expect = 5e-04
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 12 KINADKNDKAVKDLVNLLFETSLL--------PQVHAARIHRMI 47
+ +++ + V LL + +LL P + R+++++
Sbjct: 70 RAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 113
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 268
Score = 36.7 bits (83), Expect = 0.004
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 60 ATGDDVKAGDIPVAEGEAEDA----SRMEEGLRGHLEMENTQHPNEDQAFSEHAQSTVEQ 115
A G+ ++ G + + + + + + P D FS+
Sbjct: 200 ANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQ-------- 251
Query: 116 GTLGVITKVVLKIRPQP 132
+G++TK+ + + P P
Sbjct: 252 SNMGIVTKIGIWLMPNP 268
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 294
Score = 36.6 bits (84), Expect = 0.005
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 13/98 (13%)
Query: 303 IKFFETSCRVTQTYDAGSCIYFYFG---FNARDFENPDQTLTYLQHCARDEIIACGGSLS 359
+++E + Y +F F+ + L+ + + G
Sbjct: 194 TEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVHALKEQMLELLQQRGAQYP 253
Query: 360 HHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNMF 397
H VG + E + + DP N
Sbjct: 254 AEHNVGHLYKAP----------ETLQKFYRENDPTNSM 281
Score = 33.9 bits (77), Expect = 0.032
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 10/45 (22%)
Query: 448 GSLSHHHGVGKIRSHWYPEHVSQVGLELYRSTKQALDPNNVFASG 492
H VG + E + + DP N G
Sbjct: 250 AQYPAEHNVGHLYKAP----------ETLQKFYRENDPTNSMNPG 284
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 236
Score = 35.9 bits (81), Expect = 0.006
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 99 PNEDQAFSEHAQSTVEQGTLGVITKVVLKIRPQP 132
P D F++ G+ TK+ + P+P
Sbjct: 211 PTLDGMFTQ--------ANYGICTKMGFWLMPKP 236
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 206
Score = 30.7 bits (68), Expect = 0.29
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 116 GTLGVITKVVLKIRP 130
G GVIT+ + + P
Sbjct: 191 GQFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 216
Score = 28.4 bits (62), Expect = 1.7
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 116 GTLGVITKVVLKIRP 130
+T V ++ P
Sbjct: 201 LGRCFLTSVTMQAGP 215
>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber
tree (Hevea brasiliensis) [TaxId: 3981]}
Length = 273
Score = 28.2 bits (62), Expect = 2.5
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 175 AGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA 234
A Q PD L GL + F ++ C + + + N +
Sbjct: 156 APQCPFPDRYLGTALNTGLFDYVW---VQFYNNPPCQYSSGNINNIINSWNRWTTSINAG 212
Query: 235 KRYGGIPAGESNGRRGYMLTYIIAY 259
K + G+PA GY+ ++
Sbjct: 213 KIFLGLPAAPEAAGSGYVPPDVLIS 237
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 66
Score = 25.8 bits (57), Expect = 3.0
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 191 DGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 239
D ++KL+V KI +R + + + PE ++ + +++ + + YG
Sbjct: 2 DPVQKLFVDKIREYRT-KRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK 49
>d1i0ra_ b.45.1.2 (A:) Ferric reductase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 161
Score = 27.1 bits (59), Expect = 3.5
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 310 CRVTQTYDAGSCIYFYFGFNARDFENPDQTLTYLQH 345
+V + D G+ F + + LTY +
Sbjct: 115 AKVVKECDVGTHTLFVGEAVDAEVLKDAEVLTYADY 150
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 562
Score = 27.5 bits (61), Expect = 4.1
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 3 IQKFVTEYTKINADKNDKAVKDLVNLLFETSLLP-----------QVHAARIHRMIKLGL 51
+ + V ++T + +A +L +L+ + +LLP + R HR ++
Sbjct: 217 LAQLVDDFTLTGPELGGQAQAELNHLMRDPALLPPLVWDCDALMRRAALDR-HRDCRVSA 275
Query: 52 GIEDEDEVATGD 63
G D A +
Sbjct: 276 GGHDPVYAAACN 287
>d1ospo_ b.76.1.1 (O:) Outer surface protein A {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 251
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 9 EYTKINADKNDKAVKDLVNLLFETSL 34
EYT I +D + KA + L + E +L
Sbjct: 124 EYTGIKSDGSGKAKEVLKGYVLEGTL 149
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Escherichia coli [TaxId: 562]}
Length = 228
Score = 26.6 bits (58), Expect = 6.8
Identities = 16/104 (15%), Positives = 23/104 (22%), Gaps = 10/104 (9%)
Query: 146 EAGVKCLREIAKKRCQPSSIRLVDNVQLKAGQFFRPD---------PGYLELLTDGLKKL 196
+AG K +R L L+ L +
Sbjct: 32 KAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH 91
Query: 197 YVT-KILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 239
V +I+G N +IA YGG
Sbjct: 92 NVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGG 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,933,647
Number of extensions: 94391
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 19
Length of query: 500
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,185,626
Effective search space: 487292286
Effective search space used: 487292286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)