RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy47
(1001 letters)
>gnl|CDD|238644 cd01319, AMPD, AMP deaminase (AMPD) catalyzes the hydrolytic
deamination of adensosine monophosphate (AMP) at
position 6 of the adenine nucleotide ring. AMPD is a
diverse and highly regulated eukaryotic key enzyme of
the adenylate catabolic pathway.
Length = 496
Score = 625 bits (1615), Expect = 0.0
Identities = 257/403 (63%), Positives = 302/403 (74%), Gaps = 21/403 (5%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTH+H ++CMNQKHLLRFIKK L+ DEVV R G+ +TL++VF S+ LT+
Sbjct: 55 FYNVRKVDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVI-FRDGKKLTLKEVFDSLKLTA 113
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
YDL+VD LDVHADRNTFHRFDKFN KYNPIGESRLRE+FLKTDNY+ G Y A I KEV +
Sbjct: 114 YDLSVDTLDVHADRNTFHRFDKFNLKYNPIGESRLREIFLKTDNYINGRYLAEITKEVFS 173
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
DLEESKYQ+AE RLSIYG+S+DEWDKLA+W ++++++S N+RWLIQIPRLYD++K + ++
Sbjct: 174 DLEESKYQHAEYRLSIYGRSKDEWDKLASWVVDNDLFSPNVRWLIQIPRLYDVYKKSGIV 233
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQ 791
N+FQE+L+NIF+PLFE T D SSHP LH FLQ VIGFDSVDDESK E F P +
Sbjct: 234 NSFQEMLENIFEPLFEATKDPSSHPELHVFLQQVIGFDSVDDESKSE-RRFTRKFPKPEE 292
Query: 792 WNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKA---DALTSKFPNAQDI 848
W EENP Y+YY YY YAN+T LN R L+P +A D L S F A I
Sbjct: 293 WTSEENPPYSYYLYYMYANITTLNSFRKARGFNTFVLRPHCGEAGDIDHLASAFLLAHGI 352
Query: 849 YDHEITIR---------------IAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDP 893
H I +R IAMSPLSNNSLFL+Y +NP PE+ RGL VSLSTDDP
Sbjct: 353 -SHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSLFLSYEKNPFPEFFKRGLNVSLSTDDP 411
Query: 894 LQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPH 936
LQFHFTKEPLMEEYSIAAQVWKLS+CDMCELARNSVL SGF H
Sbjct: 412 LQFHFTKEPLMEEYSIAAQVWKLSTCDMCELARNSVLQSGFEH 454
Score = 239 bits (612), Expect = 2e-69
Identities = 89/129 (68%), Positives = 113/129 (87%)
Query: 323 SDRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAE 382
+DRNTFHRFDKFN KYNPIGESRLRE+FLKTDNY+ G Y A I KEV +DLEESKYQ+AE
Sbjct: 125 ADRNTFHRFDKFNLKYNPIGESRLREIFLKTDNYINGRYLAEITKEVFSDLEESKYQHAE 184
Query: 383 LRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIF 442
RLSIYG+S+DEWDKLA+W ++++++S N+RWLIQIPRLYD++K + ++N+FQE+L+NIF
Sbjct: 185 YRLSIYGRSKDEWDKLASWVVDNDLFSPNVRWLIQIPRLYDVYKKSGIVNSFQEMLENIF 244
Query: 443 KPLFEVDTH 451
+PLFE
Sbjct: 245 EPLFEATKD 253
Score = 207 bits (528), Expect = 8e-58
Identities = 78/110 (70%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
Query: 448 VDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVD 507
VDTH+H ++CMNQKHLLRFIKK L+ DEVV R G+ +TL++VF S+ LT+YDL+VD
Sbjct: 61 VDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVI-FRDGKKLTLKEVFDSLKLTAYDLSVD 119
Query: 508 MLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIK 557
LDVHADRNTFHRFDKFN KYNPIGESRLRE+FLKTDNY+ G Y A I K
Sbjct: 120 TLDVHADRNTFHRFDKFNLKYNPIGESRLREIFLKTDNYINGRYLAEITK 169
>gnl|CDD|233409 TIGR01429, AMP_deaminase, AMP deaminase. This model describes AMP
deaminase, a large, well-conserved eukaryotic protein
involved in energy metabolism. Most members of the
family have an additional, poorly alignable region of
150 amino acids or more N-terminal to the region
included in the model.
Length = 611
Score = 570 bits (1471), Expect = 0.0
Identities = 256/418 (61%), Positives = 303/418 (72%), Gaps = 21/418 (5%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTHIHAA+ MNQKHLLRFIK LK DE V +R G+ +TLR+VF S++L
Sbjct: 166 FYNVRKVDTHIHAAASMNQKHLLRFIKHKLKTEPDETVI-ERDGKKLTLREVFDSLHLDP 224
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
YDL+VD LDVHADRNTFHRFDKFN KYNP+GESRLRE+FLKTDNY+GG YFA ++KEV
Sbjct: 225 YDLSVDTLDVHADRNTFHRFDKFNLKYNPVGESRLREIFLKTDNYIGGKYFAELVKEVFT 284
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
DLE+SKYQ AE RLSIYG+S EWD LA W I+ +V+S N+RWLIQ+PRLYD+++S KL+
Sbjct: 285 DLEDSKYQYAEPRLSIYGRSPKEWDSLARWIIDHDVFSPNVRWLIQVPRLYDVYRSKKLV 344
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQ 791
NF ++L+N+F PLFEVT D SSHP LH FLQ V GFDSVDDESK E+ +F +P +
Sbjct: 345 PNFGDMLENVFLPLFEVTKDPSSHPELHLFLQQVTGFDSVDDESKHEDHMFSRKFPSPDE 404
Query: 792 WNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKA---DALTSKFPNAQDI 848
W E+NP Y+YY YY YAN+ VLN R L+P +A D L S F + I
Sbjct: 405 WTSEQNPPYSYYLYYMYANIMVLNNFRRERGLNTFLLRPHCGEAGSVDHLVSAFLTSHGI 464
Query: 849 YDHEITIR---------------IAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDP 893
+H I +R IAMSPLSNNSLFL Y +NPLPEYL +GL VSLSTDDP
Sbjct: 465 -NHGILLRKVPVLQYLYYLTQIPIAMSPLSNNSLFLEYSKNPLPEYLHKGLNVSLSTDDP 523
Query: 894 LQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGV-AGWDLPDVPNAG 950
LQFH+TKE LMEEY+IAAQVWKLS+CDMCELARNSVL SGF H V W P+ G
Sbjct: 524 LQFHYTKEALMEEYAIAAQVWKLSTCDMCELARNSVLQSGFEHQVKQHWLGPNYYKEG 581
Score = 217 bits (555), Expect = 2e-60
Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 71/375 (18%)
Query: 131 EDLEQASRLLVEALHIRDRYMDISSQTFPQVTARFLREMDNVASLPHSTKIVHEDKKTIA 190
EDL +A++ L +AL +R++Y ++ RF S + V ++
Sbjct: 1 EDLAEAAKSLAKALMLREKYARLAYH-------RFPDTTAQYLSHQGYPESVPLEEGL-- 51
Query: 191 DTDKHFKPSDNDSSTGQVAPLWRYKTISNLSNEKSV-----PAEDLEQASRLLVEALHIR 245
D H P + + + V LE+ + +
Sbjct: 52 -PDFHPPPDPQEDPYCLDDDAPPIELGYLVRMHGGVLFVYDNDTMLERQEPHFLVPPTLE 110
Query: 246 DRYMDIS----------SQTFPQVTARFLR------EMDNVASLPHSTKIV-HEDKKTIA 288
Y+D+ +++F ++L E+ N S K V H D +
Sbjct: 111 TYYVDMEHLLALISDGPTKSFCFRRLQYLESKFNLHELLNEMSELKEQKSVPHRDFYNVR 170
Query: 289 DTDKHFKPSDNDSSTGQVAPLWRY--KTISNLSNEK------------------------ 322
D H + +S Q L R+ + +E
Sbjct: 171 KVDTHIHAA---ASMNQ-KHLLRFIKHKLKTEPDETVIERDGKKLTLREVFDSLHLDPYD 226
Query: 323 ---------SDRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADL 373
+DRNTFHRFDKFN KYNP+GESRLRE+FLKTDNY+GG YFA ++KEV DL
Sbjct: 227 LSVDTLDVHADRNTFHRFDKFNLKYNPVGESRLREIFLKTDNYIGGKYFAELVKEVFTDL 286
Query: 374 EESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINN 433
E+SKYQ AE RLSIYG+S EWD LA W I+ +V+S N+RWLIQ+PRLYD+++S KL+ N
Sbjct: 287 EDSKYQYAEPRLSIYGRSPKEWDSLARWIIDHDVFSPNVRWLIQVPRLYDVYRSKKLVPN 346
Query: 434 FQEILQNIFKPLFEV 448
F ++L+N+F PLFEV
Sbjct: 347 FGDMLENVFLPLFEV 361
Score = 192 bits (489), Expect = 1e-51
Identities = 84/139 (60%), Positives = 104/139 (74%), Gaps = 7/139 (5%)
Query: 425 FKSNKLINNFQEILQNI------FKPLFEVDTHIHAASCMNQKHLLRFIKKTLKNHTDEV 478
F ++L+N E+ + F + +VDTHIHAA+ MNQKHLLRFIK LK DE
Sbjct: 143 FNLHELLNEMSELKEQKSVPHRDFYNVRKVDTHIHAAASMNQKHLLRFIKHKLKTEPDET 202
Query: 479 VTKDRTGQTMTLRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLRE 538
V +R G+ +TLR+VF S++L YDL+VD LDVHADRNTFHRFDKFN KYNP+GESRLRE
Sbjct: 203 VI-ERDGKKLTLREVFDSLHLDPYDLSVDTLDVHADRNTFHRFDKFNLKYNPVGESRLRE 261
Query: 539 VFLKTDNYLGGTYFARIIK 557
+FLKTDNY+GG YFA ++K
Sbjct: 262 IFLKTDNYIGGKYFAELVK 280
Score = 46.8 bits (111), Expect = 6e-05
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 942 DLPDVPNAGHVFEFYNGVYHVYKNQEALAKGEAMNFPYPDLAEFVTNMHRLCAMIADGPL 1001
D P + G++ + GV VY N L + E P L + +M L A+I+DGP
Sbjct: 70 DAPPI-ELGYLVRMHGGVLFVYDNDTMLERQEPHFLVPPTLETYYVDMEHLLALISDGPT 128
>gnl|CDD|178613 PLN03055, PLN03055, AMP deaminase; Provisional.
Length = 602
Score = 522 bits (1346), Expect = e-175
Identities = 237/406 (58%), Positives = 292/406 (71%), Gaps = 23/406 (5%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTH+H +SCMNQKHLLRFIK L+ DEVV R G+ +TLR+VF+S++LT
Sbjct: 145 FYNVRKVDTHVHHSSCMNQKHLLRFIKSKLRKEPDEVVIF-RDGKYLTLREVFESLDLTG 203
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
YDL VD+LDVHAD+NTFHRFDKFN KYNP G+SRLRE+FLK DN + G + A + KEV +
Sbjct: 204 YDLNVDLLDVHADKNTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKEVFS 263
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
DLE SKYQ AE R+SIYG+ + EWD+LA+W + + +YS N+ WLIQ+PRLY+++K ++
Sbjct: 264 DLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNRLYSENVVWLIQLPRLYNVYKEMGIV 323
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPE-NPLFDADVLTPP 790
+FQ+IL NIFKPLFEVT D SSHP LH FL+ V+GFD VDDESKPE P + TP
Sbjct: 324 QSFQQILDNIFKPLFEVTVDPSSHPQLHVFLKMVVGFDMVDDESKPERRP--TKHMQTPE 381
Query: 791 QWNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKA---DALTSKFPNAQD 847
QW++ NP Y+Y+ YY YANL LN+ + +P A +A D L + F A +
Sbjct: 382 QWDIPFNPAYSYWAYYVYANLYTLNKLRESKGLNTIKFRPHAGEAGDIDHLAAAFLLAHN 441
Query: 848 IYDHEITIR---------------IAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDD 892
I H +R +AMSPLSNNSLFL+YHRNP P + ARGL VSLSTDD
Sbjct: 442 I-AHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFARGLNVSLSTDD 500
Query: 893 PLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGV 938
PLQ H TKEPL+EEYSIAAQVWKLSSCD+CE+ARNSVL SGFPH
Sbjct: 501 PLQIHLTKEPLVEEYSIAAQVWKLSSCDLCEIARNSVLQSGFPHAS 546
Score = 192 bits (489), Expect = 9e-52
Identities = 76/126 (60%), Positives = 101/126 (80%)
Query: 323 SDRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAE 382
+D+NTFHRFDKFN KYNP G+SRLRE+FLK DN + G + A + KEV +DLE SKYQ AE
Sbjct: 215 ADKNTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAE 274
Query: 383 LRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIF 442
R+SIYG+ + EWD+LA+W + + +YS N+ WLIQ+PRLY+++K ++ +FQ+IL NIF
Sbjct: 275 YRISIYGRKQSEWDQLASWIVNNRLYSENVVWLIQLPRLYNVYKEMGIVQSFQQILDNIF 334
Query: 443 KPLFEV 448
KPLFEV
Sbjct: 335 KPLFEV 340
Score = 170 bits (432), Expect = 2e-44
Identities = 72/111 (64%), Positives = 89/111 (80%), Gaps = 1/111 (0%)
Query: 447 EVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTV 506
+VDTH+H +SCMNQKHLLRFIK L+ DEVV R G+ +TLR+VF+S++LT YDL V
Sbjct: 150 KVDTHVHHSSCMNQKHLLRFIKSKLRKEPDEVVIF-RDGKYLTLREVFESLDLTGYDLNV 208
Query: 507 DMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIK 557
D+LDVHAD+NTFHRFDKFN KYNP G+SRLRE+FLK DN + G + A + K
Sbjct: 209 DLLDVHADKNTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTK 259
Score = 47.9 bits (114), Expect = 3e-05
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 947 PNAGHVFEFYNGVYHVYKNQEALAKGEAMNFPYPDLAEFVTNMHRLCAMIADGP 1000
P + HVF +GV HVY +A K E FP PD F T+MHR+ +++ G
Sbjct: 57 PPSQHVFRMVDGVMHVYAPDDA--KEEL--FPVPDATTFFTDMHRILRIVSLGN 106
>gnl|CDD|215411 PLN02768, PLN02768, AMP deaminase.
Length = 835
Score = 506 bits (1304), Expect = e-165
Identities = 225/404 (55%), Positives = 281/404 (69%), Gaps = 23/404 (5%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTH+H ++CMNQKHLLRFIK L+ DEVV R G +TL++VF+S++LT
Sbjct: 378 FYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIF-RDGTYLTLKEVFESLDLTG 436
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + A + K+V +
Sbjct: 437 YDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFS 496
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
DLE SKYQ AE R+SIYG+ + EWD+LA+W + + +YS N+ WLIQ+PRLY+++K ++
Sbjct: 497 DLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNVYKEMGIV 556
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPE-NPLFDADVLTPP 790
+FQ IL NIF PLFEVT D SHP LH FL+ V+G D VDDESKPE P + TP
Sbjct: 557 TSFQNILDNIFIPLFEVTVDPDSHPQLHVFLKQVVGLDLVDDESKPERRP--TKHMPTPA 614
Query: 791 QWNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKA---DALTSKFPNAQD 847
QW NP ++YY YY YANL LN+ + +P + +A D L + F +
Sbjct: 615 QWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTCHN 674
Query: 848 IYDHEITIR---------------IAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDD 892
I H I +R +AMSPLSNNSLFL+YHRNP P + RGL VSLSTDD
Sbjct: 675 I-AHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDD 733
Query: 893 PLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPH 936
PLQ H TKEPL+EEYSIAA VWKLSSCD+CE+ARNSV SGF H
Sbjct: 734 PLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSH 777
Score = 186 bits (473), Expect = 2e-48
Identities = 73/126 (57%), Positives = 99/126 (78%)
Query: 323 SDRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAE 382
+D++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + A + K+V +DLE SKYQ AE
Sbjct: 448 ADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAE 507
Query: 383 LRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIF 442
R+SIYG+ + EWD+LA+W + + +YS N+ WLIQ+PRLY+++K ++ +FQ IL NIF
Sbjct: 508 YRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNVYKEMGIVTSFQNILDNIF 567
Query: 443 KPLFEV 448
PLFEV
Sbjct: 568 IPLFEV 573
Score = 167 bits (425), Expect = 1e-42
Identities = 69/111 (62%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
Query: 447 EVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTV 506
+VDTH+H ++CMNQKHLLRFIK L+ DEVV R G +TL++VF+S++LT YDL V
Sbjct: 383 KVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIF-RDGTYLTLKEVFESLDLTGYDLNV 441
Query: 507 DMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIK 557
D+LDVHAD++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + A + K
Sbjct: 442 DLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTK 492
Score = 36.4 bits (84), Expect = 0.083
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 951 HVFEFYNGVYHVYKNQEALAKGEAMNFPYPDLAEFVTNMHRLCAMIADG 999
H FE +GV HVY N+++ + FP D F T++H + +IA G
Sbjct: 294 HYFEMQDGVVHVYANKDSKEE----LFPVADATTFFTDLHHILRVIAAG 338
>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
Length = 1453
Score = 394 bits (1014), Expect = e-118
Identities = 180/403 (44%), Positives = 237/403 (58%), Gaps = 24/403 (5%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTHIH A+ M + LL F+ L D++ K R +TL Q+F +T
Sbjct: 841 FYQAYKVDTHIHMAAGMTARQLLEFVVDKLLESGDDIAFK-RGDHIVTLGQLFSKYGITP 899
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
+LTVD L+V AD F RFD FN+KYNP+ LR + LKTDN++ G YFA +IK+V
Sbjct: 900 -NLTVDQLNVQADHTLFERFDNFNSKYNPMENPDLRSLLLKTDNFMKGRYFAELIKDVFE 958
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
++ AE RLSIYG + EWD LA W + S + +W+IQ+PR+Y +F++ +I
Sbjct: 959 QYSRDRFTYAENRLSIYGINVKEWDDLAHWFDTHGMASKHNKWMIQVPRVYKVFRAQNVI 1018
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQ 791
+F + L NIF+PL+E + S HP H FL +V GFDSVD+E+ + P D ++P
Sbjct: 1019 GSFGQYLDNIFQPLWEASLHPSKHPKFHYFLNHVSGFDSVDNEATIDLPFTD---VSPWA 1075
Query: 792 WNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYK---ADALTSKFPNAQDI 848
W ENP Y YY YY YAN+ LN+ R L+P + D L F A I
Sbjct: 1076 WTSVENPPYNYYLYYLYANIRTLNEFRASRGFSTFALRPHCGESGSMDHLYGAFLCANSI 1135
Query: 849 YDHEITIR---------------IAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDP 893
H I +R + +SPLSNN+LFL + NP P + RGL VSLSTDDP
Sbjct: 1136 -CHGINLRNDPPMQYLYYLAQIGLHVSPLSNNALFLAFLENPFPVFFHRGLNVSLSTDDP 1194
Query: 894 LQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPH 936
L FH T+EPL+EEYSIAA+VW LS D+CE+ARNSVL SGF
Sbjct: 1195 LMFHQTQEPLIEEYSIAARVWGLSLNDLCEIARNSVLQSGFDA 1237
Score = 180 bits (457), Expect = 6e-46
Identities = 131/425 (30%), Positives = 191/425 (44%), Gaps = 40/425 (9%)
Query: 542 KTDNYLGGTYFARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLR 601
+ D Y G F+ KVD + ++ ++ + LL F+ T + + R G TLR
Sbjct: 192 RADLYKAGGVFSPCTKVDNAVLLSTSVDAQELLEFVVTTYR-EQPRAPLRLRDGSNSTLR 250
Query: 602 QVFQSMNLTSYD-LTVDMLDVHA--DRNTFHRFDKFNAKYNPIGE--SRLREVFLKTDNY 656
+ ++ + LTV+ L RN + ++D F+AK NP+G + LR+ FL
Sbjct: 251 EYLEAHGVRDPRELTVEGLGWQPTKYRNKYGQYDLFDAK-NPMGALGAELRQSFLSLHGN 309
Query: 657 LGGTYFARIIKEVAADLEESKY--QNAELRLSIYGKSEDEWDKLATWAIESNV--YSNNI 712
L G ++++ E K Q E L +YG +E LA W +S N
Sbjct: 310 LCG----KLLRRELERREYQKQQPQATEYSLPLYGHHPEELTDLAEWVRRQGFGPFSRN- 364
Query: 713 RWLIQI--PRLYDIFKSNKLINNFQEILQNIFKPLFEVT--NDSSSHPHLHKFLQYVIGF 768
RW++ I L F+ Q+ L NIF PLF+ T + L V G
Sbjct: 365 RWILAISFKELGP-FQVPSSCTTVQDQLDNIFLPLFKATLCPSDPQWSDVAWLLCQVGGL 423
Query: 769 DSVDDESKPENPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNL 828
+ + + FD P Q YY YY YANL VLN R+ L
Sbjct: 424 -QILTHAVVRSEDFDETAPDPDQVPYTAKCSDLYYFYYVYANLAVLNSLRKRKGLNTLQL 482
Query: 829 QPGAYKA---DALTSKF------PNAQDIYDHEIT--------IRIAMSPLSNNSL-FLN 870
+P KA D L S + A I D+ + + + +SPL +++L
Sbjct: 483 RPSGEKAPAYDQLISSYLLGDVITRATSIADYPVLQYLCGLHRVGLTVSPLRDHALSITA 542
Query: 871 YHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVL 930
Y +PLP++L R L VS+ST DPL FH +PL+EEY+ A +++ LS D ELARNSVL
Sbjct: 543 YFDHPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEYATAMKLFSLSPLDTTELARNSVL 602
Query: 931 MSGFP 935
S FP
Sbjct: 603 NSSFP 607
Score = 143 bits (361), Expect = 2e-34
Identities = 67/165 (40%), Positives = 98/165 (59%), Gaps = 6/165 (3%)
Query: 291 DKHFKPSDNDSSTGQVAPLWRYKTISNLS----NEKSDRNTFHRFDKFNAKYNPIGESRL 346
D FK D+ + GQ+ +Y NL+ N ++D F RFD FN+KYNP+ L
Sbjct: 876 DIAFKRGDHIVTLGQL--FSKYGITPNLTVDQLNVQADHTLFERFDNFNSKYNPMENPDL 933
Query: 347 REVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESN 406
R + LKTDN++ G YFA +IK+V ++ AE RLSIYG + EWD LA W
Sbjct: 934 RSLLLKTDNFMKGRYFAELIKDVFEQYSRDRFTYAENRLSIYGINVKEWDDLAHWFDTHG 993
Query: 407 VYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFEVDTH 451
+ S + +W+IQ+PR+Y +F++ +I +F + L NIF+PL+E H
Sbjct: 994 MASKHNKWMIQVPRVYKVFRAQNVIGSFGQYLDNIFQPLWEASLH 1038
Score = 112 bits (281), Expect = 5e-25
Identities = 51/110 (46%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 448 VDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVD 507
VDTHIH A+ M + LL F+ L D++ K R +TL Q+F +T +LTVD
Sbjct: 847 VDTHIHMAAGMTARQLLEFVVDKLLESGDDIAFK-RGDHIVTLGQLFSKYGITP-NLTVD 904
Query: 508 MLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIK 557
L+V AD F RFD FN+KYNP+ LR + LKTDN++ G YFA +IK
Sbjct: 905 QLNVQADHTLFERFDNFNSKYNPMENPDLRSLLLKTDNFMKGRYFAELIK 954
Score = 48.3 bits (115), Expect = 2e-05
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 324 DRNTFHRFDKFNAKYNPIGE--SRLREVFLKTDNYLGGTYFARIIKEVAADLEESKY--Q 379
RN + ++D F+AK NP+G + LR+ FL L G ++++ E K Q
Sbjct: 276 YRNKYGQYDLFDAK-NPMGALGAELRQSFLSLHGNLCG----KLLRRELERREYQKQQPQ 330
Query: 380 NAELRLSIYGKSEDEWDKLATWAIESNV--YSNNIRWLIQI--PRLYDIFKSNKLINNFQ 435
E L +YG +E LA W +S N RW++ I L F+ Q
Sbjct: 331 ATEYSLPLYGHHPEELTDLAEWVRRQGFGPFSRN-RWILAISFKELGP-FQVPSSCTTVQ 388
Query: 436 EILQNIFKPLF 446
+ L NIF PLF
Sbjct: 389 DQLDNIFLPLF 399
Score = 47.5 bits (113), Expect = 4e-05
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 440 NIFKPLFEVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNL 499
+F P +VD + ++ ++ + LL F+ T + + R G TLR+ ++ +
Sbjct: 200 GVFSPCTKVDNAVLLSTSVDAQELLEFVVTTYR-EQPRAPLRLRDGSNSTLREYLEAHGV 258
Query: 500 TSYD-LTVDMLDVHA--DRNTFHRFDKFNAKYNPIGE--SRLREVFLKTDNYLGGTYFAR 554
LTV+ L RN + ++D F+AK NP+G + LR+ FL L G R
Sbjct: 259 RDPRELTVEGLGWQPTKYRNKYGQYDLFDAK-NPMGALGAELRQSFLSLHGNLCGKLLRR 317
>gnl|CDD|216216 pfam00962, A_deaminase, Adenosine/AMP deaminase.
Length = 328
Score = 197 bits (502), Expect = 4e-56
Identities = 92/307 (29%), Positives = 122/307 (39%), Gaps = 43/307 (14%)
Query: 664 RIIKEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYD 723
R+ K L E + +++Y K L I+ V +RW Q PR Y
Sbjct: 22 RLAKRKGIILPEKVDKEVGKLVTLYEKFRSLKLFLYDLEIDVLV----LRWTAQDPRRYA 77
Query: 724 IFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFD 783
+ + L+N F PLFE T D P LH L GFD + E L
Sbjct: 78 YEAAEDFAADGVVYLENRFDPLFEATLDGQ-SPELHVVLAVKDGFDEGEREFGIGARLIL 136
Query: 784 ADVL-TPPQWNLEENPCYAYYQYYTYANLTVLNQSTG---------RRSRRETNLQ--PG 831
+ P +W E YY+ Y N+ + G + L P
Sbjct: 137 CKIRHKPEEWLEEIAELATYYRDYGVVNIDLAGDEIGEPLPDFLYAFAEAGKYGLHLTPH 196
Query: 832 AYKADALTS--------------------KFPNAQDIYDHEITIRIAMSPLSNNSL--FL 869
A +A S K P + E I I + PLSN +L L
Sbjct: 197 AGEAGGPQSVVDAFLLLGAERIGHGIRLAKDPVLLYLL-AERQIPIEVCPLSNVALGAVL 255
Query: 870 NYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSV 929
+Y ++PL + G+ VSLSTDDPLQF T L EEY+IAAQ + L + D+CELARNSV
Sbjct: 256 DYAKHPLKTFFDAGVPVSLSTDDPLQFGAT---LSEEYTIAAQDFGLDTEDLCELARNSV 312
Query: 930 LMSGFPH 936
S
Sbjct: 313 KSSFLSD 319
Score = 68.5 bits (168), Expect = 3e-12
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 557 KVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTV 616
KVD H+H M LLR K+ ++V + TL + F+S+ L YDL +
Sbjct: 4 KVDLHLHLDGSMRPDTLLRLAKRKGIILPEKVDKEVGKLV--TLYEKFRSLKLFLYDLEI 61
Query: 617 DMLDVHADRNTFHRFDKFNAK 637
D+L + R+ A+
Sbjct: 62 DVLVLRWTAQDPRRYAYEAAE 82
Score = 65.8 bits (161), Expect = 2e-11
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 448 VDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVD 507
VD H+H M LLR K+ ++V + TL + F+S+ L YDL +D
Sbjct: 5 VDLHLHLDGSMRPDTLLRLAKRKGIILPEKVDKEVGKLV--TLYEKFRSLKLFLYDLEID 62
Query: 508 MLDVHADRNTFHRFDKFNAK 527
+L + R+ A+
Sbjct: 63 VLVLRWTAQDPRRYAYEAAE 82
Score = 46.2 bits (110), Expect = 5e-05
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 364 RIIKEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYD 423
R+ K L E + +++Y K L I+ V +RW Q PR Y
Sbjct: 22 RLAKRKGIILPEKVDKEVGKLVTLYEKFRSLKLFLYDLEIDVLV----LRWTAQDPRRYA 77
Query: 424 IFKSNKLINNFQEILQNIFKPLFEVDTHI 452
+ + L+N F PLFE
Sbjct: 78 YEAAEDFAADGVVYLENRFDPLFEATLDG 106
>gnl|CDD|224729 COG1816, Add, Adenosine deaminase [Nucleotide transport and
metabolism].
Length = 345
Score = 180 bits (459), Expect = 4e-50
Identities = 78/341 (22%), Positives = 129/341 (37%), Gaps = 33/341 (9%)
Query: 613 DLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAAD 672
+ + L H + HR + + + + E R T + E
Sbjct: 1 LMDILELIRHLPKAELHRHLEGSLRPELVLELARRYGIALPPAEFDETILEELRAEYNKF 60
Query: 673 LEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLIN 732
+ ++ R + ++E+++ +LA +E N + I+ Y K ++
Sbjct: 61 NDLQEFLEKYYRGASVLRTEEDFYRLAYEYLEDAAADNVVYAEIRFDP-YLHTKRGLSVD 119
Query: 733 NFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQW 792
E L F+P D H L L +GF+S D+E + D V
Sbjct: 120 TVVEGLIAGFRPA---ERDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVT----- 171
Query: 793 NLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGA-YKADALTSKFPNAQDIYDH 851
+ + Y + +L L + G + G DAL A+ I H
Sbjct: 172 GVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDAL--DLLGAERI-GH 228
Query: 852 EI---------------TIRIAMSPLSN--NSLFLNYHRNPLPEYLARGLVVSLSTDDPL 894
I I + + PLSN + + ++P + G+ VSL+TDDPL
Sbjct: 229 GIRAIEDPELLYRLAERQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPL 288
Query: 895 QFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFP 935
F PL+EEY +AAQ++ LS D+CELARN+V +
Sbjct: 289 YFGT---PLIEEYLVAAQIYGLSREDLCELARNAVEAAFIS 326
Score = 87.4 bits (217), Expect = 2e-18
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)
Query: 327 TFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLS 386
HR + + + + E R T + E + ++ R +
Sbjct: 15 ELHRHLEGSLRPELVLELARRYGIALPPAEFDETILEELRAEYNKFNDLQEFLEKYYRGA 74
Query: 387 IYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIFKPLF 446
++E+++ +LA +E N + I+ Y K ++ E L F+P
Sbjct: 75 SVLRTEEDFYRLAYEYLEDAAADNVVYAEIRFDP-YLHTKRGLSVDTVVEGLIAGFRPA- 132
Query: 447 EVDTHIHA 454
E D IH+
Sbjct: 133 ERDFGIHS 140
Score = 36.9 bits (86), Expect = 0.042
Identities = 7/53 (13%), Positives = 15/53 (28%)
Query: 503 DLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARI 555
+ + L H + HR + + + + E R T +
Sbjct: 1 LMDILELIRHLPKAELHRHLEGSLRPELVLELARRYGIALPPAEFDETILEEL 53
>gnl|CDD|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase. Adenosine deaminases
(ADAs) are present in pro- and eukaryotic organisms and
catalyze the zinc dependent irreversible deamination of
adenosine nucleosides to inosine nucleosides and
ammonia. The eukaryotic AMP deaminase catalyzes a
similar reaction leading to the hydrolytic removal of an
amino group at the 6 position of the adenine nucleotide
ring, a branch point in the adenylate catabolic pathway.
Length = 305
Score = 166 bits (422), Expect = 1e-45
Identities = 90/314 (28%), Positives = 118/314 (37%), Gaps = 60/314 (19%)
Query: 641 IGESRLREVFLKTDNYL-GGTYFARIIKEVAADLEESKYQNAELRLSIYGKS-EDEWDKL 698
+ + E FL N L G AR +KEV + E Q ELR + E K
Sbjct: 22 LIKKEFFEKFLLVHNLLQKGEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKE 81
Query: 699 ATWAIESNVYSNNIRWL--IQIPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHP 756
W + S +W I++ + + + P + +S
Sbjct: 82 QYWLLVIEGISEAKQWFPPIKVRLILSVDRRG---------------PYVQNYLVASEIL 126
Query: 757 HLHKFL-QYVIGFDSVDDESKPENPLFDADVLTPPQWNLEENPCYAYYQYYTYAN----L 811
L KFL YV+G D V DESK ENPL +Y YY YA L
Sbjct: 127 ELAKFLSNYVVGIDLVGDESKGENPL------------------RDFYSYYEYARRLGLL 168
Query: 812 TVLNQS--TGRRSRRETNLQPGAYKAD------ALTSKFPNAQDIYDHEITIRIAMSPLS 863
+ TG R L D L + I I + P S
Sbjct: 169 GLTLHCGETGNREELLQALL---LLPDRIGHGIFLLKHPELIYLVKLRNIPI--EVCPTS 223
Query: 864 NNSLFL--NYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDM 921
N L +Y ++P + GL VSLSTDDP F L EEYS+AA+ + L+ D+
Sbjct: 224 NVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGT---SLSEEYSLAAKTFGLTFEDL 280
Query: 922 CELARNSVLMSGFP 935
CEL RNSVL S
Sbjct: 281 CELNRNSVLSSFAK 294
Score = 64.3 bits (157), Expect = 6e-11
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 341 IGESRLREVFLKTDNYL-GGTYFARIIKEVAADLEESKYQNAELRLSIYGKS-EDEWDKL 398
+ + E FL N L G AR +KEV + E Q ELR + E K
Sbjct: 22 LIKKEFFEKFLLVHNLLQKGEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKE 81
Query: 399 ATWAIESNVYSNNIRWL--IQIPRLYDI 424
W + S +W I++ + +
Sbjct: 82 QYWLLVIEGISEAKQWFPPIKVRLILSV 109
Score = 37.3 bits (87), Expect = 0.029
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 557 KVDTHIHAASCMNQKHLLRFIKKTL 581
KV+ H H + ++ + LL IKK
Sbjct: 3 KVELHAHLSGSISPETLLELIKKEF 27
Score = 34.6 bits (80), Expect = 0.20
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 448 VDTHIHAASCMNQKHLLRFIKKTL 471
V+ H H + ++ + LL IKK
Sbjct: 4 VELHAHLSGSISPETLLELIKKEF 27
>gnl|CDD|236480 PRK09358, PRK09358, adenosine deaminase; Provisional.
Length = 340
Score = 57.1 bits (139), Expect = 2e-08
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 855 IRIAMSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQ 912
I + + P SN + +PL L G+ V+++TDDPL F T L EEY A+
Sbjct: 244 IPLEVCPTSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVFGTT---LTEEYEALAE 300
Query: 913 VWKLSSCDMCELARNSVLMS 932
+ LS D+ +LARN++ +
Sbjct: 301 AFGLSDEDLAQLARNALEAA 320
>gnl|CDD|238645 cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc
dependent enzyme which catalyzes the irreversible
hydrolytic deamination of both adenosine, as well as
desoxyadenosine, to ammonia and inosine or
desoxyinosine, respectively. ADA plays an important role
in the purine pathway. Low, as well as high levels of
ADA activity have been linked to several diseases.
Length = 325
Score = 49.5 bits (119), Expect = 4e-06
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 859 MSPLSNNSLFL----NYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVW 914
+ P SN + + +PL E L G+ V+++TDDP F L +EY + A+ +
Sbjct: 239 VCPTSN--VQTGAVKSLAEHPLRELLDAGVKVTINTDDPTVFGTY---LTDEYELLAEAF 293
Query: 915 KLSSCDMCELARNSVLMS 932
L+ ++ +LARN+V S
Sbjct: 294 GLTEEELKKLARNAVEAS 311
>gnl|CDD|233410 TIGR01430, aden_deam, adenosine deaminase. This family includes
the experimentally verified adenosine deaminases of
mammals and E. coli. Other members of this family are
predicted also to be adenosine deaminase, an enzyme of
nucleotide degradation. This family is distantly related
to AMP deaminase.
Length = 324
Score = 47.4 bits (113), Expect = 2e-05
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 848 IYDHEITIRIA-------MSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHF 898
+ D E+ R+A + P SN +L + +PL +L G+ V+L++DDP F
Sbjct: 220 LEDPELLKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSDDPAYFGS 279
Query: 899 TKEPLMEEYSIAAQVWKLSSCDMCELARNSV 929
L EEY IAA+ L+ ++ +LARN++
Sbjct: 280 Y---LTEEYEIAAKHAGLTEEELKQLARNAL 307
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 45.0 bits (106), Expect = 1e-04
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 855 IRIAMSPLSNNSLFLN-YHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQV 913
+ + + PLSN L + L L G+ V+L TD P H L+ + +V
Sbjct: 197 VSLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTDGP--PHPLGTDLLALLRLLLKV 254
Query: 914 WKL--SSCDMCELA 925
+L S + LA
Sbjct: 255 LRLGLSLEEALRLA 268
>gnl|CDD|238646 cd01321, ADGF, Adenosine deaminase-related growth factors (ADGF), a
novel family of secreted growth-factors with sequence
similarty to adenosine deaminase.
Length = 345
Score = 38.0 bits (89), Expect = 0.019
Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 39/195 (20%)
Query: 759 HKFLQYVIGFDSV--DDESKPENPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLNQ 816
KF ++ GFD V +D +P L E P ++ +A T
Sbjct: 157 KKFPDFIAGFDLVGQEDAGRPLLDF--LPQLLWFPKQCAEIP------FFFHAGET-NGD 207
Query: 817 STGRRSRRETNLQPGAYKADAL---TSKFPNAQDIYDHEITIR--------IAMSPLSN- 864
T + NL DAL T + + + H + + I + P+SN
Sbjct: 208 GT----ETDENL------VDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEVCPISNQ 257
Query: 865 -NSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMC- 922
L + +P LARG+ V +S+DDP + L ++ A + +
Sbjct: 258 VLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAK--GLSHDFYQAFMGLAPADAGLRG 315
Query: 923 --ELARNSVLMSGFP 935
+LA NS+ S
Sbjct: 316 LKQLAENSIRYSALS 330
>gnl|CDD|132375 TIGR03332, salvage_mtnW, 2,3-diketo-5-methylthiopentyl-1-phosphate
enolase. Members of this family are the methionine
salvage pathway enzyme
2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a
homolog of RuBisCO. This protein family seems restricted
to Bacillus subtilis and close relatives, where two
separate proteins carry the enolase and phosphatase
activities that in other species occur in a single
protein, MtnC (TIGR01691) [Amino acid biosynthesis,
Aspartate family, Central intermediary metabolism,
Sulfur metabolism].
Length = 407
Score = 32.9 bits (75), Expect = 0.81
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 45 ELPNEISAPYEVPQFPIEQIEKKLAIQQR---MS---QLLAKDLEDRKSQYEPSLVPGVE 98
E +E + P+F I+ I K L + +R MS ++ +DL K Q + GV+
Sbjct: 111 EFSDEFKRHFPGPKFGIDGIRKLLGVHERPLLMSIFKGMIGRDLGYLKEQLRQQALGGVD 170
Query: 99 DIETTAVIDEHDFVPHFQRVAISGEDNTGVPAEDLEQASRLLVEALHIRDRYMDI 153
++ ++ E P +R+ G++ V E EQ + A+++ R D+
Sbjct: 171 LVKDDEILFETGLAPFEKRIT-EGKE---VLQEVYEQTGHKTLYAVNLTGRTFDL 221
>gnl|CDD|217892 pfam04100, Vps53_N, Vps53-like, N-terminal. Vps53 complexes with
Vps52 and Vps54 to form a multi- subunit complex
involved in regulating membrane trafficking events.
Length = 375
Score = 32.8 bits (75), Expect = 0.89
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 414 WLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFEVDTHIHAASCMNQKHLLRFIKKTLKN 473
WL +I R Y FK +L+ +F+E IF + V + C + L I
Sbjct: 242 WLDKIDRRYAWFK--RLLRDFEEKYGPIFPADWHVAERLTVEFCHVTRKQLAKILVRRDK 299
Query: 474 HTD 476
D
Sbjct: 300 ELD 302
Score = 30.1 bits (68), Expect = 6.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 714 WLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFEV 748
WL +I R Y FK +L+ +F+E IF + V
Sbjct: 242 WLDKIDRRYAWFK--RLLRDFEEKYGPIFPADWHV 274
>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit,
proteobacterial. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 735
Score = 32.2 bits (73), Expect = 1.7
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 63 QIEKKLAIQQRMSQLLAKDLEDRKSQYEPSLVPGVEDIETTAVIDEHDFVP 113
+EK L ++ ++QL+ K+++ ++Y + +E+ E + E D +P
Sbjct: 442 ILEKILKSERELNQLVKKEIQADATKYGLARRSSLEEREEAKQVSEIDMIP 492
>gnl|CDD|232918 TIGR00321, dhys, deoxyhypusine synthase. Deoxyhypusine synthase is
responsible for the first step in creating hypusine.
Hypusine is a modified amino acid found in eukaryotes
and in archaea in their respective forms of initiation
factor 5A. Its presence is confirmed in archaeal genera
Pyrococcus (PMID:12761201), Sulfolobus, Halobacterium,
and Haloferax (PMID:10648545), but in an older report
was not detected in Methanococcus voltae (J Biol Chem
1987 Dec 5;262(34):16585-9). This family of apparent
orthologs has an unusual UPGMA difference tree, in which
the members from the archaea M. jannaschii and P.
horikoshii cluster with the known eukaryotic
deoxyhypusine synthases. Separated by a fairly deep
branch, although still strongly related, is a small
cluster of proteins from Methanobacterium
thermoautotrophicum and Archeoglobus fulgidus, the
latter of which has two [Protein fate, Protein
modification and repair].
Length = 301
Score = 31.6 bits (72), Expect = 2.1
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 718 IPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKF 761
I R+ D+F N+ F+E L IF + + + +
Sbjct: 112 INRIGDVFVPNENFEVFEEWLVEIFSEMLGEQPIITPSEFIDEI 155
Score = 30.8 bits (70), Expect = 3.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 418 IPRLYDIFKSNKLINNFQEILQNIFKPLFEVDTHI 452
I R+ D+F N+ F+E L IF + I
Sbjct: 112 INRIGDVFVPNENFEVFEEWLVEIFSEMLGEQPII 146
>gnl|CDD|236560 PRK09549, mtnW, 2,3-diketo-5-methylthiopentyl-1-phosphate enolase;
Reviewed.
Length = 407
Score = 31.5 bits (72), Expect = 2.6
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 45 ELPNEISAPYEVPQFPIEQIEKKLAIQQR---MS---QLLAKDLEDRKSQYEPSLVPGVE 98
+E+ + P+F I+ I L + R MS ++ +DL+ K Q + GV+
Sbjct: 106 TFSDELKRHFPGPKFGIDGIRNLLGVHDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVD 165
Query: 99 DIETTAVIDEHDFVPHFQRV 118
++ ++ E+ P +R+
Sbjct: 166 LVKDDEILFENALTPFEKRI 185
>gnl|CDD|188132 TIGR01344, malate_syn_A, malate synthase A. This model represents
plant malate synthase and one of two bacterial forms,
designated malate synthase A. The distantly related
malate synthase G is described by a separate model. This
enzyme and isocitrate lyase are the two characteristic
enzymes of the glyoxylate shunt. The shunt enables the
cell to use acetyl-CoA to generate increased levels of
TCA cycle intermediates for biosynthetic pathways such
as gluconeogenesis [Energy metabolism, TCA cycle].
Length = 511
Score = 30.9 bits (70), Expect = 3.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 445 LFEVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMT 489
L+E+ HI +C ++ FI KTL+N + V DR TMT
Sbjct: 240 LYELREHISGLNCGRWDYIFSFI-KTLRNLPE-FVLPDRDAVTMT 282
>gnl|CDD|177475 PHA02693, PHA02693, hypothetical protein; Provisional.
Length = 710
Score = 31.1 bits (70), Expect = 3.9
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 185 DKKTIADTDKHFKPSDNDSSTGQVAPLWRYKTISNLSNEKSVPAEDLEQASRLLVEALHI 244
DK I ++ + D+ ++ ++ W Y I + V + + QA R AL +
Sbjct: 183 DKGNIPPLNRALREVDDVATCARLVCEWPYFNIMKFLSPNMVASREFAQAVREGAMALCV 242
Query: 245 R----DRYMDIS---SQTFPQVTARFLREMDNVA---SLPHSTKIVHEDKKT-------I 287
R DR + IS S+ P+ F + + A S ST+ + T
Sbjct: 243 RPVGADRMVGISKSRSRRLPEEHVDFHYDESDTADSCSRSFSTQSTRSTRSTRSTRSGAE 302
Query: 288 ADTDKHFKPSDNDSSTGQVAPLWRYKTISNLSNEKSDRNT 327
DT D+D S +V PL R T ++ + S R++
Sbjct: 303 TDTTDPDLDPDDDESFDEVGPLTRRFTATSFAPRASVRSS 342
>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Members of this subgroup have a conserved MIDAS
motif, however, their biochemical function is not well
characterised.
Length = 152
Score = 29.6 bits (67), Expect = 3.9
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 358 GGTYFARIIKEVAADLEESKYQNAELRL---SIYGKSEDEWDKLATWAIESNVYSNNIRW 414
GGT + ++ +E + A++ L G DE +
Sbjct: 73 GGTDINKALRYALELIERRDPRKADIVLITDGYEGGVSDELLR---EVELKRSRVARFVA 129
Query: 415 LIQ 417
L
Sbjct: 130 LAL 132
Score = 29.6 bits (67), Expect = 3.9
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 658 GGTYFARIIKEVAADLEESKYQNAELRL---SIYGKSEDEWDKLATWAIESNVYSNNIRW 714
GGT + ++ +E + A++ L G DE +
Sbjct: 73 GGTDINKALRYALELIERRDPRKADIVLITDGYEGGVSDELLR---EVELKRSRVARFVA 129
Query: 715 LIQ 717
L
Sbjct: 130 LAL 132
>gnl|CDD|225250 COG2375, ViuB, Siderophore-interacting protein [Inorganic ion
transport and metabolism].
Length = 265
Score = 30.1 bits (68), Expect = 5.2
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 84 DRKSQYEPSLVPGVEDIETTAVIDEHDFVPHFQRVAISGEDNTGVPAEDL-EQASRLLV 141
++ + G E T V PH RV + GE G + +Q +L
Sbjct: 2 EQGLAGPQLVRLGPRLHEAT-VTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFF 59
>gnl|CDD|215249 PLN02454, PLN02454, triacylglycerol lipase.
Length = 414
Score = 29.8 bits (67), Expect = 8.0
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 331 FDKFNAKYNPI--GESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLS-- 386
+D FN N G SR Y ++F +++ E A+D E + + A R+S
Sbjct: 44 YDSFNNDQNSKYCGASR----------YGKSSFFDKVMLEAASDYEVAAFLYATARVSLP 93
Query: 387 ----IYGKSEDEWDKLATW 401
++ S + WD+ + W
Sbjct: 94 EAFLLHSMSRESWDRESNW 112
Score = 29.8 bits (67), Expect = 8.0
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 631 FDKFNAKYNPI--GESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLS-- 686
+D FN N G SR Y ++F +++ E A+D E + + A R+S
Sbjct: 44 YDSFNNDQNSKYCGASR----------YGKSSFFDKVMLEAASDYEVAAFLYATARVSLP 93
Query: 687 ----IYGKSEDEWDKLATW 701
++ S + WD+ + W
Sbjct: 94 EAFLLHSMSRESWDRESNW 112
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 29.7 bits (67), Expect = 8.2
Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 25/153 (16%)
Query: 30 GSSGNLLAGEELRIPELPNEISAPYEVPQFPIE------QIEKKLAIQQRMSQLLAKDLE 83
+ + + + S E P P E I A + +++ L E
Sbjct: 79 QDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYE 138
Query: 84 DRKSQYEPSLVPGVEDIETTAVIDEHDFVPHFQRVAISGEDNTGVPAEDLEQASRLLVEA 143
K+ E L+ VE++E+ + PA +LE+ L+ ++
Sbjct: 139 YPKTDEEKELLREVEELESRLATEPS-------------------PAPELEEQLALMEKS 179
Query: 144 LHIRDRYMDISSQTFPQVTARFLREMDNVASLP 176
+ +YM + P + +V +
Sbjct: 180 YELAAKYMPRGQERLPVAPESKKGKKPSVQPVR 212
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding domain.
Length = 261
Score = 29.5 bits (67), Expect = 8.8
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 35/95 (36%)
Query: 413 RWLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFE-VDTHIHAASCMNQKHLLRFIKKTL 471
R++ L ++F+ ++EI P+FE + + + K + RF
Sbjct: 6 RYIED--TLREVFERY----GYEEIDT----PVFEYTELFLRKSGDEVSKEMYRF----- 50
Query: 472 KNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTV 506
KD+ G+ + LR DLT
Sbjct: 51 ---------KDKGGRDLALR----------PDLTA 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,290,926
Number of extensions: 5097443
Number of successful extensions: 4692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4641
Number of HSP's successfully gapped: 69
Length of query: 1001
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 895
Effective length of database: 6,236,078
Effective search space: 5581289810
Effective search space used: 5581289810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.5 bits)