RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy47
(1001 letters)
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 492 bits (1267), Expect = e-162
Identities = 227/405 (56%), Positives = 277/405 (68%), Gaps = 25/405 (6%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTH+H ++CMNQKHLLRFIK L+ DEVV R G +TLR+VF+S++LT
Sbjct: 244 FYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIF-RDGTYLTLREVFESLDLTG 302
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + I K+V +
Sbjct: 303 YDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFS 362
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
DLE SKYQ AE R+SIYG+ EWD+LA+W + +++YS N+ WLIQ+PRLY+I+K ++
Sbjct: 363 DLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIV 422
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQ 791
+FQ IL NIF PLFE T D SHP LH FL+ V+GFD VDDESKPE + TP Q
Sbjct: 423 TSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERR-PTKHMPTPAQ 481
Query: 792 WNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQ----------PGAYKADALTS- 840
W NP ++YY YY YANL VLN+ R S+ T + A LT
Sbjct: 482 WTNAFNPAFSYYVYYCYANLYVLNK--LRESKGMTTITLRPHSGEAGDIDHLAATFLTCH 539
Query: 841 ---------KFPNAQDIYDHEITIRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTD 891
K P Q +Y +AMSPLSNNSLFL+YHRNP P + RGL VSLSTD
Sbjct: 540 SIAHGINLRKSPVLQYLYYLAQIG-LAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTD 598
Query: 892 DPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPH 936
DPLQ H TKEPL+EEYSIAA VWKLS+CD+CE+ARNSV SGF H
Sbjct: 599 DPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSH 643
Score = 206 bits (524), Expect = 6e-56
Identities = 74/138 (53%), Positives = 100/138 (72%), Gaps = 1/138 (0%)
Query: 314 TISNLSNEKSDRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADL 373
+ L + +D++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + I K+V +DL
Sbjct: 306 NVDLL-DVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDL 364
Query: 374 EESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINN 433
E SKYQ AE R+SIYG+ EWD+LA+W + +++YS N+ WLIQ+PRLY+I+K ++ +
Sbjct: 365 EASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTS 424
Query: 434 FQEILQNIFKPLFEVDTH 451
FQ IL NIF PLFE
Sbjct: 425 FQNILDNIFIPLFEATVD 442
Score = 177 bits (451), Expect = 1e-46
Identities = 75/139 (53%), Positives = 97/139 (69%), Gaps = 7/139 (5%)
Query: 425 FKSNKLINNFQEILQN------IFKPLFEVDTHIHAASCMNQKHLLRFIKKTLKNHTDEV 478
F + ++N +E L F + +VDTH+H ++CMNQKHLLRFIK L+ DEV
Sbjct: 221 FNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEV 280
Query: 479 VTKDRTGQTMTLRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLRE 538
V R G +TLR+VF+S++LT YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRLRE
Sbjct: 281 VIF-RDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 339
Query: 539 VFLKTDNYLGGTYFARIIK 557
+FLK DN + G + I K
Sbjct: 340 IFLKQDNLIQGRFLGEITK 358
Score = 68.6 bits (167), Expect = 7e-12
Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 15/179 (8%)
Query: 22 PKLASSYPGSSGNLLAGEELRIPELPNEISAPYEVPQFPIEQIEKKLAIQQRMSQLLAKD 81
PK + + ++ ++ + A Y E Q +A
Sbjct: 3 PKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDNEMPADANEEQI----SMAAS 58
Query: 82 LEDRKSQYEPSLVPGVEDIETTAVIDEHDFVPHFQRVAISGEDNTGVPAEDLEQASRLLV 141
R L D ++ + F R+ + E VP D +A + L
Sbjct: 59 SMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNVPLE----VPTSDEVEAYKCLQ 114
Query: 142 EALHIRDRYMDISSQTFPQVTARFLREMDNVASLPHSTKIVHEDKKTIADTDKHFKPSD 200
E L +R RY+ F + A + +E+ + S P +D F+ D
Sbjct: 115 ECLELRKRYV------FQETVAPWEKEVISDPSTPKPNTEPFAH-YPQGKSDHCFEMQD 166
Score = 59.7 bits (144), Expect = 3e-09
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 941 WDLPDVPNAGHVFEFYNGVYHVYKNQEALAKGEAMNFPYPDLAEFVTNMHRLCAMIADGP 1000
+ + H FE +GV HV+ N++A FP D F T++H + +IA G
Sbjct: 150 FAHYPQGKSDHCFEMQDGVVHVFANKDAKED----LFPVADATAFFTDLHHVLKVIAAGN 205
Query: 1001 L 1001
+
Sbjct: 206 I 206
Score = 43.5 bits (102), Expect = 3e-04
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 186 KKTIADTDKHFKPSDNDSSTGQVAPLWRYKTISNLSNEKSVPAEDLEQASRLLVEALHIR 245
+++ +P + + P N+ E VP D +A + L E L +R
Sbjct: 63 SHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNVPLE--VPTSDEVEAYKCLQECLELR 120
Query: 246 DRYMDISSQTFPQVTARFLREMDNVASLPHSTKIVHEDKKTIADTDKHFKPSD 298
RY+ F + A + +E+ + S P +D F+ D
Sbjct: 121 KRYV------FQETVAPWEKEVISDPSTPKPNTEPFAH-YPQGKSDHCFEMQD 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 87.6 bits (216), Expect = 1e-17
Identities = 89/670 (13%), Positives = 213/670 (31%), Gaps = 161/670 (24%)
Query: 81 DLEDRKSQYE-PSLVPGVEDIETTAVIDEHDF--VPHFQRVAISGED-NTGVPAEDLEQA 136
D E + QY+ ++ ED A +D D V + +S E+ + + ++D
Sbjct: 8 DFETGEHQYQYKDILSVFED----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 137 SRLLVEALHIRDRYMDISSQTFPQVTARFLREM--DNVASLPHSTKIVHEDKKTIADTDK 194
+ L L +S Q ++ +F+ E+ N L + I E ++ T
Sbjct: 64 TLRLFWTL--------LSKQE--EMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRM 111
Query: 195 HFKPSDNDSSTGQVAP---LWRYKTISNLSNE-------------------KSVPAEDLE 232
+ + D + QV + R + L K+ A D+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 233 QASRLLVEA------LHIR-----DRYMDISSQTFPQVTARFLREMDNVASLPHSTKIVH 281
+ ++ + L+++ + +++ + Q+ + D+ +++ +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 282 EDKKTIADTDKHFKPS----DNDSSTGQVAPLWRYKTISNLSNEKSDRNTFHRFDKFNAK 337
+ + + K ++ N + + ++ F+ + K
Sbjct: 232 AELRRLL-KSKPYENCLLVLLN---------VQ-------------NAKAWNAFN-LSCK 267
Query: 338 ----------YNPIGESRLREVFLKTDNYLGGT------YFARIIKEVAADLEESKYQNA 381
+ + + + L + + T + + DL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 382 ELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWL-IQIPRLYDIFKSNKLINNFQ-EILQ 439
RLSI +S + LATW W + +L I +S+ +N + +
Sbjct: 327 PRRLSIIAESIRDG--LATW----------DNWKHVNCDKLTTIIESS--LNVLEPAEYR 372
Query: 440 NIFKPL--FEVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSM 497
+F L F HI L +K+ VV K ++ +Q +
Sbjct: 373 KMFDRLSVFPPSAHIPT------ILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ-PKES 424
Query: 498 NLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKT-DNYLGGTYFARII 556
++ + +++ + HR YN ++ D Y ++ +
Sbjct: 425 TISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHL 481
Query: 557 KVDTHIHAASCMNQKHL-LRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLT 615
K H + L RF+++ +++ + T+++ +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDS------------------------TAWNAS 517
Query: 616 VDMLDVHADRNTFHRFDKFNAKYNPIGESRLREV--FL-KTDNYLGGTYFARIIKEVAAD 672
+L+ + + +P E + + FL K + L + + +++
Sbjct: 518 GSILNTLQQ---LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 673 LEESKYQNAE 682
+E+ ++ A
Sbjct: 575 EDEAIFEEAH 584
Score = 77.2 bits (189), Expect = 2e-14
Identities = 93/621 (14%), Positives = 183/621 (29%), Gaps = 184/621 (29%)
Query: 418 IPRLYDIFKSNKLINNFQEILQNIFKPLFEVDTHIHAASCMNQKHLL------------- 464
+ D F N + Q++ ++I E+D I + ++ L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 465 RFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKF 524
+F+++ L+ + +++ +T RQ SM Y D L N F K+
Sbjct: 81 KFVEEVLRINYKFLMSPIKT----EQRQ--PSMMTRMYIEQRDRL-----YNDNQVFAKY 129
Query: 525 N-AKYNPIGESRLREVF--LKTDNYL--------GGTYFA----RIIKVDTH-------I 562
N ++ P +LR+ L+ + G T+ A KV +
Sbjct: 130 NVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 563 HAASC-------MNQKHLLRFIKKTLKNHTDEVVT-KDRTGQTMT-LRQVFQSMNLTSYD 613
+ +C + LL I + +D K R LR++ +S +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 614 LTVDMLDVHADRNTFHRFDKFNAK----------YNPIGESRLREVFLKTDNYLGGT--- 660
L + +V + ++ F+ + K + + + + L + + T
Sbjct: 248 LVLL--NV-QNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDE 302
Query: 661 ---YFARIIKEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQ 717
+ + DL RLSI +S + LATW W
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG--LATW----------DNW--- 347
Query: 718 IPRLYDIFKSNKLINNFQEILQ-NIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESK 776
+ + K +I + +L+ ++ +F+ + +
Sbjct: 348 --KHVNCDKLTTIIESSLNVLEPAEYRKMFD---------------RLSV---------- 380
Query: 777 PENPLFDADVLTPPQ-----WN-------------------LEENPC---YAYYQYYTYA 809
F P W +E+ P + Y
Sbjct: 381 -----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 810 NLTVLNQSTGRRSRRETNLQPGAYKADALTSKFPNAQDIY------DHEITIRIAMSPLS 863
+ + N+ RS + P + +D L P D Y H I
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 864 NNSLFLNYH------RNPLPEYLARGLVVSLSTDDPLQF---HFTK-EPLMEEY------ 907
+FL++ R+ + A G +++ L+F + +P E
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYICDNDPKYERLVNAILD 550
Query: 908 ---SIAAQVWKLSSCDMCELA 925
I + D+ +A
Sbjct: 551 FLPKIEENLICSKYTDLLRIA 571
Score = 62.9 bits (152), Expect = 4e-10
Identities = 76/585 (12%), Positives = 165/585 (28%), Gaps = 187/585 (31%)
Query: 18 QFNGPKLASSYPGSSGNLLAG---EELRIPELP--------------NEISAPYEVPQFP 60
+F L +Y L E R P + N++ A Y V +
Sbjct: 81 KFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-- 133
Query: 61 IEQIEKKLAIQQRMSQL------------------LAKD-LEDRKSQYEPSLVPGV---- 97
++ L ++Q + +L +A D K Q + +
Sbjct: 134 ---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIFWLN 188
Query: 98 --EDIETTAVIDE-----HDFVPHFQRVAISGEDNTGVPAEDLEQA-SRLLVEALH---- 145
V++ + P++ + N + ++ RLL +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 146 --IRD-------RYMDISSQTFPQVTARFLREMDNVASLPHSTKIVHEDKK---TIADTD 193
+ + ++S + +T RF + D +++ +T I + T +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVK 304
Query: 194 KHF------KPSDNDSSTGQVAPL------------------WRYKTISNLSN--EKSVP 227
+P D P W++ L+ E S+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 228 AEDLEQASRLLVEALHIRDRYMDISSQTFP---QVTARFL---------REMDNVASLPH 275
LE A R + +S FP + L ++ V + H
Sbjct: 364 -NVLEPAE--------YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 276 STKIVHEDKK--TIADTDKHFKPSDNDSSTGQVAPLWRYKTISNLSNEKSDRNTFHRFDK 333
+V + K TI+ + + L + + HR
Sbjct: 413 KYSLVEKQPKESTISIPSIYLE----------------------LKVKLENEYALHR--S 448
Query: 334 FNAKYNPIGESRLREVFLKT-DNYLGGTYFARIIKEVAADLEESKYQNAELRLSIYGKSE 392
YN ++ D Y ++ +K + + L ++ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNI------EHPERMTLFRMVF--LD 499
Query: 393 DEW--DKLATWAIESNVYSNNIRWLIQIPRLYD--IFKSNKLINNFQEILQNIFKPLFEV 448
+ K+ + N + + L Q+ + Y I ++ ++ ++ I L ++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDND---PKYERLVNAILDFLPKI 555
Query: 449 DTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQV 493
+ ++ + + LLR L + + +QV
Sbjct: 556 EENLICSKYTD---LLRIA---LMAEDEAIF-------EEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 1e-11
Identities = 91/571 (15%), Positives = 157/571 (27%), Gaps = 216/571 (37%)
Query: 534 SRLREVFLK-----TDNYLGGTYFARIIKVDTHIHAASCMNQKHLL-RFIKKTLKNHTDE 587
S+L+E F K T+ + D A L+ +F+ +
Sbjct: 31 SQLQEQFNKILPEPTEGFAAD---------DEPTTPA------ELVGKFL-----GYVSS 70
Query: 588 VVTKDRTGQTMT-LRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRL 646
+V + GQ L Y L + D+HA AK ++ L
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFE-NCY-LEGN--DIHA----------LAAKLLQENDTTL 116
Query: 647 REVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAEL-------RLSIY------GKSED 693
+ NY ARI A K N+ L + G ++D
Sbjct: 117 VKTKELIKNY----ITARI----MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 694 EWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSS 753
+++L LY + L+ + + L T D+
Sbjct: 169 YFEELRD--------------------LYQTYHV--LVGDLIKFSAETLSELIRTTLDAE 206
Query: 754 SHPHLHKFLQYVIGFDSV----DDESKPENPLFDADVLT--PPQWNLEENPCYAYYQYYT 807
+ G + + + + P D D L P P Q
Sbjct: 207 KV--------FTQGLNILEWLENPSNTP-----DKDYLLSIPISC-----PLIGVIQLAH 248
Query: 808 YANLTVLNQSTGRRSRRETNLQPGAYKADALTSKFPNAQDIYDHEIT-IRIAMSPLSNNS 866
Y + + PG + L ++Q + +T + IA + S S
Sbjct: 249 YVV-----------TAKLLGFTPGELR-SYLKGATGHSQGL----VTAVAIAETD-SWES 291
Query: 867 LFLN------------------YHRNPLP-----EYLARG-------LVVSLSTDDPLQF 896
F++ Y LP + L L +S T + +Q
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 897 HFTKE----PLMEEYSIAAQVWKLSSCDMCEL---ARNSVLMSGFP---HGV-------- 938
+ K P ++ I+ L A+N V+ SG P +G+
Sbjct: 352 YVNKTNSHLPAGKQVEIS-------------LVNGAKNLVV-SGPPQSLYGLNLTLRKAK 397
Query: 939 --AGWDLPDVPNAGHVFEFYNGV------YH-VY------------KNQEALAKGEAMNF 977
+G D +P + +F N +H + +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 978 P-YP-----DLAEFVTNM-HRLCAMIADGPL 1001
P Y DL ++ R+ I P+
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 67.4 bits (164), Expect = 2e-11
Identities = 75/470 (15%), Positives = 136/470 (28%), Gaps = 184/470 (39%)
Query: 18 QFNGPKLASSYPGSSGNLLAGEELRIPELPNEISAPYE--VPQFPIEQIEKKLAIQQRMS 75
F G G++ + EELR ++ Y V I+ + L
Sbjct: 159 IFGGQ-------GNTDDYF--EELR------DLYQTYHVLVGDL-IKFSAETL------- 195
Query: 76 QLLAKDLEDRKSQY-----------EPSLVPGVEDIETTAV------------------- 105
L + D + + PS P + + + +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 106 --IDEHDFVPHFQR-----------VAISGEDNTGVPAEDLEQASRLLVEAL-HIRDRYM 151
+ + + VAI+ D+ E + R + L I R
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDS----WESFFVSVRKAITVLFFIGVR-- 309
Query: 152 DISSQTFPQ--VTARFLRE-----------MDNVASLPHSTKIVHEDKKTIADTDKHFKP 198
+ +P + L + M ++++L + + + T+ H P
Sbjct: 310 --CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE-----QVQDYVNKTNSHL-P 361
Query: 199 SDNDSSTGQVAPLWRYKTISNLSN--EKSV---PAEDLEQASRLL--VEALHIRDRYMDI 251
+ QV IS L N + V P + L + L +A D+
Sbjct: 362 AGK-----QVE-------IS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 252 SSQTFPQVTARFLREMDNVASLP-HS------TKIVHEDKKTIADTDKHFKPSD-----N 299
S+ + + RFL + P HS + ++++D + + F D
Sbjct: 409 FSERKLKFSNRFLP-----VASPFHSHLLVPASDLINKD---LVKNNVSFNAKDIQIPVY 460
Query: 300 DSSTGQ------------------VAPL-WRYKTISNLSNEKSDRNTF-HRFDKFNAKYN 339
D+ G P+ W E + + H D +
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKW----------ETTTQFKATHILD-----FG 505
Query: 340 PIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLSIYG 389
P G S L + T GT R+I VA L+ + + + YG
Sbjct: 506 PGGASGLGVL---THRNKDGTG-VRVI--VAGTLDINP--DDD-----YG 542
Score = 62.0 bits (150), Expect = 9e-10
Identities = 56/317 (17%), Positives = 100/317 (31%), Gaps = 92/317 (29%)
Query: 1 MCTHGIDKEDLIRSESPQFNGPKLAS---SYPG------------------SSGNL---L 36
+ T G++ + + + S + L S S P + G L L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 37 AGEELRIPELPN--EISAPYEVPQFPIEQIEKKLAI--------QQRMSQ--LLAKDLED 84
G L I+ F + K + + + L LED
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 85 RKSQYE--PS---LVPGVEDIETTAVIDEH-DFVPHFQRVAIS---GEDN---TGVPAED 132
E PS + + + +++ +P ++V IS G N +G P +
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PPQS 385
Query: 133 LEQASRLL--VEALHIRDRYMDISSQTFPQVTARFLREMDNVASLP-HS------TKIVH 183
L + L +A D+ S+ + + RFL + P HS + +++
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-----VASPFHSHLLVPASDLIN 440
Query: 184 EDKKTIADTDKHFKPSD-----NDSSTGQVAPLWRYKTISNLSNEKSVPAEDL-EQASRL 237
+D + + F D D+ G S+L +E + + RL
Sbjct: 441 KD---LVKNNVSFNAKDIQIPVYDTFDG-----------SDLRVLSGSISERIVDCIIRL 486
Query: 238 LV--------EALHIRD 246
V +A HI D
Sbjct: 487 PVKWETTTQFKATHILD 503
Score = 57.0 bits (137), Expect = 3e-08
Identities = 108/675 (16%), Positives = 188/675 (27%), Gaps = 242/675 (35%)
Query: 108 EHDF-VPH------------FQRVAISGEDNTGVPAEDLEQASR--LLVEAL-HIRDRYM 151
EH VP F + + T A D E + L+ + L ++
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNK---ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 152 DISSQTFPQV--------TARFLREMDNVASLPHSTKIVHEDKKTIADTDKHFKPSDNDS 203
F QV +L D +H +A +ND+
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGND-----------IH----ALAAK----LLQENDT 114
Query: 204 STGQVAPLWR-YKTISNLSNEKSVPAEDLEQASRLLVEA------LH------------- 243
+ + L + Y T ++ + S L L
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 244 --IRDRYMDISSQTFPQVTARFLREMDNV----ASLPHSTKIVHEDKKTIAD--TDKHFK 295
+RD Y QT+ + ++ + V I + +
Sbjct: 171 EELRDLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 296 PSDNDSSTGQVA-PLWRYKTISNLSNEKSDRNTFHRFDKFNAKYNPIGESRLREVFLKTD 354
P + + ++ PL + L++ + K + P GE LR
Sbjct: 226 PDKDYLLSIPISCPL---IGVIQLAH-------YVVTAK-LLGFTP-GE--LRSYLKGAT 271
Query: 355 NYLGGTYFARIIKEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRW 414
+ G A I A S + + AI
Sbjct: 272 GHSQGLVTAVAI---AE-----------------TDSWESFFVSVRKAIT---------V 302
Query: 415 LIQI-PRLYDIFKSNKLINNFQEILQNIFKPLFEVDTHIHAASCM------NQKHLLRFI 467
L I R Y+ + + L IL++ ++ + S M Q+ + ++
Sbjct: 303 LFFIGVRCYEAYPNTSLP---PSILED------SLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 468 KKT-------------LKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVDMLDVHAD 514
KT L N +V +G +L Y L + + A
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVV---SGPPQSL-----------YGLNLTLRKAKAP 399
Query: 515 ------RNTFH-RFDKFNAKYNPIGE---SRLREVFLKTDNYLGGTYFARIIKVDTHIHA 564
R F R KF+ ++ P+ S + L + +I D
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHS----------HLLVPA--SDLINKDL---- 443
Query: 565 ASCMNQKHLLRFIKKTLK---NHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVDML-- 619
K+ + F K ++ T G LR + S +++ + VD +
Sbjct: 444 -----VKNNVSFNAKDIQIPVYDT-------FDGS--DLRVL--SGSISE-RI-VDCIIR 485
Query: 620 -DVHADRNTF----HRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLE 674
V + T H D + P G S L + T GT R+I VA L+
Sbjct: 486 LPVKWETTTQFKATHILD-----FGPGGASGLGVL---THRNKDGTG-VRVI--VAGTLD 534
Query: 675 ESKYQNAELRLSIYG 689
+ + + YG
Sbjct: 535 INP--DDD-----YG 542
Score = 33.1 bits (75), Expect = 0.68
Identities = 35/211 (16%), Positives = 60/211 (28%), Gaps = 74/211 (35%)
Query: 70 IQQR-MSQLLAKDLEDRKSQYEPSLVPGVEDIETTAVIDEHDFVPHFQRVAISGEDNTGV 128
Q++ M DL Y+ S +D V + D HF+ D G
Sbjct: 1626 SQEQGM----GMDL------YKTS--KAAQD-----VWNRADN--HFK-------DTYGF 1659
Query: 129 PAEDL--EQASRLLV-----EALHIRDRYMDISSQTFPQVTARFLREMDNVASLPHSTKI 181
D+ L + + IR+ Y + +T + + + HST
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN--EHSTSY 1717
Query: 182 VHE-DKKTIADTDKHFKPSDNDSSTGQVA-PLWRYKTISNLSNEKSVPA----------E 229
+K ++ T T Q A L +L ++ +PA E
Sbjct: 1718 TFRSEKGLLSAT----------QFT-QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 230 -----------DLEQASRLLVEALHIRDRYM 249
+E + + R M
Sbjct: 1767 YAALASLADVMSIESLVEV----VFYRGMTM 1793
Score = 31.9 bits (72), Expect = 1.3
Identities = 54/262 (20%), Positives = 89/262 (33%), Gaps = 79/262 (30%)
Query: 537 REVFLKTDNYLGGTYFARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQ 596
++V+ + DN+ TY I+ + + N +L + G+
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVIN-------NPVNL-------------TIHFGGEKGK 1682
Query: 597 TMTLRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNY 656
+R+ + +M ++ VD K + I E F
Sbjct: 1683 --RIRENYSAM---IFETIVD------------GKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 657 LGGTYF---ARIIKEVAA--DLEESKYQNAELRL---SIYGKSEDEWDKLATWA----IE 704
L T F A + E AA DL+ A+ S+ G E+ LA+ A IE
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL-G----EYAALASLADVMSIE 1780
Query: 705 SNVYSNNIR-WLIQ--IPR------LYDIFKSN--KLINNF-QEILQNIFKP-------L 745
S V R +Q +PR Y + N ++ +F QE LQ + + L
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 746 FEVTNDSSSHPHLHKFLQYVIG 767
E+ N + + QYV
Sbjct: 1841 VEIVNYNVEN------QQYVAA 1856
Score = 30.8 bits (69), Expect = 3.3
Identities = 32/186 (17%), Positives = 48/186 (25%), Gaps = 73/186 (39%)
Query: 6 IDKEDLIRSESPQFNGPK-------------LASSYPGSSGNLLAGEELR----IPELPN 48
I KE S S F K A E+L+ IP
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-------AAFEDLKSKGLIPADAT 1758
Query: 49 -------EISA---PYEVPQFPIEQIEKKLAIQ---QR---MSQLLAKDLEDRKSQY--- 89
E +A +V IE ++ R M + +D E +S Y
Sbjct: 1759 FAGHSLGEYAALASLADV--MSIES-----LVEVVFYRGMTMQVAVPRD-ELGRSNYGMI 1810
Query: 90 --EPSLVPGVEDIETTAVIDEH------DFV-------PHFQRVAISGEDNTGVPAEDLE 134
P V E + E V + Q +G+ L+
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-YVAAGD------LRALD 1863
Query: 135 QASRLL 140
+ +L
Sbjct: 1864 TVTNVL 1869
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 58.4 bits (142), Expect = 4e-09
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 859 MSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKL 916
+ PLSN L +PLPE LA GL V +++DDP F + + + +V +
Sbjct: 246 VCPLSNVRLRAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGGY---VDDNFEQLVKVLEF 302
Query: 917 SSCDMCELARNSVLMS 932
S + LA NS+ S
Sbjct: 303 SVPEQATLAANSIRSS 318
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas
aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 58.3 bits (142), Expect = 4e-09
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 850 DHEITIRIAMSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEY 907
D +I + + PLSN L F + ++ + + L RG+ V++++DDP F + E +
Sbjct: 236 DEQIPL--TVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSDDPAYFGGY---VTENF 290
Query: 908 SIAAQVWKLSSCDMCELARNSVLMS 932
Q ++ LA+NS+
Sbjct: 291 HALQQSLGMTEEQARRLAQNSLDAR 315
>3iar_A Adenosine deaminase; purine metabolism structural genomics,
structural genomics consortium, SGC, D mutation,
hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A
{Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A*
1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A*
1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A*
3mvi_A 1a4l_A* ...
Length = 367
Score = 58.4 bits (142), Expect = 5e-09
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 859 MSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKL 916
+ P S+ + + + SL+TDDPL F T L +Y + +
Sbjct: 258 ICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKST---LDTDYQMTKRDMGF 314
Query: 917 SSCDMCELARNSVLMS 932
+ + L N+ S
Sbjct: 315 TEEEFKRLNINAAKSS 330
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor
binding domains, glyco hydrolase, growth factor,
secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Length = 508
Score = 57.3 bits (138), Expect = 2e-08
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 855 IRIAMSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQ 912
I I + P+SN L + +P+ +A G + +S+DDP F L ++
Sbjct: 377 IPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAK--GLSYDFYEVFM 434
Query: 913 VWKLSSCD---MCELARNSVLMSGFP 935
D + +LA NS+ S
Sbjct: 435 GIGGMKADLRTLKQLAMNSIKYSTLL 460
Score = 29.5 bits (66), Expect = 7.2
Identities = 34/257 (13%), Positives = 69/257 (26%), Gaps = 66/257 (25%)
Query: 561 HIHAASCMNQKHLLRFIKKT--------------LKNHTDEVVTKDRTGQTMTLRQVFQS 606
H+H + L+R + + ++ + + L +
Sbjct: 86 HLHDIGIVTMDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKR 145
Query: 607 M-NLTSYD------LTVDMLDVHADRNTFHR-FDKFNAKYNPIGESRLREVFLKTDNYLG 658
+ N+T +D T+ + + KF + + +
Sbjct: 146 VQNVTEFDDSLLRNFTLVTQHPEVIYTNQNVVWSKFETIF-----FTISGLIHYAPV--- 197
Query: 659 GTYFARIIKEVAADLEESKYQNAELRLSIY------GKSEDEWDKLATW------AIESN 706
F + + E E+R + G+ DE + T+ +E++
Sbjct: 198 ---FRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETH 254
Query: 707 VYSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVI 766
I+ + R D+ E ++ KF V
Sbjct: 255 PEFIGIKIIYSDHRSKDV-------AVIAESIRMAM-------------GLRIKFPTVVA 294
Query: 767 GFDSVDDESKPENPLFD 783
GFD V E + L D
Sbjct: 295 GFDLVGHEDTG-HSLHD 310
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical ST genomics of pathogenic protozoa
consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium
vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Length = 371
Score = 55.7 bits (135), Expect = 4e-08
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 859 MSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKL 916
+ P+SN L + +P+ + G+ VS+++DDP F + ++Y
Sbjct: 284 VCPISNVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDPGMFLTN---INDDYEELYTHLNF 340
Query: 917 SSCDMCELARNSVLMS 932
+ D ++ ++ S
Sbjct: 341 TLEDFMKMNEWALEKS 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.19
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 11/39 (28%)
Query: 65 EKKLAIQQRMSQLLAKDLEDRKSQYEPSLVPGVEDIETT 103
EK+ A+ K L+ Y P + I+ T
Sbjct: 18 EKQ-AL---------KKLQASLKLYADDSAPALA-IKAT 45
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 13/78 (16%)
Query: 333 KFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLSIYGKSE 392
FNA P R G ++ + + NA RLS YG
Sbjct: 269 AFNAGDAP---EAERRAA----AAFGTDTALEGLQRLRLSV------NAPKRLSDYGFEA 315
Query: 393 DEWDKLATWAIESNVYSN 410
+ +E +N
Sbjct: 316 SGIAEAVDVTLEKVPANN 333
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 13/78 (16%)
Query: 633 KFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKYQNAELRLSIYGKSE 692
FNA P R G ++ + + NA RLS YG
Sbjct: 269 AFNAGDAP---EAERRAA----AAFGTDTALEGLQRLRLSV------NAPKRLSDYGFEA 315
Query: 693 DEWDKLATWAIESNVYSN 710
+ +E +N
Sbjct: 316 SGIAEAVDVTLEKVPANN 333
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 29.8 bits (68), Expect = 4.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 924 LARNSVLMSGFPHGVAG 940
+AR +VL +G P G
Sbjct: 73 IARTAVLAAGLPETTGG 89
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural
genomics, NPPSFA, national Pro protein structural and
functional analyses; 1.90A {Pyrococcus horikoshii} SCOP:
c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Length = 430
Score = 29.7 bits (66), Expect = 5.1
Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 81 DLEDRKSQYEPSLVPGVEDIETTAVIDEHDFVPHFQRVAISGEDNTGVP-----AEDLEQ 135
+E + + PG +++ + + P I+ E + G ++ +
Sbjct: 7 KVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAK 66
Query: 136 ASRLLVEALHIRDR----YMDISSQTFPQ--VTARFLREMDNVASLPHSTKIVHED 185
S V L + F + + F NV + + D
Sbjct: 67 RSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLD 122
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 6.2
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 50 ISAPYEVPQFP--I--------EQIEKKLAIQQRMSQLL----AKDLEDRKSQYEPSL 93
I+ + Q P I +++++ A + M Q KDLE+ + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase;
1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A*
3ldr_A 3lih_A* 3lf7_A 3lfi_A*
Length = 634
Score = 29.4 bits (65), Expect = 7.9
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 947 PNAGHVFEFYNGVYHVY 963
P H + G++HV
Sbjct: 42 PC-AHYTDPSTGLFHVG 57
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 29.0 bits (66), Expect = 9.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 925 ARNSVLMSGFPHGVAGW 941
AR + LM+ PH A
Sbjct: 72 ARMASLMTQIPHTSAAQ 88
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 29.2 bits (66), Expect = 9.6
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 126 TGVPAEDLEQASRLLVEA 143
TG A ++ +A+ +
Sbjct: 266 TGCDAGEIRKAAVMFATE 283
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic,
complete proteome, direct protein sequencing, Fe4S4,
iron, iron sulfur cluster; HET: 2MD MGD; 2.27A
{Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A*
1fdo_A* 1aa6_A*
Length = 715
Score = 29.1 bits (66), Expect = 9.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 123 EDNTGVPAEDLEQASRLLVEA 143
ED TGV A ++ QA+R+ +A
Sbjct: 268 EDITGVSASEIRQAARMYAQA 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,392,825
Number of extensions: 944643
Number of successful extensions: 2153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 40
Length of query: 1001
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 898
Effective length of database: 3,825,930
Effective search space: 3435685140
Effective search space used: 3435685140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)