RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy47
(1001 letters)
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 499 bits (1286), Expect = e-166
Identities = 221/402 (54%), Positives = 276/402 (68%), Gaps = 19/402 (4%)
Query: 552 FARIIKVDTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTS 611
F + KVDTH+H ++CMNQKHLLRFIK L+ DEVV R G +TLR+VF+S++LT
Sbjct: 171 FYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIF-RDGTYLTLREVFESLDLTG 229
Query: 612 YDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + I K+V +
Sbjct: 230 YDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFS 289
Query: 672 DLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLI 731
DLE SKYQ AE R+SIYG+ EWD+LA+W + +++YS N+ WLIQ+PRLY+I+K ++
Sbjct: 290 DLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIV 349
Query: 732 NNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQ 791
+FQ IL NIF PLFE T D SHP LH FL+ V+GFD VDDESKPE + TP Q
Sbjct: 350 TSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERR-PTKHMPTPAQ 408
Query: 792 WNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKADA---------LTSKF 842
W NP ++YY YY YANL VLN+ + L+P + +A
Sbjct: 409 WTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLTCHSI 468
Query: 843 PNAQDIYDHEIT--------IRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPL 894
+ ++ + I +AMSPLSNNSLFL+YHRNP P + RGL VSLSTDDPL
Sbjct: 469 AHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPL 528
Query: 895 QFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPH 936
Q H TKEPL+EEYSIAA VWKLS+CD+CE+ARNSV SGF H
Sbjct: 529 QIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSH 570
Score = 218 bits (556), Expect = 3e-61
Identities = 113/373 (30%), Positives = 164/373 (43%), Gaps = 56/373 (15%)
Query: 114 HFQRVAISGEDNTGVPAEDLEQASRLLVEALHIRDRYMDISSQTFPQVTARFLREMDNVA 173
F R+ + E VP D +A + L E L +R RY+ F + A + +E+ +
Sbjct: 18 TFVRLNVPLE----VPTSDEVEAYKCLQECLELRKRYV------FQETVAPWEKEVISDP 67
Query: 174 SLPHSTKIVHEDKKTIADTDKHFKPSDNDSSTGQVAPLWRYKTISNLSNEKSVP-----A 228
S P +D F+ D V + + V
Sbjct: 68 STPKP-NTEPFAHYPQGKSDHCFEMQDGVV---HV-----FANKDAKEDLFPVADATAFF 118
Query: 229 EDLE-----QASRLLVEALHIRDRYMDISSQTFPQVTARFLREMDNVASLPH-----STK 278
DL A+ + H R ++ + +E S PH K
Sbjct: 119 TDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLH--LMLNADKEFLAQKSAPHRDFYNVRK 176
Query: 279 I---VH---------------EDKKTIADTDKHFKPSDN--DSSTGQVAPLWRYKTISNL 318
+ VH + D F+ + L Y +L
Sbjct: 177 VDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDL 236
Query: 319 SNEKSDRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAADLEESKY 378
+ +D++TFHRFDKFN KYNP G+SRLRE+FLK DN + G + I K+V +DLE SKY
Sbjct: 237 LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKY 296
Query: 379 QNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQEIL 438
Q AE R+SIYG+ EWD+LA+W + +++YS N+ WLIQ+PRLY+I+K ++ +FQ IL
Sbjct: 297 QMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQNIL 356
Query: 439 QNIFKPLFEVDTH 451
NIF PLFE
Sbjct: 357 DNIFIPLFEATVD 369
Score = 168 bits (426), Expect = 4e-44
Identities = 75/139 (53%), Positives = 97/139 (69%), Gaps = 7/139 (5%)
Query: 425 FKSNKLINNFQEILQN------IFKPLFEVDTHIHAASCMNQKHLLRFIKKTLKNHTDEV 478
F + ++N +E L F + +VDTH+H ++CMNQKHLLRFIK L+ DEV
Sbjct: 148 FNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEV 207
Query: 479 VTKDRTGQTMTLRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLRE 538
V R G +TLR+VF+S++LT YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRLRE
Sbjct: 208 VIF-RDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 266
Query: 539 VFLKTDNYLGGTYFARIIK 557
+FLK DN + G + I K
Sbjct: 267 IFLKQDNLIQGRFLGEITK 285
Score = 56.9 bits (137), Expect = 8e-09
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 941 WDLPDVPNAGHVFEFYNGVYHVYKNQEALAKGEAMNFPYPDLAEFVTNMHRLCAMIADGP 1000
+ + H FE +GV HV+ N++A FP D F T++H + +IA G
Sbjct: 77 FAHYPQGKSDHCFEMQDGVVHVFANKDAKED----LFPVADATAFFTDLHHVLKVIAAGN 132
Query: 1001 L 1001
+
Sbjct: 133 I 133
>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 349
Score = 80.3 bits (197), Expect = 1e-16
Identities = 43/340 (12%), Positives = 92/340 (27%), Gaps = 30/340 (8%)
Query: 599 TLRQVFQSMNLTSYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLG 658
T+ + + TV+ L + F AK+ V
Sbjct: 23 TILYFGKKRGIALPADTVEELRNIIGMDKPLSLPGFLAKF-----DYYMPVIAGCREA-- 75
Query: 659 GTYFARIIKEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQI 718
RI E + E+R S + + + D + E +V +++ L+
Sbjct: 76 ---IKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQ 132
Query: 719 PRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPE 778
+ + +++ EV + + G ++++ S
Sbjct: 133 GLQEGEQAFGIKVRSILCCMRHQPSWSLEVLELCKKYNQKTVVAMDLAGDETIEGSSLFP 192
Query: 779 NPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKADAL 838
+ + + + + +L E D
Sbjct: 193 GHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKT--------ERVGHGYHTIED-- 242
Query: 839 TSKFPNAQDIYDHEITIRIAMSPLSN--NSLFLNYHRNPLPEYLARGLVVSLSTDDPLQF 896
A + + + P S+ + + + + SL+TDDPL F
Sbjct: 243 -----EALYNRLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIF 297
Query: 897 HFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPH 936
T L +Y + + + + L N+ S P
Sbjct: 298 KST---LDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPE 334
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 74.1 bits (181), Expect = 2e-14
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 851 HEITIRIAMSPLSN--NSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYS 908
+ I + + P+SN + + +P+ + G+ VS+++DDP F + + Y
Sbjct: 262 KKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSN---INDNYE 318
Query: 909 IAAQVWKLSSCDMCELARNSVLMSGFPH 936
+ + + + S
Sbjct: 319 KLYIHLNFTLEEFMIMNNWAFEKSFVSD 346
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 30.7 bits (69), Expect = 1.1
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 12/123 (9%)
Query: 778 ENPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKADA 837
+P F L +N + T + +S ++ +
Sbjct: 98 SHPDFPEKGPEEINEELMKNVSHNPLLLLTPQKVKRYVESLWKKKSSGQPVTFTDIFGML 157
Query: 838 LTSKFPNAQDIYDHEITIRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQ-F 896
+ + + LS+ +N + PLP + + +S
Sbjct: 158 IGETLIHNRMNT-----------TLSSLKEKVNTAQCPLPLFTCLHVKPDVSELMFADWV 206
Query: 897 HFT 899
F+
Sbjct: 207 EFS 209
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 301
Score = 30.3 bits (66), Expect = 1.3
Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 1/147 (0%)
Query: 779 NPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLNQSTGRRSRRETNLQPGAYKADAL 838
L DA + L V + + L A
Sbjct: 140 EGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGAELAASYNALSAD 199
Query: 839 TSKFPNAQDIYDHEITIRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHF 898
++ + +A+ P+ G ++L+TD
Sbjct: 200 HLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSP 259
Query: 899 TKEPLMEEYSIAAQVWKLSSCDMCELA 925
L+ ++ A +++++ +
Sbjct: 260 LTS-LLLTMNMGATLFRMTVEECLTAT 285
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 418
Score = 28.1 bits (62), Expect = 6.1
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 21/146 (14%)
Query: 62 EQIEKK---LAIQQRMSQLLAKDLEDRKSQYEPSLVPGVEDIETTAVIDEHDFVPHFQRV 118
E + + + +++ A+ L ++ E G AV + +
Sbjct: 33 EDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALT-GNMAVQQVR---AGLKAI 88
Query: 119 AISGEDNTGVPAEDLEQASRLLVEALHIRDRYMDISSQTFPQVTAR---FLREMDNVASL 175
+SG + A + D+ + + + PQV R L+ D +A +
Sbjct: 89 YLSG----------WQVAGDANLSGHTYPDQSL-YPANSVPQVVRRINNALQRADQIAKI 137
Query: 176 PHSTKIVHEDKKTIADTDKHFKPSDN 201
T + + +AD + F + N
Sbjct: 138 EGDTSVENWLAPIVADGEAGFGGALN 163
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 27.5 bits (59), Expect = 7.6
Identities = 21/146 (14%), Positives = 41/146 (28%), Gaps = 1/146 (0%)
Query: 449 DTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQTMTLRQVFQSMNLTSYDLTVDM 508
D+ +H A +K L + + +K + ++ QT L + + +
Sbjct: 3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP-LHLAVITNQPEIAEALLGA 61
Query: 509 LDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKVDTHIHAASCM 568
R+ A S T +L A T +H AS
Sbjct: 62 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121
Query: 569 NQKHLLRFIKKTLKNHTDEVVTKDRT 594
++ + + + RT
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRT 147
Score = 27.5 bits (59), Expect = 7.9
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 559 DTHIHAASCMNQKHLLRFIKKTLKNHTDEVVTKDRTGQT 597
D+ +H A +K L + + +K + ++ QT
Sbjct: 3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQT 41
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 27.6 bits (61), Expect = 7.9
Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 18/125 (14%)
Query: 567 CMNQKHLLRFIKKTLKNHTDEVVTKDRTGQT-MTLRQVFQSMNLTSYD--LTVDMLDVHA 623
++ I + + + D + +T R+ ++ D L VD
Sbjct: 118 TTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQ 177
Query: 624 DRNTFH------------RFDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVAA 671
D + +F + + +L+ F + N I E++
Sbjct: 178 DAQILYKAGENRWGTDEDKFTEILCLRSF---PQLKLTFDEYRNISQKDIVDSIKGELSG 234
Query: 672 DLEES 676
E+
Sbjct: 235 HFEDL 239
>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId:
9606]}
Length = 319
Score = 27.3 bits (60), Expect = 8.8
Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 31/157 (19%)
Query: 567 CMNQKHLLRFIKKTLKNHTDEVVTKDRTGQT-MTLRQVFQSMNLTSYD---LTVDMLDVH 622
C L+ I + K + KD T R++ ++ +D +
Sbjct: 113 CSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELID 172
Query: 623 ADRNTFHR------------FDKFNAKYNPIGESRLREVFLKTDNYLGGTYFARIIKEVA 670
D + + + + L++VF + +Y I KEV
Sbjct: 173 QDARDLYDAGVKRKGTDVPKWISIMTERSV---PHLQKVFDRYKSYSPYDMLESIRKEVK 229
Query: 671 ADLEES------------KYQNAELRLSIYGKSEDEW 695
DLE + Y L S+ GK +
Sbjct: 230 GDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDK 266
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0343 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,746,402
Number of extensions: 180690
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 24
Length of query: 1001
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 907
Effective length of database: 1,116,976
Effective search space: 1013097232
Effective search space used: 1013097232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.2 bits)