BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4701
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 67/86 (77%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT KGKR A Q LAR+GIT+NPEV+F G+RSL+V+RPLL+LL + TALE FE LMAL N
Sbjct: 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIM 87
LA++ E RQRI+KE+G ++ +M
Sbjct: 608 LASMNESVRQRIIKEQGVSKIEYYLM 633
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 42/48 (87%)
Query: 77 KGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
GPL+VG+ ++A+EGIL+M+L MA T+D LQQ+VACEC+IA +SKKDK
Sbjct: 276 NGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 67 EKQRQRILKEKGPLEVG 83
E+Q +R+LKEKGP VG
Sbjct: 101 ERQFKRVLKEKGPTAVG 117
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 67 EKQRQRILKEKGPLEVG 83
E+Q +R+LKEKGP VG
Sbjct: 101 ERQFKRVLKEKGPTAVG 117
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 30 ERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKE 76
+ L VV+PL +H E + F L C + A Q ++ E
Sbjct: 96 QEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 142
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 30 ERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKE 76
+ L VV+PL +H E + F L C + A Q ++ E
Sbjct: 98 QEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 144
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 54 EGLMALCNLAAIGEKQRQRILKEKGPLE 81
E L AL N+A+ G +Q+Q + KE G LE
Sbjct: 199 EALWALSNIASGGNEQKQAV-KEAGALE 225
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 54 EGLMALCNLAAIGEKQRQRILKEKGPLE 81
E L AL N+A+ G +Q+Q + KE G LE
Sbjct: 157 EALWALSNIASGGNEQKQAV-KEAGALE 183
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 54 EGLMALCNLAAIGEKQRQRILKEKGPLE 81
E L AL N+A+ G +Q+Q + KE G LE
Sbjct: 157 EALWALSNIASGGNEQKQAV-KEAGALE 183
>pdb|1L6W|A Chain A, Fructose-6-Phosphate Aldolase
pdb|1L6W|B Chain B, Fructose-6-Phosphate Aldolase
pdb|1L6W|C Chain C, Fructose-6-Phosphate Aldolase
pdb|1L6W|D Chain D, Fructose-6-Phosphate Aldolase
pdb|1L6W|E Chain E, Fructose-6-Phosphate Aldolase
pdb|1L6W|F Chain F, Fructose-6-Phosphate Aldolase
pdb|1L6W|G Chain G, Fructose-6-Phosphate Aldolase
pdb|1L6W|H Chain H, Fructose-6-Phosphate Aldolase
pdb|1L6W|I Chain I, Fructose-6-Phosphate Aldolase
pdb|1L6W|J Chain J, Fructose-6-Phosphate Aldolase
Length = 220
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 10 AAQGLARL----GITLNPEVAFPGERSLEVVRPLL 40
A + L+R+ G+T NP + G++ L+VV P L
Sbjct: 12 AVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLPQL 46
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 7 KRQAAQGLARLGITLN---PEVAFP----------GERSLEVVRPLLSLLHPEATALETF 53
+ +AA+ R G TLN E+ P GER L P+L+ L P+ A++T
Sbjct: 156 EERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTG 215
Query: 54 EGLMA 58
L++
Sbjct: 216 AWLLS 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,975,987
Number of Sequences: 62578
Number of extensions: 93798
Number of successful extensions: 217
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 15
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)