BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4701
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1
Length = 929
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT G+ +AAQ LA+L IT NPE+ FPGER EVVRPL+SLLH + L+ FE LMAL N
Sbjct: 685 GTDVGQTKAAQALAKLTITSNPEMTFPGERIYEVVRPLVSLLHLNCSGLQNFEALMALTN 744
Query: 62 LAAIGEKQRQRILKEK 77
LA I E+ RQ+ILKEK
Sbjct: 745 LAGISERLRQKILKEK 760
>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1
Length = 944
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT G+ +AAQ LA+L IT NPE+ FPGER EVVRPL+SLLH + L+ FE LMAL N
Sbjct: 700 GTDVGQTKAAQALAKLTITSNPEMTFPGERIYEVVRPLVSLLHLNCSGLQNFEALMALTN 759
Query: 62 LAAIGEKQRQRILKEK 77
LA I E+ RQ+ILKEK
Sbjct: 760 LAGISERLRQKILKEK 775
>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2
Length = 944
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT G+ +AAQ LA+L IT NPE+ FPGER EVVRPL+SLLH + L+ FE LMAL N
Sbjct: 700 GTDVGQTKAAQALAKLTITSNPEMTFPGERIYEVVRPLVSLLHLSCSGLQNFEALMALTN 759
Query: 62 LAAIGEKQRQRILKEK 77
LA I E+ RQ+ILKEK
Sbjct: 760 LAGISERLRQKILKEK 775
>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1
Length = 944
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT G+ +AAQ LA+L IT NPE+ FPGER EVVRPL+SLLH + L+ FE LMAL N
Sbjct: 700 GTDVGQTKAAQALAKLTITSNPEMTFPGERIYEVVRPLVSLLHLSCSGLQNFEALMALTN 759
Query: 62 LAAIGEKQRQRILKEK 77
LA I E+ RQ+ILKEK
Sbjct: 760 LAGISERLRQKILKEK 775
>sp|Q68F64|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1
Length = 927
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 12/117 (10%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT GK +A+ GLA++ NP++AFPGER EVVRPL+SLL+ E ++ FE L+AL N
Sbjct: 681 GTDVGKTKASHGLAKIAAVSNPDIAFPGERVYEVVRPLVSLLNTERDGVQNFEALLALTN 740
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAV 118
L+ +K RQ+I+KEK E+ + + N E I Q C C +AV
Sbjct: 741 LSGKSDKLRQKIVKEKALPEIEN------------YMFENHEQIRQAATECMCNLAV 785
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 77 KGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASK 121
+GP ++G+ ++ +G++EM++ + +E + Q VA E +I ++K
Sbjct: 404 QGPFDLGNILLGMQGVMEMMVALTGSEKEVDQLVAVEALIHASTK 448
>sp|D7REX8|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1
Length = 927
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 12/117 (10%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT GK +A+ GLA++ NP++AFPGER EVVRPL+SLL+ E ++ FE L+AL N
Sbjct: 681 GTDVGKIKASHGLAKIAAVSNPDIAFPGERVYEVVRPLVSLLNTERDGIQNFEALLALTN 740
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAV 118
L+ +K RQ+I+KEK E+ + + N E I Q C C +A+
Sbjct: 741 LSGKNDKLRQKIIKEKALPEIEN------------YMFENHEQIRQAATECMCNLAL 785
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 32/45 (71%)
Query: 77 KGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASK 121
+GP ++G+ +++ +G++EM++ + +E+ + Q VA E +I ++K
Sbjct: 404 QGPFDLGNKLLSLQGVMEMMVALTGSENEVDQLVAVEALIHASTK 448
>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2
Length = 934
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT KGK +A+ LA++ NPE+AFPGER EVVRPL+SLL + +E FE L L N
Sbjct: 688 GTDKGKIKASHALAKIAAVSNPEIAFPGERIYEVVRPLVSLLGTDRDGMENFEALRGLTN 747
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIM 87
LA + +K R +ILKEK E+ + +
Sbjct: 748 LAGLNDKLRVKILKEKALPEIENYMF 773
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 77 KGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
+GP ++G+ + ++G++EM++ + +E + Q VA E +I ++K K
Sbjct: 411 QGPFDLGNVLAGRQGVMEMMVALCGSEREVDQLVAVEALIHASTKTSK 458
>sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1
Length = 931
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT GK +AA GLA++ NP++AFPGER EVVRPL+SLL + L+ +E L+ L N
Sbjct: 686 GTDVGKVKAAHGLAKIAAVSNPDIAFPGERVYEVVRPLVSLLDTQRDGLQNYEALLGLTN 745
Query: 62 LAAIGEKQRQRILKEKG 78
L+ +K RQ+I KEK
Sbjct: 746 LSGRSDKLRQKIFKEKA 762
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 77 KGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASK 121
+GP ++G+ ++ +G++EM++ + +E Q VA E +I ++K
Sbjct: 407 QGPFDLGNQLLGMKGVMEMMVALCGSEREADQLVAVEALIHASTK 451
>sp|Q8IWX7|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens GN=UNC45B PE=2 SV=1
Length = 931
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT GK +AA LA++ NP++AFPGER EVVRPL+ LL + L+ +E L+ L N
Sbjct: 686 GTDVGKVKAAHALAKIAAVSNPDIAFPGERVYEVVRPLVRLLDTQRDGLQNYEALLGLTN 745
Query: 62 LAAIGEKQRQRILKEKG 78
L+ +K RQ+I KE+
Sbjct: 746 LSGRSDKLRQKIFKERA 762
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 77 KGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASK 121
+GP ++G+ ++ +G++EM++ + +E Q VA E +I ++K
Sbjct: 407 QGPFDLGNQLLGLKGVMEMMVALCGSERETDQLVAVEALIHASTK 451
>sp|A8L3W3|ATPA_FRASN ATP synthase subunit alpha OS=Frankia sp. (strain EAN1pec) GN=atpA
PE=3 SV=1
Length = 553
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 24 EVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83
++A G R+LE+ P + P L+T G+ A+ + AIG QRQ I+ ++ + G
Sbjct: 124 DIAAAGTRALELQAPSVVQRQPVKEPLQT--GIKAIDAMTAIGRGQRQLIIGDR---QTG 178
Query: 84 SSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKK 122
+ +A + I+ A+ + +++V C +A+ KK
Sbjct: 179 KTTVAIDAIINQRDNWASGDP--KKQVKC-VYVAIGQKK 214
>sp|Q0RDB2|ATPA_FRAAA ATP synthase subunit alpha OS=Frankia alni (strain ACN14a) GN=atpA
PE=3 SV=1
Length = 552
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 24 EVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83
E+ G R+LE+ P + P L+T G+ A+ + AIG QRQ I+ ++ + G
Sbjct: 124 EIQAEGTRALELQAPTVVQRQPVKEPLQT--GIKAIDAMTAIGRGQRQLIIGDR---QTG 178
Query: 84 SSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKK 122
+ +A + I+ A+ + ++V C +A+ KK
Sbjct: 179 KTTVAIDTIINQRDNWASGDP--SKQVKC-VYVAIGQKK 214
>sp|Q6ME60|RL2_PARUW 50S ribosomal protein L2 OS=Protochlamydia amoebophila (strain
UWE25) GN=rplB PE=3 SV=1
Length = 281
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 63
K R G +L + N ++ P E S V+P SLL P+ C
Sbjct: 2 FKKYRPVTPGTRQLALPTNEQLTRPCENSRATVKPTKSLLLPKRRTNGRNNNGHITCRHK 61
Query: 64 AIGEKQRQRIL-----KEKGPLEVGS 84
G KQ RI+ KE P +V S
Sbjct: 62 GGGHKQHYRIVDFKRDKENIPAKVAS 87
>sp|Q2J6N1|ATPA_FRASC ATP synthase subunit alpha OS=Frankia sp. (strain CcI3) GN=atpA
PE=3 SV=1
Length = 552
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 24 EVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83
E+ G R LE+ P + P L+T G+ A+ + AIG QRQ I+ ++ + G
Sbjct: 124 EIVAEGSRELELQAPTVVQRQPVKEPLQT--GIKAIDAMTAIGRGQRQLIIGDR---QTG 178
Query: 84 SSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKK 122
+ +A + I+ + + ++V C +A+ KK
Sbjct: 179 KTTVAIDAIINQRDNWTSGDP--SKQVKC-VYVAIGQKK 214
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36
PE=1 SV=3
Length = 1121
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 16 RLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALE--TFEGLMALCNLAAIGEKQRQR 72
R+G++ P V++ GER +VV+ LL +A + T++G M+ + AI + ++ R
Sbjct: 1004 RMGLSQAPPVSWNGERESDVVQELLKYSSDKAYGRKVLTWDGKMSAVSQDAIEDSRQAR 1062
>sp|Q2SHX7|SDHD_HAHCH Probable D-serine dehydratase OS=Hahella chejuensis (strain KCTC
2396) GN=dsdA PE=3 SV=1
Length = 437
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 12 QGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQ 71
Q A T N + + E L+ PLL L PE LE GL+ + A ++
Sbjct: 28 QNPASAPATPNVDALYAAEARLKRFAPLLQRLFPE---LEPSHGLIESSLIQA--DRLNN 82
Query: 72 RI--------LKEKGPLEVGSSIMAKEGILEMVLV---MANTEDILQQKVACECIIAVAS 120
RI LK L V S+ A+ GI E++ +A T +L+ + C +A S
Sbjct: 83 RINPVGGLLFLKADHDLPVAGSVKARGGIHEVLCFAESLALTHGVLKDVDSDYCTLASQS 142
Query: 121 KKD 123
+D
Sbjct: 143 ARD 145
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 35 VVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGIL 93
VV PLLSL+ + + L + L A C + + +KQR+ +LK+ +V I++ E ++
Sbjct: 546 VVSPLLSLMDDQVSDLPSC--LKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALV 602
>sp|Q5RE88|WDR66_PONAB WD repeat-containing protein 66 OS=Pongo abelii GN=WDR66 PE=2 SV=1
Length = 1155
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 75 KEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQK 109
+E+G S I +K GI LV + TEDIL QK
Sbjct: 212 REEGQERTVSDIQSKAGISRESLVSSTTEDILFQK 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,227,556
Number of Sequences: 539616
Number of extensions: 1343686
Number of successful extensions: 3733
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3712
Number of HSP's gapped (non-prelim): 33
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)