Query psy4701
Match_columns 124
No_of_seqs 120 out of 196
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:40:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3opb_A SWI5-dependent HO expre 99.9 1.1E-23 3.9E-28 188.6 10.9 115 6-120 517-683 (778)
2 3now_A UNC-45 protein, SD10334 99.7 4.8E-17 1.7E-21 146.2 9.3 119 2-120 548-694 (810)
3 4db6_A Armadillo repeat protei 98.3 2.9E-06 9.8E-11 61.0 8.8 96 23-119 1-124 (210)
4 3ul1_B Importin subunit alpha- 98.3 4E-06 1.4E-10 69.7 10.4 87 4-95 71-161 (510)
5 3tpo_A Importin subunit alpha- 97.9 9E-05 3.1E-09 61.6 10.1 87 5-93 91-178 (529)
6 4db6_A Armadillo repeat protei 97.8 0.00016 5.6E-09 51.7 8.8 112 4-120 26-167 (210)
7 4db8_A Armadillo-repeat protei 97.7 0.00027 9.4E-09 51.7 9.3 114 3-120 25-167 (252)
8 1xm9_A Plakophilin 1; armadill 97.7 0.00028 9.6E-09 58.0 10.2 85 2-91 14-101 (457)
9 4hxt_A De novo protein OR329; 97.5 0.00083 2.8E-08 48.5 9.4 112 4-120 58-199 (252)
10 4db8_A Armadillo-repeat protei 97.3 0.00042 1.4E-08 50.7 6.2 86 4-93 110-196 (252)
11 4b8j_A Importin subunit alpha- 97.3 0.0016 5.4E-08 53.2 9.7 88 4-94 88-177 (528)
12 1xqr_A HSPBP1 protein; armadil 97.3 0.00092 3.1E-08 53.0 8.0 114 3-120 95-238 (296)
13 4hxt_A De novo protein OR329; 97.2 0.0025 8.7E-08 45.9 9.5 85 34-119 2-114 (252)
14 3tpo_A Importin subunit alpha- 97.2 0.0012 4.1E-08 54.8 8.5 113 4-121 265-407 (529)
15 3tt9_A Plakophilin-2; cell adh 97.2 0.0018 6.1E-08 50.2 8.8 97 6-107 26-130 (233)
16 1xqr_A HSPBP1 protein; armadil 97.2 0.00092 3.2E-08 53.0 7.0 113 3-119 53-195 (296)
17 1wa5_B Importin alpha subunit; 97.1 0.0026 8.7E-08 52.2 9.6 114 4-120 101-244 (530)
18 3ul1_B Importin subunit alpha- 97.1 0.0017 5.8E-08 53.8 8.5 114 4-121 246-388 (510)
19 3l6x_A Catenin delta-1; cateni 97.0 0.002 6.8E-08 56.1 8.0 81 3-88 61-144 (584)
20 2jdq_A Importin alpha-1 subuni 96.9 0.021 7E-07 44.7 12.5 113 4-119 164-304 (450)
21 2jdq_A Importin alpha-1 subuni 96.9 0.007 2.4E-07 47.4 9.5 90 4-94 34-124 (450)
22 1wa5_B Importin alpha subunit; 96.7 0.016 5.6E-07 47.4 11.0 113 4-119 229-369 (530)
23 1jdh_A Beta-catenin; beta-cate 96.7 0.0027 9.1E-08 51.0 5.7 89 4-96 74-162 (529)
24 3nmw_A APC variant protein; AR 96.6 0.0084 2.9E-07 48.5 8.6 113 4-120 185-334 (354)
25 3nmz_A APC variant protein; pr 96.6 0.004 1.4E-07 52.4 6.3 82 8-94 166-260 (458)
26 1jdh_A Beta-catenin; beta-cate 96.6 0.013 4.5E-07 46.9 9.1 111 4-119 324-488 (529)
27 3l6x_A Catenin delta-1; cateni 96.5 0.01 3.5E-07 51.6 8.8 61 34-95 48-108 (584)
28 3nmz_A APC variant protein; pr 96.5 0.011 3.8E-07 49.7 8.5 114 3-120 300-450 (458)
29 4b8j_A Importin subunit alpha- 96.4 0.028 9.4E-07 45.8 10.5 112 4-119 217-357 (528)
30 2z6h_A Catenin beta-1, beta-ca 96.4 0.0044 1.5E-07 52.4 5.9 89 4-96 71-159 (644)
31 3tt9_A Plakophilin-2; cell adh 96.4 0.011 3.9E-07 45.6 7.4 61 35-95 9-70 (233)
32 2z6h_A Catenin beta-1, beta-ca 96.3 0.022 7.7E-07 48.0 9.7 79 4-86 112-191 (644)
33 1xm9_A Plakophilin 1; armadill 96.3 0.01 3.5E-07 48.6 7.4 55 35-90 3-57 (457)
34 3nmw_A APC variant protein; AR 96.2 0.012 4.1E-07 47.6 7.0 103 6-110 234-343 (354)
35 3now_A UNC-45 protein, SD10334 96.1 0.011 3.8E-07 53.3 7.2 99 4-119 637-736 (810)
36 2z6g_A B-catenin; FULL-length, 95.6 0.011 3.9E-07 51.8 4.8 88 3-94 206-293 (780)
37 2z6g_A B-catenin; FULL-length, 95.6 0.064 2.2E-06 47.0 9.6 78 5-88 375-452 (780)
38 4gmo_A Putative uncharacterize 94.6 0.075 2.6E-06 46.0 7.0 60 35-96 35-95 (684)
39 3ltm_A Alpha-REP4; protein eng 92.2 1.1 3.9E-05 31.5 8.8 29 90-118 173-201 (211)
40 3ltj_A Alpharep-4; protein eng 92.1 1.7 5.8E-05 30.4 9.6 45 5-63 60-104 (201)
41 3ltj_A Alpharep-4; protein eng 90.9 2.9 9.9E-05 29.1 9.9 47 4-64 28-74 (201)
42 3ltm_A Alpha-REP4; protein eng 89.3 4.2 0.00014 28.5 9.9 26 92-117 144-169 (211)
43 3opb_A SWI5-dependent HO expre 88.3 0.68 2.3E-05 41.8 5.6 90 4-96 620-719 (778)
44 1te4_A Conserved protein MTH18 88.1 4.2 0.00014 26.9 8.5 98 10-115 13-128 (131)
45 1oyz_A Hypothetical protein YI 87.8 4.5 0.00015 29.7 9.1 47 4-64 37-83 (280)
46 3grl_A General vesicular trans 86.8 1.5 5.1E-05 38.9 6.8 80 33-113 121-207 (651)
47 1oyz_A Hypothetical protein YI 84.9 7.6 0.00026 28.4 9.1 100 6-118 107-219 (280)
48 2vgl_B AP-2 complex subunit be 83.9 1.4 4.9E-05 36.9 5.1 66 36-119 123-188 (591)
49 4fdd_A Transportin-1; heat rep 82.4 6 0.00021 34.0 8.6 107 6-119 337-470 (852)
50 3grl_A General vesicular trans 76.6 13 0.00043 33.1 8.8 81 6-88 138-219 (651)
51 1b3u_A Protein (protein phosph 74.7 16 0.00056 28.9 8.4 106 5-117 456-584 (588)
52 4gmo_A Putative uncharacterize 73.2 2.1 7.3E-05 36.9 3.0 77 4-86 48-128 (684)
53 1ibr_B P95, importin beta-1 su 72.9 20 0.0007 27.3 8.4 95 5-120 343-437 (462)
54 3oc3_A Helicase MOT1, MOT1; re 71.5 13 0.00043 33.6 7.5 86 4-119 242-327 (800)
55 4fdd_A Transportin-1; heat rep 64.0 38 0.0013 29.0 9.0 98 5-120 143-244 (852)
56 2bpt_A Importin beta-1 subunit 62.4 68 0.0023 26.8 10.7 112 4-120 109-253 (861)
57 1te4_A Conserved protein MTH18 61.3 9.7 0.00033 25.0 3.8 46 4-63 56-101 (131)
58 1ibr_B P95, importin beta-1 su 53.5 71 0.0024 24.2 8.8 103 4-121 144-247 (462)
59 2qk2_A LP04448P; mini spindles 53.1 41 0.0014 24.1 6.4 55 6-64 73-127 (242)
60 2db0_A 253AA long hypothetical 51.0 21 0.00071 28.0 4.6 36 39-75 186-221 (253)
61 2vgl_B AP-2 complex subunit be 50.8 22 0.00075 29.6 5.1 110 4-119 135-267 (591)
62 2db0_A 253AA long hypothetical 49.8 40 0.0014 26.3 6.0 92 2-120 119-210 (253)
63 2qk2_A LP04448P; mini spindles 46.1 78 0.0027 22.5 7.9 116 3-121 28-163 (242)
64 2qk1_A Protein STU2; STU2P, XM 44.3 94 0.0032 23.0 9.3 116 4-120 30-175 (249)
65 1qgr_A Protein (importin beta 42.2 60 0.002 27.2 6.5 101 4-120 144-246 (876)
66 1w63_A Adapter-related protein 40.8 1.3E+02 0.0043 25.2 8.3 56 5-68 157-212 (618)
67 1w63_A Adapter-related protein 40.2 15 0.00051 31.0 2.5 71 5-90 122-192 (618)
68 1u6g_C TIP120 protein, CAND1; 39.1 36 0.0012 30.5 4.9 59 5-63 101-162 (1230)
69 1b3u_A Protein (protein phosph 38.0 1.1E+02 0.0036 24.1 7.0 29 91-119 126-154 (588)
70 1qgr_A Protein (importin beta 37.4 1.8E+02 0.0061 24.2 9.3 55 5-66 343-397 (876)
71 2vgl_A Adaptor protein complex 31.1 71 0.0024 27.0 5.3 76 6-94 127-204 (621)
72 2ihm_A POL MU, DNA polymerase 29.3 45 0.0016 26.9 3.6 35 51-86 96-130 (360)
73 3h0g_D DNA-directed RNA polyme 24.0 56 0.0019 23.0 2.9 44 27-74 65-108 (135)
74 2bpt_A Importin beta-1 subunit 22.8 3.3E+02 0.011 22.6 8.0 54 6-66 347-400 (861)
75 1u6g_C TIP120 protein, CAND1; 21.6 4.3E+02 0.015 23.5 9.3 67 5-74 21-88 (1230)
76 2fmp_A DNA polymerase beta; nu 21.3 62 0.0021 25.7 2.9 35 53-88 94-128 (335)
No 1
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-23 Score=188.64 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCC--C-----------CchhhhhHHHHHHHhhcCCC----hH
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHP--E-----------ATALETFEGLMALCNLAAIG----EK 68 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~--~-----------~~~l~~fEaLlALTNLAs~~----~~ 68 (124)
+|..|+||||||+|++||.++|++|+++++||||+.||++ + .+.+|+|||||||||||+.+ |+
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 8999999999999999999999999889999999999983 3 34589999999999999998 57
Q ss_pred HHHHHHHc-cchhhhhhhhhccchHHHH----------------------------------HHHHhCCcchHHHHHHHH
Q psy4701 69 QRQRILKE-KGPLEVGSSIMAKEGILEM----------------------------------VLVMANTEDILQQKVACE 113 (124)
Q Consensus 69 ~r~~Iv~~-~G~s~IEnlLls~n~~Lqr----------------------------------al~M~~S~d~~~Q~~a~e 113 (124)
+|++|+++ ++|+.++++|+++|..+|+ .++|+.++|+..|.+|++
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 89999996 8999999999997666555 346778888889999999
Q ss_pred HHHHHhh
Q psy4701 114 CIIAVAS 120 (124)
Q Consensus 114 ~ii~a~s 120 (124)
+|.+.++
T Consensus 677 ALAnLts 683 (778)
T 3opb_A 677 IFANIAT 683 (778)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998764
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.69 E-value=4.8e-17 Score=146.18 Aligned_cols=119 Identities=46% Similarity=0.723 Sum_probs=106.1
Q ss_pred CchhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 2 ~~~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
|++.+|..|++||+++++++||..+|++++..++||||+.||+++.+.+++|||++||+|||+.+|+.+++|+.++||+.
T Consensus 548 ~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 67889999999999999999999999987777899999999997888999999999999999999999999999999999
Q ss_pred hhhhhhccch----------------------------HHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMAKEG----------------------------ILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls~n~----------------------------~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+++++.+.+. .++..+.|+.++|...|..|+.+|-+.++
T Consensus 628 Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 628 IEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 9999988554 44444677788888888889988888775
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.33 E-value=2.9e-06 Score=61.02 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=62.9
Q ss_pred CCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhccch-----------
Q psy4701 23 PEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEG----------- 91 (124)
Q Consensus 23 P~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls~n~----------- 91 (124)
|...|++++.....++|..||. +.+.--+.+|+.+|.||+..+++.++.++..++++.+-+++-+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (210)
T 4db6_A 1 MRGSHHHHHHGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79 (210)
T ss_dssp ------------CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCccccccccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6778999999999999999997 4455666899999999999999999998887777777666655332
Q ss_pred -----------------HHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 92 -----------------ILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 92 -----------------~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
.++..+.+..++|...|..|+.+|-+.+
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124 (210)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3444566666667777777777776655
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.31 E-value=4e-06 Score=69.71 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHhHh-hCCC---cccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccch
Q psy4701 4 VKGKRQAAQGLARLGIT-LNPE---VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGP 79 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs-~nP~---l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~ 79 (124)
..-++.|.+++-|++-. -||- ++= ..+||+|+.+|..+.+.--+|||.-|||||||.+++.++.|+..+++
T Consensus 71 ~~~q~~a~~~~rklls~e~~ppi~~ii~-----~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI 145 (510)
T 3ul1_B 71 LESQLQATQAARKLLSREKQPPIDNIIR-----AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145 (510)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHH-----TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHH-----CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence 34578899999998743 4563 221 23899999999756666668999999999999999999999987777
Q ss_pred hhhhhhhhccchHHHH
Q psy4701 80 LEVGSSIMAKEGILEM 95 (124)
Q Consensus 80 s~IEnlLls~n~~Lqr 95 (124)
+.+-.++-+.+.-++.
T Consensus 146 p~Lv~lL~s~~~~v~e 161 (510)
T 3ul1_B 146 PAFISLLASPHAHISE 161 (510)
T ss_dssp HHHHHHTTCSCHHHHH
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7776666655554443
No 5
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.86 E-value=9e-05 Score=61.58 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHhH-hhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 5 KGKRQAAQGLARLGI-TLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 5 ~~~~~A~qaLAkilI-s~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
..+..|.+++-|++- ..||.+-.- --..+||+|+.+|..+.+.--+|||+-||||||+.+++.++.|+..++++.+-
T Consensus 91 ~~q~~a~~~~rklLs~~~~~~i~~i--i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv 168 (529)
T 3tpo_A 91 ESQLQATQAARKLLSREKQPPIDNI--IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI 168 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCHHHH--HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHH--HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 456788899988863 345532000 01348999999997677778899999999999999999999998866666665
Q ss_pred hhhhccchHH
Q psy4701 84 SSIMAKEGIL 93 (124)
Q Consensus 84 nlLls~n~~L 93 (124)
.++-+.+..+
T Consensus 169 ~LL~s~~~~v 178 (529)
T 3tpo_A 169 SLLASPHAHI 178 (529)
T ss_dssp HHTTCSCHHH
T ss_pred HHHcCCCHHH
Confidence 5555544433
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.76 E-value=0.00016 Score=51.67 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHhHhhCCCc--ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEV--AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l--~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
+.-+..|+.+|..+... +|.. .|- ...+|++|+.+|..+ +.--+.+|+.+|.||+.-+++.++.++..++++.
T Consensus 26 ~~v~~~a~~~L~~l~~~-~~~~~~~i~---~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 100 (210)
T 4db6_A 26 QQELQSALRKLSQIASG-GNEQIQAVI---DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100 (210)
T ss_dssp HHHHHHHHHHHHHHHTS-CHHHHHHHH---HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHH---HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHH
Confidence 35577889999988632 2221 121 135899999999744 4555678999999999988999988887777755
Q ss_pred hhhhhhc----------------------------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMA----------------------------KEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls----------------------------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+-.++-+ +.+.++..+.+..+++...|..|+.+|.+.+.
T Consensus 101 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 5554433 23456666778888888888888888887764
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.69 E-value=0.00027 Score=51.72 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=80.8
Q ss_pred chhhHHHHHHHHHHHhHhhCCCc-ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 3 TVKGKRQAAQGLARLGITLNPEV-AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilIs~nP~l-~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
.+..+..|+++|.+++...++.. .|- ...+|++|+.+|..+ +.--+.+|+.+|.||+.-+++.+..++..++++.
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~---~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 100 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVI---DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHH---HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHH---HcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 34568899999999887644431 122 135899999999733 4666889999999999988999999888777766
Q ss_pred hhhhhhccc----------------------------hHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMAKE----------------------------GILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls~n----------------------------~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+-.++-+++ +.++..+.+..+++...|..|+.+|-+-+.
T Consensus 101 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 666555433 244455666667777777777777766553
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.68 E-value=0.00028 Score=57.97 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=64.9
Q ss_pred CchhhHHHHHHHHHHHhHhhCCC-c-ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccch
Q psy4701 2 GTVKGKRQAAQGLARLGITLNPE-V-AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGP 79 (124)
Q Consensus 2 ~~~~~~~~A~qaLAkilIs~nP~-l-~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~ 79 (124)
+.+..+..|+.+|.++.. .||. - .+- ...+|++|+.+|.. .+.--+++|.-||+||++.+++.|..|+..+|+
T Consensus 14 ~~~~~q~~A~~~L~~l~~-~~~~~~~~i~---~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCF-QDESAKQQVY---QLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGI 88 (457)
T ss_dssp SCTHHHHHHHHHHHHHTS-SCSSHHHHHH---HTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHc-CChHHHHHHH---HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 345678899999999874 3332 1 222 24589999999974 444457999999999999889999999998999
Q ss_pred hhhhhhhh-ccch
Q psy4701 80 LEVGSSIM-AKEG 91 (124)
Q Consensus 80 s~IEnlLl-s~n~ 91 (124)
+.+-.++- +.+.
T Consensus 89 ~~Lv~lL~~~~~~ 101 (457)
T 1xm9_A 89 REAVSLLRRTGNA 101 (457)
T ss_dssp HHHHHHHTTCCCH
T ss_pred HHHHHHHhhCCCH
Confidence 88888886 4333
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.49 E-value=0.00083 Score=48.46 Aligned_cols=112 Identities=22% Similarity=0.219 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHhHhhCCC--cccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPE--VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~--l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
+..+..|+.+|..+... +|. -.+- ....|++|+.+|. +.+.--+..|+.+|.||+..+++.+..++..++++.
T Consensus 58 ~~v~~~a~~~L~~l~~~-~~~~~~~~~---~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 132 (252)
T 4hxt_A 58 SEVQKEAARALANIASG-PDEAIKAIV---DAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 132 (252)
T ss_dssp HHHHHHHHHHHHHHTTS-CHHHHHHHH---HTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHcC-ChHHHHHHH---HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 45577888888887643 121 1111 1358999999997 445555678999999999988888888887666665
Q ss_pred hhhhhhcc----------------------------chHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMAK----------------------------EGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls~----------------------------n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+-.++-+. .+.++..+.+..+++...|..|+.+|-+.+.
T Consensus 133 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 55544432 2355666777777777778888877777654
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.33 E-value=0.00042 Score=50.70 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHhHhhCCC-cccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPE-VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEV 82 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~-l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~I 82 (124)
+..+..|+.+|..+.-..... -.+- ...+|++|+.+|. +.+.--+.+|+.+|.||+..+++.++.++..++++.+
T Consensus 110 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 185 (252)
T 4db8_A 110 EQILQEALWALSNIASGGNEQIQAVI---DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhcCCchHHHHHH---HCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence 456778888888884322211 1111 1358999999997 3455567899999999999988888888877777777
Q ss_pred hhhhhccchHH
Q psy4701 83 GSSIMAKEGIL 93 (124)
Q Consensus 83 EnlLls~n~~L 93 (124)
-+++-+.+..+
T Consensus 186 ~~ll~~~~~~v 196 (252)
T 4db8_A 186 VQLLSSPNEQI 196 (252)
T ss_dssp HHGGGCSSHHH
T ss_pred HHHHCCCCHHH
Confidence 76666544433
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.28 E-value=0.0016 Score=53.17 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHhHhhC-CCc-ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 4 VKGKRQAAQGLARLGITLN-PEV-AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~n-P~l-~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
+.-+..|+++|.+++-... |.. .+- ...+|++|+.+|..+.+.--+++|+-+|+||++.+++.+..++..++.+.
T Consensus 88 ~~~~~~A~~~L~~l~s~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~ 164 (528)
T 4b8j_A 88 NNLQLEATTQFRKLLSIERSPPIEEVI---QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHH---HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHH---HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHH
Confidence 4567889999999876543 331 111 13589999999975544677899999999999998899998888666666
Q ss_pred hhhhhhccchHHH
Q psy4701 82 VGSSIMAKEGILE 94 (124)
Q Consensus 82 IEnlLls~n~~Lq 94 (124)
+-.++-+.+..++
T Consensus 165 L~~lL~~~~~~v~ 177 (528)
T 4b8j_A 165 FVKLLGSSSDDVR 177 (528)
T ss_dssp HHHHTTCSCHHHH
T ss_pred HHHHhcCCCHHHH
Confidence 6666655544443
No 12
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.27 E-value=0.00092 Score=53.03 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=79.3
Q ss_pred chhhHHHHHHHHHHHhHhhCCCc--ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchh
Q psy4701 3 TVKGKRQAAQGLARLGITLNPEV--AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPL 80 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilIs~nP~l--~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s 80 (124)
.+.-|..|+.+|+.|. +-||.. .+- ...+++||+.||..+.+.--+=+|+-||.||+.-.+...+.++..+|++
T Consensus 95 ~~~vr~~Aa~~Lg~ia-~~n~~~~~~vv---~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCS-QNVAAIQEQVL---GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170 (296)
T ss_dssp SHHHHHHHHHHHHHHH-TTCHHHHHHHH---HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHH-hCCHHHHHHHH---HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 3456788999999865 456642 111 1358999999996443444456899999999987777666666656665
Q ss_pred hhhhhhhc----------------------------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 81 EVGSSIMA----------------------------KEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 81 ~IEnlLls----------------------------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
.+-.++-+ +.+.++..+.|..++|...|..|+.+|-+.++
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 55444433 44566777888888888888888888876654
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.25 E-value=0.0025 Score=45.86 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=64.0
Q ss_pred cchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhccc-----------------------
Q psy4701 34 EVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKE----------------------- 90 (124)
Q Consensus 34 ~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls~n----------------------- 90 (124)
+.|++|+.+|..+ +.--+++|+.+|.|+++-+++.++.+++.++++.+-+++-+.+
T Consensus 2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999733 4666889999999999999888888887667666555554422
Q ss_pred -----hHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 91 -----GILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 91 -----~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
+.++..+.+..+++...|..|+.+|-+-+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 114 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45566677777777778888887777766
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.22 E-value=0.0012 Score=54.75 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHHhHhhCCC--cccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPE--VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~--l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
+..+..|+.+|+.+.-..+.. .+. ...++++|+.+|. +.+.--+..++.+|.||++.+++.+..++..++++.
T Consensus 265 ~~v~~~a~~aL~~l~~~~~~~~~~v~----~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 265 PEVLADSCWAISYLTDGPNERIEMVV----KKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 339 (529)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHH----TTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHH----hccchHHHHHHhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHH
Confidence 445667777777765422211 111 1347999999997 344455678999999999999999888887666655
Q ss_pred hhhhhhc----------------------------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhhh
Q psy4701 82 VGSSIMA----------------------------KEGILEMVLVMANTEDILQQKVACECIIAVASK 121 (124)
Q Consensus 82 IEnlLls----------------------------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~sk 121 (124)
+-.++-+ +.+.+...+.+..+++...|..|+.+|.+.++.
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 5444433 345666678888888888999999999887753
No 15
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.21 E-value=0.0018 Score=50.19 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHhHhhCCC--cccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 6 GKRQAAQGLARLGITLNPE--VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~--l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
-+..|+.+|..+....+|. .++. ...||||+.+|.. .+.--+++|.-||+||++-+++-|..|+..+|++.+=
T Consensus 26 ~q~~Aa~~l~~L~~~~~~~r~~I~~----~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv 100 (233)
T 3tt9_A 26 RISAAATFIQHECFQKSEARKRVNQ----LRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLL 100 (233)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHH----TTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHH----cCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHH
Confidence 3566777776655543332 2332 3489999999973 4566789999999999998899999999989998888
Q ss_pred hhhhc-cc-hHHHHH----HHHhCCcchHH
Q psy4701 84 SSIMA-KE-GILEMV----LVMANTEDILQ 107 (124)
Q Consensus 84 nlLls-~n-~~Lqra----l~M~~S~d~~~ 107 (124)
.++-+ .+ ++.+.+ .+|+..++...
T Consensus 101 ~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~ 130 (233)
T 3tt9_A 101 QVLKQTRDLETKKQITGLLWNLSSNDKLKN 130 (233)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcChhhHH
Confidence 88863 33 333333 45655555443
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.18 E-value=0.00092 Score=53.01 Aligned_cols=113 Identities=9% Similarity=0.002 Sum_probs=77.4
Q ss_pred chhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHh-hcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 3 TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLS-LLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~-LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
+...|..|...|+.++=..+-...|.. ...++||+. +|.. .+.--+-.|+-+|.|++.-+++.|+.+++.+|.+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~---~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~ 128 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQ---LSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHH---TTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHH---cCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 345778888888887765544444542 458999999 9973 34444558999999999999999999998777766
Q ss_pred hhhhhhcc-----------------------------chHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 82 VGSSIMAK-----------------------------EGILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 82 IEnlLls~-----------------------------n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
+=.++-++ .+.+...+.+..++|...|.-|+-+|-+.+
T Consensus 129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 65555431 223333455556666777777776666654
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.14 E-value=0.0026 Score=52.16 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHhHhh-CCCc-ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 4 VKGKRQAAQGLARLGITL-NPEV-AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~-nP~l-~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
+.-+..|+++|.+++-.- +|.. .+- ...+|++|+.+|..+.+.--+++|+-+|+|+++.+++.++.++..++++.
T Consensus 101 ~~~~~~A~~~L~~ll~~~~~~~~~~~~---~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~ 177 (530)
T 1wa5_B 101 MQEQLSATVKFRQILSREHRPPIDVVI---QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177 (530)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCSHHHHH---HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHH---HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence 456788999999997643 4432 111 13589999999975446667899999999999998888888877666666
Q ss_pred hhhhhhccc----------------------------hHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMAKE----------------------------GILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls~n----------------------------~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+-.++-+.+ +.+...+.+..+++...+..|+.+|.+-+.
T Consensus 178 Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 655554432 334445566666666777777777776653
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.14 E-value=0.0017 Score=53.83 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHHhHhhCCCc-ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEV-AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEV 82 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l-~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~I 82 (124)
+..+..|+.+|+.+.-..+-.. .+- ....+++|+.+|. +.+.--+..++.+|.||++.+++.+..++..++++.+
T Consensus 246 ~~v~~~A~~aL~~L~~~~~~~~~~i~---~~g~i~~Lv~lL~-~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L 321 (510)
T 3ul1_B 246 PEVLADSCWAISYLTDGPNERIEMVV---KKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 321 (510)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHH---TTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGC
T ss_pred HHHHHHHHHHHHHHhhchhhhHHHHH---hcccchhhhhhhc-CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHH
Confidence 4456677888887753221110 010 1347899999997 3445556789999999999999999888876666544
Q ss_pred hhhhhc----------------------------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhhh
Q psy4701 83 GSSIMA----------------------------KEGILEMVLVMANTEDILQQKVACECIIAVASK 121 (124)
Q Consensus 83 EnlLls----------------------------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~sk 121 (124)
-.++-+ +.+.+...+.+..+++...|..|+.+|.+.++.
T Consensus 322 ~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp C-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 443332 345667778888899999999999999887764
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.00 E-value=0.002 Score=56.08 Aligned_cols=81 Identities=17% Similarity=0.039 Sum_probs=62.9
Q ss_pred chhhHHHHHHHHHHHhHhhCCC--cccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCC-ChHHHHHHHHccch
Q psy4701 3 TVKGKRQAAQGLARLGITLNPE--VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAI-GEKQRQRILKEKGP 79 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilIs~nP~--l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~-~~~~r~~Iv~~~G~ 79 (124)
.+..+..|+.+|.++....++. .+. ...+|+||+.||. ..+.--+++|.-||.|||+. +++.|..|+..+|+
T Consensus 61 ~~~~q~~Aa~~L~~La~~~~~~k~~V~----~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaI 135 (584)
T 3l6x_A 61 LDAVKSNAAAYLQHLCYRNDKVKTDVR----KLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGV 135 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHH----HTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHH----HcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCH
Confidence 4566788999988887533332 122 1358999999997 45677789999999999996 68999999998999
Q ss_pred hhhhhhhhc
Q psy4701 80 LEVGSSIMA 88 (124)
Q Consensus 80 s~IEnlLls 88 (124)
+.+=.++-+
T Consensus 136 p~LV~LL~s 144 (584)
T 3l6x_A 136 PALVRLLRK 144 (584)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888888775
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.92 E-value=0.021 Score=44.67 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
+..+..|..+|..+....+|...+.- ...++++|..+|.. .+.--..+++.+|.||+..+++.++.++..++++.+-
T Consensus 164 ~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 240 (450)
T 2jdq_A 164 LTMTRNAVWALSNLCRGKSPPPEFAK--VSPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCGGG--TGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHH--HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHH
Confidence 45688899999999876656643332 35689999999973 3444567899999999988777666666655555554
Q ss_pred hhhhcc----------------------------chHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 84 SSIMAK----------------------------EGILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 84 nlLls~----------------------------n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
.++-+. .+.++..+.+..+++...+..|+.+|-+.+
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 444332 245556667777777777777777776655
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.88 E-value=0.007 Score=47.37 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHHhH-hhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhh
Q psy4701 4 VKGKRQAAQGLARLGI-TLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEV 82 (124)
Q Consensus 4 ~~~~~~A~qaLAkilI-s~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~I 82 (124)
+..|..|+++|.+++- ..||..--. -+....+++|+.+|..+.+.--+++|+-+|+|+++.+++.++.++..++++.+
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~-~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 112 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEV-ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF 112 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHH-HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHH-HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHH
Confidence 4568889999999875 346543110 01125799999999755466678999999999999888777777765555555
Q ss_pred hhhhhccchHHH
Q psy4701 83 GSSIMAKEGILE 94 (124)
Q Consensus 83 EnlLls~n~~Lq 94 (124)
-.++-+.+..++
T Consensus 113 ~~lL~~~~~~vr 124 (450)
T 2jdq_A 113 IELLSSEFEDVQ 124 (450)
T ss_dssp HHHTTCSCHHHH
T ss_pred HHHHcCCCHHHH
Confidence 555554444333
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.73 E-value=0.016 Score=47.35 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
...+..|..+|..+....+|..-+. ....++++|+.+|.. .+.--...++.+|.||+..+++.++.++..++++.+-
T Consensus 229 ~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 229 PSLIRTATWTLSNLCRGKKPQPDWS--VVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCHH--HHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcHH--HHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 3457788999999887765654333 134689999999973 3455567899999999998887777777656665555
Q ss_pred hhhhccc----------------------------hHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 84 SSIMAKE----------------------------GILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 84 nlLls~n----------------------------~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
.++-+.+ +.+...+.+..+++...+..|+.+|-+.+
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5544322 34455566666667777777777776654
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.66 E-value=0.0027 Score=50.98 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
+..+..|+++|.++.-..++...+.. ...|++|+.+|.. .+.--+++|+-+|.||++.+++.++.++..++++.+-
T Consensus 74 ~~~~~~a~~~L~~ls~~~~~~~~i~~---~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 149 (529)
T 1jdh_A 74 VETARCTAGTLHNLSHHREGLLAIFK---SGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHH---TTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHH---cCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence 45678888999986554333332332 3689999999973 3455678999999999999888888888878888888
Q ss_pred hhhhccchHHHHH
Q psy4701 84 SSIMAKEGILEMV 96 (124)
Q Consensus 84 nlLls~n~~Lqra 96 (124)
.++-+.+..++..
T Consensus 150 ~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 150 ALLNKTNVKFLAI 162 (529)
T ss_dssp HGGGCCCHHHHHH
T ss_pred HHHhcCCHHHHHH
Confidence 8887766555543
No 24
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.65 E-value=0.0084 Score=48.50 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHhH-h-hC-CCcccCCCCCCcchHhhHhhcCCCCch--h-hhhHHHHHHHhhcC---CChHHHHHHH
Q psy4701 4 VKGKRQAAQGLARLGI-T-LN-PEVAFPGERSLEVVRPLLSLLHPEATA--L-ETFEGLMALCNLAA---IGEKQRQRIL 74 (124)
Q Consensus 4 ~~~~~~A~qaLAkilI-s-~n-P~l~F~~~~~~~~v~pL~~LL~~~~~~--l-~~fEaLlALTNLAs---~~~~~r~~Iv 74 (124)
+..+..|+.+|..+.. . -| +.++ ....+|++|+.+|..+.+. + -.-+|.-+|-||++ .+++.|+.|+
T Consensus 185 ~~~~~~A~~aL~nLs~~~~~nk~~i~----~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 260 (354)
T 3nmw_A 185 ESTLKSVLSALWNLSAHCTENKADIC----AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH----HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChhhhHHHH----HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 4455666677766644 1 11 1111 0245899999999643321 2 24568899999998 5788888888
Q ss_pred Hccchhhhhhhhhc----------------------------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 75 KEKGPLEVGSSIMA----------------------------KEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 75 ~~~G~s~IEnlLls----------------------------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
..++++.+-.++-+ +.+.+...+.|..|++...|..|+.+|-+-++
T Consensus 261 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 76676665555544 22334444556666666666666666665553
No 25
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.56 E-value=0.004 Score=52.41 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhHhhCCCc--ccCCCCCCcchHhhHhhcCC----------CCchhhhhHHHHHHHhhcCCChHHHHHHHH
Q psy4701 8 RQAAQGLARLGITLNPEV--AFPGERSLEVVRPLLSLLHP----------EATALETFEGLMALCNLAAIGEKQRQRILK 75 (124)
Q Consensus 8 ~~A~qaLAkilIs~nP~l--~F~~~~~~~~v~pL~~LL~~----------~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~ 75 (124)
..|..+|.+| +.+|.. .+- ...+++||+.||.. ..+.--+++|..+|+||+.-+++.+..|..
T Consensus 166 ~qAv~aL~nl--s~~~e~R~~i~---~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~ 240 (458)
T 3nmz_A 166 CPAVCVLMKL--SFDEEHRHAMN---ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 240 (458)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHH---HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCHHHHHHHH---HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 3788889998 556652 121 24599999999941 112345899999999999888777777766
Q ss_pred ccc-hhhhhhhhhccchHHH
Q psy4701 76 EKG-PLEVGSSIMAKEGILE 94 (124)
Q Consensus 76 ~~G-~s~IEnlLls~n~~Lq 94 (124)
..| ++.+=.++-+.+.-++
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHH
T ss_pred cCCcHHHHHHHHhCCCHHHH
Confidence 566 7777777766554333
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.55 E-value=0.013 Score=46.90 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHHHhHhhCCCc-----ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccc
Q psy4701 4 VKGKRQAAQGLARLGITLNPEV-----AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l-----~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G 78 (124)
+..+..|..+|+.+. ..+|.- .+- ....+++|..+|..+.+.--+.+++.+|.|++.-++ .+..++..++
T Consensus 324 ~~v~~~a~~~L~nl~-~~~~~~~~~~~~i~---~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~ 398 (529)
T 1jdh_A 324 EDITEPAICALRHLT-SRHQEAEMAQNAVR---LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGA 398 (529)
T ss_dssp HHHHHHHHHHHHHHT-SSSTTHHHHHHHHH---HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH-cCCchHHHHHHHHH---HcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCC
Confidence 356678899999883 334431 111 234799999999855555677899999999998544 3456655444
Q ss_pred hhhhhhhhhc-------------------------------------------------cchHHHHHHHHhCCcchHHHH
Q psy4701 79 PLEVGSSIMA-------------------------------------------------KEGILEMVLVMANTEDILQQK 109 (124)
Q Consensus 79 ~s~IEnlLls-------------------------------------------------~n~~Lqral~M~~S~d~~~Q~ 109 (124)
++.+-+++-+ +.+.++..+.++.++++..|.
T Consensus 399 i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~ 478 (529)
T 1jdh_A 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 478 (529)
T ss_dssp HHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHH
Confidence 4444333322 233456678888888888898
Q ss_pred HHHHHHHHHh
Q psy4701 110 VACECIIAVA 119 (124)
Q Consensus 110 ~a~e~ii~a~ 119 (124)
.++.++-+-+
T Consensus 479 ~a~~~l~~l~ 488 (529)
T 1jdh_A 479 VAAGVLCELA 488 (529)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 27
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.51 E-value=0.01 Score=51.63 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=48.2
Q ss_pred cchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhccchHHHH
Q psy4701 34 EVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEM 95 (124)
Q Consensus 34 ~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls~n~~Lqr 95 (124)
..|++|+.+|. ..+.-.+++|..+|+||++-+++.|..|+..+|++.+=.++-+.+.-+|.
T Consensus 48 ~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~ 108 (584)
T 3l6x_A 48 PELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108 (584)
T ss_dssp CCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred ccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHH
Confidence 37999999997 44566789999999999999999999999877776666666555554443
No 28
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.47 E-value=0.011 Score=49.66 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=72.0
Q ss_pred chhhHHHHHHHHHHHhH-h-hC-CCcccCCCCCCcchHhhHhhcCCCCch--h-hhhHHHHHHHhhcC---CChHHHHHH
Q psy4701 3 TVKGKRQAAQGLARLGI-T-LN-PEVAFPGERSLEVVRPLLSLLHPEATA--L-ETFEGLMALCNLAA---IGEKQRQRI 73 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilI-s-~n-P~l~F~~~~~~~~v~pL~~LL~~~~~~--l-~~fEaLlALTNLAs---~~~~~r~~I 73 (124)
.+..+..|+.+|..+.. . -| +.++ ....+|++|+.+|....+. + -.-+|.-+|.||++ .+++.|+.|
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~nk~~I~----~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i 375 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTENKADIC----AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 375 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHH----HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHH----HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 34566777778877765 1 11 2221 0245899999999643322 2 35678999999998 578888888
Q ss_pred HHccchhhhhhhhhc----------------------------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 74 LKEKGPLEVGSSIMA----------------------------KEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 74 v~~~G~s~IEnlLls----------------------------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+..++++.+-.++-+ +.+.+...+.|..+++...|..|+.+|-+-++
T Consensus 376 ~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 376 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 876666655555443 22334444666666666667777777666553
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.45 E-value=0.028 Score=45.76 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
+..+..|+.+|..+.-.. |...+. ....++++|+.+|+. .+.--...++.||.||+..+++..+.++..++++.+-
T Consensus 217 ~~v~~~a~~~L~~L~~~~-~~~~~~--~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv 292 (528)
T 4b8j_A 217 LSMLRNATWTLSNFCRGK-PQPSFE--QTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (528)
T ss_dssp HHHHHHHHHHHHHHHCSS-SCCCHH--HHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCcHH--HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHH
Confidence 455678888888887653 332222 135689999999973 4445567899999999988887777777666666655
Q ss_pred hhhhccc----------------------------hHHHHHHHHhCCc-chHHHHHHHHHHHHHh
Q psy4701 84 SSIMAKE----------------------------GILEMVLVMANTE-DILQQKVACECIIAVA 119 (124)
Q Consensus 84 nlLls~n----------------------------~~Lqral~M~~S~-d~~~Q~~a~e~ii~a~ 119 (124)
.++-+.+ +.+...+.+..++ +...|..|+.+|-+.+
T Consensus 293 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5554432 3344445555555 6666666666666554
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.44 E-value=0.0044 Score=52.39 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
...+..|+.+|..+....++...+.. ..+|++|+.+|. +.+.--+++|+-+|.||++.+++.++.++..++++.+-
T Consensus 71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv 146 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHHREGLLAIFK---SGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 146 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHT---TTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHH---cCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHH
Confidence 45677888888876554443333332 368999999997 34566789999999999999888888888878888888
Q ss_pred hhhhccchHHHHH
Q psy4701 84 SSIMAKEGILEMV 96 (124)
Q Consensus 84 nlLls~n~~Lqra 96 (124)
.++-+.+..++.+
T Consensus 147 ~lL~~~~~~~~~~ 159 (644)
T 2z6h_A 147 ALLNKTNVKFLAI 159 (644)
T ss_dssp HGGGCCCHHHHHH
T ss_pred HHHCcCCHHHHHH
Confidence 8877766655553
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.35 E-value=0.011 Score=45.59 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=46.0
Q ss_pred chHhhHhhcCCCCc-hhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhccchHHHH
Q psy4701 35 VVRPLLSLLHPEAT-ALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEM 95 (124)
Q Consensus 35 ~v~pL~~LL~~~~~-~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls~n~~Lqr 95 (124)
.+++|+.+|..+.. .--+++|.-+|+||+.-+++.|+.|+..+|++.+=.++-+.+..+|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~ 70 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQR 70 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence 69999999964433 24467899999999999999999999877776666666555544443
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.35 E-value=0.022 Score=48.04 Aligned_cols=79 Identities=16% Similarity=0.018 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHhHhhCCCc-ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEV-AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEV 82 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l-~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~I 82 (124)
+..+..|+.+|.++....++.. .+. ...+|++|+.+|..+ +.--+--++-+|+||++-+++.|..|+..+|+..+
T Consensus 112 ~~v~~~A~~aL~nL~~~~~~~~~~v~---~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~L 187 (644)
T 2z6h_A 112 DSVLFYAITTLHNLLLHQEGAKMAVR---LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187 (644)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHH---HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhHHHHH---HCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHH
Confidence 4568889999999988754432 111 135899999999643 32222333558999998778888888776666544
Q ss_pred hhhh
Q psy4701 83 GSSI 86 (124)
Q Consensus 83 EnlL 86 (124)
-.++
T Consensus 188 v~lL 191 (644)
T 2z6h_A 188 VNIM 191 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 33
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.32 E-value=0.01 Score=48.58 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=43.4
Q ss_pred chHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhccc
Q psy4701 35 VVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKE 90 (124)
Q Consensus 35 ~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls~n 90 (124)
.|++|+.+|..+ +.--+++|+.+|.||+.-+++.|..|++.+|++.+-.++-+++
T Consensus 3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~ 57 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN 57 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC
Confidence 589999999633 4456899999999999888888989988777777766665543
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.21 E-value=0.012 Score=47.61 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhH--hhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 6 GKRQAAQGLARLGI--TLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 6 ~~~~A~qaLAkilI--s~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
.+..|..+|..+.. +.+|...-- =....+|+||+.+|. +.+.--+-+|.-||.||+.-+++.++.|+..++++.+-
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~-i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv 311 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQI-LRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH-HHTTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHH-HHHcCCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 35556666666543 234431100 012458999999997 34445678999999999988899999999989999999
Q ss_pred hhhhccchHHHHH-----HHHhCCcchHHHHH
Q psy4701 84 SSIMAKEGILEMV-----LVMANTEDILQQKV 110 (124)
Q Consensus 84 nlLls~n~~Lqra-----l~M~~S~d~~~Q~~ 110 (124)
+++-+.+..++.. .+++......+|..
T Consensus 312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~~ 343 (354)
T 3nmw_A 312 NLIHSKHKMIAMGSAAALRNLMANRPAKYKDA 343 (354)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCCGGGC--
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHHHHhhh
Confidence 9988877776653 56676666665543
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.14 E-value=0.011 Score=53.28 Aligned_cols=99 Identities=17% Similarity=0.071 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHH-ccchhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILK-EKGPLEV 82 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~-~~G~s~I 82 (124)
+.-+..|+.+|+.|....+-.--|- ...+.+++|+.||.. .+.--+=+|..||.||++.+++.++.|+. ++|++
T Consensus 637 ~~Vq~~A~~~L~NLa~~~~~~~~~v--~~~g~l~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~-- 711 (810)
T 3now_A 637 LYLTRAAAQCLCNLVMSEDVIKMFE--GNNDRVKFLALLCED-EDEETATACAGALAIITSVSVKCCEKILAIASWLD-- 711 (810)
T ss_dssp TTHHHHHHHHHHHHTTSHHHHHHHH--SSSSHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH--
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHH--hccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH--
Confidence 3457788888888765322111222 124689999999974 34556678999999999988888888887 34433
Q ss_pred hhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 83 GSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 83 EnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
..+.|+.++|...|..|+.++.+.+
T Consensus 712 ------------~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 712 ------------ILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp ------------HHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5556666666666666666665554
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.61 E-value=0.011 Score=51.76 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=64.2
Q ss_pred chhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhh
Q psy4701 3 TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEV 82 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~I 82 (124)
....|+.|+++|.++....++...+.. ..+|++|+.+|.. .+.--+++|+-+|+||++.+++.++.++..++++.+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~---~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L 281 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFK---SGGIPALVNMLGS-PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHH---TTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHH---cCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence 356788999999995544333222221 3689999999973 355668999999999999988888888877777777
Q ss_pred hhhhhccchHHH
Q psy4701 83 GSSIMAKEGILE 94 (124)
Q Consensus 83 EnlLls~n~~Lq 94 (124)
=.++-+.+..++
T Consensus 282 v~lL~~~~~~v~ 293 (780)
T 2z6g_A 282 VALLNKTNVKFL 293 (780)
T ss_dssp HHGGGCCCHHHH
T ss_pred HHHHhcCCHHHH
Confidence 777766554443
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.61 E-value=0.064 Score=46.99 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhh
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGS 84 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEn 84 (124)
..+..|+.+|..+.-...+.. ...++|++|+.+|+.+. .--+..|+.+|.||+..+++.++.+++.+|+..+-.
T Consensus 375 ~~~~~a~~~L~~L~~~~~~~~-----~~~~~i~~Lv~lL~~~d-~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 448 (780)
T 2z6g_A 375 RLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448 (780)
T ss_dssp HHHHHHHHHHHHHHTTCTTCS-----CCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhh-----hhhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 456778888888775443321 12458999999997443 334578999999999998888888888777776666
Q ss_pred hhhc
Q psy4701 85 SIMA 88 (124)
Q Consensus 85 lLls 88 (124)
++.+
T Consensus 449 lL~~ 452 (780)
T 2z6g_A 449 TVLR 452 (780)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 38
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.64 E-value=0.075 Score=46.01 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=49.3
Q ss_pred chHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh-hhhhhhccchHHHHH
Q psy4701 35 VVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE-VGSSIMAKEGILEMV 96 (124)
Q Consensus 35 ~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~-IEnlLls~n~~Lqra 96 (124)
.|.|++..|. +.+.-.+..|+.||+||++ +++.|+.+.+++++.. ++.++.+.+.-++..
T Consensus 35 ~i~Pll~~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~ 95 (684)
T 4gmo_A 35 KILPVLKDLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAA 95 (684)
T ss_dssp TTHHHHHHHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHH
T ss_pred hHHHHHHHcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHH
Confidence 6789999996 5667789999999999997 7899999999888765 688888766655555
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.24 E-value=1.1 Score=31.53 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=15.6
Q ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHH
Q psy4701 90 EGILEMVLVMANTEDILQQKVACECIIAV 118 (124)
Q Consensus 90 n~~Lqral~M~~S~d~~~Q~~a~e~ii~a 118 (124)
...+.....+.++++...+..|.++|-..
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 34444455555556666666666665443
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.11 E-value=1.7 Score=30.36 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhc
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 63 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLA 63 (124)
..|..|+.+|+++. + .+++++|..+|. +.+.--+..|+-+|.++.
T Consensus 60 ~vr~~a~~~L~~~~---~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 60 WVRRAAADALGQIG---D----------ERAVEPLIKALK-DEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp HHHHHHHHHHHHHC---C----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC---C----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 34566677776653 1 135666666665 334444455555555543
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.94 E-value=2.9 Score=29.10 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcC
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 64 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs 64 (124)
+..|..|+++|+++.- .+++++|..+|. +.+.--+.+|+.+|.++..
T Consensus 28 ~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGD-------------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHHHCC-------------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCC-------------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC
Confidence 4567888999987641 257899999996 5566667777777777653
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.27 E-value=4.2 Score=28.46 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHH
Q psy4701 92 ILEMVLVMANTEDILQQKVACECIIA 117 (124)
Q Consensus 92 ~Lqral~M~~S~d~~~Q~~a~e~ii~ 117 (124)
.+...+.+.+++|...+..|+++|-.
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 43
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.28 E-value=0.68 Score=41.81 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHhHhhCCCc----ccCCCCC--CcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHc-
Q psy4701 4 VKGKRQAAQGLARLGITLNPEV----AFPGERS--LEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKE- 76 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l----~F~~~~~--~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~- 76 (124)
+.-|+.|...++.+.- +|.. .|..... ..-++||+.|++ ..+.--+-.|.-||.|+++.++.+++.|+..
T Consensus 620 ~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~-s~D~~~r~AAagALAnLts~~~~ia~~ll~~~ 696 (778)
T 3opb_A 620 VPLQRSTLELISNMMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQ-LSDVESQRAVAAIFANIATTIPLIAKELLTKK 696 (778)
T ss_dssp HHHHHHHHHHHHHHHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhC--CcHHHHHHHHhhcCchhhccHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence 3467888999998874 7763 3443211 113889999997 4566667788899999999889999999986
Q ss_pred cchhhhhhhhhc---cchHHHHH
Q psy4701 77 KGPLEVGSSIMA---KEGILEMV 96 (124)
Q Consensus 77 ~G~s~IEnlLls---~n~~Lqra 96 (124)
+|+..+-+.+-+ +.++.+|+
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ccHHHHHHHHhccCCCHHHHHHH
Confidence 455444443333 55566666
No 44
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.09 E-value=4.2 Score=26.90 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=54.4
Q ss_pred HHHHHHHHhHhhCCCcccCCCC-----CCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCC-------------ChHHHH
Q psy4701 10 AAQGLARLGITLNPEVAFPGER-----SLEVVRPLLSLLHPEATALETFEGLMALCNLAAI-------------GEKQRQ 71 (124)
Q Consensus 10 A~qaLAkilIs~nP~l~F~~~~-----~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~-------------~~~~r~ 71 (124)
....|.+.+=+.||.+-...-. ..+.+++|..+|. |.+.--+..|+.||.++..- +..+|.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~ 91 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLS-NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRS 91 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTTHHHHHHGGG-CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHH
Confidence 3445555555556654322211 1225788999997 56666778888888887631 123343
Q ss_pred HHHHccchhhhhhhhhccchHHHHHHHHhCCcchHHHHHHHHHH
Q psy4701 72 RILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECI 115 (124)
Q Consensus 72 ~Iv~~~G~s~IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~i 115 (124)
..+.. +++ +.+...+...+.+..++|...+..|+++|
T Consensus 92 ~A~~a-----L~~--~~~~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 92 GAARS-----LEQ--IGGERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHH-----HHH--HCSHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHH-----HHH--hCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33321 221 23455677778888888888888887765
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.80 E-value=4.5 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcC
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 64 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs 64 (124)
+..|..|+.+|.++. + -+++++|..+|. +.+.--+..|..+|.++..
T Consensus 37 ~~vr~~A~~~L~~~~---~----------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 37 SLKRISSARVLQLRG---G----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp HHHHHHHHHHHHHHC---C----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHccC---C----------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc
Confidence 345677888888775 1 247888888886 4445556667777766653
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=86.77 E-value=1.5 Score=38.90 Aligned_cols=80 Identities=24% Similarity=0.200 Sum_probs=67.8
Q ss_pred CcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChH-HHHHHHHc-cchhhhhhhhhccchHHHHH-----HHHhCCcch
Q psy4701 33 LEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEK-QRQRILKE-KGPLEVGSSIMAKEGILEMV-----LVMANTEDI 105 (124)
Q Consensus 33 ~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~-~r~~Iv~~-~G~s~IEnlLls~n~~Lqra-----l~M~~S~d~ 105 (124)
.+.|+.|+.+|. ..+---+|-++..|+.|..-.++ +.+.|... .|++.+-.++-++++.+|-- .+++.++.+
T Consensus 121 ~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 121 QENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp THHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 457999999996 56677788899999999988764 88888865 89999999999988888864 889999999
Q ss_pred HHHHHHHH
Q psy4701 106 LQQKVACE 113 (124)
Q Consensus 106 ~~Q~~a~e 113 (124)
+++.+|.|
T Consensus 200 iQklVAFE 207 (651)
T 3grl_A 200 IQKIVAFE 207 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.93 E-value=7.6 Score=28.39 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCC-------------hHHHHH
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG-------------EKQRQR 72 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~-------------~~~r~~ 72 (124)
.|..|+++|+++... +|. ..-+++++|..+|. +.+.--++.|..||.++..-+ .++|..
T Consensus 107 vr~~a~~aL~~l~~~-~~~------~~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~ 178 (280)
T 1oyz_A 107 VRATAIESTAQRCKK-NPI------YSPKIVEQSQITAF-DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178 (280)
T ss_dssp HHHHHHHHHHHHHHH-CGG------GHHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCc------ccHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHH
Confidence 456677777776532 111 01235677777775 445555667777776665421 123332
Q ss_pred HHHccchhhhhhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHH
Q psy4701 73 ILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAV 118 (124)
Q Consensus 73 Iv~~~G~s~IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a 118 (124)
.+. .++..-..+...++..+.+..++|...+..|+++|-..
T Consensus 179 a~~-----aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 179 AAF-----AININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHH-----HHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHH-----HHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 222 22222122455666667777777777777777766543
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=83.86 E-value=1.4 Score=36.88 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=35.4
Q ss_pred hHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhccchHHHHHHHHhCCcchHHHHHHHHHH
Q psy4701 36 VRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECI 115 (124)
Q Consensus 36 v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~i 115 (124)
++++..+|. |.+.-=+..|.+||+++...+++.- .+++.++....+.+++|...+..|+.+|
T Consensus 123 ~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~-----------------~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 123 CEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMV-----------------EDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp HHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCH-----------------HHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhc-----------------ccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 444666665 4555556666667666665543311 1123445555555555555555555555
Q ss_pred HHHh
Q psy4701 116 IAVA 119 (124)
Q Consensus 116 i~a~ 119 (124)
...+
T Consensus 185 ~~i~ 188 (591)
T 2vgl_B 185 SEIS 188 (591)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5443
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.39 E-value=6 Score=34.03 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChH-----------------
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEK----------------- 68 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~----------------- 68 (124)
-|..|+++|.++.-.. |.-+++ ..++.+..++. +.+--.++.|++||.+++....+
T Consensus 337 vr~~a~~~L~~la~~~-~~~~~~-----~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 337 LRKCSAAALDVLANVY-RDELLP-----HILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp HHHHHHHHHHHHHHHH-GGGGHH-----HHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-cHHHHH-----HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 4777889998887544 343343 25666777776 55788899999999999975532
Q ss_pred ------HHHHHHHcc--chhhhhhhhh--ccchHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 69 ------QRQRILKEK--GPLEVGSSIM--AKEGILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 69 ------~r~~Iv~~~--G~s~IEnlLl--s~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
+|......- ....++.... ..+.+++..+....+++...|..|+.+|.+-+
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 222211100 0011111001 12356677777777888888888988887655
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=76.60 E-value=13 Score=33.05 Aligned_cols=81 Identities=15% Similarity=0.004 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCC-CCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhh
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGE-RSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGS 84 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~-~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEn 84 (124)
-|..+.|.|.-++.. +|+.+-..= .....|+.|+.+|+ |...--+-||++.|++|+.-+.++++-+.-|+++..+=+
T Consensus 138 vR~~alqlL~~L~~~-r~~~~Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQ-LGPQVQQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHH-SHHHHHHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CcHHHHHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 467888888776654 665211100 12247999999998 555666779999999999999999888877777655544
Q ss_pred hhhc
Q psy4701 85 SIMA 88 (124)
Q Consensus 85 lLls 88 (124)
.+=+
T Consensus 216 Ii~~ 219 (651)
T 3grl_A 216 IITE 219 (651)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.69 E-value=16 Score=28.93 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhc---------------------
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA--------------------- 63 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLA--------------------- 63 (124)
..|..|.+++++++-...|...+ ...++.|..++. +.+..-+-.++-++..++
T Consensus 456 ~Vr~~a~~~l~~l~~~~~~~~~~-----~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 529 (588)
T 1b3u_A 456 AIREAATSNLKKLVEKFGKEWAH-----ATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG 529 (588)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHH-----HHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhCchhHH-----HHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence 45677888888887765554211 124555655554 333222222333333322
Q ss_pred CCChHHHHHHHHccc--hhhhhhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHH
Q psy4701 64 AIGEKQRQRILKEKG--PLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIA 117 (124)
Q Consensus 64 s~~~~~r~~Iv~~~G--~s~IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~ 117 (124)
.-++++|...++.-| ...++.-.+. +.++.....+.+.+|...+..|++++-.
T Consensus 530 d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKIGPILDNSTLQ-SEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp CSCHHHHHHHHHHHHHHGGGSCHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 222467766654211 1222222221 3455566677888899999999988743
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=73.23 E-value=2.1 Score=36.86 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHhHhhCCC--cccCCCCCCcchHhhH-hhcCCCCchhhhhHHHHHHHhhcCCC-hHHHHHHHHccch
Q psy4701 4 VKGKRQAAQGLARLGITLNPE--VAFPGERSLEVVRPLL-SLLHPEATALETFEGLMALCNLAAIG-EKQRQRILKEKGP 79 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~--l~F~~~~~~~~v~pL~-~LL~~~~~~l~~fEaLlALTNLAs~~-~~~r~~Iv~~~G~ 79 (124)
...|..|+.||+.|+- ||+ -.|-+ -..|+|++ .+|. |.+.-=+=||.-||.||+--+ .+++..+++...|
T Consensus 48 ~~~r~~A~~al~~l~~--~~~~~~l~~~---~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il 121 (684)
T 4gmo_A 48 AKSRTTAAGAIANIVQ--DAKCRKLLLR---EQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVL 121 (684)
T ss_dssp CSHHHHHHHHHHHHTT--SHHHHHHHHH---TTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHc--CcHHHHHHHH---cCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChH
Confidence 4568889999999873 554 22332 33788865 4565 555545678999999999764 5999999887777
Q ss_pred hhhhhhh
Q psy4701 80 LEVGSSI 86 (124)
Q Consensus 80 s~IEnlL 86 (124)
+.+..++
T Consensus 122 ~~L~~~l 128 (684)
T 4gmo_A 122 TAIEHAA 128 (684)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666553
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=72.88 E-value=20 Score=27.35 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhh
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGS 84 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEn 84 (124)
.-|..|..+|..+.-... .-+++ ..++.+...|. +.+-..+..|+++|.+++...+ ...+..
T Consensus 343 ~~r~~a~~~L~~l~~~~~-~~~~~-----~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~-----------~~~~~~ 404 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCE-DDIVP-----HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPE-----------PSQLKP 404 (462)
T ss_dssp SHHHHHHHHHHHHHHHTT-TTHHH-----HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSC-----------TTTTCT
T ss_pred hHHHHHHHHHHHHHHhcc-HHHHH-----HHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCc-----------HHHHHH
Confidence 346667777777665432 22222 14455566676 5677888999999999996322 011122
Q ss_pred hhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 85 SIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 85 lLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
.+ ..++...+.+.++++...+..|+.+|-.-+.
T Consensus 405 ~l---~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 405 LV---IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TT---TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22 4578888888888888888888888776553
No 54
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=71.49 E-value=13 Score=33.61 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
...|-.++|+|+.+ +..++. ...+.-|+..+... .-=-++=+|++|--+ .
T Consensus 242 APVRETaAQtLGaL-~hLp~e--------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL--------------------~ 291 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP--------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL--------------------K 291 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS--------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT--------------------G
T ss_pred eehHHHHHHHHHHH-HhCChh--------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH--------------------H
Confidence 45688999999999 888887 33555555444311 122233455555555 2
Q ss_pred hhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 84 SSIMAKEGILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 84 nlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
+++..-+.+++.++.-.++.|...+.|||++++-.+
T Consensus 292 DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 292 EFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 333334667777788788889999999999998665
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=64.03 E-value=38 Score=29.00 Aligned_cols=98 Identities=8% Similarity=0.153 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCC----CCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchh
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGE----RSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPL 80 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~----~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s 80 (124)
..|..|..+|.+|+-...+. |.+. .....+++|..++. +.+.--+++|+-+|.++.+..+..
T Consensus 143 ~~r~~al~~L~~i~~~~~~~--~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~----------- 208 (852)
T 4fdd_A 143 NTCEGAFGALQKICEDSAEI--LDSDVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQA----------- 208 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTTH--HHHCSSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHH-----------
T ss_pred HHHHHHHHHHHHHHHHhHHH--hchhhhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHH-----------
Confidence 34556677777777655433 2111 12235666777776 444445677888887776543210
Q ss_pred hhhhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 81 EVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 81 ~IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+ .-.-+.+++..+.+++++|...+..|++++...+.
T Consensus 209 -~---~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 209 -L---MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp -H---HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 0 00112466777778888888888888888876653
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=62.43 E-value=68 Score=26.78 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhc--------------------
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA-------------------- 63 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLA-------------------- 63 (124)
+..|..++++++.|.-.-=|. ..--+.++.|...+..+.+.-.+..++.+|..+.
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~-----~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~ 183 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH-----GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIA 183 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-----TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCcc-----cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Confidence 455788899999987764332 1233467777777753312222233333333222
Q ss_pred ------CC--ChHHHHHHHHccc-h-hhhhhhhhc---cchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 64 ------AI--GEKQRQRILKEKG-P-LEVGSSIMA---KEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 64 ------s~--~~~~r~~Iv~~~G-~-s~IEnlLls---~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+- ++++|...++.-+ + ..++..+-. .+.+++.....+++++...+..+++++...+.
T Consensus 184 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 184 IVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 3466666655311 1 112211111 13477777888899999999999999877654
No 57
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=61.30 E-value=9.7 Score=25.03 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhc
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 63 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLA 63 (124)
+..|..|+.+|+++. + -+++++|..+|. |.+..-+++|..||.++.
T Consensus 56 ~~vR~~A~~aL~~~~---~----------~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 56 WRIRGAAAWIIGNFQ---D----------ERAVEPLIKLLE-DDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHHHHHHGGGC---S----------HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC---C----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 346778888888764 1 246888999886 555666778888888877
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=53.48 E-value=71 Score=24.23 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCC-chhhhhHHHHHHHhhcCCChHHHHHHHHccchhhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEA-TALETFEGLMALCNLAAIGEKQRQRILKEKGPLEV 82 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~-~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~I 82 (124)
+..|..|.++|.+++-...|.. |..+ .-..++.+..+|..+. +.--+++|+-+|+++...-++.- . .|. .
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~-~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~----~--~~~-~ 214 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDPEQ-LQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF----D--KES-E 214 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGG-TGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH----T--SHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCchh-hHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh----h--hhH-H
Confidence 3456778889988887665654 2221 1235666777776442 55567889999999875422110 0 010 0
Q ss_pred hhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHhhh
Q psy4701 83 GSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASK 121 (124)
Q Consensus 83 EnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~sk 121 (124)
. +-+++......+++|...+..+++++...+.+
T Consensus 215 ~------~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 215 R------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp H------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 1 11455555677888888888899988776643
No 59
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=53.09 E-value=41 Score=24.07 Aligned_cols=55 Identities=22% Similarity=0.080 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcC
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 64 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs 64 (124)
.+..|.++++.+.....|. |.+ ..-..+++|...+. |.+.-=+--|.-||.+++.
T Consensus 73 V~~~a~~~l~~la~~l~~~--~~~-~~~~ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKR--FSN-YASACVPSLLEKFK-EKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGG--GHH-HHHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh--HHH-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 4567888888888766553 443 22447888999987 4443333445555555554
No 60
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=51.02 E-value=21 Score=27.97 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=27.1
Q ss_pred hHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHH
Q psy4701 39 LLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILK 75 (124)
Q Consensus 39 L~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~ 75 (124)
|+.||+ |.+..=.--|.=+|+|||-.++.+|+-|.+
T Consensus 186 L~aLL~-D~deiVRaSaVEtL~~lA~~npklRkii~~ 221 (253)
T 2db0_A 186 IINLLH-DGDEIVRASAVEALVHLATLNDKLRKVVIK 221 (253)
T ss_dssp HHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHHHHH
Confidence 455566 666666666777899999999998887765
No 61
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=50.85 E-value=22 Score=29.60 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChH---------HHHHHH
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEK---------QRQRIL 74 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~---------~r~~Iv 74 (124)
+.-|..|+.++.||.- .+|.++-. .+.++.|..+|. |.+.-=...|+.||.+++.-+++ .-.+++
T Consensus 135 ~~VRk~A~~al~~i~~-~~p~~~~~----~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll 208 (591)
T 2vgl_B 135 PYVRKTAAVCVAKLHD-INAQMVED----QGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLL 208 (591)
T ss_dssp HHHHHHHHHHHHHHHH-SSCCCHHH----HHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-hChhhccc----ccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHH
Confidence 4567889999999876 67875421 236788999997 66767778999999999876541 123333
Q ss_pred Hc----cchhhh------hhhhhc----cchHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 75 KE----KGPLEV------GSSIMA----KEGILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 75 ~~----~G~s~I------EnlLls----~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
+. .-|..+ ..+.-. ...+++....+.++.+......|+.+|.+-.
T Consensus 209 ~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 209 TALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 21 122111 111101 1346677777778888888888888888743
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=49.78 E-value=40 Score=26.35 Aligned_cols=92 Identities=23% Similarity=0.315 Sum_probs=56.5
Q ss_pred CchhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhh
Q psy4701 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLE 81 (124)
Q Consensus 2 ~~~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~ 81 (124)
|-++.|+.-+-+|-+|.. .||++.= +++|-+.++|. +.+.- +=|-||.=++.+++..-+.+. .+
T Consensus 119 gd~kikIn~~yaLeeIar-anP~l~~------~v~rdi~smlt-skd~~---Dkl~aLnFi~alGen~~~yv~--Pf--- 182 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAK-ANPMLMA------SIVRDFMSMLS-SKNRE---DKLTALNFIEAMGENSFKYVN--PF--- 182 (253)
T ss_dssp CSHHHHHHHHHHHHHHHH-HCHHHHH------HHHHHHHHHTS-CSSHH---HHHHHHHHHHTCCTTTHHHHG--GG---
T ss_pred CCccceecHHHHHHHHHH-hChHHHH------HHHHHHHHHhc-CCChH---HHHHHHHHHHHHhccCccccC--cc---
Confidence 667788888888888764 6888742 37888999987 55533 445556556666653333222 23
Q ss_pred hhhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
+.|.+++...+|++.-.-|+|.++|-|-
T Consensus 183 -----------LprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 183 -----------LPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp -----------HHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred -----------hHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 4455555555555555556666666653
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=46.10 E-value=78 Score=22.53 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=63.6
Q ss_pred chhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCC-ChHH---HH----HHH
Q psy4701 3 TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAI-GEKQ---RQ----RIL 74 (124)
Q Consensus 3 ~~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~-~~~~---r~----~Iv 74 (124)
.|.-|.-|+.+|.+++- .+|.+. .....+.++.|..+|..|.+.--.-.|+-+|.-||.. .++. -. .|+
T Consensus 28 ~w~~R~~a~~~L~~l~~-~~~~~~--~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLT-DHPKLE--NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SHHHHHHHHHHHHHHHH-HCSSBC--CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-cCCCCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 36778889999998764 467653 2233457777888884244433344555555555521 1111 01 111
Q ss_pred ----------Hccchhhhhhhhh--ccchHHHHHHHHhCCcchHHHHHHHHHHHHHhhh
Q psy4701 75 ----------KEKGPLEVGSSIM--AKEGILEMVLVMANTEDILQQKVACECIIAVASK 121 (124)
Q Consensus 75 ----------~~~G~s~IEnlLl--s~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~sk 121 (124)
++..-..+..++- +-..+++.......+++...+..++++|....+.
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 1111111122111 1234677777778888888888888887775533
No 64
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=44.35 E-value=94 Score=22.96 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHH-HhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcC------CChHHHH----H
Q psy4701 4 VKGKRQAAQGLAR-LGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA------IGEKQRQ----R 72 (124)
Q Consensus 4 ~~~~~~A~qaLAk-ilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs------~~~~~r~----~ 72 (124)
|+-|..|..+|+. ++- -+|.+.-...+..+.++-|...+..|.+.--...|+-+|..||+ +...... .
T Consensus 30 w~eRk~al~~L~~~~~~-~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ 108 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLS-QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTP 108 (249)
T ss_dssp HHHHHHHHHHHHHHTGG-GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 5677888899998 764 47887632223345788888888435554444566666655552 2101111 1
Q ss_pred HH---Hc-------cchhhhhhhhhc---------cchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 73 IL---KE-------KGPLEVGSSIMA---------KEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 73 Iv---~~-------~G~s~IEnlLls---------~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
|+ ++ ..-..++.++-. -..+++..+....+++...+..+..+|...+.
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11 11 111122222221 23689999999999999888888888877764
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=42.17 E-value=60 Score=27.19 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCC-CchhhhhHHHHHHHhhcCCCh-HHHHHHHHccchhh
Q psy4701 4 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPE-ATALETFEGLMALCNLAAIGE-KQRQRILKEKGPLE 81 (124)
Q Consensus 4 ~~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~-~~~l~~fEaLlALTNLAs~~~-~~r~~Iv~~~G~s~ 81 (124)
+..|..|.++|.+++-..+|.. |.. ..-..++.+...+..+ .+.--++.|+-+|.++++.-+ ...... |
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~-~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-----~-- 214 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDPEQ-LQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES-----E-- 214 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHH-HGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH-----H--
T ss_pred HHHHHHHHHHHHHHHHhcCHhh-HHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH-----H--
Confidence 3457778899999887776654 332 1233566677777533 245557788888888876421 111000 0
Q ss_pred hhhhhhccchHHHHHHHHhCCcchHHHHHHHHHHHHHhh
Q psy4701 82 VGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120 (124)
Q Consensus 82 IEnlLls~n~~Lqral~M~~S~d~~~Q~~a~e~ii~a~s 120 (124)
.+.+++.....+.++|...+..+++++...++
T Consensus 215 -------~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 215 -------RHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp -------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 11255556666777777778888888876654
No 66
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.81 E-value=1.3e+02 Score=25.20 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChH
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEK 68 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~ 68 (124)
.-|..|+.++.|+.- .+|.++= ..++.+..+|. |.+.-=.+-|+-+|.-++..+++
T Consensus 157 ~VRk~A~~al~~l~~-~~p~~v~------~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 157 YLRKKAALCAVHVIR-KVPELME------MFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGGG------GGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHHH-HChHHHH------HHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChH
Confidence 456778888888775 5676541 34555666775 55555567778888888776544
No 67
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.22 E-value=15 Score=31.00 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhhh
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGS 84 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEn 84 (124)
.-|..|.++|++|. +|.++ -+.++++..+|. +.+.-=+.-|++||.++...+++... ..+..+..
T Consensus 122 ~vr~lAL~~L~~i~---~~~~~------~~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~ 186 (618)
T 1w63_A 122 FVQGLALCTLGCMG---SSEMC------RDLAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKN 186 (618)
T ss_dssp HHHHHHHHHHHHHC---CHHHH------HHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTT
T ss_pred hHHHHHHHHHHhcC---CHHHH------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHH
Confidence 45677888888886 34432 135778888886 56677778899999999876654321 33344444
Q ss_pred hhhccc
Q psy4701 85 SIMAKE 90 (124)
Q Consensus 85 lLls~n 90 (124)
++-+.+
T Consensus 187 lL~D~d 192 (618)
T 1w63_A 187 LLNEKN 192 (618)
T ss_dssp STTCCC
T ss_pred HhCCCC
Confidence 444443
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=39.13 E-value=36 Score=30.47 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHhHhhCCCc---ccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhc
Q psy4701 5 KGKRQAAQGLARLGITLNPEV---AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 63 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l---~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLA 63 (124)
..|..|+++|+.+.-...|.- -|.....-+.+++|...+..+.+.--+.+|+-+|.+++
T Consensus 101 ~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 101 QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 346778899998887665541 01111123478888888863344556777888888876
No 69
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=37.96 E-value=1.1e+02 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=19.4
Q ss_pred hHHHHHHHHhCCcchHHHHHHHHHHHHHh
Q psy4701 91 GILEMVLVMANTEDILQQKVACECIIAVA 119 (124)
Q Consensus 91 ~~Lqral~M~~S~d~~~Q~~a~e~ii~a~ 119 (124)
.+++....++.+++......+++++-..+
T Consensus 126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCY 154 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHGGGHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 45666777777777777777776655443
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=37.41 E-value=1.8e+02 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCC
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~ 66 (124)
.-|..|.++|..+.-... .-+++ ..++.+...|. +.+.-.+..|+.+|.+++...
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~~~~~-----~~l~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-DDIVP-----HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHH-----HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHCc-HhhHH-----HHHHHHHHHcc-CCChHHHHHHHHHHHHHHcCC
Confidence 345566677766654432 21111 24444555665 556777899999999999753
No 71
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=31.15 E-value=71 Score=27.03 Aligned_cols=76 Identities=12% Similarity=-0.017 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhc--CCCCchhhhhHHHHHHHhhcCCChHHHHHHHHccchhhhh
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLL--HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVG 83 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL--~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IE 83 (124)
-|-.|.++|++|. +|.++- ..++++..+| . |.+.-=+--|.+|+.++...+++.-.. +.....+.
T Consensus 127 ir~lALr~L~~i~---~~e~~~------~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~~~~~---~~~~~~l~ 193 (621)
T 2vgl_A 127 FMGLALHCIANVG---SREMAE------AFAGEIPKILVAG-DTMDSVKQSAALCLLRLYRTSPDLVPM---GDWTSRVV 193 (621)
T ss_dssp HHHHHHHHHHHHC---CHHHHH------HHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGGGCCC---CSCHHHHH
T ss_pred HHHHHHHHhhccC---CHHHHH------HHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhChhhcCc---hhHHHHHH
Confidence 4567788888773 455432 3667777777 4 666666677888888887766543210 13345555
Q ss_pred hhhhccchHHH
Q psy4701 84 SSIMAKEGILE 94 (124)
Q Consensus 84 nlLls~n~~Lq 94 (124)
.++-+.+..+.
T Consensus 194 ~lL~d~d~~V~ 204 (621)
T 2vgl_A 194 HLLNDQHLGVV 204 (621)
T ss_dssp HHTTCSCHHHH
T ss_pred HHhCCCCccHH
Confidence 55544343333
No 72
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=29.26 E-value=45 Score=26.86 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHccchhhhhhhh
Q psy4701 51 ETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSI 86 (124)
Q Consensus 51 ~~fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlL 86 (124)
+.+.++..|+|+-++++..-+++..+ ||..+|++.
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~-Gi~tledL~ 130 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE-GLRTLDELR 130 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT-TCCSHHHHH
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc-CCCCHHHHH
Confidence 56677999999999999999999996 999999988
No 73
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.95 E-value=56 Score=22.96 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=32.4
Q ss_pred cCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCChHHHHHHH
Q psy4701 27 FPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRIL 74 (124)
Q Consensus 27 F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv 74 (124)
|++...-++++-+..+|.. .|..||..+ |-||.--+.+-.+.++
T Consensus 65 Fsk~~~~e~~~~v~~lL~~---~L~~fEia~-L~NL~P~t~dEak~LI 108 (135)
T 3h0g_D 65 FARFKTAEATYACERILGN---RFHKFERAQ-LGTLCCEDAEEARTLI 108 (135)
T ss_dssp TCTTCSHHHHHHHHHHCCC---CSCHHHHHH-HHHHCCCCHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHHHh---cCCHHHHHH-HccCCCCCHHHHHHHH
Confidence 5655556688888888874 899999966 9999987754444444
No 74
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=22.78 E-value=3.3e+02 Score=22.56 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCCC
Q psy4701 6 GKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66 (124)
Q Consensus 6 ~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~~ 66 (124)
-|..|.++|.++.-... .-+++ ..++.+...+. +.+--.+..|+.+|.+++...
T Consensus 347 ~r~~a~~~L~~l~~~~~-~~~~~-----~l~~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCG-NHILE-----PVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHHHHHHHG-GGGHH-----HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHcc-HhHHH-----HHHHHHHHHcC-CCChhHHHHHHHHHHHHHcCC
Confidence 45566777777665432 22222 23444555665 445667888999999999763
No 75
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=21.59 E-value=4.3e+02 Score=23.51 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhHhhCCCcccCCCCCCcchHhhHhhcCCCCchhhhhHHHHHHHhhcCC-ChHHHHHHH
Q psy4701 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAI-GEKQRQRIL 74 (124)
Q Consensus 5 ~~~~~A~qaLAkilIs~nP~l~F~~~~~~~~v~pL~~LL~~~~~~l~~fEaLlALTNLAs~-~~~~r~~Iv 74 (124)
..|+.|...|.+.+-. |...+.....-..+++|...|. +.+.--+..|+++|.+++.. +++.+..|+
T Consensus 21 ~~R~~A~~~L~~~l~~--~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~ 88 (1230)
T 1u6g_C 21 DFRFMATNDLMTELQK--DSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88 (1230)
T ss_dssp HHHHHHHHHHHHHTSS--SCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcc--cccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3456666777775522 2221221112246888999997 66777778899999999854 444333333
No 76
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=21.34 E-value=62 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHccchhhhhhhhhc
Q psy4701 53 FEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMA 88 (124)
Q Consensus 53 fEaLlALTNLAs~~~~~r~~Iv~~~G~s~IEnlLls 88 (124)
++++.-|+++-++++..-+++..+ ||..+|++.-.
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a 128 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE-GIKTLEDLRKN 128 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTC
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHh
Confidence 889999999999999999999986 99999998764
Done!