RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4701
(124 letters)
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 76.4 bits (187), Expect = 1e-17
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 22/124 (17%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLL-------------HPEATALE 51
+ + L R+ I NP + F +L + L LL + +
Sbjct: 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575
Query: 52 TFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVA 111
+E L+AL NLA+ + + K I++ + + + E++ Q+
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKH---------IVSTKVYWSTIENLMLDENVPLQRST 626
Query: 112 CECI 115
E I
Sbjct: 627 LELI 630
Score = 39.0 bits (90), Expect = 1e-04
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 78 GPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
+ S I +G+ ++ E LQ +++ A +
Sbjct: 242 SLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET 288
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 66.0 bits (160), Expect = 5e-14
Identities = 52/86 (60%), Positives = 67/86 (77%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
GT KGKR A Q LAR+GIT+NPEV+F G+RSL+V+RPLL+LL + TALE FE LMAL N
Sbjct: 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIM 87
LA++ E RQRI+KE+G ++ +M
Sbjct: 608 LASMNESVRQRIIKEQGVSKIEYYLM 633
Score = 36.4 bits (83), Expect = 0.001
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 9 QAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEK 68
A+ LAR+ + + A R + + + +A+ L
Sbjct: 223 IASVCLARIYENMYYDEA--KARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLN---- 276
Query: 69 QRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
GPL+VG+ ++A+EGIL+M+L MA T+D LQQ+VACEC+IA +SKKDK
Sbjct: 277 ---------GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.026
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 11 AQGLARLGIT--LNPEVAFPGERSLEVVRPLLSLLHPEATALETFE--------GLMALC 60
A+G+ ++G+ E+AF LL LL PE L GL +
Sbjct: 686 AEGIEKMGVRTFSQKEMAFN----------LLGLLTPEVVELCQKSPVMADLNGGLQFVP 735
Query: 61 NLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKV 110
L K R+ +++ EV ++ + E LE +V N+ D +V
Sbjct: 736 ELKEFTAKLRKELVETS---EVRKAV-SIETALEHKVVNGNSADAAYAQV 781
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 31.5 bits (72), Expect = 0.045
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 19/120 (15%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLL-HPEATALETFEGLMALC 60
+ ++A L+ + N ++ + L+ LL P L+ E L AL
Sbjct: 150 PNEQILQEALWALSNIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQ--EALWALS 205
Query: 61 NLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120
N+A+ G +Q+Q + + G LE + + + E+ QK A E + + S
Sbjct: 206 NIASGGNEQKQAV--------------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 26.9 bits (60), Expect = 1.8
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 36 VRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILE 94
+ L+ LL P L+ E L AL N+A+ G +Q Q ++ G L
Sbjct: 98 LPALVQLLSSPNEQILQ--EALWALSNIASGGNEQIQAVI--------------DAGALP 141
Query: 95 MVLVMANTEDILQQKVACECIIAVASKKD 123
++ + ++ + + A + +AS +
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGN 170
Score = 26.5 bits (59), Expect = 2.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78
+ L+ LL P L E L AL N+A+ G +Q Q ++
Sbjct: 55 ALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQIQAVIDAGA 97
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 29.9 bits (68), Expect = 0.16
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
+ + A G ++GI LN + +P
Sbjct: 215 RDDFKPASGDGQIGIVLNGDFTYP 238
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 30.0 bits (67), Expect = 0.16
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 32 SLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKE 90
+ SLL +P+ + E + N+ A + Q Q+++
Sbjct: 314 DAGALAVFPSLLTNPKTNIQK--EATWTMSNITAGRQDQIQQVV--------------NH 357
Query: 91 GILEMVLVMANTEDILQQKVACECIIAVASKKD 123
G++ ++ + + D QK A I S
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390
Score = 27.7 bits (61), Expect = 1.0
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 7 KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66
+ QA Q +L ++ + ++ +S L + FE AL N+A+
Sbjct: 74 QLQATQAARKL-LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132
Query: 67 EKQRQRILKEKG 78
+Q + ++
Sbjct: 133 SEQTKAVVDGGA 144
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 29.6 bits (66), Expect = 0.23
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 17/118 (14%)
Query: 7 KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66
+AA + +L + RS ++V ++ + L NL+
Sbjct: 167 VNKAAVMVHQL--SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR 224
Query: 67 EKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
E + K G + ++ M + A + + ++
Sbjct: 225 EGLLA---------------IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267
Score = 26.1 bits (57), Expect = 4.0
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 34 EVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78
++ L+ LL + + L NL K + + + G
Sbjct: 399 GLLGTLVQLLGSDDINVVT--CAAGILSNLTCNNYKNKMMVCQVGG 442
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 29.5 bits (66), Expect = 0.27
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGIL 93
++ LL LL P+ + + E + N+ A Q Q ++ I
Sbjct: 277 ALQSLLHLLSSPKESIKK--EACWTISNITAGNRAQIQTVI--------------DANIF 320
Query: 94 EMVLVMANTEDILQQKVACECIIAVASKKD 123
++ + T + +K A I S
Sbjct: 321 PALISILQTAEFRTRKEAAWAITNATSGGS 350
Score = 28.7 bits (64), Expect = 0.53
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 1 MGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALC 60
+ A L+ L + P V R L+ LL + + L A+
Sbjct: 203 VSDTDVLADACWALSYL--SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS-PALRAVG 259
Query: 61 NLAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120
N+ + Q Q IL L+ +L + ++ +K AC I + +
Sbjct: 260 NIVTGDDIQTQVIL--------------NCSALQSLLHLLSSPKESIKKEACWTISNITA 305
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 28.8 bits (65), Expect = 0.38
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGIL 93
+ L+ LL P L+ E L AL N+A+ G +Q Q + G L
Sbjct: 55 ALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQIQAV--------------IDAGAL 98
Query: 94 EMVLVMANTEDILQQKVACECI 115
++ + ++ + + A +
Sbjct: 99 PALVQLLSSPNEQILQEALWAL 120
Score = 28.4 bits (64), Expect = 0.47
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGIL 93
+ L+ LL P L+ E L AL N+A+ G +Q Q + G L
Sbjct: 97 ALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQIQAV--------------IDAGAL 140
Query: 94 EMVLVMANTEDILQQKVACECIIAVAS 120
++ + ++ + + A + +AS
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIAS 167
Score = 28.0 bits (63), Expect = 0.71
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGIL 93
+ L+ LL P L+ E L AL N+A+ G +Q+Q + + G L
Sbjct: 139 ALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQKQAV--------------KEAGAL 182
Query: 94 EMVLVMANTEDILQQKVACECIIAVAS 120
E + + + E+ QK A E + + S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 28.7 bits (64), Expect = 0.52
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 31 RSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78
R ++ LL L T + L NL+A K ++ +
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVS--NACGTLWNLSARNPKDQEALWDMGA 306
Score = 27.9 bits (62), Expect = 0.91
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
+ ++ A L L + + R + V+ L+ L AL N
Sbjct: 139 ESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120
L+A + + I G L ++ + + T + + + V+S
Sbjct: 198 LSAHCTENKADICAVDGALAF---------LVGTLTYRSQTNTLAIIESGGGILRNVSS 247
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 28.2 bits (64), Expect = 0.66
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
R+ +GI N A P
Sbjct: 208 RELGIS-GEIGIAPNTSWAVP 227
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 28.4 bits (63), Expect = 0.73
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 17/118 (14%)
Query: 7 KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66
+AA + +L + RS ++V ++ + L NL+
Sbjct: 31 VNKAAVMVHQL--SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88
Query: 67 EKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
E + K G + ++ M + A + + ++
Sbjct: 89 EGLLA---------------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 131
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78
++ L+ LL + + L NL K + + + G
Sbjct: 264 LLGTLVQLLGSDDINVVT--CAAGILSNLTCNNYKNKMMVCQVGG 306
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 28.0 bits (62), Expect = 0.74
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 31 RSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78
R ++ LL L T + L NL+A K ++ +
Sbjct: 376 RENNCLQTLLQHLKSHSLTIVS--NACGTLWNLSARNPKDQEALWDMGA 422
Score = 25.7 bits (56), Expect = 4.5
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 10/119 (8%)
Query: 2 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCN 61
+ ++ A L L + R + V+ L+ L AL N
Sbjct: 255 ESEDLQQVIASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVKKESTLKSVLSALWN 313
Query: 62 LAAIGEKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVAS 120
L+A + + I G L ++ + + T + + + V+S
Sbjct: 314 LSAHCTENKADICAVDGALAF---------LVGTLTYRSQTNTLAIIESGGGILRNVSS 363
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 27.5 bits (62), Expect = 1.1
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFPGERSLE 34
+ + + QG ++GITL+ P + +
Sbjct: 216 RDEFKEKQG-GQIGITLDSHWLIPYDDTDA 244
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 27.5 bits (62), Expect = 1.2
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
R+ Q ++GITLN +
Sbjct: 209 RELEQD-GQIGITLNLSTCYS 228
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 27.5 bits (62), Expect = 1.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
R A+ +TLN P
Sbjct: 221 RDRLPADAQCSVTLNIHHVRP 241
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFPGERSLE 34
+ K QAAQ ++GI L+ S E
Sbjct: 232 RTKYQAAQQ-GKVGIVLDFNWYEALSNSTE 260
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 27.2 bits (61), Expect = 1.6
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 7 KRQAAQGLARLGITLNPEVAFP 28
K R+G+ LN P
Sbjct: 296 KYHKGAD-GRIGLALNVFGRVP 316
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 27.1 bits (61), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
R+ ++GI N A P
Sbjct: 208 RELGTS-GQIGIAPNVSWAVP 227
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 27.1 bits (61), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
R+ +GITLN A+P
Sbjct: 216 REEDLP-GEIGITLNLTPAYP 235
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 27.1 bits (61), Expect = 1.7
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 8 RQAAQGLARLGITLNPEVAFPGERSLE 34
R+ + ++GI N P E
Sbjct: 231 RETVKD-GKIGIVFNNGYFEPASEKEE 256
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 26.8 bits (60), Expect = 1.8
Identities = 3/24 (12%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
K + +++G+ + P
Sbjct: 291 KARYNMHGD-SKIGMAFDVMGYEP 313
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 26.9 bits (60), Expect = 2.2
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
K K Q Q ++GI+ + P
Sbjct: 258 KNKFQRGQE-GQIGISHATQWMEP 280
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 26.7 bits (60), Expect = 2.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 7 KRQAAQGLARLGITLNPEVAFP 28
+ +A QG ++GI+LN P
Sbjct: 220 EFRAEQG-GKVGISLNINWCEP 240
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 26.8 bits (60), Expect = 2.4
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
K K QA Q ++GITL P
Sbjct: 253 KAKYQALQK-GKIGITLVSHWFVP 275
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 26.7 bits (59), Expect = 2.4
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 VVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKG 78
++ L+ LL + + L NL K + + + G
Sbjct: 267 LLGTLVQLLGSDDINVVT--CAAGILSNLTCNNYKNKMMVCQVGG 309
Score = 26.7 bits (59), Expect = 2.6
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 17/118 (14%)
Query: 7 KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66
+AA + +L + RS ++V ++ + L NL+
Sbjct: 34 VNKAAVMVHQL--SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91
Query: 67 EKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECIIAVASKKDK 124
E + K G + ++ M + A + + ++
Sbjct: 92 EGLLA---------------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 26.8 bits (58), Expect = 2.4
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 34 EVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGIL 93
EVVR +SLL T A+ NL A + I S + +E L
Sbjct: 308 EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI----------RSALRQEKAL 357
Query: 94 EMVLVMANTEDILQQKVACECIIAVA 119
+ + E K A + +A
Sbjct: 358 SAIADLLTNEHERVVKAASGALRNLA 383
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 26.7 bits (60), Expect = 2.5
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
+ K +A Q +LGI + P
Sbjct: 233 RTKYKATQN-GQLGIAFDVMWFEP 255
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 26.4 bits (59), Expect = 2.5
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
+ K Q Q +GI LN P
Sbjct: 257 RNKFQKCQE-GEIGIVLNSMWMEP 279
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 26.3 bits (59), Expect = 2.8
Identities = 3/22 (13%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 7 KRQAAQGLARLGITLNPEVAFP 28
+ Q ++ I+++ P
Sbjct: 212 MFKPTQN-GKISISISGVFFMP 232
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 26.3 bits (59), Expect = 2.9
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
++ ++GITLN E
Sbjct: 216 KEKGLT-GKIGITLNMEHVDA 235
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 26.4 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 5 KGKRQAAQGLARLGITLNPEVAFP 28
K K QA+Q +GITL P
Sbjct: 238 KTKYQASQN-GIIGITLVSHWFEP 260
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
{Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Length = 465
Score = 25.9 bits (58), Expect = 4.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 8 RQAAQGLARLGITLNPEVAFP 28
R + +++GITLN +P
Sbjct: 229 RALSPAGSQMGITLNFNTIYP 249
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 25.0 bits (55), Expect = 7.3
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 28 PGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 64
G R + + L + +P A L T L + +
Sbjct: 244 LGPRLPDGLAALSAAFYPSAKPLSTEAAHPLLGDDST 280
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 24.9 bits (54), Expect = 9.4
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 31 RSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRILKEKGP------LEVG 83
L + LL LL AL NL + + + G L+
Sbjct: 49 NQLRGILKLLQLLKVQNEDVQR--AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT 106
Query: 84 SSIMAKEGILEMVLVMANTEDILQQKVACECIIAVA 119
+ K+ I +L ++ D L+ + E ++ +
Sbjct: 107 RDLETKKQITG-LLWNLSSNDKLKNLMITEALLTLT 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.364
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,798,392
Number of extensions: 101142
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 68
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)