RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4701
(124 letters)
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 26.3 bits (57), Expect = 0.97
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 46 EATALETFEGLMALCNLAAIGEKQ 69
E ET+EG+ AA K+
Sbjct: 294 EQAGFETWEGIKVGARAAAAAAKE 317
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 26.4 bits (56), Expect = 1.0
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 17/109 (15%)
Query: 7 KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66
+AA + +L A RS ++V ++ + L NL+
Sbjct: 34 VNKAAVMVHQLSKKEASRHAI--MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91
Query: 67 EKQRQRILKEKGPLEVGSSIMAKEGILEMVLVMANTEDILQQKVACECI 115
E + K G + ++ M + A +
Sbjct: 92 EGLLA---------------IFKSGGIPALVKMLGSPVDSVLFYAITTL 125
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 26.3 bits (56), Expect = 1.1
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 7 KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 66
+ QA Q +L ++ + ++ +S L + FE AL N+A+
Sbjct: 30 QLQATQAARKL-LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 88
Query: 67 EKQRQRILKEKG 78
+Q + ++
Sbjct: 89 SEQTKAVVDGGA 100
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 26.0 bits (56), Expect = 1.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 55 GLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGI 92
GL LA Q Q I+ KGP+ GS+ A+ GI
Sbjct: 19 GLSLALRLA----DQHQVIVLSKGPVTEGSTFYAQGGI 52
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 25.1 bits (53), Expect = 3.3
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 55 GLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGI 92
GL A +K I+ P++ S A+ G+
Sbjct: 17 GLRAAVATQ---QKGLSTIVLSLIPVKRSHSAAAQGGM 51
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 24.8 bits (53), Expect = 3.4
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 55 GLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEGI 92
G+ A ++ + + L K ++ A+ GI
Sbjct: 19 GMRAALQIS---QSGQTCALLSKVFPTRSHTVSAQGGI 53
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 24.9 bits (53), Expect = 3.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 8 RQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLH 44
+ A+ + R G+ N + E SL+ P+L L
Sbjct: 58 VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 57
Score = 23.5 bits (51), Expect = 3.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 62 LAAIGEKQRQRILKEKGPLEV 82
+ +G+K+ Q +++E G E
Sbjct: 13 ILGLGKKEIQDMIEEDGQAEA 33
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 24.8 bits (52), Expect = 4.2
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 5/50 (10%)
Query: 34 EVVRPLLSLLHPEATALETFEG-----LMALCNLAAIGEKQRQRILKEKG 78
+V + LL E + NL A + ++
Sbjct: 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420
Score = 24.0 bits (50), Expect = 7.9
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 31 RSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKE 90
L + L+ LL ++ AL NL + ++ G E S +
Sbjct: 41 YQLGGICKLVDLLRSPNQNVQQ-AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG 99
Query: 91 GILEMVLVMANTEDILQQKVACECIIAVA 119
+ ++ E +IA A
Sbjct: 100 NAEIQKQLTGLLWNLSSTDELKEELIADA 128
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 62
Score = 22.7 bits (49), Expect = 6.6
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 62 LAAIGEKQRQRILKEKGPLEV 82
L + +++ IL E G +++
Sbjct: 18 LKTLPDEEVDSILAEDGEIDM 38
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of
gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 24.1 bits (51), Expect = 6.8
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 8 RQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLL 43
Q A+ GI + V E+S+++ +L++L
Sbjct: 59 NQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVL 94
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 24.1 bits (51), Expect = 7.2
Identities = 16/59 (27%), Positives = 20/59 (33%)
Query: 33 LEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRILKEKGPLEVGSSIMAKEG 91
L V+ L L E A+ E A A G L E P E + I A+
Sbjct: 139 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 197
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 23.8 bits (50), Expect = 8.3
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 8 RQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLL 43
+ A G +LGI V E + +L
Sbjct: 61 DRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALF 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.364
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,344
Number of extensions: 16028
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 14
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)