BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4702
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 41 SVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELME 99
SVS C +L +W+DI ++A+P VQHR +VI+ N+++AG+E+A+++ T++ME
Sbjct: 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIME 753
Query: 100 ILMALTLLEGE---EVRKLALQALA 121
+L L L + + R++A Q LA
Sbjct: 754 LLSGLGQLPDDTRAKAREVATQCLA 778
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
Q+L+ P+ + AL + NI S G E + V +E L L E E+++K A +AL
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Query: 121 AK 122
K
Sbjct: 205 EK 206
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
Q+L+ P+ + AL + NI S G E + V +E L L E E+++K A +AL
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Query: 121 AK 122
K
Sbjct: 247 EK 248
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
Q+L+ P+ + AL + NI S G E + V +E L L E E+++K A +AL
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Query: 121 AK 122
K
Sbjct: 205 EK 206
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 51 LEKNWVDIFKQILAHPDVGVQHRALVIVGNILSA 84
+E+ +VD+F ++L DVGV + GN L A
Sbjct: 46 IEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEA 79
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 43 STPVCSM--LLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEI 100
S P ++ +++ V++ ++L D VQ A + NI S E + ++ +E+
Sbjct: 31 SGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 90
Query: 101 LMALTLLEGEEVRKLALQALA 121
L+ L EV+K A +ALA
Sbjct: 91 LVKLLTSTDSEVQKEAARALA 111
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 50 LLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEG 109
+++ V++ ++L D VQ A + NI S E + ++ +E+L+ L
Sbjct: 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141
Query: 110 EEVRKLALQALA 121
EV+K A +ALA
Sbjct: 142 SEVQKEAARALA 153
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 50 LLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEG 109
+++ V++ ++L D VQ A + NI S E + ++ +E+L+ L
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 110 EEVRKLALQALA 121
EV+K A +ALA
Sbjct: 184 SEVQKEAARALA 195
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
Q+L+ P+ + AL + NI S G E + V L L E+++K A +AL
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Query: 121 AK 122
K
Sbjct: 205 EK 206
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 25.8 bits (55), Expect = 8.3, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 81 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 136
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 25.8 bits (55), Expect = 8.6, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 81 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 136
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 80 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 135
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 80 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 135
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 82 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 137
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 49 MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMAL 104
++++ + V +F Q+L V V+ +A+ +GN+ + + VL ME ++ L
Sbjct: 82 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,326,402
Number of Sequences: 62578
Number of extensions: 60770
Number of successful extensions: 196
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 40
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)