RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4702
(138 letters)
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 93.8 bits (232), Expect = 2e-23
Identities = 55/132 (41%), Positives = 82/132 (62%), Gaps = 4/132 (3%)
Query: 11 CSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVG 69
+V+FL LL +ED ETA A AGALA++TSVS C +L +W+DI ++A+P
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723
Query: 70 VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEG---EEVRKLALQALAKGEEY 126
VQHR +VI+ N+++AG+E+A+++ T++ME+L L L + R++A Q LA E Y
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783
Query: 127 GIIRRPGEGEEE 138
II R E
Sbjct: 784 RIIERSDNAEIP 795
Score = 51.0 bits (121), Expect = 1e-08
Identities = 20/106 (18%), Positives = 40/106 (37%)
Query: 16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
L LL + + AL L S++ V ++++ V + L + + A
Sbjct: 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644
Query: 76 VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ N++ + + + + ++ L L E EE ALA
Sbjct: 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 74.8 bits (183), Expect = 7e-17
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHP--DVGV 70
L L D E+ A A A + + + LL K ++ Q+ A D+ +
Sbjct: 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL 715
Query: 71 QHRALVIVGNILSAGKELAERVLSTELMEILM----ALTLLEGEEVRKLALQAL 120
+ R L++ + + + L E L+ + A+
Sbjct: 716 RQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAI 769
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 50.8 bits (121), Expect = 2e-08
Identities = 21/105 (20%), Positives = 45/105 (42%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
L L D E + A++ LT M+++K V ++L ++ + AL
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 77 IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+GNI++ E ++V+ + + +L ++K A ++
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Score = 50.0 bits (119), Expect = 3e-08
Identities = 19/107 (17%), Positives = 42/107 (39%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+F+ L + + +A AL + S ++ +++ + F +LA P + +A
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ +GNI G + V+ ++ L+AL +
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Score = 34.2 bits (78), Expect = 0.009
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDV-----GVQ 71
L + A AL + + ++++ +D +LA PD+ G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207
Query: 72 HRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ N+ +++ L+ L EV + A++
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 50.3 bits (120), Expect = 2e-08
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
RF+ L +E+ +A L + S ++ ++++ V IF ++L+ VQ +A
Sbjct: 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKL-----ALQALAKGEE 125
+ +GNI + VL ++ L+ L + + AL L +G+
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQL-FSKQNRLTMTRNAVWALSNLCRGKS 182
Score = 47.6 bits (113), Expect = 2e-07
Identities = 24/108 (22%), Positives = 45/108 (41%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L L DT+ A AL+ L+ +++ ++L H D V
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
AL VGNI++ + +L+ ++ L+ L E ++K A ++
Sbjct: 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/108 (16%), Positives = 40/108 (37%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
R L L D + A A+ + + ++L + + +L+ P ++
Sbjct: 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKE 295
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
A + NI + + + V+ + L+++ RK A A+
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343
Score = 38.3 bits (89), Expect = 3e-04
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTP-VCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
L + + T AA A+ TS + L+E + +L D + AL
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382
Query: 76 VIVGNILSAGKE-----------LAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ NIL G++ + ++ + L E +E+ + A +
Sbjct: 383 NGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 48.4 bits (116), Expect = 7e-08
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L L + + A AL+ + S +++ + Q+L+ P+ +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
AL + NI S G E + V +E L L E E+++K A +AL K
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248
Score = 40.7 bits (96), Expect = 4e-05
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
+D + +A + + S +++ + Q+L+ P+ + AL + NI S
Sbjct: 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 84 AGKELAERVLSTELMEILMALTLLEGEEVRK---LALQALAKGEEY 126
G E + V+ + L+ L E++ + AL +A G
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Score = 40.4 bits (95), Expect = 6e-05
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+ LL+ + + A AL+ + S +++ + Q+L+ P+ + A
Sbjct: 58 ALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
L + NI S G E + V+ + L+ L E++ + AL AL+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Score = 37.3 bits (87), Expect = 7e-04
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIV 78
LL+ + + A AL+ + S + E ++ +Q+ +H + +Q A +
Sbjct: 188 LLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Query: 79 GNI 81
+
Sbjct: 247 EKL 249
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 48.1 bits (114), Expect = 1e-07
Identities = 18/104 (17%), Positives = 38/104 (36%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
L LL + A A++ L L + + + + ++ ++
Sbjct: 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAF 189
Query: 77 IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
++ N+L E + S +++ L+AL E + L AL
Sbjct: 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 233
Score = 39.2 bits (91), Expect = 1e-04
Identities = 9/84 (10%), Positives = 21/84 (25%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
L ++ + +A L L L V ++
Sbjct: 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEH 228
Query: 74 ALVIVGNILSAGKELAERVLSTEL 97
L + ++++ + EL
Sbjct: 229 VLGALCSLVTDFPQGVRECREPEL 252
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 46.9 bits (111), Expect = 3e-07
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
R + + + AA AL + S ++ ++++ + V +F Q+L V V+ +A
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ +GN+ + + VL ME ++ L + + A L+
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240
Score = 45.4 bits (107), Expect = 1e-06
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L L DTET A A++ L+ +++ ++L+H VQ
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
AL VGNI++ + V++ ++ L L E ++K A ++
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366
Score = 38.5 bits (89), Expect = 3e-04
Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 12 SQVRFLFLLTCEEDTETACAAAGALA-MLTSVSTPVCSMLLEKNWVDIFKQILAHPD-VG 69
++ + +D + +A +L+ P ++++ V + +
Sbjct: 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146
Query: 70 VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+Q A + NI S + V+ + + + + L EV++ A+ AL
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Score = 36.5 bits (84), Expect = 0.001
Identities = 18/109 (16%), Positives = 34/109 (31%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
V L E A AL + ST +L+ N ++ + +
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
A + N+ K + + ++ + L L E A A++
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 283
Score = 36.5 bits (84), Expect = 0.001
Identities = 16/105 (15%), Positives = 34/105 (32%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
+ L A L+ L P + + +++ D A
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279
Query: 77 IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ + +E + V+ + + L+ L E V+ AL+A+
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 43.0 bits (102), Expect = 5e-06
Identities = 27/106 (25%), Positives = 46/106 (43%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
L L + + A AL+ + S +++ + Q+L+ P+ + AL
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160
Query: 77 IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ NI S G E + V +E L L E E+++K A +AL K
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206
Score = 37.2 bits (87), Expect = 6e-04
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVG 79
D + +A L+ + S +++ + Q+L+ P+ + AL +
Sbjct: 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 80 NILSAGKELAERVLSTELMEILMALTLLEGEEVRK---LALQALAKGEE 125
NI S G E + V+ + L+ L E++ + AL +A G
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Score = 35.7 bits (83), Expect = 0.002
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+ LL+ + + A AL+ + S +++ + Q+L+ P+ + A
Sbjct: 58 ALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
L + NI S G E + V+ + L+ L E++ + AL AL+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 25 DTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
+ + A AL+ + S + E ++ +Q+ +H + +Q A + + S
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 26.8 bits (60), Expect = 2.1
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
Q L PD AL + I S G E + V+ + L+ L E++ + AL AL
Sbjct: 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 43.5 bits (102), Expect = 6e-06
Identities = 11/99 (11%), Positives = 26/99 (26%)
Query: 23 EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL 82
+ + + L +L + ++L I+ V +L
Sbjct: 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346
Query: 83 SAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
S ++ M+ L + + + L L
Sbjct: 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385
Score = 42.7 bits (100), Expect = 1e-05
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 1/119 (0%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L AAG L L + + ++L + GV
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATY 653
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRP 132
A ++ + + ++ LS EL L + E L L A+GE G +
Sbjct: 654 AAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDD 712
Score = 37.3 bits (86), Expect = 8e-04
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 1/107 (0%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+ + D ETA +G L L S + + + +L P V A
Sbjct: 196 AIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA 254
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ + N+L + V ++ ++AL + + L
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301
Score = 36.9 bits (85), Expect = 0.001
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIV 78
++ + + L +L SV + ++E + L P + L +
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
Query: 79 GNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
N+ A ++ L+ L+ L + V A L+
Sbjct: 385 RNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424
Score = 34.6 bits (79), Expect = 0.006
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 19 LLTCEEDTETACAAAGALAMLTSVST---PVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
+L + + A AL LTS + + + + ++L P +A
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509
Query: 76 VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
V + L+ + + L+ L + ++ ++
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555
Score = 33.1 bits (75), Expect = 0.025
Identities = 15/102 (14%), Positives = 34/102 (33%)
Query: 20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVG 79
L +ED AA + L+ +++ V + + + + R
Sbjct: 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217
Query: 80 NILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ LS +E + + + L+ + + V A+ L
Sbjct: 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259
Score = 31.9 bits (72), Expect = 0.051
Identities = 10/100 (10%), Positives = 27/100 (27%), Gaps = 3/100 (3%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
A L L + + +L +V + +
Sbjct: 246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305
Query: 84 AGKELAERVLSTELMEILMALTLLEG--EEVRKLALQALA 121
+E +L++ + L+ + + E++ + L
Sbjct: 306 GNQESKLIILASGGPQALVNI-MRTYTYEKLLWTTSRVLK 344
Score = 30.0 bits (67), Expect = 0.26
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 6/102 (5%)
Query: 29 ACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKEL 88
A + + ++ L + ++L D V ++A V+V +
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 184
Query: 89 AERVLSTELMEILMALTLLEGEEVRKL-----ALQALAKGEE 125
+ S +++ ++ + +V L L+ E
Sbjct: 185 HAIMRSPQMVSAIVRT-MQNTNDVETARCTSGTLHNLSHHRE 225
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 42.2 bits (99), Expect = 2e-05
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 1/106 (0%)
Query: 16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
+ LL + + + L +L + ++L I+
Sbjct: 145 MVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203
Query: 76 VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
V +LS ++ M+ L + + + L L
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249
Score = 40.7 bits (95), Expect = 5e-05
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
++ L L + L L+ +T + + Q+L D+ V
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTC 282
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEG--EEVRKLALQALA 121
A I+ N+ + V +E L+ L G E++ + A+ AL
Sbjct: 283 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332
Score = 37.6 bits (87), Expect = 6e-04
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 1/119 (0%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L AAG L L + + + ++L + GV
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRP 132
A ++ + + ++ LS EL L + E L L A+GE G +
Sbjct: 518 AAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576
Score = 37.2 bits (86), Expect = 7e-04
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 1/106 (0%)
Query: 16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
+ + D ETA AG L L S + + + ++L P V A+
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
Query: 76 VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ N+L + V ++ ++AL + + L
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165
Score = 30.7 bits (69), Expect = 0.13
Identities = 10/100 (10%), Positives = 27/100 (27%), Gaps = 3/100 (3%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
A L L + + +L +V + +
Sbjct: 110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169
Query: 84 AGKELAERVLSTELMEILMALTLLEG--EEVRKLALQALA 121
+E +L++ + L+ + + E++ + L
Sbjct: 170 GNQESKLIILASGGPQALVNI-MRTYTYEKLLWTTSRVLK 208
Score = 28.7 bits (64), Expect = 0.71
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 56 VDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE-EVRK 114
+ ++L D V ++A V+V + + S +++ ++ + E +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 115 LALQALA 121
L
Sbjct: 76 CTAGTLH 82
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 40.1 bits (94), Expect = 8e-05
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 1/106 (0%)
Query: 16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
+ LL + + + L +L + ++L I+
Sbjct: 148 MVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206
Query: 76 VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
V +LS ++ M+ L + + + L L
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Score = 37.8 bits (88), Expect = 5e-04
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 1/108 (0%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+ + D ETA AG L L S + + + ++L P V A
Sbjct: 63 AIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ + N+L + V ++ ++AL + + L
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169
Score = 36.7 bits (85), Expect = 0.001
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
++ L L + L L+ +T + + Q+L D+ V
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTC 285
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEG--EEVRKLALQALA 121
A I+ N+ + V +E L+ L G E++ + A+ AL
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Score = 31.3 bits (71), Expect = 0.085
Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 3/122 (2%)
Query: 19 LLTCEEDTETACAAAGALAMLTS---VSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
+L + + A AL LTS + + + + + ++L P +A
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
Query: 76 VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRPGEG 135
V + L+ + + L+ L + ++ ++ + + +R
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 136 EE 137
E
Sbjct: 437 EG 438
Score = 30.5 bits (69), Expect = 0.17
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L AAG L L + + ++L + GV
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 74 ALVIVGNI 81
A ++ +
Sbjct: 521 AAAVLFRM 528
Score = 29.4 bits (66), Expect = 0.37
Identities = 10/100 (10%), Positives = 27/100 (27%), Gaps = 3/100 (3%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
A L L + + +L +V + +
Sbjct: 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172
Query: 84 AGKELAERVLSTELMEILMALTLLEG--EEVRKLALQALA 121
+E +L++ + L+ + + E++ + L
Sbjct: 173 GNQESKLIILASGGPQALVNI-MRTYTYEKLLWTTSRVLK 211
Score = 29.4 bits (66), Expect = 0.39
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHP-DVGVQHRALVIVGNIL 82
ED AA + L+ +++ V + + + DV + N L
Sbjct: 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN-L 87
Query: 83 SAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
S +E + + + L+ + + V A+ L
Sbjct: 88 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 35.0 bits (80), Expect = 0.005
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
+E E L + V L ++ + ++ V+ +
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIE 424
Query: 77 IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ + +L +L + MA + +R+ A L K
Sbjct: 425 YMPLLA---GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.008
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 50 LLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAER---VLSTELMEIL-MALT 105
LL K ++D Q L + R L I+ + G + V +L I+ +L
Sbjct: 306 LLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 106 LLEGEEVRKLALQALA 121
+LE E RK+ L+
Sbjct: 365 VLEPAEYRKM-FDRLS 379
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 33.4 bits (75), Expect = 0.015
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 17 LFLLTCEEDTETACAAAGALAMLTS----VSTPVCSMLLEKNWVDIFKQILAHPDVGVQH 72
+ LL + A+AGA+ L + + S L ++ + +L + V
Sbjct: 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVK 373
Query: 73 RALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
A + N L+ E + + ++ L + + +
Sbjct: 374 AASGALRN-LAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421
Score = 31.1 bits (69), Expect = 0.12
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
AA L L + V + + + + + +L HP V A + N +S
Sbjct: 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKN-IS 118
Query: 84 AGKELAERVLSTELMEILMALTLL---EGEEVRKLALQAL 120
G++ ++ + + LL ++ ++ L
Sbjct: 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158
Score = 28.8 bits (63), Expect = 0.63
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
+L V+ A + ++ ++ V + + +L+ L +EV A AL
Sbjct: 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGAL 114
Query: 121 A 121
Sbjct: 115 K 115
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 33.0 bits (75), Expect = 0.023
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTS---VSTPVCSMLLEKNWVDIFKQILAHPDVGV 70
V L + + G L ++S + +L E N + Q L + +
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395
Query: 71 QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
A + N+ + + E + + +L L + + + + AL
Sbjct: 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446
Score = 28.0 bits (62), Expect = 1.0
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
A G L L++ + L + V + K ++ + + + N L
Sbjct: 391 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN-LM 449
Query: 84 AGKELAER 91
A + +
Sbjct: 450 ANRPAKYK 457
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 32.5 bits (74), Expect = 0.027
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPV---CSMLLEKNWVDIFKQILAHPDVGV 70
V L + + G L ++S+ +L E N + Q L + +
Sbjct: 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279
Query: 71 QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
A + N+ + + E + + +L L + + + + AL
Sbjct: 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330
Score = 27.1 bits (60), Expect = 2.3
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
A G L L++ + L + V + K ++ + + + N L
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN-LM 333
Query: 84 AGKELAER 91
A + +
Sbjct: 334 ANRPAKYK 341
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 32.5 bits (73), Expect = 0.034
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 2/108 (1%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+ + L+ + D + A + + + + +L P+ VQ A
Sbjct: 6 KAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64
Query: 75 LVIVGNILSAGKEL-AERVLSTELMEILMALTLLEGEEVRKLALQALA 121
+ N++ E + E + L E++K L
Sbjct: 65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 31.7 bits (71), Expect = 0.053
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 50 LLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEG 109
L +K + + ++ D + RA V +G IL ++ +++ + E
Sbjct: 29 LEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN 88
Query: 110 EEVRKLALQALA 121
E+V AL+AL
Sbjct: 89 EKVTIKALRALG 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 30.3 bits (68), Expect = 0.13
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 1/104 (0%)
Query: 18 FLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVI 77
L AAA + + + + + Q+L + VQ
Sbjct: 16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGA 75
Query: 78 VGNILSAGKELAERVLSTELMEILMA-LTLLEGEEVRKLALQAL 120
+ N++ + V + L+ L E +K L
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 29.3 bits (64), Expect = 0.43
Identities = 15/117 (12%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 5 YLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILA 64
L+ F+ S + L AL L +++ + ++
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC---GNIVFVDLIEHLLSELSK 224
Query: 65 HPDVGVQHRALVIVGNIL-SAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
+ + + + I AG + E + +++ +++ ++ +E+R+ +QA
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAF 279
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 29.2 bits (65), Expect = 0.43
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 22 CEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNI 81
L + + + + + V + +
Sbjct: 325 RNLKYINISGTEIRENFLKQGRKLPEWFTRPEVAEILAETYVPKH----KQGFCVWLTGL 380
Query: 82 LSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGI--IRRPGE 134
AGK +L+T L +TLL+G+ VR + L +E I I R G
Sbjct: 381 PCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGF 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.67
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 18/84 (21%)
Query: 7 ILFYCSQVRFLFLLTCEEDTETACA----------AAGALAMLTSVSTPVC----SMLLE 52
F SQ++ F E TE A L ++S+ P +L
Sbjct: 26 SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 53 KNWVDIFKQILAHPDVGVQHRALV 76
+ L D+ H AL
Sbjct: 86 LCLTEFENCYLEGNDI---H-ALA 105
Score = 28.5 bits (63), Expect = 0.75
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 36/115 (31%)
Query: 35 ALAMLTSVSTPVCSMLLEKNWVDIFKQILA-HPDVGVQHRALVIVGNILSAGKELAERVL 93
AL L + L+ + A H +G ++ AL + +++S +
Sbjct: 1735 AL-TLMEKA---AFEDLKSKGLIPADATFAGHS-LG-EYAALASLADVMS----IES--- 1781
Query: 94 STELMEILMALTLLEGEEVR-KLALQALAKGEE----YGIIR-RPGE----GEEE 138
+ ++ R A+ + E YG+I PG +E
Sbjct: 1782 ---------LVEVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Score = 28.1 bits (62), Expect = 0.99
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 32/94 (34%)
Query: 42 VSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEIL 101
V++P S LL I ++ N+ K++ V T
Sbjct: 423 VASPFHSHLLV----PASDLINKD----------LVKNNVSFNAKDIQIPVYDTF----- 463
Query: 102 MALTLLEGEEVRKLA---LQALAKGEEYGIIRRP 132
+G ++R L+ + + IIR P
Sbjct: 464 ------DGSDLRVLSGSISERIVD----CIIRLP 487
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma
apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Length = 1056
Score = 28.1 bits (61), Expect = 1.1
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 27 ETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK 86
+TA G+L +T C L + D+ Q AL +GN G+
Sbjct: 413 KTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA---GQ 469
Query: 87 ELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ + + L +L V+ A+ AL
Sbjct: 470 PNSIKKIQRFLPGQGKSLDEYS-TRVQAEAIMALRN 504
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 27.7 bits (62), Expect = 1.2
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
ED AAA AL + V+ + L D V+ A +G I
Sbjct: 124 EDWFVRIAAAFALGEIGDER-----------AVEPLIKALKDEDGWVRQSAADALGEIGG 172
Query: 84 AGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ + L RK+A+ L
Sbjct: 173 E-----------RVRAAMEKLAETGTGFARKVAVNYLET 200
Score = 26.6 bits (59), Expect = 2.4
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
ED +AA AL + + V+ + L D V+ A +G I
Sbjct: 93 EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI-- 139
Query: 84 AGKELAERVLSTELMEILMALTLLEGEE--VRKLALQALAK 122
G E A L + L+ E+ VR+ A AL +
Sbjct: 140 -GDERAVEPL----------IKALKDEDGWVRQSAADALGE 169
Score = 26.2 bits (58), Expect = 4.0
Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 22/99 (22%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
ED AAA AL + V+ + L D V+ A V +G I
Sbjct: 62 EDAWVRRAAADALGQIGDERA-----------VEPLIKALKDEDGWVRQSAAVALGQIGD 110
Query: 84 AGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+E L+ E VR A AL +
Sbjct: 111 E-----------RAVEPLIKALKDEDWFVRIAAAFALGE 138
Score = 25.4 bits (56), Expect = 7.6
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 22/99 (22%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
+ AAA AL + V+ + L D V+ A +G I
Sbjct: 31 DSYYVRRAAAYALGKIGDERA-----------VEPLIKALKDEDAWVRRAAADALGQIGD 79
Query: 84 AGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+E L+ E VR+ A AL +
Sbjct: 80 E-----------RAVEPLIKALKDEDGWVRQSAAVALGQ 107
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 27.5 bits (61), Expect = 1.3
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 18/100 (18%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
++ ++A L + V + + + + + I+G I
Sbjct: 35 HNSLKRISSARVLQLRGGQDA-----------VRLAIEFCSDKNYIRRDIGAFILGQIKI 83
Query: 84 AGKELAERVLSTELMEILMALTLLEGE-EVRKLALQALAK 122
K IL + L + VR A+++ A+
Sbjct: 84 CKKCEDNVF------NILNNMALNDKSACVRATAIESTAQ 117
Score = 26.7 bits (59), Expect = 3.0
Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 22/109 (20%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L L + + + AA A+ + ++ + D F ++L + V+
Sbjct: 161 IPLLINLLKDPNGDVRNWAAFAININKYDNSDI---------RDCFVEMLQDKNEEVRIE 211
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
A++ + + VL L+ V ++A +
Sbjct: 212 AIIGLSYR---KDKRVLSVL----------CDELKKNTVYDDIIEAAGE 247
Score = 25.9 bits (57), Expect = 4.8
Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 14/101 (13%)
Query: 24 EDTETACAAAGALAML--TSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNI 81
++ A L + +L L V+ A+
Sbjct: 66 KNYIRRDIGAFILGQIKICKKCEDNVFNILNN-------MALNDKSACVRATAIESTAQR 118
Query: 82 LSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ +++ E + VR+ A++
Sbjct: 119 CKKNPIYSPKIV-----EQSQITAFDKSTNVRRATAFAISV 154
Score = 25.1 bits (55), Expect = 9.2
Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 16/102 (15%)
Query: 23 EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL 82
++ A + A + + V+ + V+ + I
Sbjct: 102 DKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156
Query: 83 SAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGE 124
+ +L+ L +VR A A+ +
Sbjct: 157 DK-----------ATIPLLINLLKDPNGDVRNWAAFAININK 187
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 27.3 bits (61), Expect = 1.7
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
ED AAA AL + V+ + L D V+ A +G I
Sbjct: 119 EDWFVRIAAAFALGEIGDER-----------AVEPLIKALKDEDGWVRQSAADALGEIGG 167
Query: 84 AGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
+ + L RK+A+ L
Sbjct: 168 E-----------RVRAAMEKLAETGTGFARKVAVNYLET 195
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 27.0 bits (59), Expect = 2.2
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ LF D +T + AL + + P+ + V F +L+ + +
Sbjct: 109 IPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASI----VRDFMSMLSSKNREDKLT 163
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
AL + + + + ++ L E VR A++AL
Sbjct: 164 ALNFIEAMGENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVH 207
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural
genomics consortium, SGC, WD repeat, acetylation,
ATP-binding; 1.90A {Homo sapiens}
Length = 304
Score = 26.6 bits (58), Expect = 2.7
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 67 DVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEE 111
D+ R LV +G ++S + S + + + +
Sbjct: 247 DLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPA 291
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.8
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 10/24 (41%)
Query: 108 EGEEVRKL--ALQ--------ALA 121
E + ++KL +L+ ALA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 25.8 bits (56), Expect = 5.7
Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 31 AAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKEL-- 88
A AL + P+ S ++ + + + H ++ + + K+
Sbjct: 123 AIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182
Query: 89 -AERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRPGEGE 136
+R L E++ I++ + +R + ++ A +I+ G
Sbjct: 183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI-----LIKIFGMNT 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 25.2 bits (56), Expect = 8.6
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 78 VGNILSAGKELAERVLSTELMEIL--MALTLLEGEEVRKLALQALAKGEEYGIIRRPGEG 135
V I++ E A+ ++ + + L + LLE E + L+ + E ++
Sbjct: 412 VKKIVTNCYERAKEII-RKYRKQLDNIVEILLEKETIEGDELRRILSEEFEKVVEAAALE 470
Query: 136 EEE 138
Sbjct: 471 HHH 473
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 24.6 bits (54), Expect = 8.9
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 34/120 (28%)
Query: 24 EDTETACAAAGALAMLTSVST-PVCSMLLEKNW------------------VDIFKQILA 64
E+ + AL+ + + P+ L ++W V+ ++L
Sbjct: 24 ENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLE 83
Query: 65 HPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEE--VRKLALQALAK 122
V+ A + I G E + L E RK+A+ L
Sbjct: 84 DDSGFVRSGAARSLEQI---GGERVRAAM----------EKLAETGTGFARKVAVNYLET 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.385
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,144,795
Number of extensions: 125007
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 114
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)