RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4702
(138 letters)
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 40.6 bits (93), Expect = 2e-05
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIV 78
+ E GAL +L ++ N + +F Q+L P +Q A ++
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHN-RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484
Query: 79 GNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
L+ KE AE + + L L E V A L +
Sbjct: 485 CE-LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527
Score = 29.5 bits (64), Expect = 0.13
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L AAG L L + + + ++L + GV
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 74 ALVIVGNI 81
A ++ +
Sbjct: 521 AAAVLFRM 528
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 38.3 bits (87), Expect = 1e-04
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Query: 23 EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL 82
+D + A + + + + +L P+ VQ A + N++
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72
Query: 83 SAGKELAERVLSTELMEILMALTL-LEGEEVRKLALQALA 121
+ ++L E++K L
Sbjct: 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112
Score = 29.4 bits (64), Expect = 0.16
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
Q L+ D Q + + + ++V + L+ L + V++ A AL
Sbjct: 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGAL 68
Query: 121 A 121
Sbjct: 69 R 69
Score = 25.2 bits (53), Expect = 3.4
Identities = 20/107 (18%), Positives = 36/107 (33%)
Query: 14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
+ L L + AAAGAL L ST +N + +L +
Sbjct: 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK 105
Query: 74 ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
L + LS+ EL E +++ L + + + + +
Sbjct: 106 QLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSR 152
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 35.5 bits (80), Expect = 0.001
Identities = 19/90 (21%), Positives = 41/90 (45%)
Query: 15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
+F+ L + + +A AL + S ++ +++ + F +LA P + +A
Sbjct: 60 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 119
Query: 75 LVIVGNILSAGKELAERVLSTELMEILMAL 104
+ +GNI G + V+ ++ L+AL
Sbjct: 120 VWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149
Score = 25.1 bits (53), Expect = 3.4
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKE-LAERVLSTELMEILMA-LTLLEGEEVRKLALQ 118
+ + ++ Q +A +LS K+ + ++ L+ ++ L + ++ +
Sbjct: 20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAW 79
Query: 119 ALA 121
AL
Sbjct: 80 ALT 82
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 31.6 bits (70), Expect = 0.023
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 20/116 (17%)
Query: 24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
+ + A+ S LL KN + F + L PD+ V+ ALV +
Sbjct: 974 GSSYARSSVVTAVKFTISDHPQPIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAH 1032
Query: 84 AGKELAERVLSTELMEILMALTLL------------------EGEEVRKLALQALA 121
L +L ++ L T + +G ++RK A + +
Sbjct: 1033 NKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMY 1087
Score = 31.3 bits (69), Expect = 0.035
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 28 TACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKE 87
T + ++++ VC + + + I DV VQ AL I+ ++LS
Sbjct: 109 TVIGELPPASSGSALAANVCKKITGR----LTSAIAKQEDVSVQLEALDIMADMLSRQGG 164
Query: 88 LAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
L ++ L+ VRK + AL
Sbjct: 165 LLVNFHP-SILTCLLPQLTSPRLAVRKRTIIALG 197
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 30.1 bits (66), Expect = 0.072
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 35 ALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLS 94
L + +S + K+ + ++ P V+ + I G L L
Sbjct: 500 TLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI---GPILDNSTLQ 556
Query: 95 TELMEILMALTLLEGEEVRKLALQALA 121
+E+ IL LT + +V+ A +AL
Sbjct: 557 SEVKPILEKLTQDQDVDVKYFAQEALT 583
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 27.8 bits (60), Expect = 0.40
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 4/122 (3%)
Query: 5 YLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIF----K 60
+ + + T + E V + + E + V K
Sbjct: 312 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIK 371
Query: 61 QILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
+ + +PD + A++ G IL + + L + M L+ L VR A +
Sbjct: 372 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431
Query: 121 AK 122
+
Sbjct: 432 GR 433
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 27.0 bits (59), Expect = 0.84
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 57 DIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLA 116
I + + D + A + I+ E + EL+E + E +V+
Sbjct: 424 SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD--ELLESFLEGFHDESTQVQLTL 481
Query: 117 LQALAKGEEYGIIRRPGEGEE 137
L A+ K +++P E +E
Sbjct: 482 LTAIVK----LFLKKPSETQE 498
>d2gr8a1 d.24.1.4 (A:1022-1098) Adhesin Hia {Haemophilus
influenzae [TaxId: 727]}
Length = 77
Score = 23.5 bits (51), Expect = 4.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 31 AAAGALAMLTSVSTPVCSML 50
A+A A + L + P SM+
Sbjct: 8 ASALAASQLPQATMPGKSMV 27
>d2q3na1 d.165.1.1 (A:2-248) Agglutinin-1 chain A {Abrus precatorius
[TaxId: 3816]}
Length = 247
Score = 24.1 bits (52), Expect = 6.1
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 44 TPVCSML-LEKNWVDIFKQIL 63
P SML LE W + + +
Sbjct: 184 QPDPSMLSLENTWEPLSRAVQ 204
>d1rl0a_ d.165.1.1 (A:) Dianthin 30 {Clove pink (Dianthus
caryophyllus) [TaxId: 3570]}
Length = 255
Score = 24.1 bits (52), Expect = 7.0
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 44 TPVCSML-LEKNWVDIFKQILAHPDVGV 70
++ + +W I I GV
Sbjct: 197 DSENKVIQFQVSWSKISTAIFGDCKNGV 224
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 101
Score = 23.1 bits (50), Expect = 8.6
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 84 AGKELAERVLST----------ELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRPG 133
A EL E++ + +E + + L + EE ++ + + + EE G I
Sbjct: 34 ASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEIVIAR 93
Query: 134 EGEEE 138
G EE
Sbjct: 94 GGGEE 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.385
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,759
Number of extensions: 20922
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 21
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)