BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4703
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 82/95 (86%)
Query: 210 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 269
++ +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+ KLAEACRRF
Sbjct: 326 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF 385
Query: 270 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDK 304
L+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK 420
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 135 NEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKC 194
N + KV M FD + P+DKR A NNLVVLA+E +GAE+L K ++ +L K
Sbjct: 1 NAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV 60
Query: 195 ETNEEIYLGEEDFITSIIKQGVD 217
E +++IY+ + ++ + V+
Sbjct: 61 EKDQDIYVNMVHLVAALCENSVE 83
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
+L++ GN FK GDY AL YT+AL + A ++A +NRAA +LK DK +
Sbjct: 30 QLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121
SK++E D KAL+RR QA E +G+ ++A D + +EP NK Q L
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
K GN+ +KQGDY+ A+++Y KAL++ A+ N Y KQ K IE
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPN----NASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
K+LE+ P++ KA +RR AY G +++A D + ++P N
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A R Y KQ K IED K+LE
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPN----NAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 76 IVPDDPKA 83
+ P++ KA
Sbjct: 106 LDPNNAKA 113
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVT-----AEESHERA-------TCLKNRAAVYLK 59
LK GN+ FK ++E A+ YTK L+ A E + A +C+ N A LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
+ ++ C ++LEI P + KAL+RR Q ++ + ++++A D K + P +KAIQ
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 120 VLSRL 124
L ++
Sbjct: 346 ELLKV 350
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESH------ERATCLK-----NRAAVYLKQ 60
+KE G FK+G Y+ AL Y K + ES ++A L+ N A +LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
IE C+K+LE+ ++ K LFRR +A+ A+ FE A D + + ++ P NKA +
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 121 LSRLFAIVTKRMQENEQLQNKVH-NMFK 147
L A+ +R++ + K++ NMF+
Sbjct: 270 L----AVCQQRIRRQLAREKKLYANMFE 293
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ P++ +A + AY G ++EA
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELYPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 76 IVPDDPKA 83
+ P++ +A
Sbjct: 106 LYPNNAEA 113
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
A N Y KQ D+ IE K+LE+ P++ +A + AY G ++EA
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114
+ P++ +A + AY G ++EA + ++P N
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 76 IVPDDPKA 83
+ P++ +A
Sbjct: 106 LDPNNAEA 113
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106
A N Y KQ D+ IE K+LE+ P++ +A + AY G ++EA +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 107 IHRVEPTN 114
++P N
Sbjct: 69 ALELDPNN 76
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
LK+ GN F+ Y+ A+ +Y AL E E N +A Y+ KV+E +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWAL-----ELKEDPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSR 123
K+LE+ PD K L RR A E +GKF +A D + N A I+P+L R
Sbjct: 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
+LK GN F ++ A+ +Y A+++ E N +A Y+ +KVIE
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFT 82
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSR 123
+K+LEI PD KAL RR A E++G F +A D + + +I+P+L R
Sbjct: 83 TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
+LK GN F ++ A+ +Y A+++ E N +A Y+ +KVIE
Sbjct: 23 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFT 78
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSR 123
+K+LEI PD KAL RR A E++G F +A D + + +I+P+L R
Sbjct: 79 TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 132
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 16/148 (10%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESH------ERATCLK-----NRAAVYLKQ 60
+KE G FK+G Y+ AL Y K + ES ++A L+ N A +LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 61 NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120
IE C+K+LE+ ++ K L RR +A+ A+ FE A D + + ++ P NKA +
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 121 LSRLFAIVTKRMQENEQLQNKVH-NMFK 147
L A+ +R++ + K++ NMF+
Sbjct: 270 L----AVCQQRIRRQLAREKKLYANMFE 293
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
M N+LKE GN A G+ + AL Y++A+K+ NR+A Y K+ K
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQK 56
Query: 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125
ED K++++ PD K R+ A E + +FEEA + + E N ++ L +
Sbjct: 57 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
Query: 126 A 126
A
Sbjct: 117 A 117
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ P +A + AY G ++EA
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEA 88
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
+ P +A + AY G ++EA
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEA 122
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Query: 76 IVP 78
+ P
Sbjct: 132 LDP 134
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
A N Y KQ D+ IE K+LE+ P +A + AY G ++EA
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 54
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 12 LKESGNSAFKQGDYETALDFYTKAL------------KVTAEESHERATCLKNRAAVYLK 59
+KE G FK G Y A+ Y K + + A ES A L N A YLK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL-NLAMCYLK 329
Query: 60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
+ K +E C K+L + + K L+RR +A + +FE A D + + V P NKA +
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR- 388
Query: 120 VLSRLFAIVTKRMQENEQLQNKVHNMFK 147
++F K + NE+ + NMFK
Sbjct: 389 --LQIFMCQKKAKEHNERDRRTYANMFK 414
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
+LK N FK DYE A+ FY++A+++ A NR+ YL+ + D
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDA 63
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
++++E+ K +RR + A+GKF A D + + +V+P +K
Sbjct: 64 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 12 LKESGNSAFKQGDYETALDFYTKAL------------KVTAEESHERATCLKNRAAVYLK 59
+KE G FK G Y A+ Y K + + A ES A L N A YLK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL-NLAMCYLK 329
Query: 60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119
+ K +E C K+L + + K L+RR +A + +FE A D + + V P NKA +
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 120 VLSRLFAIVTKRMQENEQLQNKVH-NMFK 147
+S + K+ +E+ + +++ NMFK
Sbjct: 390 QIS----MCQKKAKEHNERDRRIYANMFK 414
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
LK N FK DYE A+ FY++A+++ A NR+ YL+ + D +
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALNDAT 79
Query: 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
+++E+ K +RR + A+GKF A D + + +V+P +K
Sbjct: 80 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 123
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
D + +LK N FK DYE A+ FY++A+++ A NR+ YL+
Sbjct: 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTEC 62
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
+ D ++++E+ K +RR + A+GKF A D + + +V+P +K
Sbjct: 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
K KE GN A+K+ D++TAL Y KA ++ T + N+AAVY ++ +K E C
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
K++E+ ++ + + +AY IG EE Y DA H +
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
K KE GN A+K+ D++TAL Y KA ++ T + N+AAVY ++ +K E C
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
K++E+ ++ + + +AY IG EE Y DA H +
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 5 NMNDYNKLKES----GNSAFKQGDYETALDFYTKAL 36
N DY ++ ++ GNS FK+ Y+ A+ FY K+L
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 76 IVPDDPKA 83
+ P++ +A
Sbjct: 72 LDPNNAEA 79
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106
A N Y KQ D+ IE K+LE+ P++ +A + AY G ++EA +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 107 IHRVEPTN 114
++P N
Sbjct: 69 ALELDPNN 76
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCS 71
+K GN F++GDY A+ YT+A+K ++ A NRAA Y K + ++DC
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCE 74
Query: 72 KSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
+ +++ P K R+ A EA+ + +A
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKA 103
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESH-------------ERAT 48
++ + ++ K GNS FK+ E A+ Y A+ ++ +
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231
Query: 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
C N AA +K + D+ I C+ L +PKALFRR +A +G+ + A D +
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291
Query: 109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150
+ P +KAI+ L L ++ + L K M+K +F
Sbjct: 292 KYAPDDKAIRRELRAL-------AEQEKALYQKQKEMYKGIF 326
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
GN+ +KQGDY+ A+++Y KAL++ A N Y KQ D+ IE K+LE
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 76 IVP 78
+ P
Sbjct: 66 LDP 68
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100
A N Y KQ D+ IE K+LE+ P +A + AY G ++EA
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 56
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
K KE GN A+K+ D++TAL Y KA ++ T + N+AAVY ++ +K E C
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYIVNQAAVYFEKGDYNKCRELC 61
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKF---EEAYTDAKHIH 108
K++E+ ++ + AY IG EE Y DA H +
Sbjct: 62 EKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFY 102
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From
Aspergillus Fumigatus
Length = 164
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+KLK GN+A + +Y A+D YT+AL + + L NRAA Y Q++K ED
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAED 67
Query: 70 CSKSLEIVPDDPKALFR 86
+ + P KA R
Sbjct: 68 AELATVVDPKYSKAWSR 84
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVT--------------AEESHERAT 48
D+ + L++ GN F Q DY+ A+D Y AL E +
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108
N + YL + E S+ L+ + KALFRR +A A K +EA D K +
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 109 RVEPTNKAIQPVLSRLFAIVTKRMQE 134
R P A V++R IVT+R E
Sbjct: 125 RNHP---AAASVVAREMKIVTERRAE 147
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDC 70
+LK GN K ++E A+ FY KA+++ A NRAA Y K ++DC
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
+++ I P KA R A ++ K EA K ++P N+
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
K GN FK+GDY TA+ Y +A+K E A NRAA K + + ++DC
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 73 SLEIVPDDPKALFRRCQAYEAI---GKFEEAYTDAKHIHRVEPTNK 115
+ + K R+ A+ K + AY DA V+P+N+
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ---VDPSNE 115
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+LKE GN F Y A Y +A+ + A NRA YLK Q ++ + D
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 70 CSKSLEIVPDDPKALF--RRCQ----AY-EAIGKFEEAYTDAK 105
C ++LE+ KA F +CQ +Y EAI + AY+ AK
Sbjct: 66 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+LKE GN F Y A Y +A+ A NRA YLK Q ++ + D
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 60
Query: 70 CSKSLEIVPDDPKALF--RRCQ----AY-EAIGKFEEAYTDAK 105
C ++LE+ KA F +CQ +Y EAI + AY+ AK
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72
K+ GN+A+KQ D+E A Y KA+++ T N+AAVY ++ + + ++ C K
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDP----SNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 73 SLEI 76
++E+
Sbjct: 68 AVEV 71
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR- 123
+V++ CS L D+ KA F+R +A+ A+ +EA D + ++P A+ PV+SR
Sbjct: 84 EVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP---ALAPVVSRE 140
Query: 124 LFAIVTKRMQENEQLQNKVHNMFKY 148
L A+ + Q++E+ + + +F +
Sbjct: 141 LQALEARIRQKDEEDKARFRGIFSH 165
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
++ +L+ +AF GDY A+ F K L+V ++ R RA ++K+ + K
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL----RAECFIKEGEPRKA 196
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
I D + ++ D+ +A ++ Y +G E + ++ + +++ +K
Sbjct: 197 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
NKL ES + G Y A Y +K + + + K + + I
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
CS+ L++ PD+ AL R +AY ++EA D
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
RA V+L ++ + D +K +++ D A +R GK +EA D K + + P
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 113 TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146
+ + S+L + E ++L+++ N F
Sbjct: 126 SENEEKEAQSQLI-----KSDEMQRLRSQALNAF 154
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G F + D+ A+ YT+ +K E+ A NRAA K + I DC+K++E
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
P+ +A R+ A A+ ++ A
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASA 91
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 12 LKESGNSAFKQGD-------YETALDFYTKALK-----VTAEESHERATCLKNRAAVYLK 59
+KE GN FK+ + Y+ ALDF+ + + ++ + +C N A Y K
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 60 QNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118
K I+ SK L+I ++ KAL++ A G EEA + + P N I+
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 65 KVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124
+V++ CS L D+ KA F+R +A+ A+ +EA D + ++P A+ PV+SR
Sbjct: 78 EVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP---ALAPVVSRE 134
Query: 125 FAIVTKRMQE 134
+ R+++
Sbjct: 135 LQALEARIRQ 144
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKV 66
++ +L+ +AF GDY A+ F K L+V ++ R RA ++K+ + K
Sbjct: 141 DEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL----RAECFIKEGEPRKA 196
Query: 67 IEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115
I D + ++ D+ +A ++ Y +G E + ++ + +++ +K
Sbjct: 197 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
NKL ES + G Y A Y K + + + K + + I
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
CS+ L+ PD+ AL R +AY ++EA D
Sbjct: 318 CSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQD 351
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112
RA V+L ++ + D +K +++ D A +R GK +EA D K + + P
Sbjct: 66 RATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 113 TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMF 146
+ + S+L + E ++L+++ N F
Sbjct: 126 SENEEKEAQSQLI-----KSDEXQRLRSQALNAF 154
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE 75
G F + D+ A+ YT+ +K E+ A NRAA K + I DC+K++E
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 76 IVPDDPKALFRRCQAYEAIGKFEEA 100
P+ +A R+ A A+ ++ A
Sbjct: 202 KDPNFVRAYIRKATAQIAVKEYASA 226
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
+K K GN +K ++ A++ Y KA ++ H+ T L NRAA ++ + + I
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-----HKDITYLNNRAAAEYEKGEYETAIST 60
Query: 70 CSKSLE 75
+ ++E
Sbjct: 61 LNDAVE 66
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK 65
M+ + K KE GNS FKQG Y A+ Y + +TA+ + N+A +K + +
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQL--ITAQP--QNPVGYSNKAMALIKLGEYTQ 56
Query: 66 VIEDCSKSL 74
I+ C + L
Sbjct: 57 AIQMCQQGL 65
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ 62
D N N LKE G+ A A D Y AL++ A L N A + +Q
Sbjct: 272 DAYCNLANALKEKGSVA-------EAEDCYNTALRLCPT----HADSLNNLANIKREQGN 320
Query: 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113
++ + K+LE+ P+ A + GK +EA K R+ PT
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 242 GSMGGSDASIRPFADGSTRKLAEACRRF---------LVNPARDPDIRRWAAEGLAYLTL 292
G+ G+ + D S + + E R+ + + R PD+RRW AE TL
Sbjct: 251 GTASGTSSIAYTLKDASDKTVLEGSRKLESHGSGNLIVFDEQRLPDVRRWNAEHPELYTL 310
Query: 293 DAEVKEA 299
E+K+A
Sbjct: 311 LLELKDA 317
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 78 PDDPKALFRRCQAYEAIGKFE 98
PDDP+ L +C Y IG+F+
Sbjct: 188 PDDPRELIEQCAFYRLIGEFD 208
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 78 PDDPKALFRRCQAYEAIGKFE 98
PDDP+ L +C Y IG+F+
Sbjct: 188 PDDPRELIEQCAFYRLIGEFD 208
>pdb|1IQZ|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
Thermoproteolyticus (Form I)
pdb|1IR0|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
Thermoproteolyticus (Form Ii)
pdb|1WTF|A Chain A, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
pdb|1WTF|B Chain B, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
pdb|1WTF|C Chain C, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
pdb|1WTF|D Chain D, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
Length = 81
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 20/68 (29%)
Query: 277 PDIRRWAAEGLAYLTLD-----AEVKEALIEDKPXXXXXXXXXXXXKYKNVWNGTQSDAL 331
PDI + +G+AY+TLD EV + LI+D + + G +D++
Sbjct: 22 PDIYDYDEDGIAYVTLDDNQGIVEVPDILIDD---------------MMDAFEGCPTDSI 66
Query: 332 KDVDKAFD 339
K D+ FD
Sbjct: 67 KVADEPFD 74
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 78 PDDPKALFRRCQAYEAIGKFE 98
PDDP+ L +C Y IG+F+
Sbjct: 188 PDDPRELIEQCAFYRLIGEFD 208
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93
++ CL+ A+++ +ND ED S+++E D+ K + C AY+A
Sbjct: 17 QSFCLEGTLALWVPALENDS--EDDSEAIETADDNEKLFKKECVAYDA 62
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From
Schizosaccharomyces Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From
Schizosaccharomyces Pombe
Length = 1139
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93
++ CL+ A+++ +ND ED S+++E D+ K + C AY+A
Sbjct: 17 QSFCLEGTLALWVPALENDS--EDDSEAIETADDNEKLFKKECVAYDA 62
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93
++ CL+ A+++ +ND ED S+++E D+ K + C AY+A
Sbjct: 15 QSFCLEGTLALWVPALENDS--EDDSEAIETADDNEKLFKKECVAYDA 60
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%)
Query: 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69
NKL ES + G Y A Y K + + + K + + I
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294
Query: 70 CSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103
CS+ L+ PD+ AL R +AY ++EA D
Sbjct: 295 CSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQD 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,714,380
Number of Sequences: 62578
Number of extensions: 399618
Number of successful extensions: 1157
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 97
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)