Query psy4703
Match_columns 401
No_of_seqs 402 out of 2953
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:42:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4151|consensus 99.9 5.3E-22 1.2E-26 206.0 16.4 360 7-385 51-474 (748)
2 KOG0553|consensus 99.8 2.9E-20 6.4E-25 175.0 12.7 122 6-131 78-199 (304)
3 KOG0550|consensus 99.8 1.6E-17 3.5E-22 161.6 17.8 222 5-250 245-476 (486)
4 KOG0543|consensus 99.7 2.8E-17 6.2E-22 160.6 16.6 137 7-151 206-354 (397)
5 KOG4234|consensus 99.7 3.2E-17 6.9E-22 146.2 14.6 131 6-136 92-223 (271)
6 KOG0548|consensus 99.7 3.9E-17 8.5E-22 163.5 16.6 177 4-193 353-532 (539)
7 KOG1126|consensus 99.7 1.5E-16 3.3E-21 162.7 11.6 164 1-176 413-577 (638)
8 PRK15359 type III secretion sy 99.7 1.4E-15 3E-20 132.6 15.4 121 2-129 20-140 (144)
9 KOG0624|consensus 99.6 1.3E-15 2.9E-20 145.4 12.6 190 9-221 269-468 (504)
10 KOG0547|consensus 99.6 3E-15 6.5E-20 148.4 13.8 124 7-134 113-237 (606)
11 KOG4626|consensus 99.6 4E-14 8.6E-19 143.7 20.9 139 1-151 244-382 (966)
12 KOG0624|consensus 99.6 1.1E-13 2.3E-18 132.4 21.4 213 4-229 33-256 (504)
13 PLN03088 SGT1, suppressor of 99.6 2.3E-14 4.9E-19 143.0 16.7 117 10-130 3-119 (356)
14 KOG4648|consensus 99.6 3.1E-15 6.6E-20 142.9 9.3 115 8-126 96-210 (536)
15 TIGR02552 LcrH_SycD type III s 99.6 5.3E-14 1.1E-18 120.0 15.8 123 1-127 9-131 (135)
16 KOG0548|consensus 99.6 1.2E-14 2.6E-19 145.9 11.2 113 9-125 2-114 (539)
17 TIGR00990 3a0801s09 mitochondr 99.5 3.1E-13 6.8E-18 144.2 20.5 156 5-172 327-483 (615)
18 TIGR00990 3a0801s09 mitochondr 99.5 6.5E-13 1.4E-17 141.8 21.4 138 2-151 358-495 (615)
19 KOG4626|consensus 99.5 1.3E-13 2.9E-18 139.9 14.9 129 2-134 313-441 (966)
20 KOG0551|consensus 99.5 2.2E-13 4.9E-18 129.8 15.4 113 7-119 79-191 (390)
21 KOG1155|consensus 99.5 8.8E-13 1.9E-17 130.4 20.0 133 11-155 332-464 (559)
22 PRK15363 pathogenicity island 99.5 4.4E-13 9.5E-18 117.0 15.6 110 3-116 28-138 (157)
23 PRK10370 formate-dependent nit 99.5 6.3E-13 1.4E-17 122.0 15.7 117 2-122 66-185 (198)
24 PRK11189 lipoprotein NlpI; Pro 99.5 1.5E-12 3.2E-17 126.8 17.8 106 7-116 62-167 (296)
25 PRK12370 invasion protein regu 99.5 1.6E-12 3.4E-17 137.2 18.7 163 2-176 288-461 (553)
26 KOG1155|consensus 99.4 6.3E-12 1.4E-16 124.4 18.4 136 1-140 356-491 (559)
27 TIGR02521 type_IV_pilW type IV 99.4 1.3E-11 2.7E-16 112.3 18.9 157 7-175 29-188 (234)
28 PRK12370 invasion protein regu 99.4 6.6E-12 1.4E-16 132.5 17.8 131 2-136 331-462 (553)
29 TIGR02795 tol_pal_ybgF tol-pal 99.4 7.5E-12 1.6E-16 103.4 14.3 113 9-122 2-117 (119)
30 TIGR02917 PEP_TPR_lipo putativ 99.4 7.4E-10 1.6E-14 120.4 33.8 158 2-171 526-684 (899)
31 KOG0545|consensus 99.4 4.3E-12 9.3E-17 116.7 13.2 125 7-131 176-315 (329)
32 TIGR02521 type_IV_pilW type IV 99.4 4.7E-11 1E-15 108.5 20.1 138 2-151 58-197 (234)
33 PRK15174 Vi polysaccharide exp 99.4 4E-11 8.8E-16 128.9 21.1 152 13-176 216-372 (656)
34 PRK15359 type III secretion sy 99.4 1.5E-11 3.4E-16 107.0 14.7 116 29-159 13-129 (144)
35 TIGR03302 OM_YfiO outer membra 99.4 4.2E-11 9.2E-16 111.9 18.6 119 5-124 29-158 (235)
36 TIGR02917 PEP_TPR_lipo putativ 99.4 7.1E-10 1.5E-14 120.5 30.0 165 2-175 49-246 (899)
37 KOG0547|consensus 99.4 6E-11 1.3E-15 118.2 19.3 135 5-151 356-490 (606)
38 KOG1126|consensus 99.4 1.1E-11 2.4E-16 127.4 14.4 129 2-134 448-576 (638)
39 PRK09782 bacteriophage N4 rece 99.3 3.2E-11 6.9E-16 133.8 18.0 125 2-131 603-727 (987)
40 PRK09782 bacteriophage N4 rece 99.3 5E-11 1.1E-15 132.3 19.5 134 5-151 572-705 (987)
41 COG3063 PilF Tfp pilus assembl 99.3 9.5E-11 2.1E-15 107.3 17.7 152 8-172 34-189 (250)
42 PRK15174 Vi polysaccharide exp 99.3 5.2E-09 1.1E-13 112.7 33.3 116 2-121 69-184 (656)
43 PRK02603 photosystem I assembl 99.3 4.2E-11 9E-16 107.2 14.5 111 3-114 29-153 (172)
44 PRK15179 Vi polysaccharide bio 99.3 7.2E-11 1.6E-15 126.6 18.3 136 4-151 81-216 (694)
45 PRK10370 formate-dependent nit 99.3 7.8E-11 1.7E-15 108.1 16.0 118 22-151 52-172 (198)
46 PF13414 TPR_11: TPR repeat; P 99.3 1.1E-11 2.5E-16 93.4 8.1 67 46-112 2-69 (69)
47 KOG4642|consensus 99.3 2.9E-11 6.4E-16 110.9 12.0 116 7-126 8-128 (284)
48 PRK11447 cellulose synthase su 99.3 2.5E-10 5.4E-15 130.2 21.4 124 2-126 296-430 (1157)
49 PRK11447 cellulose synthase su 99.3 1.3E-09 2.9E-14 124.2 27.1 125 2-130 378-544 (1157)
50 KOG0376|consensus 99.3 7.9E-12 1.7E-16 124.8 7.3 120 8-131 3-122 (476)
51 PLN02789 farnesyltranstransfer 99.3 1.6E-10 3.5E-15 113.6 16.4 124 1-128 63-189 (320)
52 COG3063 PilF Tfp pilus assembl 99.3 2.3E-10 5E-15 104.8 16.1 132 1-136 61-194 (250)
53 PRK11788 tetratricopeptide rep 99.3 1.6E-09 3.4E-14 108.5 23.6 164 2-174 62-232 (389)
54 PRK11189 lipoprotein NlpI; Pro 99.3 2.4E-10 5.2E-15 111.3 17.1 122 22-152 39-161 (296)
55 PRK11788 tetratricopeptide rep 99.2 4.6E-10 9.9E-15 112.4 19.1 124 9-136 107-235 (389)
56 PF13414 TPR_11: TPR repeat; P 99.2 5.1E-11 1.1E-15 89.8 8.7 67 8-78 2-69 (69)
57 TIGR03302 OM_YfiO outer membra 99.2 2.9E-10 6.4E-15 106.2 15.8 133 3-136 61-224 (235)
58 cd00189 TPR Tetratricopeptide 99.2 1.9E-10 4.2E-15 88.2 12.0 99 11-113 2-100 (100)
59 PF12895 Apc3: Anaphase-promot 99.2 4.7E-11 1E-15 93.9 7.9 84 21-107 1-84 (84)
60 TIGR02552 LcrH_SycD type III s 99.2 3.6E-10 7.9E-15 96.2 13.8 110 30-151 4-113 (135)
61 KOG2002|consensus 99.2 6.3E-09 1.4E-13 111.0 24.6 126 3-129 264-390 (1018)
62 CHL00033 ycf3 photosystem I as 99.2 6.5E-10 1.4E-14 98.9 14.8 107 7-114 33-153 (168)
63 PRK10049 pgaA outer membrane p 99.2 1.9E-08 4.2E-13 110.2 29.1 124 4-132 44-167 (765)
64 KOG1125|consensus 99.2 2.3E-10 5E-15 116.2 12.9 134 2-136 312-519 (579)
65 KOG0553|consensus 99.1 3.8E-10 8.3E-15 107.0 12.3 108 46-161 80-187 (304)
66 KOG1125|consensus 99.1 1.2E-10 2.6E-15 118.2 8.9 120 7-130 428-557 (579)
67 PRK15331 chaperone protein Sic 99.1 1E-09 2.2E-14 96.4 13.3 106 4-114 32-137 (165)
68 PF13429 TPR_15: Tetratricopep 99.1 2.6E-10 5.6E-15 109.8 10.5 127 6-136 143-269 (280)
69 COG5010 TadD Flp pilus assembl 99.1 1.7E-09 3.7E-14 100.8 14.4 129 4-136 95-223 (257)
70 KOG0550|consensus 99.1 7.9E-10 1.7E-14 108.5 12.6 145 2-155 196-353 (486)
71 PRK10803 tol-pal system protei 99.1 2.9E-09 6.4E-14 101.8 16.1 115 9-124 142-260 (263)
72 KOG1173|consensus 99.1 6.4E-09 1.4E-13 105.5 18.4 225 1-242 304-535 (611)
73 PF13432 TPR_16: Tetratricopep 99.1 4.7E-10 1E-14 83.6 7.5 64 52-115 2-65 (65)
74 PLN02789 farnesyltranstransfer 99.1 9.9E-09 2.2E-13 100.9 19.0 148 5-164 33-184 (320)
75 KOG2076|consensus 99.1 9.6E-09 2.1E-13 108.9 19.8 132 8-151 138-269 (895)
76 PF13429 TPR_15: Tetratricopep 99.1 2.6E-09 5.6E-14 102.8 14.5 160 8-177 109-269 (280)
77 KOG1173|consensus 99.1 9.1E-10 2E-14 111.6 11.5 126 2-127 407-535 (611)
78 COG5010 TadD Flp pilus assembl 99.0 1E-08 2.2E-13 95.7 16.3 159 3-174 61-220 (257)
79 KOG2003|consensus 99.0 3.5E-09 7.6E-14 104.8 13.1 164 5-172 486-676 (840)
80 COG4235 Cytochrome c biogenesi 99.0 7E-09 1.5E-13 98.9 14.8 119 2-124 149-270 (287)
81 PRK15179 Vi polysaccharide bio 99.0 7.3E-09 1.6E-13 111.3 16.1 109 2-114 113-221 (694)
82 PRK15363 pathogenicity island 99.0 9.8E-09 2.1E-13 89.8 13.7 92 45-136 33-124 (157)
83 PRK10049 pgaA outer membrane p 99.0 3.4E-08 7.3E-13 108.3 20.1 150 5-167 11-161 (765)
84 CHL00033 ycf3 photosystem I as 99.0 2.1E-08 4.6E-13 89.2 14.9 133 16-151 6-148 (168)
85 PF13525 YfiO: Outer membrane 99.0 1.4E-07 3E-12 86.9 20.7 117 7-124 3-133 (203)
86 PRK10866 outer membrane biogen 99.0 1.5E-07 3.3E-12 89.1 21.4 115 7-122 30-165 (243)
87 KOG3060|consensus 98.9 1.3E-07 2.8E-12 88.0 19.9 140 6-154 83-222 (289)
88 PF13512 TPR_18: Tetratricopep 98.9 3.1E-08 6.8E-13 85.2 14.0 112 8-120 9-138 (142)
89 PF13432 TPR_16: Tetratricopep 98.9 6.6E-09 1.4E-13 77.3 8.7 65 13-81 1-65 (65)
90 KOG1840|consensus 98.9 2.3E-07 5E-12 95.9 22.5 253 4-270 194-480 (508)
91 PF13371 TPR_9: Tetratricopept 98.9 6.5E-09 1.4E-13 79.0 8.3 69 54-122 2-70 (73)
92 KOG4555|consensus 98.9 7.8E-08 1.7E-12 81.0 14.7 102 8-113 42-147 (175)
93 KOG1840|consensus 98.9 2.4E-07 5.2E-12 95.8 21.4 192 5-200 237-449 (508)
94 PRK14574 hmsH outer membrane p 98.9 1.6E-07 3.5E-12 102.8 20.7 140 4-155 29-168 (822)
95 COG4783 Putative Zn-dependent 98.9 7.2E-08 1.6E-12 96.8 16.4 127 6-136 303-429 (484)
96 PLN03088 SGT1, suppressor of 98.9 4.4E-08 9.4E-13 98.0 14.9 104 50-161 5-109 (356)
97 KOG2076|consensus 98.9 2E-07 4.4E-12 99.1 20.1 108 1-112 165-272 (895)
98 KOG2002|consensus 98.9 1.5E-07 3.3E-12 100.6 19.2 171 2-179 157-330 (1018)
99 TIGR02795 tol_pal_ybgF tol-pal 98.9 5.6E-08 1.2E-12 80.0 12.9 98 47-152 2-105 (119)
100 cd00189 TPR Tetratricopeptide 98.8 8.2E-08 1.8E-12 73.3 12.8 87 49-135 2-88 (100)
101 PRK02603 photosystem I assembl 98.8 9.2E-08 2E-12 85.5 14.8 90 44-133 32-124 (172)
102 PF09976 TPR_21: Tetratricopep 98.8 2.9E-08 6.2E-13 86.3 10.8 131 7-139 9-142 (145)
103 TIGR00540 hemY_coli hemY prote 98.8 3.4E-06 7.4E-11 85.9 27.1 236 8-277 83-333 (409)
104 PRK10747 putative protoheme IX 98.8 1.3E-06 2.8E-11 88.6 23.8 123 8-135 83-207 (398)
105 PF14559 TPR_19: Tetratricopep 98.8 1.2E-08 2.7E-13 76.3 6.7 66 58-123 2-67 (68)
106 PRK14574 hmsH outer membrane p 98.8 2.7E-07 5.8E-12 101.1 18.0 156 2-170 61-217 (822)
107 KOG1308|consensus 98.8 8E-09 1.7E-13 99.5 5.3 117 7-128 112-228 (377)
108 COG1729 Uncharacterized protei 98.8 2.2E-07 4.9E-12 87.6 14.6 112 9-121 141-255 (262)
109 PF12688 TPR_5: Tetratrico pep 98.7 2.4E-07 5.2E-12 78.1 13.3 99 10-109 2-103 (120)
110 KOG1174|consensus 98.7 3.6E-07 7.9E-12 90.0 16.1 157 2-171 327-519 (564)
111 COG2956 Predicted N-acetylgluc 98.7 4E-06 8.7E-11 80.6 22.8 198 11-229 109-315 (389)
112 KOG4162|consensus 98.7 8.7E-08 1.9E-12 100.4 12.4 121 14-138 655-777 (799)
113 PF09976 TPR_21: Tetratricopep 98.7 5.6E-07 1.2E-11 78.2 15.6 98 9-108 48-145 (145)
114 PRK10747 putative protoheme IX 98.7 1.4E-05 3.1E-10 81.1 27.7 106 10-119 119-225 (398)
115 cd05804 StaR_like StaR_like; a 98.7 2.7E-07 5.8E-12 91.2 14.7 129 7-136 41-207 (355)
116 PRK14720 transcript cleavage f 98.7 1.4E-06 3.1E-11 95.0 21.2 127 3-136 25-170 (906)
117 PF13371 TPR_9: Tetratricopept 98.7 1.1E-07 2.4E-12 72.2 9.1 70 16-89 2-71 (73)
118 KOG1156|consensus 98.7 2.7E-06 5.9E-11 88.0 21.6 117 11-131 9-125 (700)
119 cd05804 StaR_like StaR_like; a 98.7 7.8E-07 1.7E-11 87.9 17.2 162 5-175 2-205 (355)
120 COG4785 NlpI Lipoprotein NlpI, 98.7 2.3E-06 5E-11 78.2 18.3 110 6-119 62-171 (297)
121 PF14559 TPR_19: Tetratricopep 98.7 7E-08 1.5E-12 72.2 7.0 67 19-89 1-67 (68)
122 KOG0495|consensus 98.7 1.7E-06 3.7E-11 89.5 18.9 130 2-136 611-740 (913)
123 COG4783 Putative Zn-dependent 98.7 4.9E-07 1.1E-11 90.9 14.8 123 2-128 333-455 (484)
124 PF13424 TPR_12: Tetratricopep 98.7 7.7E-08 1.7E-12 74.2 7.2 72 5-76 1-75 (78)
125 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1E-07 2.2E-12 96.0 9.7 68 43-110 71-141 (453)
126 KOG1129|consensus 98.6 1.4E-07 2.9E-12 90.6 9.3 154 3-171 284-440 (478)
127 COG2956 Predicted N-acetylgluc 98.6 2.3E-06 5.1E-11 82.2 17.0 137 9-154 141-280 (389)
128 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 6.6E-07 1.4E-11 90.1 13.7 73 4-77 70-142 (453)
129 KOG3060|consensus 98.6 1.9E-05 4.1E-10 73.8 22.1 134 9-154 52-185 (289)
130 PF13424 TPR_12: Tetratricopep 98.6 1.1E-07 2.3E-12 73.3 6.3 67 44-110 2-75 (78)
131 KOG1174|consensus 98.6 1.9E-06 4.2E-11 85.0 16.0 132 4-136 227-389 (564)
132 KOG4162|consensus 98.6 1.1E-06 2.4E-11 92.3 14.5 109 5-117 680-790 (799)
133 KOG1128|consensus 98.6 3.4E-07 7.4E-12 95.6 10.4 121 12-136 488-608 (777)
134 TIGR00540 hemY_coli hemY prote 98.5 1.4E-06 3E-11 88.8 14.7 127 7-136 261-391 (409)
135 KOG1129|consensus 98.5 1.7E-07 3.7E-12 90.0 6.1 131 2-136 317-450 (478)
136 PRK10153 DNA-binding transcrip 98.5 1.2E-06 2.6E-11 91.6 12.5 112 2-116 369-488 (517)
137 PRK11906 transcriptional regul 98.5 7.3E-06 1.6E-10 82.8 17.2 132 11-154 257-403 (458)
138 PRK10153 DNA-binding transcrip 98.5 5E-06 1.1E-10 87.0 16.6 148 8-169 338-498 (517)
139 PRK14720 transcript cleavage f 98.5 5.3E-06 1.1E-10 90.7 17.1 163 2-169 58-270 (906)
140 PF06552 TOM20_plant: Plant sp 98.4 3.5E-06 7.6E-11 75.0 12.4 97 25-125 7-124 (186)
141 PRK15331 chaperone protein Sic 98.4 1.1E-05 2.5E-10 71.0 15.5 111 45-163 35-145 (165)
142 KOG1127|consensus 98.4 5.2E-06 1.1E-10 89.3 14.7 129 2-134 485-615 (1238)
143 PRK10803 tol-pal system protei 98.4 7.7E-06 1.7E-10 78.3 14.6 104 47-158 142-252 (263)
144 KOG1156|consensus 98.4 9.4E-06 2E-10 84.1 15.5 160 2-171 34-193 (700)
145 KOG1310|consensus 98.4 1.2E-06 2.5E-11 88.7 8.2 112 5-120 370-484 (758)
146 COG4235 Cytochrome c biogenesi 98.3 1.9E-05 4.2E-10 75.5 16.0 116 25-152 138-256 (287)
147 PF12895 Apc3: Anaphase-promot 98.3 1E-06 2.2E-11 69.1 6.0 76 60-136 2-79 (84)
148 PRK11906 transcriptional regul 98.3 5.9E-06 1.3E-10 83.5 12.6 108 3-114 289-405 (458)
149 KOG4648|consensus 98.3 1.9E-06 4.1E-11 83.3 8.5 102 50-159 100-202 (536)
150 KOG4234|consensus 98.3 2.2E-05 4.8E-10 71.0 13.9 101 47-155 95-200 (271)
151 PRK10866 outer membrane biogen 98.3 4.2E-05 9E-10 72.5 16.5 118 9-127 69-221 (243)
152 COG4105 ComL DNA uptake lipopr 98.3 0.00043 9.3E-09 65.1 22.8 113 8-121 33-156 (254)
153 KOG0543|consensus 98.3 2E-05 4.4E-10 78.0 14.6 118 46-171 207-339 (397)
154 PF13525 YfiO: Outer membrane 98.3 5.7E-05 1.2E-09 69.5 16.7 120 6-126 39-186 (203)
155 KOG0546|consensus 98.3 1.6E-06 3.5E-11 84.1 6.4 126 9-134 222-362 (372)
156 KOG1128|consensus 98.2 2.9E-05 6.3E-10 81.5 15.7 91 46-136 484-574 (777)
157 COG3071 HemY Uncharacterized e 98.2 0.00059 1.3E-08 67.5 23.0 240 8-278 83-329 (400)
158 PLN03218 maturation of RBCL 1; 98.2 0.0018 3.9E-08 73.4 30.0 97 9-110 542-643 (1060)
159 PF12569 NARP1: NMDA receptor- 98.2 7.7E-05 1.7E-09 77.9 17.8 86 49-134 196-281 (517)
160 KOG1127|consensus 98.2 0.00015 3.3E-09 78.4 20.1 133 2-136 519-651 (1238)
161 PF12688 TPR_5: Tetratrico pep 98.2 2.7E-05 5.8E-10 65.7 11.4 89 48-136 2-96 (120)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 1.8E-05 3.9E-10 79.8 11.6 114 19-139 179-292 (395)
163 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.6E-05 9.9E-10 76.9 14.1 98 9-110 200-297 (395)
164 KOG2003|consensus 98.1 0.00019 4.1E-09 71.9 17.1 129 4-136 519-647 (840)
165 PF00515 TPR_1: Tetratricopept 98.0 9.2E-06 2E-10 52.2 4.4 32 82-113 2-33 (34)
166 KOG2376|consensus 98.0 0.00068 1.5E-08 70.0 20.0 101 6-114 43-143 (652)
167 COG4700 Uncharacterized protei 98.0 0.00033 7.1E-09 62.9 15.6 123 9-135 89-213 (251)
168 PF06552 TOM20_plant: Plant sp 98.0 8.6E-05 1.9E-09 66.2 12.0 100 63-162 7-119 (186)
169 PF11701 UNC45-central: Myosin 98.0 7.7E-05 1.7E-09 65.9 11.7 107 134-241 36-157 (157)
170 PF13431 TPR_17: Tetratricopep 98.0 6.3E-06 1.4E-10 53.5 3.3 33 69-101 1-33 (34)
171 COG1729 Uncharacterized protei 98.0 0.00014 3E-09 68.9 13.6 97 50-151 144-243 (262)
172 PF00515 TPR_1: Tetratricopept 98.0 1.3E-05 2.9E-10 51.5 4.4 34 47-80 1-34 (34)
173 PF14938 SNAP: Soluble NSF att 98.0 3.7E-05 8E-10 74.4 9.3 134 9-151 35-183 (282)
174 PF03704 BTAD: Bacterial trans 97.9 0.00026 5.7E-09 61.1 13.6 100 9-108 6-123 (146)
175 PF04733 Coatomer_E: Coatomer 97.9 0.0001 2.2E-09 71.7 11.9 120 8-131 130-251 (290)
176 PF13428 TPR_14: Tetratricopep 97.9 1.8E-05 4E-10 54.2 4.8 40 49-88 3-42 (44)
177 PF13428 TPR_14: Tetratricopep 97.9 2.4E-05 5.2E-10 53.6 5.3 42 82-123 2-43 (44)
178 PF07719 TPR_2: Tetratricopept 97.9 2.6E-05 5.6E-10 49.8 5.1 33 82-114 2-34 (34)
179 PF12569 NARP1: NMDA receptor- 97.9 0.00076 1.6E-08 70.6 17.9 137 10-151 195-340 (517)
180 PF14938 SNAP: Soluble NSF att 97.9 0.00045 9.9E-09 66.8 15.1 105 9-114 75-188 (282)
181 KOG1130|consensus 97.8 8.9E-05 1.9E-09 73.5 9.7 159 11-173 197-372 (639)
182 PF04733 Coatomer_E: Coatomer 97.8 0.00015 3.2E-09 70.5 10.9 109 6-118 162-273 (290)
183 KOG3785|consensus 97.8 0.00089 1.9E-08 65.5 15.3 107 17-130 30-136 (557)
184 KOG1130|consensus 97.8 0.00012 2.6E-09 72.7 9.3 130 7-136 133-296 (639)
185 COG4700 Uncharacterized protei 97.8 0.0024 5.1E-08 57.5 16.5 151 16-179 63-216 (251)
186 PLN03218 maturation of RBCL 1; 97.8 0.0061 1.3E-07 69.1 23.9 124 8-136 506-635 (1060)
187 PF07719 TPR_2: Tetratricopept 97.7 7.3E-05 1.6E-09 47.7 5.1 33 48-80 2-34 (34)
188 KOG4642|consensus 97.7 7.9E-05 1.7E-09 69.1 7.2 87 50-136 13-99 (284)
189 KOG4555|consensus 97.7 0.00041 9E-09 58.8 10.4 65 50-114 46-110 (175)
190 KOG0495|consensus 97.7 0.0006 1.3E-08 71.2 13.6 196 9-228 651-849 (913)
191 PF13512 TPR_18: Tetratricopep 97.7 0.0023 5E-08 55.3 14.9 77 45-121 8-87 (142)
192 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0027 5.8E-08 55.1 15.8 121 5-129 91-216 (291)
193 KOG2796|consensus 97.6 0.00043 9.3E-09 65.2 10.2 109 6-114 209-319 (366)
194 KOG3785|consensus 97.6 0.012 2.6E-07 57.8 20.3 115 13-131 61-201 (557)
195 PRK10941 hypothetical protein; 97.6 0.00069 1.5E-08 65.1 11.6 82 44-125 178-259 (269)
196 KOG2376|consensus 97.5 0.0036 7.7E-08 64.8 15.7 120 9-136 12-131 (652)
197 PF12968 DUF3856: Domain of Un 97.5 0.0017 3.8E-08 54.1 10.8 98 13-110 13-129 (144)
198 PF13181 TPR_8: Tetratricopept 97.4 0.00024 5.1E-09 45.4 4.2 32 82-113 2-33 (34)
199 COG0457 NrfG FOG: TPR repeat [ 97.4 0.011 2.4E-07 51.2 16.0 106 18-124 139-245 (291)
200 KOG4340|consensus 97.4 0.0026 5.6E-08 61.1 12.4 130 3-136 38-199 (459)
201 PLN03081 pentatricopeptide (PP 97.4 0.011 2.3E-07 64.5 18.9 116 12-134 262-379 (697)
202 PF13431 TPR_17: Tetratricopep 97.4 0.00018 3.8E-09 46.6 3.0 34 31-68 1-34 (34)
203 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00098 2.1E-08 47.7 7.1 46 82-127 2-47 (53)
204 PLN03081 pentatricopeptide (PP 97.3 0.0049 1.1E-07 67.1 15.7 123 7-136 288-412 (697)
205 KOG0551|consensus 97.3 0.0085 1.8E-07 58.3 15.0 92 45-136 79-174 (390)
206 COG3118 Thioredoxin domain-con 97.3 0.012 2.6E-07 56.6 15.5 98 9-110 134-265 (304)
207 KOG0376|consensus 97.3 0.00055 1.2E-08 69.3 6.8 85 48-132 5-89 (476)
208 PF13181 TPR_8: Tetratricopept 97.2 0.00074 1.6E-08 43.0 4.3 32 48-79 2-33 (34)
209 COG4785 NlpI Lipoprotein NlpI, 97.2 0.00098 2.1E-08 61.3 6.4 79 44-122 62-140 (297)
210 PLN03077 Protein ECB2; Provisi 97.2 0.013 2.8E-07 65.4 16.7 153 7-173 552-708 (857)
211 KOG3824|consensus 97.1 0.0071 1.5E-07 58.3 12.3 92 41-132 110-201 (472)
212 COG3071 HemY Uncharacterized e 97.1 0.087 1.9E-06 52.5 19.5 170 6-179 115-286 (400)
213 KOG1915|consensus 97.0 0.04 8.8E-07 56.1 17.1 124 21-154 378-502 (677)
214 COG4105 ComL DNA uptake lipopr 97.0 0.081 1.8E-06 50.0 18.2 122 8-130 70-216 (254)
215 KOG2053|consensus 97.0 0.016 3.5E-07 62.6 14.7 113 17-134 17-129 (932)
216 PF03704 BTAD: Bacterial trans 97.0 0.049 1.1E-06 46.8 15.5 100 51-150 10-131 (146)
217 KOG3081|consensus 96.9 0.017 3.8E-07 54.7 12.8 85 46-130 168-256 (299)
218 KOG1941|consensus 96.9 0.12 2.5E-06 51.2 18.5 93 44-136 80-183 (518)
219 COG2976 Uncharacterized protei 96.9 0.015 3.3E-07 52.7 11.5 102 11-114 91-192 (207)
220 KOG1915|consensus 96.9 0.17 3.7E-06 51.7 19.8 132 7-151 71-202 (677)
221 PF10300 DUF3808: Protein of u 96.9 0.0058 1.3E-07 63.5 10.0 105 3-108 261-374 (468)
222 KOG0545|consensus 96.9 0.019 4.1E-07 53.8 12.1 82 46-127 177-276 (329)
223 KOG4507|consensus 96.8 0.0025 5.3E-08 65.9 6.4 108 14-124 612-719 (886)
224 KOG2053|consensus 96.8 0.29 6.4E-06 53.3 22.0 173 2-179 36-213 (932)
225 KOG1941|consensus 96.8 0.009 2E-07 58.8 9.8 127 10-136 123-267 (518)
226 PF13174 TPR_6: Tetratricopept 96.8 0.0025 5.4E-08 40.0 4.2 31 83-113 2-32 (33)
227 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0068 1.5E-07 43.4 6.6 41 48-88 2-42 (53)
228 PF15015 NYD-SP12_N: Spermatog 96.7 0.0068 1.5E-07 60.6 8.8 96 13-108 180-289 (569)
229 PF04781 DUF627: Protein of un 96.7 0.017 3.6E-07 47.7 9.7 95 15-110 2-107 (111)
230 PLN03077 Protein ECB2; Provisi 96.7 0.078 1.7E-06 59.2 18.1 105 10-121 456-596 (857)
231 KOG1308|consensus 96.7 0.00096 2.1E-08 65.0 2.6 83 54-136 121-203 (377)
232 PRK04841 transcriptional regul 96.7 0.091 2E-06 58.7 18.4 100 10-110 453-560 (903)
233 KOG2610|consensus 96.7 0.011 2.4E-07 57.7 9.4 102 4-106 132-234 (491)
234 KOG4507|consensus 96.6 0.04 8.6E-07 57.3 13.8 110 3-114 207-316 (886)
235 PF14561 TPR_20: Tetratricopep 96.6 0.03 6.6E-07 44.6 10.3 65 66-130 7-73 (90)
236 KOG2471|consensus 96.6 0.0054 1.2E-07 62.3 7.1 124 7-131 238-385 (696)
237 PF05843 Suf: Suppressor of fo 96.6 0.043 9.4E-07 53.0 13.3 115 11-129 3-121 (280)
238 smart00028 TPR Tetratricopepti 96.6 0.0036 7.8E-08 37.6 3.7 30 83-112 3-32 (34)
239 KOG4340|consensus 96.5 0.028 6E-07 54.2 11.0 85 19-107 20-104 (459)
240 PRK04841 transcriptional regul 96.5 0.056 1.2E-06 60.4 15.3 125 10-134 492-631 (903)
241 PF09986 DUF2225: Uncharacteri 96.5 0.039 8.4E-07 51.3 11.7 96 19-114 87-198 (214)
242 smart00028 TPR Tetratricopepti 96.4 0.0049 1.1E-07 37.0 3.8 32 48-79 2-33 (34)
243 PF13176 TPR_7: Tetratricopept 96.4 0.0056 1.2E-07 39.9 4.0 26 83-108 1-26 (36)
244 PF13176 TPR_7: Tetratricopept 96.4 0.0063 1.4E-07 39.6 4.2 25 50-74 2-26 (36)
245 PF13174 TPR_6: Tetratricopept 96.3 0.0073 1.6E-07 37.8 4.2 32 49-80 2-33 (33)
246 COG2912 Uncharacterized conser 96.3 0.054 1.2E-06 51.7 11.7 80 45-124 179-258 (269)
247 COG4976 Predicted methyltransf 96.3 0.0054 1.2E-07 56.9 4.8 61 56-116 4-64 (287)
248 KOG4814|consensus 96.3 0.037 7.9E-07 58.1 11.2 99 11-110 356-457 (872)
249 KOG3364|consensus 96.3 0.04 8.6E-07 47.1 9.5 83 46-128 31-118 (149)
250 KOG2796|consensus 96.1 0.11 2.4E-06 49.3 12.5 121 13-136 181-307 (366)
251 PRK10941 hypothetical protein; 96.1 0.065 1.4E-06 51.5 11.4 77 11-91 183-259 (269)
252 PF10300 DUF3808: Protein of u 96.1 0.089 1.9E-06 54.7 13.3 96 22-121 246-345 (468)
253 KOG3081|consensus 96.1 0.27 5.7E-06 46.9 14.8 91 22-116 186-277 (299)
254 KOG1070|consensus 96.0 0.43 9.3E-06 54.4 18.2 109 20-133 1508-1618(1710)
255 KOG1586|consensus 96.0 0.65 1.4E-05 43.5 16.6 141 8-151 33-182 (288)
256 PRK13184 pknD serine/threonine 95.9 1 2.3E-05 50.5 20.8 115 16-132 482-603 (932)
257 PF02259 FAT: FAT domain; Int 95.8 0.99 2.1E-05 44.2 18.9 127 5-131 142-308 (352)
258 PF10602 RPN7: 26S proteasome 95.8 0.16 3.4E-06 45.8 11.7 99 9-108 36-140 (177)
259 KOG3824|consensus 95.8 0.035 7.6E-07 53.7 7.6 79 9-91 116-194 (472)
260 PF10579 Rapsyn_N: Rapsyn N-te 95.7 0.094 2E-06 40.6 8.3 68 8-76 5-72 (80)
261 KOG2047|consensus 95.7 1.6 3.4E-05 46.4 19.7 138 9-151 425-578 (835)
262 KOG2610|consensus 95.7 0.15 3.2E-06 50.0 11.5 119 12-134 106-228 (491)
263 COG3118 Thioredoxin domain-con 95.7 0.21 4.5E-06 48.2 12.4 124 49-179 136-259 (304)
264 PF04184 ST7: ST7 protein; In 95.4 0.2 4.4E-06 51.5 11.8 56 51-106 263-320 (539)
265 KOG1586|consensus 95.3 2.2 4.8E-05 40.1 17.5 108 9-117 73-190 (288)
266 KOG3617|consensus 95.2 6.2 0.00013 43.3 22.6 269 10-317 859-1185(1416)
267 KOG2396|consensus 95.1 0.45 9.8E-06 48.9 13.4 101 26-130 88-189 (568)
268 COG4976 Predicted methyltransf 95.1 0.035 7.5E-07 51.7 5.0 61 17-81 3-63 (287)
269 PF13281 DUF4071: Domain of un 95.0 4.3 9.3E-05 40.9 19.9 135 44-178 138-281 (374)
270 PF09613 HrpB1_HrpK: Bacterial 95.0 0.58 1.3E-05 41.3 12.1 90 5-98 6-95 (160)
271 KOG1070|consensus 94.9 1.1 2.4E-05 51.3 16.6 138 2-151 1451-1592(1710)
272 PF04184 ST7: ST7 protein; In 94.7 0.68 1.5E-05 47.7 13.6 118 15-136 174-316 (539)
273 KOG1585|consensus 94.7 4.1 8.9E-05 38.6 21.1 117 9-126 31-158 (308)
274 KOG1585|consensus 94.6 1.1 2.4E-05 42.3 13.5 139 41-185 25-179 (308)
275 PF02259 FAT: FAT domain; Int 94.6 0.51 1.1E-05 46.2 12.2 106 8-113 183-341 (352)
276 KOG3364|consensus 94.5 0.42 9E-06 41.0 9.7 76 9-86 32-110 (149)
277 PF05843 Suf: Suppressor of fo 94.5 0.8 1.7E-05 44.2 13.2 107 7-117 33-143 (280)
278 PF14561 TPR_20: Tetratricopep 94.3 0.52 1.1E-05 37.5 9.3 67 28-98 7-75 (90)
279 PF13374 TPR_10: Tetratricopep 94.2 0.11 2.5E-06 33.9 4.7 29 48-76 3-31 (42)
280 COG0790 FOG: TPR repeat, SEL1 93.9 1.5 3.2E-05 42.0 13.8 105 8-122 108-230 (292)
281 PF12862 Apc5: Anaphase-promot 93.9 0.28 6E-06 39.2 7.2 59 18-76 7-70 (94)
282 PF08631 SPO22: Meiosis protei 93.7 6.9 0.00015 37.6 20.3 104 9-112 35-152 (278)
283 KOG1550|consensus 93.7 0.95 2.1E-05 48.1 12.9 106 11-126 290-407 (552)
284 KOG2471|consensus 93.7 0.1 2.3E-06 53.3 5.2 83 11-93 285-381 (696)
285 COG3629 DnrI DNA-binding trans 93.6 1.3 2.8E-05 42.8 12.4 65 46-110 152-216 (280)
286 cd00020 ARM Armadillo/beta-cat 93.5 0.097 2.1E-06 42.5 4.1 114 212-335 5-119 (120)
287 PF05804 KAP: Kinesin-associat 93.4 14 0.00031 40.4 25.6 154 173-339 280-444 (708)
288 PLN03200 cellulose synthase-in 93.3 1.3 2.9E-05 53.3 14.2 202 181-399 607-824 (2102)
289 PF13374 TPR_10: Tetratricopep 93.3 0.21 4.5E-06 32.6 4.7 30 81-110 2-31 (42)
290 KOG3617|consensus 93.2 16 0.00035 40.3 20.8 92 45-136 856-988 (1416)
291 KOG4814|consensus 93.1 0.91 2E-05 48.1 11.1 79 47-125 354-438 (872)
292 COG2976 Uncharacterized protei 93.0 6.4 0.00014 36.0 15.0 86 49-136 91-180 (207)
293 PF12862 Apc5: Anaphase-promot 92.8 0.54 1.2E-05 37.5 7.3 58 55-112 6-72 (94)
294 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.18 3.8E-06 33.5 3.6 29 82-110 2-30 (38)
295 COG3914 Spy Predicted O-linked 92.6 2 4.2E-05 45.2 12.6 106 15-124 73-185 (620)
296 KOG1550|consensus 92.4 3.2 6.9E-05 44.2 14.6 136 8-153 243-394 (552)
297 TIGR02561 HrpB1_HrpK type III 92.4 2.2 4.8E-05 37.2 10.9 87 7-97 8-94 (153)
298 COG3898 Uncharacterized membra 92.4 14 0.0003 37.5 18.4 96 10-109 121-216 (531)
299 KOG0530|consensus 92.3 4.8 0.0001 38.5 13.7 108 21-132 55-164 (318)
300 PF04910 Tcf25: Transcriptiona 92.0 1.2 2.6E-05 44.7 10.2 77 44-120 37-143 (360)
301 PF09613 HrpB1_HrpK: Bacterial 91.9 7 0.00015 34.6 13.5 86 46-131 9-94 (160)
302 COG2912 Uncharacterized conser 91.8 1.1 2.4E-05 42.8 9.2 75 12-90 184-258 (269)
303 COG3898 Uncharacterized membra 91.7 8.2 0.00018 39.0 15.1 105 15-121 194-302 (531)
304 PF09986 DUF2225: Uncharacteri 91.2 2.9 6.4E-05 38.8 11.2 82 8-89 117-208 (214)
305 COG3914 Spy Predicted O-linked 91.1 5 0.00011 42.3 13.7 111 21-134 42-154 (620)
306 PRK15180 Vi polysaccharide bio 91.1 3.2 6.9E-05 42.8 11.9 102 16-121 296-397 (831)
307 PF04910 Tcf25: Transcriptiona 91.0 7 0.00015 39.3 14.5 108 2-109 33-167 (360)
308 PRK09687 putative lyase; Provi 91.0 3 6.4E-05 40.4 11.5 31 302-334 156-186 (280)
309 PF04781 DUF627: Protein of un 90.7 3.6 7.7E-05 34.1 9.9 71 53-123 2-86 (111)
310 PF08631 SPO22: Meiosis protei 90.6 13 0.00027 35.8 15.5 100 19-118 3-124 (278)
311 PF07079 DUF1347: Protein of u 90.6 5.2 0.00011 41.0 12.9 52 54-106 469-520 (549)
312 KOG1310|consensus 90.6 1.4 3E-05 45.8 8.9 90 47-136 374-466 (758)
313 COG0484 DnaJ DnaJ-class molecu 89.9 0.52 1.1E-05 47.2 5.2 61 143-208 4-70 (371)
314 PLN03200 cellulose synthase-in 89.8 6.5 0.00014 47.7 14.8 178 156-339 29-221 (2102)
315 KOG1839|consensus 89.7 9.5 0.00021 43.8 15.2 148 3-151 967-1134(1236)
316 PF10516 SHNi-TPR: SHNi-TPR; 89.6 0.58 1.3E-05 31.0 3.6 30 48-77 2-31 (38)
317 PF10373 EST1_DNA_bind: Est1 D 89.5 1.1 2.5E-05 42.3 7.2 62 66-127 1-62 (278)
318 KOG4224|consensus 89.4 5 0.00011 40.1 11.4 175 153-339 178-366 (550)
319 PF13281 DUF4071: Domain of un 89.2 4 8.7E-05 41.1 10.9 98 15-114 147-259 (374)
320 PF13646 HEAT_2: HEAT repeats; 89.2 1.5 3.3E-05 33.6 6.5 72 217-317 2-74 (88)
321 PF08424 NRDE-2: NRDE-2, neces 89.2 10 0.00022 37.4 13.8 79 2-84 12-102 (321)
322 COG5191 Uncharacterized conser 89.1 0.89 1.9E-05 44.3 5.9 83 45-127 105-188 (435)
323 COG3947 Response regulator con 89.0 1.7 3.7E-05 42.0 7.7 67 82-148 280-346 (361)
324 PF10373 EST1_DNA_bind: Est1 D 88.8 1.5 3.3E-05 41.5 7.5 62 28-93 1-62 (278)
325 KOG1914|consensus 88.7 25 0.00054 37.1 16.2 158 2-165 13-180 (656)
326 KOG0530|consensus 88.5 4.3 9.3E-05 38.8 9.9 114 2-119 70-185 (318)
327 KOG2300|consensus 88.4 12 0.00027 38.7 13.7 99 8-111 366-475 (629)
328 KOG2047|consensus 88.3 18 0.00039 38.8 15.1 104 3-108 343-452 (835)
329 COG3947 Response regulator con 88.3 2.5 5.4E-05 41.0 8.3 62 46-107 278-339 (361)
330 KOG1077|consensus 88.3 9.5 0.00021 41.2 13.2 116 210-335 325-473 (938)
331 PF08424 NRDE-2: NRDE-2, neces 88.2 28 0.0006 34.2 17.5 91 30-124 6-108 (321)
332 COG0790 FOG: TPR repeat, SEL1 88.1 7.4 0.00016 37.2 11.9 46 25-76 93-142 (292)
333 PF07720 TPR_3: Tetratricopept 87.6 1.9 4.1E-05 28.1 5.0 31 83-113 3-35 (36)
334 PRK09687 putative lyase; Provi 87.6 28 0.00061 33.6 24.4 239 28-322 24-269 (280)
335 KOG0686|consensus 87.5 3.5 7.6E-05 41.6 9.1 97 10-107 151-255 (466)
336 KOG2062|consensus 87.2 9.5 0.0002 41.4 12.5 94 212-332 517-614 (929)
337 PRK13800 putative oxidoreducta 87.2 58 0.0013 36.9 21.5 138 153-334 725-865 (897)
338 PF11207 DUF2989: Protein of u 87.1 2.5 5.5E-05 38.7 7.3 75 23-102 121-199 (203)
339 PF07721 TPR_4: Tetratricopept 86.8 0.84 1.8E-05 27.2 2.8 24 82-105 2-25 (26)
340 KOG2041|consensus 86.7 17 0.00038 39.3 14.0 47 303-352 1055-1109(1189)
341 PF04826 Arm_2: Armadillo-like 86.3 10 0.00022 36.2 11.3 117 210-339 49-166 (254)
342 PF10602 RPN7: 26S proteasome 85.1 20 0.00043 32.1 12.1 65 46-110 35-102 (177)
343 PF10255 Paf67: RNA polymerase 85.0 7 0.00015 39.8 10.0 109 13-122 126-242 (404)
344 PF07720 TPR_3: Tetratricopept 84.7 3.3 7.2E-05 27.0 5.0 31 49-79 3-35 (36)
345 PF13646 HEAT_2: HEAT repeats; 84.3 8.5 0.00018 29.3 8.3 58 214-288 31-88 (88)
346 PRK15180 Vi polysaccharide bio 83.7 2.2 4.7E-05 44.0 5.7 107 4-114 318-424 (831)
347 TIGR02561 HrpB1_HrpK type III 83.5 9.4 0.0002 33.4 8.7 84 48-131 11-94 (153)
348 KOG0529|consensus 83.4 44 0.00096 34.0 14.6 104 20-127 39-157 (421)
349 KOG1464|consensus 83.4 34 0.00074 33.1 13.1 52 59-110 39-94 (440)
350 PF07079 DUF1347: Protein of u 82.7 8.7 0.00019 39.5 9.4 59 9-72 462-520 (549)
351 KOG2422|consensus 82.4 41 0.00088 35.7 14.2 106 22-127 251-389 (665)
352 PF11207 DUF2989: Protein of u 82.3 11 0.00024 34.6 9.2 69 64-134 123-197 (203)
353 PF10579 Rapsyn_N: Rapsyn N-te 82.1 13 0.00028 28.9 8.1 62 49-110 8-72 (80)
354 COG4941 Predicted RNA polymera 81.9 7.2 0.00016 38.6 8.2 98 22-124 309-408 (415)
355 PF14863 Alkyl_sulf_dimr: Alky 81.7 4.9 0.00011 34.8 6.4 51 81-131 70-120 (141)
356 PF15015 NYD-SP12_N: Spermatog 81.7 24 0.00051 36.1 11.9 85 52-136 181-283 (569)
357 PF07721 TPR_4: Tetratricopept 81.2 2 4.4E-05 25.5 2.8 23 49-71 3-25 (26)
358 COG4455 ImpE Protein of avirul 80.8 15 0.00032 34.4 9.4 68 55-122 9-76 (273)
359 TIGR03504 FimV_Cterm FimV C-te 80.8 4.7 0.0001 27.6 4.8 25 85-109 3-27 (44)
360 cd02682 MIT_AAA_Arch MIT: doma 80.8 7.9 0.00017 29.7 6.5 10 60-69 19-28 (75)
361 PF12968 DUF3856: Domain of Un 80.2 16 0.00034 30.9 8.5 66 11-76 57-129 (144)
362 cd02682 MIT_AAA_Arch MIT: doma 80.0 4 8.6E-05 31.4 4.7 31 8-38 5-35 (75)
363 KOG1839|consensus 79.7 23 0.00049 40.9 12.3 129 7-136 930-1078(1236)
364 KOG0529|consensus 79.7 23 0.00049 36.0 11.1 102 22-127 88-195 (421)
365 KOG0890|consensus 79.4 1.7E+02 0.0037 36.3 22.8 118 5-128 1666-1802(2382)
366 PF09670 Cas_Cas02710: CRISPR- 79.4 56 0.0012 33.0 14.2 66 10-77 132-199 (379)
367 PF11817 Foie-gras_1: Foie gra 78.9 11 0.00023 35.7 8.4 63 45-107 176-244 (247)
368 KOG0889|consensus 78.8 98 0.0021 39.7 17.7 111 9-119 2736-2850(3550)
369 PF10255 Paf67: RNA polymerase 78.3 3.6 7.7E-05 41.9 5.1 58 52-109 127-192 (404)
370 COG3629 DnrI DNA-binding trans 78.2 11 0.00024 36.4 8.3 64 9-76 153-216 (280)
371 COG5191 Uncharacterized conser 78.1 3.2 7E-05 40.6 4.5 77 5-85 103-180 (435)
372 PF04212 MIT: MIT (microtubule 77.3 5.9 0.00013 29.5 5.0 31 8-38 4-34 (69)
373 PHA02537 M terminase endonucle 76.3 52 0.0011 30.9 11.9 109 19-128 93-224 (230)
374 PF11817 Foie-gras_1: Foie gra 76.2 34 0.00075 32.2 11.0 50 83-132 180-235 (247)
375 KOG2973|consensus 76.1 11 0.00023 37.0 7.3 106 220-339 9-114 (353)
376 PF14863 Alkyl_sulf_dimr: Alky 75.5 14 0.0003 32.0 7.3 53 47-99 70-122 (141)
377 PF10345 Cohesin_load: Cohesin 75.5 1.2E+02 0.0026 32.7 16.2 95 11-105 303-428 (608)
378 TIGR02710 CRISPR-associated pr 74.5 57 0.0012 33.0 12.4 69 4-72 123-196 (380)
379 KOG2396|consensus 73.8 15 0.00032 38.3 8.0 75 6-84 102-177 (568)
380 COG4649 Uncharacterized protei 73.4 72 0.0016 29.0 12.8 148 13-167 62-214 (221)
381 cd02683 MIT_1 MIT: domain cont 72.2 7.6 0.00016 29.9 4.5 31 8-38 5-35 (77)
382 KOG0713|consensus 72.2 8.9 0.00019 37.7 5.9 59 143-206 16-80 (336)
383 KOG0546|consensus 72.1 2.7 5.9E-05 41.6 2.4 83 11-97 277-359 (372)
384 cd02681 MIT_calpain7_1 MIT: do 71.7 8.8 0.00019 29.5 4.7 30 9-38 6-35 (76)
385 cd02681 MIT_calpain7_1 MIT: do 70.7 8.5 0.00018 29.6 4.4 17 59-75 18-34 (76)
386 KOG2581|consensus 70.7 64 0.0014 32.9 11.5 104 11-114 171-280 (493)
387 cd02678 MIT_VPS4 MIT: domain c 70.7 9.4 0.0002 29.0 4.7 32 8-39 5-36 (75)
388 PRK14288 chaperone protein Dna 70.5 9.3 0.0002 38.5 5.9 59 144-207 4-68 (369)
389 PF12719 Cnd3: Nuclear condens 69.8 20 0.00044 34.7 8.0 93 214-313 64-160 (298)
390 PRK14296 chaperone protein Dna 69.3 8.8 0.00019 38.7 5.5 57 144-205 5-66 (372)
391 cd02680 MIT_calpain7_2 MIT: do 69.1 8.4 0.00018 29.6 4.0 32 8-39 5-36 (75)
392 PF06957 COPI_C: Coatomer (COP 68.9 19 0.0004 37.0 7.6 108 7-115 202-334 (422)
393 TIGR03504 FimV_Cterm FimV C-te 68.6 8.8 0.00019 26.2 3.6 25 51-75 3-27 (44)
394 PF00514 Arm: Armadillo/beta-c 67.3 3.1 6.7E-05 27.4 1.2 40 294-336 2-41 (41)
395 cd02680 MIT_calpain7_2 MIT: do 67.2 11 0.00025 28.9 4.4 15 95-109 20-34 (75)
396 PF10345 Cohesin_load: Cohesin 67.2 1.9E+02 0.004 31.2 20.4 112 8-121 58-181 (608)
397 KOG0166|consensus 67.1 1.7E+02 0.0038 30.8 17.2 148 183-347 85-237 (514)
398 smart00745 MIT Microtubule Int 66.8 13 0.00028 28.2 4.7 31 8-38 7-37 (77)
399 cd00020 ARM Armadillo/beta-cat 65.0 13 0.00028 29.6 4.8 61 276-339 20-81 (120)
400 PF11846 DUF3366: Domain of un 64.4 26 0.00057 31.5 7.1 49 63-112 127-175 (193)
401 PF04053 Coatomer_WDAD: Coatom 64.2 1.8E+02 0.0038 30.2 13.9 48 17-68 269-316 (443)
402 cd02656 MIT MIT: domain contai 64.0 16 0.00034 27.6 4.7 32 8-39 5-36 (75)
403 smart00386 HAT HAT (Half-A-TPR 64.0 18 0.0004 21.4 4.3 25 63-87 3-27 (33)
404 PRK13800 putative oxidoreducta 63.9 1.9E+02 0.0041 32.8 15.2 26 217-242 687-712 (897)
405 COG1747 Uncharacterized N-term 63.7 2E+02 0.0044 30.4 17.3 84 44-129 63-146 (711)
406 smart00386 HAT HAT (Half-A-TPR 63.4 18 0.00039 21.4 4.2 30 95-124 1-30 (33)
407 COG4649 Uncharacterized protei 62.1 1.3E+02 0.0027 27.5 15.3 98 11-109 96-195 (221)
408 COG2909 MalT ATP-dependent tra 60.7 2.8E+02 0.0062 31.1 20.9 93 13-106 462-564 (894)
409 KOG1914|consensus 60.3 48 0.001 35.0 8.7 72 33-109 10-81 (656)
410 PF01239 PPTA: Protein prenylt 60.0 29 0.00063 21.2 4.6 29 66-94 2-30 (31)
411 KOG2300|consensus 59.8 2.3E+02 0.005 29.8 19.6 99 13-114 327-434 (629)
412 KOG1463|consensus 59.4 1E+02 0.0022 30.8 10.3 116 13-131 213-334 (411)
413 cd02684 MIT_2 MIT: domain cont 59.3 19 0.00042 27.4 4.5 32 8-39 5-36 (75)
414 PF15469 Sec5: Exocyst complex 59.2 59 0.0013 28.9 8.4 74 92-171 97-170 (182)
415 PRK14276 chaperone protein Dna 59.1 18 0.00039 36.6 5.5 59 144-207 5-68 (380)
416 COG2909 MalT ATP-dependent tra 58.8 3.1E+02 0.0067 30.9 19.4 102 10-111 416-527 (894)
417 PRK14279 chaperone protein Dna 58.7 20 0.00043 36.5 5.7 60 143-207 9-74 (392)
418 PTZ00037 DnaJ_C chaperone prot 58.4 21 0.00046 36.7 5.9 60 143-207 28-89 (421)
419 cd02679 MIT_spastin MIT: domai 58.2 20 0.00042 27.9 4.3 16 62-77 4-19 (79)
420 PF04053 Coatomer_WDAD: Coatom 57.9 50 0.0011 34.2 8.6 81 14-103 323-411 (443)
421 PRK14286 chaperone protein Dna 57.1 22 0.00048 35.8 5.8 58 144-206 5-68 (372)
422 PTZ00429 beta-adaptin; Provisi 57.0 3.1E+02 0.0068 30.4 15.6 173 153-351 43-223 (746)
423 KOG2114|consensus 56.8 53 0.0012 36.4 8.6 98 9-106 368-515 (933)
424 KOG3783|consensus 56.8 44 0.00096 35.1 7.8 80 4-86 262-341 (546)
425 KOG4563|consensus 56.7 24 0.00052 35.3 5.6 32 8-39 40-71 (400)
426 cd02677 MIT_SNX15 MIT: domain 56.6 21 0.00045 27.3 4.2 30 9-38 6-35 (75)
427 PRK14291 chaperone protein Dna 56.5 23 0.0005 35.8 5.8 59 144-207 4-67 (382)
428 PRK14287 chaperone protein Dna 56.0 24 0.00053 35.5 5.8 59 144-207 5-68 (371)
429 KOG1497|consensus 55.8 2.2E+02 0.0048 28.3 14.4 87 45-132 101-197 (399)
430 cd02678 MIT_VPS4 MIT: domain c 55.8 25 0.00054 26.7 4.6 16 59-74 18-33 (75)
431 TIGR02270 conserved hypothetic 55.7 2.5E+02 0.0053 28.8 18.4 58 216-291 149-206 (410)
432 PF00244 14-3-3: 14-3-3 protei 55.0 33 0.00072 32.2 6.2 49 26-74 143-196 (236)
433 PRK14283 chaperone protein Dna 54.8 24 0.00053 35.6 5.6 58 144-206 6-68 (378)
434 KOG4014|consensus 54.6 90 0.0019 28.6 8.4 84 25-126 128-211 (248)
435 PF10952 DUF2753: Protein of u 54.6 65 0.0014 27.4 7.0 61 10-71 2-74 (140)
436 KOG1258|consensus 54.1 3E+02 0.0066 29.4 18.6 109 6-118 294-403 (577)
437 PF04212 MIT: MIT (microtubule 54.0 86 0.0019 23.0 8.1 23 87-109 11-33 (69)
438 PRK14282 chaperone protein Dna 53.9 24 0.00053 35.5 5.4 56 144-204 5-67 (369)
439 cd02683 MIT_1 MIT: domain cont 53.8 85 0.0018 24.0 7.3 16 93-108 18-33 (77)
440 KOG3783|consensus 52.2 1.5E+02 0.0033 31.2 10.8 69 46-114 448-524 (546)
441 PRK14285 chaperone protein Dna 52.1 26 0.00057 35.2 5.3 57 144-205 4-66 (365)
442 PF12854 PPR_1: PPR repeat 52.0 38 0.00082 21.3 4.3 24 82-105 8-31 (34)
443 COG5107 RNA14 Pre-mRNA 3'-end 51.9 3E+02 0.0066 28.8 15.7 160 2-166 35-205 (660)
444 PF15469 Sec5: Exocyst complex 51.3 1.1E+02 0.0025 27.1 8.9 26 96-121 154-179 (182)
445 KOG2041|consensus 51.2 97 0.0021 33.9 9.3 78 44-133 793-870 (1189)
446 COG4455 ImpE Protein of avirul 51.1 60 0.0013 30.5 6.9 64 15-82 7-70 (273)
447 PF09205 DUF1955: Domain of un 50.7 1.3E+02 0.0029 26.0 8.4 61 50-110 88-149 (161)
448 PRK14280 chaperone protein Dna 50.4 32 0.00069 34.7 5.6 59 144-207 5-68 (376)
449 PRK14277 chaperone protein Dna 50.4 35 0.00076 34.5 6.0 58 144-206 6-69 (386)
450 PRK14284 chaperone protein Dna 49.9 34 0.00074 34.7 5.8 59 144-207 2-66 (391)
451 KOG0292|consensus 49.9 3.3E+02 0.0071 30.8 13.1 111 8-119 990-1122(1202)
452 PF01602 Adaptin_N: Adaptin N 49.2 1.9E+02 0.0041 29.9 11.5 99 215-334 80-179 (526)
453 cd02684 MIT_2 MIT: domain cont 49.2 1.2E+02 0.0025 23.1 8.4 17 93-109 18-34 (75)
454 PF07219 HemY_N: HemY protein 49.0 1E+02 0.0022 25.1 7.5 28 11-38 61-88 (108)
455 PRK13184 pknD serine/threonine 49.0 1.2E+02 0.0026 34.5 10.3 89 24-117 534-627 (932)
456 PRK14294 chaperone protein Dna 48.9 41 0.00089 33.8 6.1 58 144-206 5-68 (366)
457 PF08626 TRAPPC9-Trs120: Trans 48.8 2E+02 0.0043 33.8 12.4 123 9-131 242-461 (1185)
458 PRK14456 ribosomal RNA large s 48.4 54 0.0012 33.1 6.9 111 274-391 219-353 (368)
459 PF10171 DUF2366: Uncharacteri 48.3 28 0.00062 31.2 4.3 82 300-383 24-109 (173)
460 PF00514 Arm: Armadillo/beta-c 48.3 24 0.00052 23.0 3.0 30 212-241 10-39 (41)
461 PRK14298 chaperone protein Dna 48.1 33 0.00072 34.6 5.4 59 144-207 6-69 (377)
462 KOG0985|consensus 47.8 5E+02 0.011 30.1 18.0 91 15-110 1054-1162(1666)
463 PF02064 MAS20: MAS20 protein 47.7 32 0.00068 29.0 4.3 29 13-42 67-95 (121)
464 KOG0985|consensus 47.6 1.3E+02 0.0027 34.6 9.7 106 11-128 1196-1326(1666)
465 cd02677 MIT_SNX15 MIT: domain 47.4 27 0.00059 26.7 3.6 17 93-109 18-34 (75)
466 KOG4014|consensus 47.2 1.6E+02 0.0035 27.0 8.8 73 12-92 71-155 (248)
467 KOG4563|consensus 45.6 36 0.00079 34.1 4.9 56 49-104 43-106 (400)
468 PRK14300 chaperone protein Dna 44.6 42 0.0009 33.8 5.4 58 144-206 4-66 (372)
469 smart00745 MIT Microtubule Int 44.1 89 0.0019 23.4 6.1 16 93-108 20-35 (77)
470 TIGR02349 DnaJ_bact chaperone 43.3 42 0.00092 33.4 5.2 56 145-205 2-62 (354)
471 PRK10767 chaperone protein Dna 43.1 42 0.00091 33.7 5.2 59 144-207 5-69 (371)
472 cd02679 MIT_spastin MIT: domai 42.9 46 0.00099 25.8 4.2 17 23-39 3-19 (79)
473 PF13041 PPR_2: PPR repeat fam 42.7 1E+02 0.0022 20.7 5.8 28 11-38 5-32 (50)
474 PRK14281 chaperone protein Dna 42.6 46 0.00099 33.9 5.4 59 144-207 4-68 (397)
475 PRK14278 chaperone protein Dna 42.4 28 0.00061 35.2 3.8 58 144-206 4-66 (378)
476 KOG0276|consensus 41.7 4.1E+02 0.0089 28.8 12.0 140 24-191 622-771 (794)
477 PF12854 PPR_1: PPR repeat 41.6 57 0.0012 20.5 3.9 27 46-72 6-32 (34)
478 PRK14459 ribosomal RNA large s 41.5 44 0.00095 33.8 5.0 110 275-391 224-359 (373)
479 PRK14299 chaperone protein Dna 41.4 57 0.0012 31.6 5.7 52 144-200 5-61 (291)
480 KOG2160|consensus 41.3 3.8E+02 0.0082 26.8 16.4 156 152-317 93-265 (342)
481 PRK14301 chaperone protein Dna 41.2 50 0.0011 33.3 5.4 59 144-207 5-69 (373)
482 PF05804 KAP: Kinesin-associat 40.2 5.5E+02 0.012 28.4 19.4 112 211-336 287-399 (708)
483 PRK10266 curved DNA-binding pr 40.0 65 0.0014 31.5 5.9 59 144-207 5-68 (306)
484 PRK14297 chaperone protein Dna 39.8 52 0.0011 33.2 5.3 58 144-206 5-68 (380)
485 KOG4459|consensus 39.6 1.4E+02 0.003 30.9 8.1 117 9-125 31-177 (471)
486 KOG2422|consensus 39.5 5.2E+02 0.011 27.8 14.7 103 3-105 278-402 (665)
487 PF13226 DUF4034: Domain of un 39.5 2.5E+02 0.0054 27.2 9.6 113 15-130 6-148 (277)
488 PF04826 Arm_2: Armadillo-like 39.3 3.4E+02 0.0074 25.8 15.6 175 151-339 22-208 (254)
489 PRK11619 lytic murein transgly 38.9 2.5E+02 0.0055 30.6 10.6 57 53-109 318-374 (644)
490 PF04190 DUF410: Protein of un 38.3 3.2E+02 0.0069 26.0 10.2 96 9-105 10-114 (260)
491 PF02064 MAS20: MAS20 protein 38.3 69 0.0015 27.0 4.9 37 85-121 67-103 (121)
492 KOG4331|consensus 37.1 1E+02 0.0023 34.1 7.1 141 249-399 635-793 (865)
493 PF01535 PPR: PPR repeat; Int 37.0 54 0.0012 19.1 3.2 19 54-72 7-25 (31)
494 PRK14289 chaperone protein Dna 36.6 79 0.0017 32.0 6.0 59 144-207 6-70 (386)
495 COG5536 BET4 Protein prenyltra 36.5 1.2E+02 0.0027 29.4 6.8 121 3-127 102-239 (328)
496 PRK14295 chaperone protein Dna 36.3 72 0.0016 32.4 5.7 57 144-205 10-72 (389)
497 PF13041 PPR_2: PPR repeat fam 35.8 1.4E+02 0.0029 20.1 6.0 30 47-76 3-32 (50)
498 COG1747 Uncharacterized N-term 35.7 4.5E+02 0.0098 28.0 11.1 58 57-114 215-292 (711)
499 PF03224 V-ATPase_H_N: V-ATPas 35.4 86 0.0019 30.5 6.0 112 219-339 110-229 (312)
500 PRK14292 chaperone protein Dna 35.4 63 0.0014 32.5 5.1 57 144-205 3-64 (371)
No 1
>KOG4151|consensus
Probab=99.88 E-value=5.3e-22 Score=206.04 Aligned_cols=360 Identities=21% Similarity=0.224 Sum_probs=268.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQ--NQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-~~~~~~~~~~n~a~~y~kl--g~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
..+...+.+||.+|..++|..|.--|..++.+. | ++...+..+.|.+.||+.+ ++|..++..|+-++...|...++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll-p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLL-PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheec-cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 456778999999999999999999999999999 6 4567888999999999865 69999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh-hHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPM-DKRVTA 162 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~a 162 (401)
++.|+.+|..+++++-|+++..-....+|++..+...+.+++..+.....+....+- -+........+. ..+..-
T Consensus 130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~s~~~~~----~~~~~~~vg~~~~~~~~i~ 205 (748)
T KOG4151|consen 130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLASDESEL----PLEAVAPVGASPALIAKIC 205 (748)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCccccccC----ChhhhccccCchHHHHHHH
Confidence 999999999999999999998888899999988888777776665433322210000 000000000000 011111
Q ss_pred HHHHHHhhh-------cchhhHHHhhhhHHHH---------HHHHhh-c--c-----------------------CchhH
Q psy4703 163 VNNLVVLAR-------EMSGAEMLLKSGVAKQ---------INTLLK-C--E-----------------------TNEEI 200 (401)
Q Consensus 163 ~~~L~~l~~-------~~~gae~~~~e~~v~~---------L~~ll~-~--~-----------------------~~~e~ 200 (401)
.+.+..... ...+.+..|.+..+.. +...+. . + ..++.
T Consensus 206 l~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~l~a~~~~~v~~~~~~~~~e~l~~~~l~~~~~~~e~ 285 (748)
T KOG4151|consen 206 LQRLYKSKKTDCVEAFLTKDGERLFKERVFEDPSDLKFKKKSKCKLKAAQEDPVSDTVKVMDKEQLLEEILAVGGSQDEL 285 (748)
T ss_pred HHHHhhhccchhHHhhcCCcHHhhhhhhhccCcccchhhhhhhhhhhhhcCCcccchhhhhhHHHHHHHhhcccccchHH
Confidence 111111110 0111222221111110 000000 0 0 00000
Q ss_pred HhhH--HHHH------HH--HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhh
Q psy4703 201 YLGE--EDFI------TS--IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL 270 (401)
Q Consensus 201 ~lA~--e~fi------~~--i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l 270 (401)
..-+ .-|+ .+ ..+-++.+|+.+|++.++-+++++.+++|+.+..++++....++.+++..+|.+.||.|+
T Consensus 286 ~~~~~~~~~v~~~~i~laql~~~~~~~~lR~ii~~~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~r~~~ 365 (748)
T KOG4151|consen 286 AQVWRTLKLVYGDDIRLAQLPLNCTVKILREIIHSFPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTLRFYV 365 (748)
T ss_pred hhhhhhhhhhhccHHHHHhcchhhchHHHHHHHhcccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHhhhhe
Confidence 0000 1111 22 267889999999999888889999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhh-hhhhHHhhcccCCc------HHHH
Q psy4703 271 VNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNG-TQSDALKDVDKAFD------EFME 343 (401)
Q Consensus 271 ~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~n~~~~~~------~~~~ 343 (401)
+..+.+.+.| |+|+++++||.+++|..+++++..++.....+.+.|+ +. |++.|.++.+. ++|-
T Consensus 366 ve~s~~qd~r--------y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg-~~l~s~a~~~~~~sE~~qel~ 436 (748)
T KOG4151|consen 366 VEVSPEQDPR--------YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELG-MKLYSEAMEEEVTSEKAQELF 436 (748)
T ss_pred eecCccccch--------hhccccchhhhhccccchHHHHHhhhcccccccccHHHHH-HHHHHHHHHhhhhhhhhHHHH
Confidence 9877777767 9999999999999999999999999988845589999 77 99999999988 8999
Q ss_pred HHHhhHhhhhhhhhccCCCccchHHHHHH-HHHHHhcccccee
Q psy4703 344 EVAKLEKEEAEMLETLYQDEKELADFYSL-LSTLVNGSSSVGM 385 (401)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~ 385 (401)
+|++|++||+ | +.||+|.-+++.. +++++.-|++.+.
T Consensus 437 ~la~~a~qev--~---~~~~~n~~~v~~~r~rk~~~~~~~~~~ 474 (748)
T KOG4151|consen 437 DLAAFAFQEV--A---ALSPLNWGNVHMSRARKRLSLDEDPSC 474 (748)
T ss_pred HHHHHHHhhh--h---hccccccchHHHHHHHHhhccCcchhh
Confidence 9999999999 8 8899999999999 9999999988765
No 2
>KOG0553|consensus
Probab=99.83 E-value=2.9e-20 Score=175.04 Aligned_cols=122 Identities=32% Similarity=0.437 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
...++.++.+||.+.+.++|.+|+..|++||+++ |+ ++++|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence 4568999999999999999999999999999999 77 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
|+|.+|..+|+|++|+..|+++|+++|+|...+..|..+...+.+.
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999888887776665543
No 3
>KOG0550|consensus
Probab=99.77 E-value=1.6e-17 Score=161.63 Aligned_cols=222 Identities=26% Similarity=0.297 Sum_probs=171.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.|+..+.+++.||.+|+.|+|..|-++|++||.++ |+ ...++.+|.|||.+..++|+..+|+.+|++|+.+||...+|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 46678889999999999999999999999999999 64 45688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 162 (401)
|.++|.||+.+++|++|+++|++|++.+.+ ..+...++++...+++. +-++.|+++.. ...+...+.++
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS---------kRkd~ykilGi~~~as~~eikka 393 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS---------KRKDWYKILGISRNASDDEIKKA 393 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh---------hhhhHHHHhhhhhhcccchhhhH
Confidence 999999999999999999999999999877 88888888888777663 33457888877 67778889999
Q ss_pred HHHHHHhhhcch------hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHHHhcHHHHHHHHc--CCChhHHHHH
Q psy4703 163 VNNLVVLAREMS------GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKRLYM--SKNENIRVRA 234 (401)
Q Consensus 163 ~~~L~~l~~~~~------gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~~~gv~~Lk~l~~--s~~d~i~~ra 234 (401)
++.+.+.+|++. .+|..|++.| ....++. +++- +....-|.++=..--. -=++.-+.||
T Consensus 394 yrk~AL~~Hpd~~agsq~eaE~kFkevg--eAy~il~---d~~k--------r~r~dsg~dle~~~~~~a~~dp~~~~~a 460 (486)
T KOG0550|consen 394 YRKLALVHHPDKNAGSQKEAEAKFKEVG--EAYTILS---DPMK--------RVRFDSGQDLEEVGSGGAGFDPFNIFRA 460 (486)
T ss_pred HHHHHHHhCCCcCcchhHHHHHHHHHHH--HHHHHhc---CHHH--------HhhcccccchhhhcCCCcCcChhhhhhh
Confidence 999999999863 4566666633 3444444 4544 3333444332222111 0122334466
Q ss_pred HHhhhhccccCCCCCC
Q psy4703 235 LVGLCKLGSMGGSDAS 250 (401)
Q Consensus 235 lvgLckl~~~gg~d~~ 250 (401)
.-.+..++..||.+.+
T Consensus 461 ~qa~~~f~f~gg~~~n 476 (486)
T KOG0550|consen 461 FQALVQFGFPGGFSEN 476 (486)
T ss_pred cccceEEeccCCCCCC
Confidence 6566666665555444
No 4
>KOG0543|consensus
Probab=99.75 E-value=2.8e-17 Score=160.61 Aligned_cols=137 Identities=33% Similarity=0.528 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL 74 (401)
..+...++.||.+|+.|+|..|+..|++|+..- +. ......++.|+|.||+++++|.+|+..|+++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356778999999999999999999999999876 31 13466789999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
+++|+|++|+||+|+|+..+|+|+.|+.+|+++++++|+|..+...|.++....++..... .+||..++.
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke-------kk~y~~mF~ 354 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE-------KKMYANMFA 354 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999888877765433 346666666
No 5
>KOG4234|consensus
Probab=99.74 E-value=3.2e-17 Score=146.18 Aligned_cols=131 Identities=37% Similarity=0.577 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
...+..++..||.+|+.|+|.+|...|+.||.++||. ......+|.|+|.|+++++.++.||.+|+++|+++|.+.+|+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 3457789999999999999999999999999999422 246789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.|||.+|.++..|++|+.+|++.++++|...++...+.++-..+.++....+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888777655443
No 6
>KOG0548|consensus
Probab=99.74 E-value=3.9e-17 Score=163.52 Aligned_cols=177 Identities=24% Similarity=0.345 Sum_probs=142.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+|..++..+..||.+|+.|+|..|+.+|++||..+ |+ ++.+|.|||.||.+++.|..|+.+|+.+|+++|+++++
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~---Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE---DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 467888999999999999999999999999999999 77 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH--HH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKR--VT 161 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 161 (401)
|+|.|.++..+.+|+.|.+.|++++++||++.++...+.++...+.... .-..++++....|. ...+ -.
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~--------~~ee~~~r~~~dpe-v~~il~d~ 499 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE--------TPEETKRRAMADPE-VQAILQDP 499 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC--------CHHHHHHhhccCHH-HHHHHcCH
Confidence 9999999999999999999999999999999999999999888652111 11123333333221 1111 23
Q ss_pred HHHHHHHhhhcchhhHHHhhhhH-HHHHHHHhh
Q psy4703 162 AVNNLVVLAREMSGAEMLLKSGV-AKQINTLLK 193 (401)
Q Consensus 162 a~~~L~~l~~~~~gae~~~~e~~-v~~L~~ll~ 193 (401)
++++.+.+++.+++....+.+.+ +..|..+++
T Consensus 500 ~m~~~l~q~q~~pa~~~~~~n~~v~~ki~~l~~ 532 (539)
T KOG0548|consen 500 AMRQILEQMQENPALQEHLKNPMVMQKIEKLIS 532 (539)
T ss_pred HHHHHHHHHHhCHHHHHHHhccHHHHHHHHHHH
Confidence 56677777777776655555544 556666655
No 7
>KOG1126|consensus
Probab=99.68 E-value=1.5e-16 Score=162.68 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=152.0
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
+|..+|..++.|...||.+.-+++++.||.+|.+|++++ |+ ++.+|..+|.-+...++|++|..+|..||.++|.+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PR---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-Cc---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 367889999999999999999999999999999999999 77 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (401)
..|||.+|.+|.++++++.|.-.|++|++++|.|..+...++.++..+++.+++ .++|++++. .+.+.-.+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A--------L~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA--------LQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH--------HHHHHHHHhcCCCCchhH
Confidence 999999999999999999999999999999999999999999999999887544 458999988 77788888
Q ss_pred HHHHHHHHHhhhcchhh
Q psy4703 160 VTAVNNLVVLAREMSGA 176 (401)
Q Consensus 160 ~~a~~~L~~l~~~~~ga 176 (401)
...+..|..+++++++.
T Consensus 561 ~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEAL 577 (638)
T ss_pred HHHHHHHHhhcchHHHH
Confidence 99999999988875544
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.4e-15 Score=132.59 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=111.6
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|+.+|++ +...|..++..|+|++|+.+|.+++.++ |+ +..+|.++|.++..+|+|++|+..|.++++++|+++
T Consensus 20 l~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 20 LSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-PW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4556665 5678999999999999999999999999 76 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~ 129 (401)
.+++++|.++..+|++++|+..|+++++++|+++......+.+...+.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877665543
No 9
>KOG0624|consensus
Probab=99.64 E-value=1.3e-15 Score=145.39 Aligned_cols=190 Identities=21% Similarity=0.229 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
.....+.+......++|.++++.+++.++.+ |. .+.....+.-++.||..-+++.+||+.|+++|.++|+++.++..|
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3445567778889999999999999999999 75 455666777789999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L 166 (401)
|.+|+.-..|++|+.+|++|.+++|+|..+.+.+.+......+.. -.+||+++.. .+.+.+.+.++++.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~---------kRDYYKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG---------KRDYYKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc---------cchHHHHhhhcccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776655432 3568999998 899999999999999
Q ss_pred HHhhhcc--------hhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHHHhcHHHHHH
Q psy4703 167 VVLAREM--------SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQGVDILKR 221 (401)
Q Consensus 167 ~~l~~~~--------~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~~~gv~~Lk~ 221 (401)
+..||++ +.+|+-|.+ +....++++ ||+. +...++|.+.|..
T Consensus 419 AqkWHPDNFqdEeEKKkAEKKFID--IAAAKEVLs---d~Ek--------RrqFDnGeDPLD~ 468 (504)
T KOG0624|consen 419 AQKWHPDNFQDEEEKKKAEKKFID--IAAAKEVLS---DPEK--------RRQFDNGEDPLDP 468 (504)
T ss_pred HHhcCCccccCHHHHHHHHHhhhh--HHHHHHhhc---CHHH--------HhhccCCCCCCCh
Confidence 9999984 335666665 555555665 8999 7788899887754
No 10
>KOG0547|consensus
Probab=99.63 E-value=3e-15 Score=148.42 Aligned_cols=124 Identities=35% Similarity=0.575 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
+.+.+++++||.+|++|+|++||.+|++||+++ |+ .+.+|.||+.||..+|+|++.+++|+++|+++|++++|++|
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-PD---EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-CC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 457899999999999999999999999999999 76 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEP-TNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P-~~~~~~~~L~~l~~~~~~~~~a 134 (401)
|+.++..+|++.+|+.|..-..-++. +|..+...+.++....+.....
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~ 237 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAK 237 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875443332 5667777788877776655433
No 11
>KOG4626|consensus
Probab=99.62 E-value=4e-14 Score=143.69 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=124.0
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
++.++|+-+.+|.+.||.+-..+.|++|+.+|.+|+.+. |. .+.++-|+|-+|..+|..+-||..|+++|+++|++
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn---~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN---HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc---chhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence 367899999999999999999999999999999999999 76 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
+.||.++|.++-..|+..+|..+|.+|+.++|+...+..+|+.++..++....+.. +|..++.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~--------ly~~al~ 382 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR--------LYLKALE 382 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH--------HHHHHHh
Confidence 99999999999999999999999999999999999999999999888887755544 5666665
No 12
>KOG0624|consensus
Probab=99.61 E-value=1.1e-13 Score=132.44 Aligned_cols=213 Identities=17% Similarity=0.193 Sum_probs=160.3
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+|.+++...+.|+.++.+|++.+|+..|..|++.+ |+ +..+++.||.+|+.+|+-.-|+.+++++|++.|++.-|
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A 108 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA 108 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-ch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence 467889999999999999999999999999999999 77 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc-CCCC
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV---LSRLFAIVTKRMQENEQL----QNKVHNMFKYVFD-TSAP 155 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~---L~~l~~~~~~~~~a~~~~----~~~~~~~~~~~~~-~~~~ 155 (401)
...||.+++++|++++|..+|..++..+|++....+. +..+.+............ ...+..|...+++ .|-+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999977555444 444433333333222211 1446778888888 7888
Q ss_pred hhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-CchhH--HhhHHHHHHHHHHhcHHHHHHHHcCCChh
Q psy4703 156 MDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-TNEEI--YLGEEDFITSIIKQGVDILKRLYMSKNEN 229 (401)
Q Consensus 156 ~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-~~~e~--~lA~e~fi~~i~~~gv~~Lk~l~~s~~d~ 229 (401)
...+..++.|++..+.+.. ++.+|....+++ .+.+. .++--.|--+-..+.+.-++.|++-++|.
T Consensus 189 a~l~~~Rakc~i~~~e~k~---------AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKK---------AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred hHHHHHHHHHHHhcCcHHH---------HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 8999999999998887633 233444443332 22332 22211222333445566666777655553
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.60 E-value=2.3e-14 Score=143.05 Aligned_cols=117 Identities=20% Similarity=0.359 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~ 89 (401)
..++.+|+.+|..|+|++|+.+|++||+++ |+ +..+|+++|.+|+++|+|++|+.++++++.++|+++.+|+++|.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLD-PN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 457889999999999999999999999999 77 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703 90 AYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (401)
Q Consensus 90 a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~ 130 (401)
+|..+|+|++|+..|+++++++|+++.+...++.+...+..
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888776643
No 14
>KOG4648|consensus
Probab=99.59 E-value=3.1e-15 Score=142.90 Aligned_cols=115 Identities=36% Similarity=0.502 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
.+..++++||.||++|.|++||.||.+++.++ |. ++.++.|||.+|+++++|..|..+|+.|+.+|..+.+||-||
T Consensus 96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVY-PH---NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred hhHHHHHhhhhhhhccchhHHHHHhhhhhccC-CC---CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 34567999999999999999999999999999 76 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~ 126 (401)
|.+...+|...+|.++|+.+|++.|++.+....++++..
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999998777776666544
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.59 E-value=5.3e-14 Score=120.01 Aligned_cols=123 Identities=16% Similarity=0.248 Sum_probs=114.5
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
++..+|+++......|..++..|++++|+..|++++..+ |+ +..++.++|.+++.+|++++|+..++++++++|.+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 367889999999999999999999999999999999999 76 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
+..++.+|.+|..+|++++|+..|+++++++|++........++...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877766555443
No 16
>KOG0548|consensus
Probab=99.57 E-value=1.2e-14 Score=145.87 Aligned_cols=113 Identities=30% Similarity=0.484 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
+..++.+||.+|..|+|+.|+.+|++||.++ |. +..+|.||..||.++|+|++|+.+..+.++++|+++++|.|+|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~-p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~G 77 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLS-PT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKG 77 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccC-CC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhH
Confidence 4567899999999999999999999999999 76 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
.++..+|+|++|+..|.+.|+.+|+|+.....|..+.
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999999998887
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.55 E-value=3.1e-13 Score=144.19 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=133.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
.|..+..+...|..++..|++++|+..|+++++++ |+ ....|.++|.++..+|++++|+.+|+++++++|+++.++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 402 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 57788889999999999999999999999999999 76 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 163 (401)
+.+|.++..+|++++|+.+|+++++++|++..++..++.++...++..++.. +|+.+.. .|..........
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~--------~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA--------TFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999998888888888777755444 5666666 455555555555
Q ss_pred HHHHHhhhc
Q psy4703 164 NNLVVLARE 172 (401)
Q Consensus 164 ~~L~~l~~~ 172 (401)
..+..+++.
T Consensus 475 ~~~~~~g~~ 483 (615)
T TIGR00990 475 ELLLDQNKF 483 (615)
T ss_pred HHHHHccCH
Confidence 556665654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=6.5e-13 Score=141.77 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=125.3
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|+.+|.....+...|..++..|+|++|+..|+++++++ |+ ++.+++++|.+|+.+|+|++|+.+|+++++++|++.
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 56788899999999999999999999999999999999 76 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.+++.+|.++..+|++++|+..|+++++.+|+++.++..++.++...++..++.. +|++++.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~--------~~~~Al~ 495 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE--------KFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH--------HHHHHHh
Confidence 9999999999999999999999999999999999999999999888877755544 5666655
No 19
>KOG4626|consensus
Probab=99.53 E-value=1.3e-13 Score=139.91 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=69.5
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|+..|+...++.+.||++-..|+..+|..+|.+|+.++ |+ .+++.+|+|.+|..+|.+++|+..|.++++..|..+
T Consensus 313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~---hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a 388 (966)
T KOG4626|consen 313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN---HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA 388 (966)
T ss_pred HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh
Confidence 44555555556666666555566666666666666655 44 455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
.++.++|.+|.+.|++++|+.+|+.+++++|.-.++..+++..++.+++...+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 55555555555555555555555555555555555555555555544444433
No 20
>KOG0551|consensus
Probab=99.53 E-value=2.2e-13 Score=129.82 Aligned_cols=113 Identities=27% Similarity=0.385 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..|+.+++.||.||+..+|..|+.+|+++|....+++..++.+|.|||+|.+.+|+|..|+.+|++|+.++|.+.++++|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 36889999999999999999999999999998778878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
=|.|++.|.+|.+|..+++..++++-....+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999988887655444433
No 21
>KOG1155|consensus
Probab=99.53 E-value=8.8e-13 Score=130.40 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
.-.-.||-|.-+++++.|+.+|++|++++ |. ...+|..+|.-|+.+++...|++.|++|++++|.|.+|||.+|++
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~---~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PK---YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA 407 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cc---hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence 33456899999999999999999999999 77 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703 91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP 155 (401)
Q Consensus 91 ~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (401)
|.-++...=|+-+|++|+++-|+|+.++..|+.++..+.+..++.+ +|+++......
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK--------Cykrai~~~dt 464 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK--------CYKRAILLGDT 464 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH--------HHHHHHhcccc
Confidence 9999999999999999999999999999999999999988866655 88888874433
No 22
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.52 E-value=4.4e-13 Score=116.95 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=103.0
Q ss_pred cCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 3 DNN-MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 3 ~~~-p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
... ++..+.++..|..++..|++++|...|+-.+.++ |. ++..|+++|.|+..+|+|++|+..|.+++.++|+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 345 7788999999999999999999999999999999 76 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~ 116 (401)
.++++.|.|++.+|+.+.|...|+.++...-.+++
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999999999999999998754443
No 23
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=6.3e-13 Score=122.00 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=107.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY-LKQNQ--NDKVIEDCSKSLEIVP 78 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y-~klg~--y~~Ai~~~~kAL~ldP 78 (401)
++.+|++++.|...|..+...|++++|+..|++++++. |+ +..++.++|.++ ...|+ +++|...++++++.+|
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999999999 77 899999999985 77787 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
+++.+++.+|.+++.+|+|++|+..|+++++++|.+..-...++
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 99999999999999999999999999999999998765555443
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1.5e-12 Score=126.79 Aligned_cols=106 Identities=19% Similarity=0.123 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..+..++++|..+...|++++|+..|+++++++ |+ ++.+|+++|.+|..+|+|++|+..|+++++++|++..++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 137 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALR-PD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN 137 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 447889999999999999999999999999999 77 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~ 116 (401)
+|.++...|++++|+.+|+++++++|+++.
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999973
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.6e-12 Score=137.15 Aligned_cols=163 Identities=10% Similarity=-0.037 Sum_probs=130.8
Q ss_pred ccCChhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFK---------QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~---------~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k 72 (401)
++.+|+.+..+...|..++. .+++++|+..+++|++++ |+ ++.++..+|.++...|++++|+..|++
T Consensus 288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~ 363 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HN---NPQALGLLGLINTIHSEYIVGSLLFKQ 363 (553)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 67899999999998887663 345899999999999999 77 889999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703 73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT 152 (401)
Q Consensus 73 AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (401)
+++++|+++.+++.+|.++..+|++++|+..++++++++|.++.....+..+....++..+ +...++.+...
T Consensus 364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee--------A~~~~~~~l~~ 435 (553)
T PRK12370 364 ANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDD--------AIRLGDELRSQ 435 (553)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHH--------HHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988766555444444444332 33356666652
Q ss_pred --CCChhHHHHHHHHHHHhhhcchhh
Q psy4703 153 --SAPMDKRVTAVNNLVVLAREMSGA 176 (401)
Q Consensus 153 --~~~~~~~~~a~~~L~~l~~~~~ga 176 (401)
|............+..+|+.+++.
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 334444555666667777754433
No 26
>KOG1155|consensus
Probab=99.44 E-value=6.3e-12 Score=124.43 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=127.9
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
++++||+...+|--.|..+....+...|++.|++|++++ |. +..+|+.+|++|--++-+.=|+-+|++|+++.|+|
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~---DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR---DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch---hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 367899999999999999999999999999999999999 76 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQN 140 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~ 140 (401)
+..|.-+|+||.++++.++|+.+|++++.....+..+...|+++++.+++..++...+.+
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999888889999999999999998777664433
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.3e-11 Score=112.33 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..+..+...|..++..|++++|+..|.++++.+ |+ +..++..+|.+|..+|++++|+..+.++++.+|.+..++++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 346788888999999999999999999999888 65 67888889999999999999999999999999988889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~--P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 163 (401)
+|.++...|++++|+..|++++... |........++.++...++...+.. +|..+.. .+.........+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~~~la 176 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK--------YLTRALQIDPQRPESLLELA 176 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCcCChHHHHHHH
Confidence 9999999999999999999988753 3445567777777777777654443 5555555 333344444455
Q ss_pred HHHHHhhhcchh
Q psy4703 164 NNLVVLAREMSG 175 (401)
Q Consensus 164 ~~L~~l~~~~~g 175 (401)
..+...++.+.+
T Consensus 177 ~~~~~~~~~~~A 188 (234)
T TIGR02521 177 ELYYLRGQYKDA 188 (234)
T ss_pred HHHHHcCCHHHH
Confidence 555555555443
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=6.6e-12 Score=132.48 Aligned_cols=131 Identities=10% Similarity=0.052 Sum_probs=120.7
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++.+|+++.++...|..+...|++++|+..|+++++++ |+ ++.+++++|.++...|++++|+..++++++++|.++
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 67899999999999999999999999999999999999 77 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~-P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.+++.++.+++.+|++++|+..+++++... |+++.++..++.++...++..++..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888999999999999999999885 7888888999999888888765544
No 29
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.40 E-value=7.5e-12 Score=103.42 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF 85 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~ 85 (401)
++.++..|..++..|+|++|+..|.+++... |+++....+++.+|.++++.|+|++|+..|++++..+|++ +.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4678999999999999999999999999999 7755567899999999999999999999999999999885 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
.+|.++.++|++++|+..++++++..|+++.+.....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 9999999999999999999999999999987666544
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=7.4e-10 Score=120.39 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=106.9
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++.+|.+...+...|..+...|++++|+..|.+++..+ |. ....+..++.+|...|++++|+..+++++..+|.++
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 601 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ---EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 34567777777777777777788888888887777777 54 556667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (401)
.+++.+|.++...|++++|+..|+++++.+|.++.++..++.++...++..++.. +|+.+.. .|.+.....
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT--------SLKRALELKPDNTEAQI 673 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhcCCCCHHHHH
Confidence 7777777777777777777777777777777777777777777766666544433 4555544 333334444
Q ss_pred HHHHHHHHhhh
Q psy4703 161 TAVNNLVVLAR 171 (401)
Q Consensus 161 ~a~~~L~~l~~ 171 (401)
..+..+...++
T Consensus 674 ~l~~~~~~~~~ 684 (899)
T TIGR02917 674 GLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCC
Confidence 44444444444
No 31
>KOG0545|consensus
Probab=99.40 E-value=4.3e-12 Score=116.70 Aligned_cols=125 Identities=26% Similarity=0.354 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------EES-------HERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------p~~-------~~~~~~~~n~a~~y~klg~y~~Ai~~~~k 72 (401)
+....+..+||.+|+.|+|.+|...|..||..-. |.. .....++.|.+.|++..|+|-++++.|+.
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 4567889999999999999999999999976421 331 34667899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHHHH
Q psy4703 73 SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK-AIQPVLSRLFAIVTKR 131 (401)
Q Consensus 73 AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~-~~~~~L~~l~~~~~~~ 131 (401)
+|..+|.+++|||+||.++...-+..+|..+|+++++++|.-. .+...|..+...+.++
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999753 3444454444444443
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=4.7e-11 Score=108.52 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=121.3
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PD 79 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~ 79 (401)
++.+|.+...+...|..++..|++++|+..|.++++.. |. ...++.++|.+++..|++++|+..+.+++... |.
T Consensus 58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 45678889999999999999999999999999999999 76 77899999999999999999999999999864 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
....++.+|.++...|++++|...|++++..+|++..+...++.++...++..++.. +++.+..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--------~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA--------YLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence 678899999999999999999999999999999998888888888888777654433 5565555
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=4e-11 Score=128.88 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=126.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDK----VIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~----Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
...|..++..|++++|+..|.+++++. |+ +..+++++|.+|..+|++++ |+..|+++++++|+++.++..+|
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~-p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg 291 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARG-LD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYA 291 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 445778889999999999999999999 76 78999999999999999986 89999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV 167 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~ 167 (401)
.++...|++++|+..++++++++|+++.+...++.++...++...+.. .|+.+.. .|............+.
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~--------~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD--------EFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHhCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888755544 5666665 3443333444455666
Q ss_pred Hhhhcchhh
Q psy4703 168 VLAREMSGA 176 (401)
Q Consensus 168 ~l~~~~~ga 176 (401)
..++.+++.
T Consensus 364 ~~G~~deA~ 372 (656)
T PRK15174 364 QAGKTSEAE 372 (656)
T ss_pred HCCCHHHHH
Confidence 777754433
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1.5e-11 Score=107.03 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 29 LDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 29 i~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
...|+++++++ |+ . ++++|.++...|+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|++++
T Consensus 13 ~~~~~~al~~~-p~---~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSVD-PE---T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHcC-HH---H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45799999999 75 2 66799999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703 109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (401)
Q Consensus 109 ~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (401)
+++|+++.++..++.++..+++..++.. .|+.+.. .|.+.+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~--------~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLARE--------AFQTAIKMSYADASWS 129 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCChHHH
Confidence 9999999999999999999998865544 6777777 44444443
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=4.2e-11 Score=111.92 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=107.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK-- 82 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k-- 82 (401)
.+..+..++..|..++..|+|++|+..|++++... |+.+....+++.+|.+|+..|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 45678899999999999999999999999999999 875666788999999999999999999999999999998876
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 83 -ALFRRCQAYEAI--------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 83 -A~~~~a~a~~~l--------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
+++.+|.++..+ |++++|+..|++++..+|++......+..+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 799999999987 899999999999999999997766555433
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=7.1e-10 Score=120.50 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=130.6
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------------------------------CcchHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--------------------------------SHERATC 49 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--------------------------------~~~~~~~ 49 (401)
++.+|.++..+...|..++..|+|++|+..|.++++.. |+ .+....+
T Consensus 49 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 127 (899)
T TIGR02917 49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG-YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAEL 127 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHH
Confidence 45678888899999999999999999999999888776 32 1334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~ 129 (401)
+..+|.+|+..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.+..++..++.++...+
T Consensus 128 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence 78888999999999999999999999999999999999999999999999999999999999988888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh
Q psy4703 130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG 175 (401)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g 175 (401)
+...+. ..|+.+.. .|.+..........+...++.+.+
T Consensus 208 ~~~~A~--------~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 208 NIELAL--------AAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred CHHHHH--------HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 664443 36666666 555566666666666666665443
No 37
>KOG0547|consensus
Probab=99.35 E-value=6e-11 Score=118.23 Aligned_cols=135 Identities=12% Similarity=0.157 Sum_probs=67.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
+|.....|..+|-.|....+-.+-...|.+|..++ |+ ++.+|+.||.+++-+++|++|+.+|+++++++|+++-+|
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~---n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PE---NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CC---CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 33333334444444444444444444444444444 33 444555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
..+|.+.+++++++++...|+.+.+-.|+.+++....+.+....++..++ .++|+.+.+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A--------~k~YD~ai~ 490 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA--------VKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH--------HHHHHHHHh
Confidence 55555555555555555555555555555555555555555444444333 335666666
No 38
>KOG1126|consensus
Probab=99.35 E-value=1.1e-11 Score=127.36 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=63.7
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|+++|..+-+|-..|-.+.....|+.|..+|+.||..+ |+ +..+|+.+|.+|+++++++.|.-.|.+|++++|.+.
T Consensus 448 iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r---hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 448 IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR---HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred hccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch---hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch
Confidence 44444444444455555555555555555555555555 33 444555555555555555555555555555555554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
..+...|.++.++|+.++|+..|++|+.+||.|+-.....+.++..+.+..++
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 44455555555555555555555555555555544444444444444444433
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.33 E-value=3.2e-11 Score=133.83 Aligned_cols=125 Identities=10% Similarity=0.042 Sum_probs=85.2
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++.+|+ +..+...|..+.+.|++++|+..|.+++.++ |+ ++.++.++|.++...|++++|+..|.++++++|+++
T Consensus 603 L~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd---~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 603 LNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE-PN---NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 344564 6666677777777777777777777777777 55 666777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
.+++++|.++..+|++++|+..|+++++++|++..+....+.+.......
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 77777777777777777777777777777777666666665555544433
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.33 E-value=5e-11 Score=132.31 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
+|.....+...+......|++++|+..|.++++++ |+ ..++.++|.++.++|++++|+..|.++++++|+++.++
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34444344444444445577777777777777777 52 55677777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.++|.++..+|++++|+..|+++++++|+++.++..++.++..+++...+.. +|++++.
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~--------~l~~Al~ 705 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH--------YARLVID 705 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHh
Confidence 7777777777777777777777777777777777777777777776644433 5666665
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=9.5e-11 Score=107.29 Aligned_cols=152 Identities=18% Similarity=0.098 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
-+.+...+|..|+..|++..|...+++||+.+ |+ ...+|.-+|..|.+.|+.+.|-+.|++|+.++|++...+.+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 36678899999999999999999999999999 77 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~---~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 163 (401)
|..++..|+|++|...|++|+. +|. -...+++++-+....++...+ ..+|++++. .|.........+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A--------~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQA--------EEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhH--------HHHHHHHHHhCcCCChHHHHHH
Confidence 9999999999999999999987 454 456777888777777776544 448899988 455555556666
Q ss_pred HHHHHhhhc
Q psy4703 164 NNLVVLARE 172 (401)
Q Consensus 164 ~~L~~l~~~ 172 (401)
+.....+++
T Consensus 181 ~~~~~~~~y 189 (250)
T COG3063 181 RLHYKAGDY 189 (250)
T ss_pred HHHHhcccc
Confidence 666665554
No 42
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.32 E-value=5.2e-09 Score=112.68 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=101.6
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
+..+|+++..+...|...+..|++++|+..|++++.++ |+ ++.++..+|.++...|++++|+..|+++++++|+++
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~---~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VC---QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45678888889999999999999999999999999999 76 788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
.++..+|.++..+|++++|+..+++++..+|+++.+...+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999998888899887776554
No 43
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.32 E-value=4.2e-11 Score=107.21 Aligned_cols=111 Identities=30% Similarity=0.466 Sum_probs=99.4
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
..++..+..++..|..+...|++++|+.+|.+++.+. |+.+....++.++|.+|.++|+|++|+..+.+++.++|.+..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3456778889999999999999999999999999998 664445789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q psy4703 83 ALFRRCQAYEAIGK--------------FEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 83 A~~~~a~a~~~lg~--------------~eeA~~~~~kal~l~P~~ 114 (401)
++..+|.++..+|+ +++|++.+++++.++|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999998 677777788888888776
No 44
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.31 E-value=7.2e-11 Score=126.60 Aligned_cols=136 Identities=7% Similarity=-0.015 Sum_probs=126.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.-|+++++++..|......|.+++|...+..+++++ |+ +..++.+++.++.+++++++|+..+++++..+|+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 457789999999999999999999999999999999 77 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
++.+|.++.++|+|++|+..|++++.-+|+++.++..++.+++..++...+.. .|+.+++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~--------~~~~a~~ 216 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD--------VLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence 99999999999999999999999999999999999999999999998876655 5555555
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=7.8e-11 Score=108.12 Aligned_cols=118 Identities=12% Similarity=0.126 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HH
Q psy4703 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY-EAIGK--FE 98 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~-~~lg~--~e 98 (401)
.++.++++..|.++++.+ |+ +...|.++|.+|..+|++++|+..|+++++++|+++.++..+|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 567789999999999999 77 8999999999999999999999999999999999999999999985 78788 59
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
+|...++++++++|++..++..++..+...++..++.. +|+.+++
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~--------~~~~aL~ 172 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE--------LWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH--------HHHHHHh
Confidence 99999999999999999999999999999888865544 7888887
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.1e-11 Score=93.42 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-KFEEAYTDAKHIHRVEP 112 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg-~~eeA~~~~~kal~l~P 112 (401)
++..|.++|.+++..|+|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777777777777777777 67777777777777776
No 47
>KOG4642|consensus
Probab=99.29 E-value=2.9e-11 Score=110.90 Aligned_cols=116 Identities=27% Similarity=0.349 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..++.+++.||.+|....|..||.+|.+||.++ |. .+.+|.|+|.||+++++|+.+..+|.++++++|+.++++|.
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-P~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~f 83 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-PT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYF 83 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcC-CC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence 357899999999999999999999999999999 76 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---C--CCccHHHHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVE---P--TNKAIQPVLSRLFA 126 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~---P--~~~~~~~~L~~l~~ 126 (401)
+|++++....|++|+..++++..+- | .-..+...|..+..
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 9999999999999999999996652 2 22456666665544
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.27 E-value=2.5e-10 Score=130.19 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=109.7
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcch-----------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHER-----------ATCLKNRAAVYLKQNQNDKVIEDC 70 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~-----------~~~~~n~a~~y~klg~y~~Ai~~~ 70 (401)
++.+|+++..+...|..+++.|++++|+.+|+++++++ |+.+.. ......+|.++++.|++++|+..|
T Consensus 296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56789999999999999999999999999999999999 753211 112345688999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (401)
Q Consensus 71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~ 126 (401)
+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..++.
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877777653
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.27 E-value=1.3e-09 Score=124.23 Aligned_cols=125 Identities=15% Similarity=0.197 Sum_probs=98.5
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHH-------------------------------
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCL------------------------------- 50 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~------------------------------- 50 (401)
++.+|+++.++...|..+...|++++|+.+|+++++++ |+ +..++
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~---~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG---NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 45678888888888888999999999999999998888 65 22222
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 51 -----------KNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 51 -----------~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
..+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++.+|+++.+..
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 234555667788889999999999999988888888999999999999999999998888888888777
Q ss_pred HHHHHHHHHHH
Q psy4703 120 VLSRLFAIVTK 130 (401)
Q Consensus 120 ~L~~l~~~~~~ 130 (401)
.++......++
T Consensus 534 a~al~l~~~~~ 544 (1157)
T PRK11447 534 AYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHhCCC
Confidence 66655444333
No 50
>KOG0376|consensus
Probab=99.26 E-value=7.9e-12 Score=124.78 Aligned_cols=120 Identities=28% Similarity=0.424 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
.++.++++++.+|..+.|+.|+..|.+||+++ |+ .+.++.||+.+|++.++|..|+.++.+||+++|...++|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ld-pn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rr 78 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELD-PN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRR 78 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcC-Cc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeec
Confidence 47788999999999999999999999999999 87 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
|.+.+++++|.+|+.+|++...+.|+++.+...+..+.....+.
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888887776664
No 51
>PLN02789 farnesyltranstransferase
Probab=99.26 E-value=1.6e-10 Score=113.55 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=114.2
Q ss_pred CccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQN--DKVIEDCSKSLEIV 77 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y--~~Ai~~~~kAL~ld 77 (401)
+|+.+|++..++..+|..+...| ++++|+.+++++++.+ |+ +..+|.+++.++.+++++ ++++..++++|+++
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pk---nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d 138 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PK---NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD 138 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Cc---chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence 36789999999999999999998 6899999999999999 76 889999999999999874 78899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 78 P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
|.+..+|..||.++..+|+|++|+.++.++++++|+|..++...+.+...+
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999888776554
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=2.3e-10 Score=104.79 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=121.8
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--P 78 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P 78 (401)
+|+.+|+...++.-++..|.+.|+.+.|-+.|++|+.++ |+ +..++.|.|.-+...|+|++|...|++|+..- |
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~---~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~ 136 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PN---NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG 136 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC---ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC
Confidence 367899999999999999999999999999999999999 77 99999999999999999999999999999852 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
..+..+-++|.|-++.|+++.|..+|+++++++|+++.....+.+.+...+++..+..
T Consensus 137 ~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 137 EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 5678999999999999999999999999999999999999999999888888765544
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.25 E-value=1.6e-09 Score=108.47 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=115.6
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
++.+|+++..+...|..++..|++++|+..+++++... +.. .....++.++|.+|...|++++|+..|.++++.+|.+
T Consensus 62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 56678888888888999999999999999988888754 221 1234677888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-----IQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSA 154 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~-----~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 154 (401)
..++..++.++...|++++|+..++++++.+|.+.. ....++.++...++..++.. +|+.+.. .|.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--------~~~~al~~~p~ 212 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA--------LLKKALAADPQ 212 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH--------HHHHHHhHCcC
Confidence 888888888888888888888888888888776543 23345555555555543333 4555544 333
Q ss_pred ChhHHHHHHHHHHHhhhcch
Q psy4703 155 PMDKRVTAVNNLVVLAREMS 174 (401)
Q Consensus 155 ~~~~~~~a~~~L~~l~~~~~ 174 (401)
........+..+...++.+.
T Consensus 213 ~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAA 232 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHH
Confidence 34444444455555555443
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=2.4e-10 Score=111.29 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy4703 22 QGDYETALDFYTKALKVTAE-ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p-~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA 100 (401)
.+..+.++..+.++|... | +++..+..|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788999999999755 3 22346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703 101 YTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT 152 (401)
Q Consensus 101 ~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (401)
+..|+++++++|++..++..++.++...++..++.. .|+.++..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~--------~~~~al~~ 161 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD--------DLLAFYQD 161 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHh
Confidence 999999999999999999999999888877755544 66777663
No 55
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.24 E-value=4.6e-10 Score=112.36 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----KA 83 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-----kA 83 (401)
...+...|..++..|++++|+..|.++++.. |. ...++..++.++.+.|++++|+..+.++++.+|.+. ..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4567778888888888888888888888877 54 677788888888888888888888888888877653 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
+..+|.++...|++++|+..|+++++.+|++..+...++.++...++..++..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56778888888888888888888888888887777788887777777655544
No 56
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=5.1e-11 Score=89.82 Aligned_cols=67 Identities=30% Similarity=0.549 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVP 78 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP 78 (401)
++..+...|..++..|+|++|+.+|+++++++ |+ ++.+++++|.||+.+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999 77 9999999999999999 79999999999999998
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.23 E-value=2.9e-10 Score=106.21 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=113.9
Q ss_pred cCChhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q psy4703 3 DNNMND---YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ--------NQNDKVIEDCS 71 (401)
Q Consensus 3 ~~~p~~---a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl--------g~y~~Ai~~~~ 71 (401)
..+|.+ ..++...|..++..|+|++|+..|+++++.. |+++....+++++|.+++.. |++++|+..++
T Consensus 61 ~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (235)
T TIGR03302 61 SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ 139 (235)
T ss_pred HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 445544 3678999999999999999999999999999 87666667899999999987 88999999999
Q ss_pred HHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHHHH
Q psy4703 72 KSLEIVPDDPKAL-----------------FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVTKR 131 (401)
Q Consensus 72 kAL~ldP~~~kA~-----------------~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~~~ 131 (401)
+++..+|++..++ +.+|..|+..|++++|+..|+++++..|+++ .++..++.++..+++.
T Consensus 140 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 140 ELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 9999999986542 4678999999999999999999999988764 6788888888888887
Q ss_pred HHHHH
Q psy4703 132 MQENE 136 (401)
Q Consensus 132 ~~a~~ 136 (401)
.++..
T Consensus 220 ~~A~~ 224 (235)
T TIGR03302 220 DLAQD 224 (235)
T ss_pred HHHHH
Confidence 55544
No 58
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.22 E-value=1.9e-10 Score=88.20 Aligned_cols=99 Identities=36% Similarity=0.605 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
.+...|..++..|++++|+..++++++.. |. ...++..+|.++...+++++|+..+++++...|.+..+++.+|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 47789999999999999999999999999 76 568899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q psy4703 91 YEAIGKFEEAYTDAKHIHRVEPT 113 (401)
Q Consensus 91 ~~~lg~~eeA~~~~~kal~l~P~ 113 (401)
+...|++++|...++++++.+|.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999998874
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.21 E-value=4.7e-11 Score=93.95 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=75.3
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy4703 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEA 100 (401)
Q Consensus 21 ~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA 100 (401)
.+|+|++|+.+|+++++.+ |..+ +...++++|.||+++|+|++|+..+++ ++.+|.++..++.+|+++.++|+|++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHC-CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999999 7533 677888899999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHH
Q psy4703 101 YTDAKHI 107 (401)
Q Consensus 101 ~~~~~ka 107 (401)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=3.6e-10 Score=96.17 Aligned_cols=110 Identities=9% Similarity=0.070 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 30 ~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
..|.+++..+ |+ +....+.+|.+++..|++++|+..+++++.++|.++.+++++|.++..+|++++|+..|++++.
T Consensus 4 ~~~~~~l~~~-p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGLD-SE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcCC-hh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999 76 7788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 110 VEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 110 l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
++|.++..+..++.++...++..++.. +|+.+..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~--------~~~~al~ 113 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALK--------ALDLAIE 113 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHH--------HHHHHHH
Confidence 999999999999999998888755544 6677766
No 61
>KOG2002|consensus
Probab=99.18 E-value=6.3e-09 Score=110.99 Aligned_cols=126 Identities=22% Similarity=0.233 Sum_probs=117.6
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-P 81 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-~ 81 (401)
..++.++.++...++.+|-.|+|..+...+..++... ...+..+..++++|.+|..+|+|++|..+|.++++.+|++ .
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 4578888999999999999999999999999999987 5556678889999999999999999999999999999988 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~ 129 (401)
-.++++|+.|+..|++++|+.+|+++++..|++.+....|+.++...+
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 889999999999999999999999999999999999999999998875
No 62
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=6.5e-10 Score=98.95 Aligned_cols=107 Identities=24% Similarity=0.266 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..+..+...|..++..|+|++|+..|.+++.+. |++...+.++.++|.+|...|++++|+..|.+++.++|.+..+++.
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 347788999999999999999999999999998 6544466799999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCC
Q psy4703 87 RCQAYE-------AIGKFE-------EAYTDAKHIHRVEPTN 114 (401)
Q Consensus 87 ~a~a~~-------~lg~~e-------eA~~~~~kal~l~P~~ 114 (401)
+|.++. .+|+++ +|+..|++++..+|.+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999 777877 5556666677778765
No 63
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.18 E-value=1.9e-08 Score=110.18 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=114.0
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+|..+..+...|..+...|++++|+..|+++++++ |+ +..++..+|.++...|++++|+..++++++.+|+++.
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~- 118 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN- 118 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence 356778889999999999999999999999999999 76 7888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~ 132 (401)
++.+|.++...|++++|+..|+++++++|+++.+...++.++...+...
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999999999999999999988888776554443
No 64
>KOG1125|consensus
Probab=99.17 E-value=2.3e-10 Score=116.19 Aligned_cols=134 Identities=10% Similarity=0.107 Sum_probs=126.2
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---------------------------------------
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--------------------------------------- 42 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--------------------------------------- 42 (401)
|..+|+++++|..+|......++=..||..+.+|++++ |+
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 67899999999999999999999999999999999999 75
Q ss_pred ---------------------------------Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 43 ---------------------------------SH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 43 ---------------------------------~~--~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
.+ .++.++..+|..|.-.|+|++|+.+|+.||..+|++...|.|+
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 13 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
|.++..-.+.++|+..|++|+++.|+...++.+|+.....++.+.++.+
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999876655
No 65
>KOG0553|consensus
Probab=99.15 E-value=3.8e-10 Score=107.00 Aligned_cols=108 Identities=18% Similarity=0.317 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
.+.-+.+-|.-+++.++|.+|+..|++||+++|.++..|.+||.+|.+||.|+.|+++++.|+.+||....++..|+.++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q psy4703 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT 161 (401)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (401)
..+++...+.. .|+++++..++.+..+.
T Consensus 160 ~~~gk~~~A~~--------aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 160 LALGKYEEAIE--------AYKKALELDPDNESYKS 187 (304)
T ss_pred HccCcHHHHHH--------HHHhhhccCCCcHHHHH
Confidence 99998865544 68999995555544433
No 66
>KOG1125|consensus
Probab=99.14 E-value=1.2e-10 Score=118.21 Aligned_cols=120 Identities=15% Similarity=0.225 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
.+++...-+|..|.-.|+|+.|+.+|+.||+.. |+ +..+|..+|..+-.-.++.+||..|.+|+++.|.++.++|+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-Cc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 567888899999999999999999999999999 87 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC----------ccHHHHHHHHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN----------KAIQPVLSRLFAIVTK 130 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~----------~~~~~~L~~l~~~~~~ 130 (401)
+|.+++.+|.|.+|+.+|-.||.+.+.+ ..++..|+.+...+++
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998762 1366666655544443
No 67
>PRK15331 chaperone protein SicA; Provisional
Probab=99.13 E-value=1e-09 Score=96.38 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
..++.-+..+..|-.++..|+|++|...|+-....+ |. +...+..+|.|+..+++|++|+..|..+..++++++..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 456677889999999999999999999999999999 66 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
.|+.|+||+.+|+.+.|..+|+.+++ .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999999988 4554
No 68
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.13 E-value=2.6e-10 Score=109.77 Aligned_cols=127 Identities=18% Similarity=0.217 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
+.++..+...|..+.+.|++++|+..|+++++++ |+ +..+...++.++...|+++++...+....+..|.++..+.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PD---DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence 4567778888888888888888888888888888 76 7778888888888888888888888877777777878888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.+|.++..+|++++|+..|++++..+|+|+.+...++.++...++..++..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888888888888888888888888888888888888888887765544
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=1.7e-09 Score=100.80 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=116.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+|++...+..+|..++..|+|.+|+..+.++..+. |+ +..+|..+|.+|.+.|++++|-..|.+++++.|+.+..
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~---d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~ 170 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PT---DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI 170 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CC---ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh
Confidence 467777788889999999999999999999999999 66 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
+.++|..|.-.|+++.|...+..+...-+.+..+..+|..+....++...++.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999999999999988888899999999998888887765544
No 70
>KOG0550|consensus
Probab=99.10 E-value=7.9e-10 Score=108.46 Aligned_cols=145 Identities=14% Similarity=0.214 Sum_probs=124.8
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---------HERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---------~~~~~~~~n~a~~y~klg~y~~Ai~~~~k 72 (401)
+.+++.++++++-+|..++-.++.+.|+.+|++++.++ |++ +.....+.++|.-.++.|+|.+|-+.|+.
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 46788999999999999999999999999999999999 763 44556778889999999999999999999
Q ss_pred HHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 73 SLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148 (401)
Q Consensus 73 AL~ldP~~----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~ 148 (401)
+|.+||++ ++.|.+||.+...+|+.++|+.+++.++.+||....+...-++++..+++...+.. .|+.
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~--------d~~~ 346 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE--------DYEK 346 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 99999976 66799999999999999999999999999999987777777888888877755433 4666
Q ss_pred hhcCCCC
Q psy4703 149 VFDTSAP 155 (401)
Q Consensus 149 ~~~~~~~ 155 (401)
++....+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 6664433
No 71
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.10 E-value=2.9e-09 Score=101.80 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=102.8
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q psy4703 9 YNKLKESGNSA-FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKAL 84 (401)
Q Consensus 9 a~~l~~~Gn~~-~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~ 84 (401)
....++.+..+ ++.|+|++|+..|+..++.. |+.+..+.+++.+|.+|+..|+|++|+..|.+++...|++ +.++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 46778888876 67899999999999999999 8867778999999999999999999999999999998874 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
+.+|.++..+|++++|+..|+++++..|++..+.....++
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999987766555443
No 72
>KOG1173|consensus
Probab=99.08 E-value=6.4e-09 Score=105.53 Aligned_cols=225 Identities=13% Similarity=0.122 Sum_probs=172.9
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
+++..|+.+..|+..|--|+.-|++.+|.++|.+|..++ |. .+.+|...|..|.-.++.++|+.+|..|-++-|..
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-cc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 357789999999999999999999999999999999999 66 99999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCChhH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPMDK 158 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (401)
..-.+.+|.=|..++++.-|.+.|..|+.+.|+||-+...++.+....+...++.. +|+.++. .....+.
T Consensus 380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~--------~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK--------YFQKALEVIKSVLNEK 451 (611)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH--------HHHHHHHHhhhccccc
Confidence 88889999999999999999999999999999999999999999988888876655 4554443 1111111
Q ss_pred --HHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-CchhH--HhhHHHHHHHHHHhcHHHHHHHHcCCChhHHHH
Q psy4703 159 --RVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-TNEEI--YLGEEDFITSIIKQGVDILKRLYMSKNENIRVR 233 (401)
Q Consensus 159 --~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-~~~e~--~lA~e~fi~~i~~~gv~~Lk~l~~s~~d~i~~r 233 (401)
......+|.-..|. ..+ .++++....+.+.+. ++.+. .++|-..+.+..+..++.+-+-+--+++.+.++
T Consensus 452 ~~w~p~~~NLGH~~Rk---l~~--~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRK---LNK--YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred cchhHHHHhHHHHHHH---Hhh--HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 11222222221111 111 234455555555532 44444 455666668888889999988777777777777
Q ss_pred HHHhhhhcc
Q psy4703 234 ALVGLCKLG 242 (401)
Q Consensus 234 alvgLckl~ 242 (401)
.+.++|--.
T Consensus 527 ~lL~~aie~ 535 (611)
T KOG1173|consen 527 ELLKLAIED 535 (611)
T ss_pred HHHHHHHHh
Confidence 787776443
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=4.7e-10 Score=83.60 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703 52 NRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK 115 (401)
Q Consensus 52 n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~ 115 (401)
.+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677788888888888888888888888888888888888888888888888888888888764
No 74
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=9.9e-09 Score=100.92 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=121.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.++..+++-..-..+...+++++|+..++++|+++ |+ +..+|..|+.++..++ ++++++..++++++.+|++..+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLN-PG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-ch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 34444554444445677889999999999999999 76 9999999999999999 6899999999999999999999
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703 84 LFRRCQAYEAIGKF--EEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (401)
Q Consensus 84 ~~~~a~a~~~lg~~--eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (401)
|+.|+.++.++|+. ++++..++++++++|+|-.++...+-+...++...++ .+++..++. .+.+.....
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee--------L~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE--------LEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH--------HHHHHHHHHHCCCchhHHH
Confidence 99999999999984 7889999999999999999999999998888776443 336667766 444444444
Q ss_pred HHHH
Q psy4703 161 TAVN 164 (401)
Q Consensus 161 ~a~~ 164 (401)
.+..
T Consensus 181 ~R~~ 184 (320)
T PLN02789 181 QRYF 184 (320)
T ss_pred HHHH
Confidence 4443
No 75
>KOG2076|consensus
Probab=99.07 E-value=9.6e-09 Score=108.94 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
....+..+||.+|.+|++++|.+.+.++|+.+ |. ++.+|+.+|.+|..+|+.++|+...-.|-.++|.+...|.++
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 47788999999999999999999999999999 76 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
+....++|.+++|.-+|.+|++.+|.+-.....-..++..+++..++.. .|..++.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~--------~f~~l~~ 269 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME--------TFLQLLQ 269 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH--------HHHHHHh
Confidence 9999999999999999999999999998888888888888888865544 5666666
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=2.6e-09 Score=102.81 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
+...+......+...|+++++...+.++.... + .+.++.+|..+|.++.+.|++++|+.+++++++++|+++.++..+
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-A-APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34455566677888999999999999977644 2 234788899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNL 166 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L 166 (401)
+.++...|+++++...++......|+|+..+..++.++..+++..++.. +|+.+.. .|.+.......+..|
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~--------~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE--------YLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH--------HHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc--------ccccccccccccccccccccccc
Confidence 9999999999999888888888889999999999999999988755544 7777777 667777777777778
Q ss_pred HHhhhcchhhH
Q psy4703 167 VVLAREMSGAE 177 (401)
Q Consensus 167 ~~l~~~~~gae 177 (401)
...|+.+.+..
T Consensus 259 ~~~g~~~~A~~ 269 (280)
T PF13429_consen 259 EQAGRKDEALR 269 (280)
T ss_dssp T----------
T ss_pred ccccccccccc
Confidence 88777655443
No 77
>KOG1173|consensus
Probab=99.06 E-value=9.1e-10 Score=111.58 Aligned_cols=126 Identities=24% Similarity=0.306 Sum_probs=113.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP 78 (401)
+.+.|.++-.+.+.|..+|..+.|.+|+.+|+.++...+ +..+.....+.|+|.+|.+++.|++||.+++++|.+.|
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999995442 23334677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
.++..|-..|-+|..+|+++.|+..|.++|.++|+|..+...|+.+.+.
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888888755443
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=1e-08 Score=95.73 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=134.3
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
..+|++... ....+.+...|+-+.++.+..++..-. |. +..+..-.|...+..|+|..|+..+.++..++|++++
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~---d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PK---DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cc---cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence 457888888 788889999999999888888877777 54 6667777999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (401)
+|.-+|.+|.++|++++|...|.+++++.|+++.+..+++-.+...+++..+.. ++..+.. .+.+...+..
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~--------lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET--------LLLPAYLSPAADSRVRQN 207 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH--------HHHHHHhCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999888866555 4555555 4446666666
Q ss_pred HHHHHHHhhhcch
Q psy4703 162 AVNNLVVLAREMS 174 (401)
Q Consensus 162 a~~~L~~l~~~~~ 174 (401)
.+..+...++.+.
T Consensus 208 LAl~~~~~g~~~~ 220 (257)
T COG5010 208 LALVVGLQGDFRE 220 (257)
T ss_pred HHHHHhhcCChHH
Confidence 6666666666543
No 79
>KOG2003|consensus
Probab=99.02 E-value=3.5e-09 Score=104.84 Aligned_cols=164 Identities=19% Similarity=0.210 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
+.=++.++-++||..|..|+++.|.+.|.+|+.-+ .. -..+++|+|..+-.+|+.++|+.+|-+.-.+--+++..+
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-as---c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-AS---CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 33457788899999999999999999999999988 43 778999999999999999999999999888878899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH--------------------------HH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE--------------------------QL 138 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~--------------------------~~ 138 (401)
+.++.+|.-+.+..+|++.|-++..+-|++|.+...|+.++...+++.++-. ++
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999988777665432 22
Q ss_pred HHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhhhc
Q psy4703 139 QNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVLARE 172 (401)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~ 172 (401)
..+..++|+++.- .|.........+.|+-..|.+
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 2344555555544 444444445555555555554
No 80
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7e-09 Score=98.87 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=108.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVP 78 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg---~y~~Ai~~~~kAL~ldP 78 (401)
++.||++++.|...|..|+..|++..|...|.+|+++. |+ ++..+..+|.+++... .-.++...+++++.+||
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GD---NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 46799999999999999999999999999999999999 76 8889998998887654 47889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
.++.+++.+|..++..|+|.+|+..++..+...|.+..-...+.+.
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999887666655443
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=7.3e-09 Score=111.29 Aligned_cols=109 Identities=8% Similarity=-0.094 Sum_probs=104.4
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++..|+++.+..+.+..+.+.+++++|+..+++++..+ |+ ++..++++|.++.++|+|++|+..|++++..+|+++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SS---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE 188 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH
Confidence 57889999999999999999999999999999999999 77 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
.++..+|.++..+|+.++|...|+++++....-
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999999999999999886543
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=9.8e-09 Score=89.79 Aligned_cols=92 Identities=8% Similarity=-0.075 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
......+.+|..++..|++++|...|+.++.+||.++..|+++|.++..+|+|++|+..|.+++.++|+|+.....++.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4703 125 FAIVTKRMQENE 136 (401)
Q Consensus 125 ~~~~~~~~~a~~ 136 (401)
+-.+++...+..
T Consensus 113 ~L~lG~~~~A~~ 124 (157)
T PRK15363 113 YLACDNVCYAIK 124 (157)
T ss_pred HHHcCCHHHHHH
Confidence 999999866655
No 83
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=3.4e-08 Score=108.25 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=126.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
+|-+....-.--.++...|++++|+..|.+++..+ |. .+.++.++|.++...|++++|+..|+++++++|.++.++
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34555666677788899999999999999999878 54 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 163 (401)
+.+|.++...|++++|+..++++++.+|++.. +..++.++...++...+.. .|+.++. .|.+.+.....+
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~--------~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR--------AMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999 8899988888777755444 6777777 455544444444
Q ss_pred HHHH
Q psy4703 164 NNLV 167 (401)
Q Consensus 164 ~~L~ 167 (401)
..+.
T Consensus 158 ~~l~ 161 (765)
T PRK10049 158 QALR 161 (765)
T ss_pred HHHH
Confidence 4443
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=2.1e-08 Score=89.21 Aligned_cols=133 Identities=9% Similarity=0.080 Sum_probs=105.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q psy4703 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYE 92 (401)
Q Consensus 16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~ 92 (401)
.+.+|-..+|..+...+...++.. +. .....+++++|.++..+|+|++|+..|.+++.+.|+. +.+++++|.++.
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTT-SG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred ccccccccccccchhhhhHhccCC-ch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 456677777888888887766665 43 3468889999999999999999999999999997763 458999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q psy4703 93 AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT-------KRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 93 ~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.+|++++|+..|++++.++|.+...+..++.++..++ +...+...+ .+...+|+.+..
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~-~~a~~~~~~a~~ 148 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF-DQAAEYWKQAIA 148 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999998888888888444 333333322 334456666665
No 85
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.96 E-value=1.4e-07 Score=86.93 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KA 83 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA 83 (401)
.+++.++..|..++..|+|.+|+..|++.+... |..+....+.+.+|.+|++.|+|.+|+..+++-++..|+++ .+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 357889999999999999999999999999999 88888999999999999999999999999999999999874 58
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 84 LFRRCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 84 ~~~~a~a~~~lg~-----------~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
++.+|.+++.+.+ ..+|+..|+..+...|+++-+.....++
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 9999999877643 4589999999999999997665544433
No 86
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=1.5e-07 Score=89.09 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA 83 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA 83 (401)
.+++.++..|..++..|+|++|+..|++++... |..+....+.+++|.+|++.++|++|+..+++.++.+|++ +.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 367788999999999999999999999999999 8877777888999999999999999999999999999977 567
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 84 LFRRCQAYEAIGK------------------FEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 84 ~~~~a~a~~~lg~------------------~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
+|.+|.++..+++ -.+|+..|++.++..|+++-+...-.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~ 165 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK 165 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 9999999876651 25788999999999999865444433
No 87
>KOG3060|consensus
Probab=98.95 E-value=1.3e-07 Score=87.98 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
|++....+-.|..+-..|+|++|+++|+..++-+ |+ +...+...-.+...+|+.-+||+....-++..+.|..||.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~ 158 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH 158 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777788889999999999999999999999999 76 8888887777788899999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (401)
.++.+|..+|+|+.|.-+|++.+-+.|.++.....++.+..-++..... .....+|.+++...+
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~-----~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL-----ELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999988877764322 235668888888443
No 88
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.93 E-value=3.1e-08 Score=85.22 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KAL 84 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~ 84 (401)
.+..++..|...++.|+|.+|++.|+...... |..+....+...++-+|++.++|++|+..+++-|+++|.++ -|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46789999999999999999999999999999 87788889999999999999999999999999999999885 479
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 85 FRRCQAYEAIGK---------------FEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 85 ~~~a~a~~~lg~---------------~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
|.+|.+++.+.. ...|+.+|++.++..|+++-+...
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 999999999987 899999999999999998765543
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=6.6e-09 Score=77.32 Aligned_cols=65 Identities=23% Similarity=0.446 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
+.+|..++..|+|++|+..|+++++.. |+ +..+++.+|.+++.+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-PD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 357999999999999999999999999 77 999999999999999999999999999999999875
No 90
>KOG1840|consensus
Probab=98.91 E-value=2.3e-07 Score=95.87 Aligned_cols=253 Identities=16% Similarity=0.181 Sum_probs=156.0
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--- 76 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l--- 76 (401)
..|.........|..|+.+|+|+.|+..+.+|+++-. -.++.......++|..|+.+++|.+|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4577777888899999999999999999999999810 012447777778999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCccHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy4703 77 -----VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-----PTNKAIQPVLS---RLFAIVTKRMQENEQLQNKVH 143 (401)
Q Consensus 77 -----dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~-----P~~~~~~~~L~---~l~~~~~~~~~a~~~~~~~~~ 143 (401)
+|.-+.++.++|.+|.+.|+|++|..++++|++|- .+.+.+...+. .+...+.+...+...+ .+..
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~-q~al 352 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL-QKAL 352 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH-HHHH
Confidence 34556789999999999999999999999999873 33444544444 4444444444444422 2222
Q ss_pred HHHHHhhc-CC-CChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhH----HHHH--------H
Q psy4703 144 NMFKYVFD-TS-APMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGE----EDFI--------T 209 (401)
Q Consensus 144 ~~~~~~~~-~~-~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~----e~fi--------~ 209 (401)
..+..++. .+ .....+...+..+...|+++++.+.. + .++....+... ..+..+-+.+ ..+. .
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~-k-~ai~~~~~~~~-~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY-K-KAIQILRELLG-KKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH-H-HHHHHHHhccc-CcChhhhHHHHHHHHHHHHhcccchHH
Confidence 23333333 22 22334455556667777765554443 2 23333333322 1223321111 1111 2
Q ss_pred HHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhh
Q psy4703 210 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL 270 (401)
Q Consensus 210 ~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l 270 (401)
.......+|+ +....+.+.+ .-..-+||++...-|... ...++++.+-+|-
T Consensus 430 ~l~~~~~~i~-~~~g~~~~~~-~~~~~nL~~~Y~~~g~~e--------~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 430 QLFEEAKDIM-KLCGPDHPDV-TYTYLNLAALYRAQGNYE--------AAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHH-HHhCCCCCch-HHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHH
Confidence 2345556677 5555333322 134557777776655332 2456665555443
No 91
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.91 E-value=6.5e-09 Score=79.02 Aligned_cols=69 Identities=25% Similarity=0.528 Sum_probs=56.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 54 a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
..+|++.++|++|+.++++++.++|+++.+++.+|.++..+|+|++|+.+|+++++.+|+++.+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 457788888888888888888888888888888888888888888888888888888888776655544
No 92
>KOG4555|consensus
Probab=98.89 E-value=7.8e-08 Score=81.01 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKA 83 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA 83 (401)
.+..+-.+|..+...|+.+.|++.|.++|.+. |. ++.+|.|+|.++.-.|+-++|+.+.++|+++.... ..+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~-P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLA-PE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhc-cc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 34566778999999999999999999999999 76 99999999999999999999999999999997654 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~ 113 (401)
|..||.+|..+|+-+.|..+|+.+-++-..
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999999999999888644
No 93
>KOG1840|consensus
Probab=98.89 E-value=2.4e-07 Score=95.78 Aligned_cols=192 Identities=21% Similarity=0.289 Sum_probs=136.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--- 77 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--- 77 (401)
+|.-+..+...|..|...++|.+|+..|.+|+.+-. +++|..+.++.|+|..|.+.|+|++|..+|++|+++-
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 455566777899999999999999999999998753 5678899999999999999999999999999999873
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 78 -----PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE-----PTN---KAIQPVLSRLFAIVTKRMQENEQLQNKVHN 144 (401)
Q Consensus 78 -----P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~-----P~~---~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~ 144 (401)
|.-...+...+.++..++++++|+..+++++++- +++ ..+...|+.++..++++.++..-+ +++..
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~-k~ai~ 395 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY-KKAIQ 395 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH-HHHHH
Confidence 3345678899999999999999999999999872 223 456778888888888887776633 33333
Q ss_pred HHHHhhc-CCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhH
Q psy4703 145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEI 200 (401)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~ 200 (401)
+.+.... .......-...+............++++|.+ -..|++.+. ...|++
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~--~~~i~~~~g-~~~~~~ 449 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE--AKDIMKLCG-PDHPDV 449 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH--HHHHHHHhC-CCCCch
Confidence 4444433 1222222233333333334434456666555 222335554 445666
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.87 E-value=1.6e-07 Score=102.82 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=112.0
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
..|..+...+..+...++.|+|+.|+..|.++++.+ |. ++....-++.++...|++++|+..|++++.-+|....+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ 104 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRG 104 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-cc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH
Confidence 568889999999999999999999999999999999 76 43222278888889999999999999999444455555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP 155 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (401)
+...|.++..+|+|++|+..|+++++.+|+++.+...+..++...++..+ +.+.++.+....+.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e--------Al~~l~~l~~~dp~ 168 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV--------VLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH--------HHHHHHHhcccCcc
Confidence 55558899999999999999999999999999988877666666555433 33456666654333
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=7.2e-08 Score=96.79 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
|......+..+...+..|++++|...++..+... |+ ++.++..++.++++.++.++|++.+.+++.++|+.+...+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PD---NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 4566788899999999999999999999999988 77 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
++|++|++.|++.+|+..+++.+.-+|+|+..|..|++.+..++...++..
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 999999999999999999999999999999999999999999888766544
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=4.4e-08 Score=97.96 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~ 129 (401)
+...|..++..|+|++|+..|+++|+++|+++.+|+.+|.+|..+|+|++|+.+++++++++|++..++..++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHH
Q psy4703 130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVT 161 (401)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (401)
+...+.. .|+.++. .|.+......
T Consensus 85 ~~~eA~~--------~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 85 EYQTAKA--------ALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CHHHHHH--------HHHHHHHhCCCCHHHHHH
Confidence 8865544 6777777 4444443333
No 97
>KOG2076|consensus
Probab=98.86 E-value=2e-07 Score=99.10 Aligned_cols=108 Identities=17% Similarity=0.257 Sum_probs=104.4
Q ss_pred CccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 1 MIDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 1 ~i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
+|..+|..+.+|+..|.+|-.+|+.+.++.++..|-.++ |. +...|..++....++|++++|.-+|++||+.+|.+
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK---DYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 367899999999999999999999999999999999999 76 66999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P 112 (401)
.+.+++++..|.++|++..|...|.+++.++|
T Consensus 241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999
No 98
>KOG2002|consensus
Probab=98.86 E-value=1.5e-07 Score=100.62 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=134.7
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++..|+++-.+..++...|.+|+|..|+.+|.+++.++ |. ..+.....+|.|+.++++.+.|+..+++++++||.++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in-p~--~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v 233 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN-PA--CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV 233 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cc--cCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH
Confidence 46789999999999999999999999999999999999 64 3556777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q psy4703 82 KALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDK 158 (401)
Q Consensus 82 kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (401)
.++..+|.+-+... .|..++..+.++..++|.||.+...|+.-+...+++.....-. ..++......+...+.
T Consensus 234 ~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la----~~ai~~t~~~~~~aes 309 (1018)
T KOG2002|consen 234 SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLA----EHAIKNTENKSIKAES 309 (1018)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHH----HHHHHhhhhhHHHHHH
Confidence 99999998877655 4788999999999999999999999999888888775543311 1112222112233344
Q ss_pred HHHHHHHHHHhhhcchhhHHH
Q psy4703 159 RVTAVNNLVVLAREMSGAEML 179 (401)
Q Consensus 159 ~~~a~~~L~~l~~~~~gae~~ 179 (401)
-...+++...+|+++.+-..+
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHH
Confidence 566667777777765443333
No 99
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.86 E-value=5.6e-08 Score=80.01 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHH
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPV 120 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~ 120 (401)
+..++.+|..+++.|+|++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999877 6799999999999999999999999999999986 456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703 121 LSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT 152 (401)
Q Consensus 121 L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (401)
++.++...++...+ ..++..+...
T Consensus 82 ~~~~~~~~~~~~~A--------~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKA--------KATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHH--------HHHHHHHHHH
Confidence 77777766665433 3466666663
No 100
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.85 E-value=8.2e-08 Score=73.29 Aligned_cols=87 Identities=28% Similarity=0.391 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
+++++|.+++..|++++|+..+.++++..|.+..+++.+|.++...|++++|+..|++++.+.|.+..+...++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred HHHHHHH
Q psy4703 129 TKRMQEN 135 (401)
Q Consensus 129 ~~~~~a~ 135 (401)
++...+.
T Consensus 82 ~~~~~a~ 88 (100)
T cd00189 82 GKYEEAL 88 (100)
T ss_pred HhHHHHH
Confidence 7764443
No 101
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=9.2e-08 Score=85.51 Aligned_cols=90 Identities=10% Similarity=0.173 Sum_probs=80.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
+..+.+++++|..+...|++++|+.+|++++++.|+. ..+++.+|.++..+|++++|+..|+++++++|++......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5578889999999999999999999999999987754 5789999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH
Q psy4703 121 LSRLFAIVTKRMQ 133 (401)
Q Consensus 121 L~~l~~~~~~~~~ 133 (401)
++.++...++...
T Consensus 112 lg~~~~~~g~~~~ 124 (172)
T PRK02603 112 IAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHcCChHh
Confidence 8888877665433
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=2.9e-08 Score=86.29 Aligned_cols=131 Identities=19% Similarity=0.156 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKA 83 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA 83 (401)
..+...+......+..+++..+...+++.+.-. |+.+....+.+.+|.+++..|+|++|+..|+.++...|+. ..+
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 346667778888888999999988899999888 7756677888889999999999999999999999987654 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ 139 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~ 139 (401)
.+++|.++..+|+|++|+..++. +.-.+-.+.+...++.++...++..++...+.
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88999999999999999999866 33344456788888999999888888877554
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.82 E-value=3.4e-06 Score=85.85 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-KALFR 86 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-kA~~~ 86 (401)
.+......|...+..|+|+.|.....++.+.. |+ ....+...|.++..+|+++.|..++.++.+..|++. .+...
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHA-AE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA 158 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence 45566788999999999999999999999988 65 566677789999999999999999999999999875 45666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhH----HHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT-SAPMDK----RVT 161 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~----~~~ 161 (401)
++.++...|+++.|...+++.++..|+++.+...++.++...++...+.. .+..+... ..+... ...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~--------~l~~l~k~~~~~~~~~~~l~~~ 230 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD--------IIDNMAKAGLFDDEEFADLEQK 230 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHcCCCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999888865544 45555542 111111 112
Q ss_pred HHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhcc-----CchhHHhhHHHHH--HHHHHhcHHHHHHHHcCCChhHHH--
Q psy4703 162 AVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCE-----TNEEIYLGEEDFI--TSIIKQGVDILKRLYMSKNENIRV-- 232 (401)
Q Consensus 162 a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~-----~~~e~~lA~e~fi--~~i~~~gv~~Lk~l~~s~~d~i~~-- 232 (401)
+...++..+..+ .+...+..+.+.. +++++..++-... .+-.+.....|.+.++..++....
T Consensus 231 a~~~~l~~~~~~---------~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~ 301 (409)
T TIGR00540 231 AEIGLLDEAMAD---------EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL 301 (409)
T ss_pred HHHHHHHHHHHh---------cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence 222222222211 2233333333311 2556655553333 334677788898888854444321
Q ss_pred HHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCc
Q psy4703 233 RALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDP 277 (401)
Q Consensus 233 ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~ 277 (401)
..+...-.+.+ +...++.+.+.+|+.....++
T Consensus 302 ~~l~~~~~l~~-------------~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 302 PLCLPIPRLKP-------------EDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HHHHHhhhcCC-------------CChHHHHHHHHHHHHhCCCCh
Confidence 12222222221 122467788888887544444
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.81 E-value=1.3e-06 Score=88.63 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNR-AAVYLKQNQNDKVIEDCSKSLEIVPDDPKA-LF 85 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~-a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA-~~ 85 (401)
.+......|...+..|+|+.|.....++-+.. + .+.+++.+ +.+..+.|+++.|..++.++.+.+|++..+ ..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~----~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l 157 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHA-E----QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEI 157 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-c----chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45566778888888888888886666544432 1 34454555 444478888888888888888888877543 34
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~ 135 (401)
..+.++...|++++|...+++..+.+|+++.+...+..++...++...+.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 45888888888888888888888888888888888888887777777665
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=1.2e-08 Score=76.34 Aligned_cols=66 Identities=32% Similarity=0.468 Sum_probs=50.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 58 LKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 58 ~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
++.|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567778888888888888888888888888888888888888888888888888877666665554
No 106
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=2.7e-07 Score=101.10 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=115.9
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++.+|.++.........+...|++++|+.++++++ + |. +.....+..+|.+|..+|+|++|++.|+++++.+|+++
T Consensus 61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~-p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--S-SM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--c-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 45677775444477788888999999999999999 4 43 33556666668899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRV 160 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (401)
.+++.++.++...+++++|+..++++...+|.+... ..+..++...+... .+...|+.+++ .|.+.+...
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~--------~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY--------DALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH--------HHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999985544 33333332222221 13445777777 455555555
Q ss_pred HHHHHHHHhh
Q psy4703 161 TAVNNLVVLA 170 (401)
Q Consensus 161 ~a~~~L~~l~ 170 (401)
..+..+...+
T Consensus 208 ~~~~~l~~~~ 217 (822)
T PRK14574 208 NHLEILQRNR 217 (822)
T ss_pred HHHHHHHHcC
Confidence 5555554433
No 107
>KOG1308|consensus
Probab=98.76 E-value=8e-09 Score=99.51 Aligned_cols=117 Identities=27% Similarity=0.442 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..+...+-.+..++..|.+++||+.|+.+|.++ |. .+.+|.+++.+++++++...|+.+|..||+++|+..+.|-.
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~ln-p~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELN-PP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccC-Cc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 346667788889999999999999999999999 76 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
+|.++..+|+|++|..++..+++++-+ ..+-..|..+....
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a 228 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNA 228 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccch
Confidence 999999999999999999999998743 34444444444433
No 108
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.75 E-value=2.2e-07 Score=87.64 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALF 85 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~ 85 (401)
++.+++.+..+++.|+|.+|...|...|+.. |+.+..+.++|.+|.+++.+|+|+.|...|..+++-.|++ +++++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 3558999999999999999999999999999 9888899999999999999999999999999999998876 56799
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
.+|.+...+|+-++|...|+++++-.|+.+.+...-
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999987765543
No 109
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.75 E-value=2.4e-07 Score=78.07 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFR 86 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---~~kA~~~ 86 (401)
+.+++.|..+-..|+.++|+.+|.+++... ...+....++.++|.++..+|++++|+..+++++...|+ +......
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 467899999999999999999999999987 554667889999999999999999999999999999888 7778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
++.++..+|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999877764
No 110
>KOG1174|consensus
Probab=98.74 E-value=3.6e-07 Score=90.03 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=120.4
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH-------------
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE------------- 68 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~------------- 68 (401)
|+.+|.+.+++..+|+.+...|+.++|+..|+.|+.+. |- ....|..+-.||+..|++.+|..
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~---rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PY---RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hh---hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 78899999999999999999999999999999999999 65 78888888899998888888766
Q ss_pred -----------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 69 -----------------------DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 69 -----------------------~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
.++++|.++|.+.+|...+|..+...|++++++..+++.+...|++ ..+..|+.+.
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~ 481 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIM 481 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHH
Confidence 4455666777788888888888888888888888888888777653 4566677666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q psy4703 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR 171 (401)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 171 (401)
....+.+++.. +|.+++..++..+....-++.+-..-.
T Consensus 482 ~A~Ne~Q~am~--------~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 482 RAQNEPQKAME--------YYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHhhhHHHHHH--------HHHHHHhcCccchHHHHHHHHHHhccC
Confidence 66666544433 677787766655555555555444333
No 111
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=4e-06 Score=80.57 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKALF 85 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----~kA~~ 85 (401)
++...|..|...|-++.|...|...++.. .....+.-.+-..|....+|++||+..++...+.|.. +..|.
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 44444555555555555555555444433 3456777788888999999999999999888888755 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hhHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP--MDKRVTAV 163 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 163 (401)
-+|+.+....+++.|...+++|++.+|++..+.-.++++....+++.++.+ .++.+...++. .+.....+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~--------~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE--------ALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH--------HHHHHHHhChHHHHHHHHHHH
Confidence 788888888899999999999999999999999999999888888766554 34555442222 24445667
Q ss_pred HHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHH--HHhcHHHHHHHHcCCChh
Q psy4703 164 NNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSI--IKQGVDILKRLYMSKNEN 229 (401)
Q Consensus 164 ~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i--~~~gv~~Lk~l~~s~~d~ 229 (401)
.|+..+|++.++...+ ....+....++..++...+|... .+.....|.+.++.+|+.
T Consensus 257 ~~Y~~lg~~~~~~~fL---------~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 257 ECYAQLGKPAEGLNFL---------RRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHhCCHHHHHHHH---------HHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 7888888865554443 22222122333433333333222 334455666666555553
No 112
>KOG4162|consensus
Probab=98.74 E-value=8.7e-08 Score=100.39 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4703 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93 (401)
Q Consensus 14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~ 93 (401)
..+..+.+.++-++|..+..+|-.++ |. .+..|+.+|.++...|.+.+|.+.|..|+.+||+++....-+|.++..
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PL---SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33444444445555555555555555 32 455555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHH--HHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 94 IGKFEEAYT--DAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQL 138 (401)
Q Consensus 94 lg~~eeA~~--~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~ 138 (401)
.|+-.-|.. .+..++++||.|+++|..++.+.+..++..++...+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 555444444 555555555555555555555555555555444433
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.73 E-value=5.6e-07 Score=78.16 Aligned_cols=98 Identities=20% Similarity=0.191 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
..+....|..++..|+|++|+..|++++... |+......+.+.+|.+++..|+|++|+..++. +.-.+-.+.++..+|
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence 6677889999999999999999999999988 77566788899999999999999999999966 344455677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal 108 (401)
.+|...|++++|+..|++|+
T Consensus 126 di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999999874
No 114
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.72 E-value=1.4e-05 Score=81.09 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERA-TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~-~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
..+...+......|+++.|..+|.++.+.+ |+ .. ......+..+...|++++|+..++++++.+|+++.++..++
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-~~---~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~ 194 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELA-DN---DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE 194 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc---chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334444666699999999999999999998 76 32 23334589999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
.+|...|++++|+..+.+..+..+.++....
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999888776654433
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=2.7e-07 Score=91.24 Aligned_cols=129 Identities=18% Similarity=0.138 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----------------------------------CcchHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE----------------------------------SHERATCLKN 52 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~----------------------------------~~~~~~~~~n 52 (401)
...+.....|..++..|++++|+..++++++.. |+ .+.....+.+
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 445666777888888888888888888888776 53 1233445567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH----HHHHHHHHHHH
Q psy4703 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI----QPVLSRLFAIV 128 (401)
Q Consensus 53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~----~~~L~~l~~~~ 128 (401)
+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|.++.. +..++.++...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 77888899999999999999999999999999999999999999999999999999888765433 33567777766
Q ss_pred HHHHHHHH
Q psy4703 129 TKRMQENE 136 (401)
Q Consensus 129 ~~~~~a~~ 136 (401)
++..++..
T Consensus 200 G~~~~A~~ 207 (355)
T cd05804 200 GDYEAALA 207 (355)
T ss_pred CCHHHHHH
Confidence 66654444
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=1.4e-06 Score=95.05 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=111.8
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP- 81 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~- 81 (401)
..+|....++....+.+...+++++|+...+.+++.. |+ ...+|+..|..|++.+++.++... .++.+-+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KK---SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-Cc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc
Confidence 3568889999999999999999999999999999999 76 888999999999999988887766 6666666665
Q ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 82 ------------------KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 82 ------------------kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.|++.+|.||.++|++++|+..|+++++++|+|+.+...++-.+... +..++..
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 89999999999999999999999999999999999999999888777 5544443
No 117
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.71 E-value=1.1e-07 Score=72.21 Aligned_cols=70 Identities=29% Similarity=0.466 Sum_probs=64.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (401)
Q Consensus 16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~ 89 (401)
.+.++..++|++|+.++++++.++ |+ ++.++..+|.||+++|+|.+|+.+++++++.+|+++.+..-++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PD---DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467899999999999999999999 76 89999999999999999999999999999999999888766553
No 118
>KOG1156|consensus
Probab=98.70 E-value=2.7e-06 Score=87.96 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
.++.+....+..++|...+...+..+... |+ +...+...|..+..+|+-++|...+..++..|+.....|.-+|.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKF-PE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-Cc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 34444444444555555555555544444 33 334444444444444555555555555555444444444444544
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 91 ~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
+..-.+|++|+.+|+.|+.++|+|.+++..+.-++..+++.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 44445555555555555555555544444444444444433
No 119
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=7.8e-07 Score=87.94 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
+|+.+..+...|..+...|++++|...|.++.+.. |.+.........+|.++...|++++|+..++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 79999999999999999999999999999999999 65445667778899999999999999999999999988876543
Q ss_pred H-------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 85 F-------------------------------------RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 85 ~-------------------------------------~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
. .+|.++...|++++|+..++++++++|++..+...++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 2 455677888899999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CCChh----HHHHHHHHHHHhhhcchh
Q psy4703 128 VTKRMQENEQLQNKVHNMFKYVFDT-SAPMD----KRVTAVNNLVVLAREMSG 175 (401)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~----~~~~a~~~L~~l~~~~~g 175 (401)
.++..++.. +++..... +.... .....+..+...|+.+.+
T Consensus 161 ~g~~~eA~~--------~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 161 QGRFKEGIA--------FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHH--------HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 777755444 55555552 21111 223455556666665433
No 120
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.3e-06 Score=78.17 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
...+..++++|+.|=..|-+.-|.--|++++.+. |+ .+.++..+|.-+...|+|+.|.+.|+.++++||.+--++.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 3467888999999999999999999999999999 77 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
+||.++..-|+|.-|.+++.+-.+-||+||--..
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L 171 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL 171 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999999999999999975433
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.67 E-value=7e-08 Score=72.21 Aligned_cols=67 Identities=33% Similarity=0.406 Sum_probs=61.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (401)
Q Consensus 19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~ 89 (401)
++..|+|++|+..|+++++.+ |+ +..+++.+|.||++.|++++|...+.+++..+|+++..+.-+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 468899999999999999999 77 89999999999999999999999999999999998887776665
No 122
>KOG0495|consensus
Probab=98.66 E-value=1.7e-06 Score=89.49 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=115.3
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
++.+|++-+.+...-...+...+|+.|-.++.+|-... | ...+|+.-+....-+++.++|+..|+++|+..|++.
T Consensus 611 f~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-g----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-G----TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-C----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence 45678878888888888888888888988888888877 6 467888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
+.|..+|+++..+++.+.|...|...++..|+....+..|.++.+..+...++..
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 9999999999999999999999999999999999999999999888876655444
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=4.9e-07 Score=90.87 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=110.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|...|+++-.+-..|..++..++..+|++.+++++.++ |+ ...+..++|.+|++.|++.+|+...+..+.-+|+++
T Consensus 333 ~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 333 IAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PN---SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 45678888888899999999999999999999999999 77 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
..|..+|++|..+|+-.+|...+-..+.+..+-..+...+.+.....
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888877666666555554433
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.66 E-value=7.7e-08 Score=74.17 Aligned_cols=72 Identities=25% Similarity=0.448 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
+|..+..+.+.|..++..|+|++|+.+|++++++.. ++++..+.++.++|.+|..+|++++|+..+++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566666666666666666666666666665521 222334566666666666666666666666666654
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=1e-07 Score=95.97 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=60.1
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 43 SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA---LFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 43 ~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA---~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
.|.++..++|+|.+|+++|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36688899999999999999999999999999999988854 899999999999999999999999887
No 126
>KOG1129|consensus
Probab=98.63 E-value=1.4e-07 Score=90.62 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=102.4
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
+.-|.+...+...+.++-..+++++|+++|..+++++ |. +..+.-.+|..|+--++.+-|+.+|.+.|++.-.+++
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~---nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PI---NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cc---cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 3456666666667777777777777777777777777 54 5555566666677777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKR 159 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (401)
.+.++|.|.+.-++|+-++..|++|+..-.+. ..+|.+++.+...+++..- +..+|+.++..+++..
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl--------A~rcfrlaL~~d~~h~-- 429 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL--------AKRCFRLALTSDAQHG-- 429 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH--------HHHHHHHHhccCcchH--
Confidence 77777777777777777777777777654322 3566677766666666633 3447777777544433
Q ss_pred HHHHHHHHHhhh
Q psy4703 160 VTAVNNLVVLAR 171 (401)
Q Consensus 160 ~~a~~~L~~l~~ 171 (401)
.+++||.++..
T Consensus 430 -ealnNLavL~~ 440 (478)
T KOG1129|consen 430 -EALNNLAVLAA 440 (478)
T ss_pred -HHHHhHHHHHh
Confidence 35666666555
No 127
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=2.3e-06 Score=82.18 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
..++...-+.|-...+|++||+.-++.+.+. |. +-.-+.+|..+|..++...++++|+....+|++.||+.+.|-..
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 4467778899999999999999999999998 53 34567889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTN-KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~-~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (401)
+|+++...|+|+.|++.++++++.||.. +++.+.|..++..+++...... ++.++.+...
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~--------fL~~~~~~~~ 280 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN--------FLRRAMETNT 280 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH--------HHHHHHHccC
Confidence 9999999999999999999999999986 6777788888887777654433 5666666333
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=6.6e-07 Score=90.15 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld 77 (401)
.+|+++..+.++|..++..|+|++|+..|++||+++ |+......+|+|+|.||..+|++++|+.++.+|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999 8722222569999999999999999999999999983
No 129
>KOG3060|consensus
Probab=98.60 E-value=1.9e-05 Score=73.79 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
...+-...-++...|+.+.|..++++.-... |+ ...+-...|..+...|+|++|+++|+..|+-||.|...+-|.-
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~---S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG---SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC---ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 3344445566777888999999999988888 76 6667777888899999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (401)
.+...+|+--+|++.+...++..++|.+++..+..++-..++..++.. +++.+.-..+
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f--------ClEE~ll~~P 185 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF--------CLEELLLIQP 185 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH--------HHHHHHHcCC
Confidence 999999999999999999999999999999999999999999977666 5666555333
No 130
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.59 E-value=1.1e-07 Score=73.34 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=59.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
|..+.++.++|.+|..+|+|++|+.+|++++++. |.-+.+++++|.++..+|++++|+..+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999999762 223678999999999999999999999999876
No 131
>KOG1174|consensus
Probab=98.58 E-value=1.9e-06 Score=85.03 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=111.3
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-------------------------------cchHHHHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES-------------------------------HERATCLKN 52 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-------------------------------~~~~~~~~n 52 (401)
.-|++...+-..|..++..|++.+|+..|+++..++ |.. ...+.-|+-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 346677888899999999999999999999999999 640 123334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~ 132 (401)
-+...+..++|..|+.+.+++|..+|++..++...|.++..+|+.++|+-.|+.|..+.|..-.....|-..+-..+...
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 55556678899999999999999999999999999999999999999999999999999999888888887777766665
Q ss_pred HHHH
Q psy4703 133 QENE 136 (401)
Q Consensus 133 ~a~~ 136 (401)
++..
T Consensus 386 EA~~ 389 (564)
T KOG1174|consen 386 EANA 389 (564)
T ss_pred HHHH
Confidence 5543
No 132
>KOG4162|consensus
Probab=98.56 E-value=1.1e-06 Score=92.29 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE--DCSKSLEIVPDDPK 82 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~--~~~kAL~ldP~~~k 82 (401)
.|-.+..|+..|..+..+|++.+|.+.|..|+.++ |+ +......+|.++++.|+-.-|.. ....++++||.+++
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~---hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PD---HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CC---CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 45667788999999999999999999999999999 77 78888999999999998887877 99999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~ 117 (401)
+|+.+|.++.++|+.++|..+|+.|+++++.+|.-
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999999999999999998753
No 133
>KOG1128|consensus
Probab=98.55 E-value=3.4e-07 Score=95.60 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy4703 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAY 91 (401)
Q Consensus 12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~ 91 (401)
....|+..+.+++|+++..+++..++++ |- ....|+++|.|++++++++.|..+|.+++.++|++..+|.+++.+|
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~~n-pl---q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLEIN-PL---QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhhcC-cc---chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 3444555566789999999999999999 54 8889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 92 ~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
..+++-.+|...+++|++-+-++..++++..-+....+....+..
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 999999999999999999998888999988888888877765544
No 134
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.55 E-value=1.4e-06 Score=88.77 Aligned_cols=127 Identities=15% Similarity=0.079 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP--KAL 84 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~--kA~ 84 (401)
++...+...|..+...|++++|+..+.++++.. |+... ......+....+..++...++..++++++.+|+++ ..+
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~-~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA-ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCccc-chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 578888999999999999999999999999999 76221 11123344445556889999999999999999999 888
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAK--HIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~--kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
..+|.++..+|+|++|.++|+ .+++.+|++.. ...++.++...++..++.+
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 899999999999999999999 68888997766 4589999999888766554
No 135
>KOG1129|consensus
Probab=98.50 E-value=1.7e-07 Score=89.95 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=114.9
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--- 78 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP--- 78 (401)
++.+|.+.++.-..|..||-.++.+-|+.+|++.+++. -. .+.++.|+|.|.+-.++|+-++..|.+|+..-.
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 34566677777777888999999999999999999998 44 899999999999999999999999999998754
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.-.+.||++|.+....|++.-|.++|+-++..||++.++..+|+.+....++...+..
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 3467899999999999999999999999999999999999999998887777655444
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.48 E-value=1.2e-06 Score=91.59 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=92.8
Q ss_pred ccCChhHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQG--------DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g--------~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA 73 (401)
|+.+|+.+.++-..+..+.... +...+.....+++.+. .+ +..+.+|.-+|..+...|++++|...+++|
T Consensus 369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~-~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rA 446 (517)
T PRK10153 369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP-EL-NVLPRIYEILAVQALVKGKTDEAYQAINKA 446 (517)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc-cC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6788999888888777665542 3445566666666652 22 235688888999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (401)
Q Consensus 74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~ 116 (401)
++++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 447 l~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 447 IDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999 5889999999999999999999999999999999875
No 137
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=7.3e-06 Score=82.83 Aligned_cols=132 Identities=9% Similarity=-0.029 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhcCCCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGD---YETALDFYTKAL---KVTAEESHERATCLKNRAAVYLKQ---------NQNDKVIEDCSKSLE 75 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~---y~eAi~~y~~Al---~l~~p~~~~~~~~~~n~a~~y~kl---------g~y~~Ai~~~~kAL~ 75 (401)
.++.+|...+.++. .+.|+.+|.+|+ .++ |+ .+.+|..+|.||+.. .+-.+|.....+|++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-p~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-TL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-cc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 44777877776664 456999999999 888 65 999999999999875 235678999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703 76 IVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (401)
Q Consensus 76 ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (401)
+||.|+.|++.+|.++...++++.|...|++|+.++|+...++...+-+....++...+.. +.++++..++
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~--------~i~~alrLsP 403 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI--------CIDKSLQLEP 403 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH--------HHHHHhccCc
Confidence 9999999999999999999999999999999999999999999999888887777654444 6777777444
No 138
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.47 E-value=5e-06 Score=86.99 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Q psy4703 8 DYNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------QNDKVIEDCSKSLEI 76 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--------~y~~Ai~~~~kAL~l 76 (401)
.+-.++.+|..++..++ +..|+.+|++|++++ |+ ++.+|-.++.+|.... +...+.....+++.+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 35566888998887766 889999999999999 87 8889998888886642 345666667776664
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703 77 --VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (401)
Q Consensus 77 --dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (401)
+|.++.+|.-+|..+...|++++|...+++|++++|+ ..++..+++++...++..++.. .|++++..++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~--------~~~~A~~L~P 484 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD--------AYSTAFNLRP 484 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH--------HHHHHHhcCC
Confidence 7888899999999999999999999999999999994 6788899999999888755544 7888888555
Q ss_pred ChhHHHHHHHHHHHh
Q psy4703 155 PMDKRVTAVNNLVVL 169 (401)
Q Consensus 155 ~~~~~~~a~~~L~~l 169 (401)
..+. ....+|+...
T Consensus 485 ~~pt-~~~~~~~~f~ 498 (517)
T PRK10153 485 GENT-LYWIENLVFQ 498 (517)
T ss_pred CCch-HHHHHhcccc
Confidence 5443 3344555543
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=5.3e-06 Score=90.71 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=118.5
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----------------cchHHHHHHHHHHHHHcCCHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES----------------HERATCLKNRAAVYLKQNQNDK 65 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~----------------~~~~~~~~n~a~~y~klg~y~~ 65 (401)
++.+|+....++..|..++..+++.+|... .++... +.. +.+..+++.+|.||-++|++++
T Consensus 58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 456788899999999999999988887766 566555 321 2244799999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------CCCCccH-HHHHHHH
Q psy4703 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------------------EPTNKAI-QPVLSRL 124 (401)
Q Consensus 66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l--------------------~P~~~~~-~~~L~~l 124 (401)
|...|+++|++||+|+.++.++|-.|... ++++|...+.+|+.. +|.+... ...+.++
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki 213 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence 99999999999999999999999999999 999999999998775 3433222 2222233
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHh
Q psy4703 125 FAIVT------------KRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLVVL 169 (401)
Q Consensus 125 ~~~~~------------~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~~l 169 (401)
....+ +.-+..+.+ ....++++.+++ .+.+...+...+.|+...
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~-~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDW-DEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 33322 111112222 234567888888 677777777777777643
No 140
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.44 E-value=3.5e-06 Score=75.03 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy4703 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ----------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI 94 (401)
Q Consensus 25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~----------y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~l 94 (401)
|+.|.+.|+.....+ |. ++..+++=|.+++.+.+ +++|+.-|++||.++|+...|++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~n-P~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999999999 76 88889998888887644 56789999999999999999999999999987
Q ss_pred CC-----------HHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 95 GK-----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 95 g~-----------~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
+. |++|..+|++|...+|+|...+..|....
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 75 89999999999999999987777765543
No 141
>PRK15331 chaperone protein SicA; Provisional
Probab=98.44 E-value=1.1e-05 Score=70.99 Aligned_cols=111 Identities=11% Similarity=0.009 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
......+..|.-++..|++++|...|.-..-+||.+++.++.+|.++..+++|++|+..|-.+..++++|+......+.+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 46667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHH
Q psy4703 125 FAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAV 163 (401)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 163 (401)
+-.+++...+.. +|..+...+.....+.++.
T Consensus 115 ~l~l~~~~~A~~--------~f~~a~~~~~~~~l~~~A~ 145 (165)
T PRK15331 115 QLLMRKAAKARQ--------CFELVNERTEDESLRAKAL 145 (165)
T ss_pred HHHhCCHHHHHH--------HHHHHHhCcchHHHHHHHH
Confidence 999998855544 7888887666554444443
No 142
>KOG1127|consensus
Probab=98.40 E-value=5.2e-06 Score=89.29 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=94.4
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD- 80 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~- 80 (401)
+..++.-+-++-..|..|..--+...|..+|.+|.++| |+ ++.+.-..+..|....+++.|...+..+-+.+|..
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-at---daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-AT---DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 45667777778888888877778888888888888888 55 66666667777777777777777766666666643
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 81 -~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
...|.+||..|.+-+++.+|+.+|+.+++.+|+|.+.+..++.++...+.+..+
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence 234556777777777777888888888888888877788887777777766443
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.39 E-value=7.7e-06 Score=78.33 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH---
Q psy4703 47 ATCLKNRAAVY-LKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP--- 119 (401)
Q Consensus 47 ~~~~~n~a~~y-~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~--- 119 (401)
...++..|..+ ++.|+|++|+..|+..++..|++ +.++|.+|.+|+..|+|++|+..|++++...|+++....
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888886 67899999999999999999988 589999999999999999999999999999998755544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q psy4703 120 VLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDK 158 (401)
Q Consensus 120 ~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (401)
.++.++..+++.. .+..+|+.+...-++...
T Consensus 222 klg~~~~~~g~~~--------~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTA--------KAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHH--------HHHHHHHHHHHHCcCCHH
Confidence 4455555555443 344467777764333333
No 144
>KOG1156|consensus
Probab=98.38 E-value=9.4e-06 Score=84.07 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=135.8
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
+...|++.+.+-..|-.+...|+-++|..+-..++..+ +. ...+|.-+|..+...++|++|+.+|..|+.++|+|.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 45678899999999999999999999999999999999 66 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVT 161 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (401)
..|+-++-...++++|+.....-.+.+++.|+...-+..++..+...+++..+.. +.+.|......+.+ .....
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~-----il~ef~~t~~~~~s-~~~~e 183 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE-----ILEEFEKTQNTSPS-KEDYE 183 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccCCC-HHHHH
Confidence 9999999999999999999999999999999999999999999888888765543 55556655542233 23344
Q ss_pred HHHHHHHhhh
Q psy4703 162 AVNNLVVLAR 171 (401)
Q Consensus 162 a~~~L~~l~~ 171 (401)
....++.+.+
T Consensus 184 ~se~~Ly~n~ 193 (700)
T KOG1156|consen 184 HSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 145
>KOG1310|consensus
Probab=98.36 E-value=1.2e-06 Score=88.73 Aligned_cols=112 Identities=25% Similarity=0.359 Sum_probs=101.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ---NQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl---g~y~~Ai~~~~kAL~ldP~~~ 81 (401)
-|..++.++.+||..|-.+.+..|+..|.++++.. |. ...+|.|+|.++++. |+.-.|+.+|..|+++||...
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~-~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ 445 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV-PD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ 445 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc-cc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH
Confidence 36778999999999999999999999999999999 65 899999999999985 577889999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
+|||+++.++..++++.+|+.+...+....|.+......
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 999999999999999999999998888888866554443
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.9e-05 Score=75.50 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHH
Q psy4703 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK---FEEAY 101 (401)
Q Consensus 25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~---~eeA~ 101 (401)
.+..+.-.+.-++.+ |+ +..-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.++..... -.++.
T Consensus 138 ~~~l~a~Le~~L~~n-P~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQQN-PG---DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHHhC-CC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 456666677778888 76 899999999999999999999999999999999999999999999976654 56789
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4703 102 TDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDT 152 (401)
Q Consensus 102 ~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (401)
..+++++.+||+|..+...|+......+++.++.. .|+.+++.
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~--------~Wq~lL~~ 256 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA--------AWQMLLDL 256 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH--------HHHHHHhc
Confidence 99999999999999999999999888888765544 67778773
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1e-06 Score=69.10 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 60 QNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 60 lg~y~~Ai~~~~kAL~ldP~--~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.|+|+.|+..++++++.+|. +...++.+|.+|+.+|+|++|+..+++ ...+|.+......+++++..+++..++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 566788899999999999999999999 88999988999999999999999876655
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=98.33 E-value=5.9e-06 Score=83.51 Aligned_cols=108 Identities=13% Similarity=-0.031 Sum_probs=98.8
Q ss_pred cCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 3 DNNMNDYNKLKESGNSAFKQ---------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~---------g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA 73 (401)
..+|..+.+|...+..++.. .+-.+|.+.-.+|++++ |. ++.++..+|.+....++++.|+..+++|
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA 364 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV---DGKILAIMGLITGLSGQAKVSHILFEQA 364 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 67888899998888887754 34567889999999999 76 9999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
+.++|+++.+++.+|.++...|+.++|+..++++++++|.-
T Consensus 365 ~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 365 KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 99999999999999999999999999999999999999964
No 149
>KOG4648|consensus
Probab=98.32 E-value=1.9e-06 Score=83.33 Aligned_cols=102 Identities=17% Similarity=0.251 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~ 129 (401)
...+|..||++|.|++||.+|++++.++|.++..+.+||.+|+++.+|..|..+|..|+.+|-....++..-+.....++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999998766555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCChhHH
Q psy4703 130 KRMQENEQLQNKVHNMFKYVFD-TSAPMDKR 159 (401)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (401)
...++.+ -++.++. .|.+.+.+
T Consensus 180 ~~~EAKk--------D~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 180 NNMEAKK--------DCETVLALEPKNIELK 202 (536)
T ss_pred hHHHHHH--------hHHHHHhhCcccHHHH
Confidence 5433332 3556666 34444433
No 150
>KOG4234|consensus
Probab=98.29 E-value=2.2e-05 Score=70.98 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD-----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~-----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
+.-+..-|.-+|+.|+|++|..-|..||++.|.- .-.|.++|.|+++++.++.|+.++.++++++|.+..+...-
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3445567888999999999999999999999965 34688999999999999999999999999999987777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4703 122 SRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAP 155 (401)
Q Consensus 122 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (401)
+.++..+.... ..+.+ |+.++...++
T Consensus 175 Aeayek~ek~e-------ealeD-yKki~E~dPs 200 (271)
T KOG4234|consen 175 AEAYEKMEKYE-------EALED-YKKILESDPS 200 (271)
T ss_pred HHHHHhhhhHH-------HHHHH-HHHHHHhCcc
Confidence 66666654433 33444 5666664443
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.27 E-value=4.2e-05 Score=72.51 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC------------------HHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------------NDKVIEDC 70 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~------------------y~~Ai~~~ 70 (401)
..+....|..+++.++|++|+..|++.++.. |+++....+++.+|.+++.+++ -.+|+..+
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 3455899999999999999999999999999 9989999999999999866651 25788999
Q ss_pred HHHHHhCCCCH---HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 71 SKSLEIVPDDP---KA--------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 71 ~kAL~ldP~~~---kA--------------~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
+..++..|+.. .| -+..|.-|.+.|.|..|+.-++.+++-.|+.+...+.|..+...
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999763 22 23467779999999999999999999999887666655444433
No 152
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.27 E-value=0.00043 Score=65.14 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KAL 84 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~ 84 (401)
.+..|++.|...++.|+|++|+++|+...... |..+....+...++-++++.++|++|+...++=+.+.|.++ -++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 57889999999999999999999999999999 87788899999999999999999999999999999999775 468
Q ss_pred HHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 85 FRRCQAYEAIGK--------FEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 85 ~~~a~a~~~lg~--------~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
|-+|.++...=+ -.+|+..|+..++--|+++=+....
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~ 156 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK 156 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 888888764432 4579999999999999985444333
No 153
>KOG0543|consensus
Probab=98.27 E-value=2e-05 Score=78.00 Aligned_cols=118 Identities=11% Similarity=0.132 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---------------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---------------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
.+.....+|..|++.|+|..|+..|++|+..-+. -..+|.+++.||.++++|.+|+..+.++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4556677899999999999999999998876331 1457999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q psy4703 111 EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR 171 (401)
Q Consensus 111 ~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 171 (401)
+|+|.-+...-++++..++++..+.. .|+.+....++..........+....+
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~--------df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARD--------DFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHH--------HHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999865544 678888744443444444444444333
No 154
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.26 E-value=5.7e-05 Score=69.49 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKSL 74 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-----------y~~Ai~~~~kAL 74 (401)
|-..++.+..|..+++.|+|.+|+..|++.++.. |+++....+++.+|.+++.+.. ..+|+..|+..+
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999 9888899999999999887643 458999999999
Q ss_pred HhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703 75 EIVPDDPKA-----------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (401)
Q Consensus 75 ~ldP~~~kA-----------------~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~ 126 (401)
...|++..+ -+..|..|.+.|.|..|+.-++.+++-.|+.+.....+..+..
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 999987322 3457889999999999999999999999998766555444333
No 155
>KOG0546|consensus
Probab=98.25 E-value=1.6e-06 Score=84.13 Aligned_cols=126 Identities=29% Similarity=0.336 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--C-------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--E-------------ESHERATCLKNRAAVYLKQNQNDKVIEDCSKS 73 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p-------------~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA 73 (401)
.+..++.|+..|+.++|..|...|.+++.--. | -.......+.|.+.|-++.+.+..|+..+..+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence 45667889999999999999999998876431 1 12345677889999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 74 LEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 74 L~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
++.++...++||++++++..+.++++|+++++.+....|++.++...+........++.+.
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~ 362 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRK 362 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887777666665443
No 156
>KOG1128|consensus
Probab=98.24 E-value=2.9e-05 Score=81.48 Aligned_cols=91 Identities=20% Similarity=0.147 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
++.+....|......++|.++..+++..++++|-....||++|-+..+++++..|..+|.+++.++|++.+++.++...+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 33344444555566799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy4703 126 AIVTKRMQENE 136 (401)
Q Consensus 126 ~~~~~~~~a~~ 136 (401)
..++++.++-.
T Consensus 564 i~~~~k~ra~~ 574 (777)
T KOG1128|consen 564 IRLKKKKRAFR 574 (777)
T ss_pred HHHhhhHHHHH
Confidence 99988866544
No 157
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.21 E-value=0.00059 Score=67.49 Aligned_cols=240 Identities=14% Similarity=0.165 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DPKALFR 86 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-~~kA~~~ 86 (401)
.+....+.|..-+..|+|..|.....++-+.. +. ....|..-+.+.-++|+++.|=.+..++-+..++ ..-....
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 35556678888889999999999999987777 43 4556666677888999999999999999999443 4567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCChhHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD--TSAPMDKRVTAVN 164 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~ 164 (401)
++..+...|+++.|......+++..|.++++.....+++...+.......-+.+ ..+... .+.-.+....+.+
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~-----L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK-----LRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH-----HHHccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887655442211 111211 2222333455666
Q ss_pred HHHHhhhcchhhHHHhhhhHHHHHHHHhhc-cCchhHHhhHH-HHH-HHHHHhcHHHHHHHHc-CCChhHHHHHHHhhhh
Q psy4703 165 NLVVLAREMSGAEMLLKSGVAKQINTLLKC-ETNEEIYLGEE-DFI-TSIIKQGVDILKRLYM-SKNENIRVRALVGLCK 240 (401)
Q Consensus 165 ~L~~l~~~~~gae~~~~e~~v~~L~~ll~~-~~~~e~~lA~e-~fi-~~i~~~gv~~Lk~l~~-s~~d~i~~ralvgLck 240 (401)
.++.....+.|.+-+ ..-...+-+. -.+|++.++|. .|| .+..+....++++.++ .-+++ ||-
T Consensus 234 glL~q~~~~~~~~gL-----~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--------L~~ 300 (400)
T COG3071 234 GLLQQARDDNGSEGL-----KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--------LCR 300 (400)
T ss_pred HHHHHHhccccchHH-----HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--------HHH
Confidence 677766666665553 1122222221 14688888874 444 4456777889999887 55555 232
Q ss_pred ccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCch
Q psy4703 241 LGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPD 278 (401)
Q Consensus 241 l~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~ 278 (401)
+-.. ...|...+|.++.++|+-.-..+|.
T Consensus 301 ~~~~---------l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 301 LIPR---------LRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred HHhh---------cCCCCchHHHHHHHHHHHhCCCChh
Confidence 2211 1124456888999999876555553
No 158
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.20 E-value=0.0018 Score=73.35 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKV----TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKA 83 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l----~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA 83 (401)
...|......+.+.|++++|...|.+.... . | +...|..+-.+|.+.|++++|...|++..+.+ +.+...
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~-P----D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-P----DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC-C----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 445666666777777777777777766542 2 3 34556666666777777777777777766665 345566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
|..+..+|.+.|++++|+..|++..+.
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 666666777777777777776666554
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.19 E-value=7.7e-05 Score=77.93 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
+++.+|..|-..|++++|+.+.++||+..|..+..|+.+|.+|-..|++.+|...++.|-.+|+.|.-+.....+..-..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 56788999999999999999999999999999999999999999999999999999999999999877777666655555
Q ss_pred HHHHHH
Q psy4703 129 TKRMQE 134 (401)
Q Consensus 129 ~~~~~a 134 (401)
++...+
T Consensus 276 ~~~e~A 281 (517)
T PF12569_consen 276 GRIEEA 281 (517)
T ss_pred CCHHHH
Confidence 555444
No 160
>KOG1127|consensus
Probab=98.19 E-value=0.00015 Score=78.45 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=116.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
.+.++.++++....+..+....+|+.|......+-+.. |. ......|..+|..|++.+++.+|+.+++.|+..+|.+.
T Consensus 519 FeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~ 596 (1238)
T KOG1127|consen 519 FELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY 596 (1238)
T ss_pred hcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH
Confidence 46789999999999999999999999999977777777 53 12334566699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.+|..+|.+|..-|+|.-|++.|.+|..++|.+.-...-.+.+...++++..+..
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999998887777777777777766554
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.17 E-value=2.7e-05 Score=65.68 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CccHHHHH
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT---NKAIQPVL 121 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~---~~~~~~~L 121 (401)
.+.+++|.++-.+|+.++|+..|+++++..... ..+++.+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 478999999999999999999999999986444 679999999999999999999999999999898 66777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy4703 122 SRLFAIVTKRMQENE 136 (401)
Q Consensus 122 ~~l~~~~~~~~~a~~ 136 (401)
..+....++..++..
T Consensus 82 Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 82 ALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHCCCHHHHHH
Confidence 777777676655544
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=1.8e-05 Score=79.83 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=97.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy4703 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE 98 (401)
Q Consensus 19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~e 98 (401)
+...++|+.|+..+++..+.+ |+ +...+|.+++..++..+|++...++|..+|.+...+.-.+..++..++++
T Consensus 179 l~~t~~~~~ai~lle~L~~~~-pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD-PE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344678999999999988888 64 44558888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQ 139 (401)
Q Consensus 99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~ 139 (401)
.|+..++++.++.|++-..|..|++++..+++...+....+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999998888866443
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=4.6e-05 Score=76.93 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
++.....+..++..++..+|+..+.++++.. |. +..++...|..+++.++|+.|+..+.+++.+.|.+.+.|+.++
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQ---DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3456678899999999999999999999999 76 7889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l 110 (401)
.+|..+|+|++|+..+..+--.
T Consensus 276 ~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999877754433
No 164
>KOG2003|consensus
Probab=98.09 E-value=0.00019 Score=71.92 Aligned_cols=129 Identities=20% Similarity=0.214 Sum_probs=111.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+..-.+++++.|..+-..|+.++|+++|-+.-.+- -+ ++.+++.+|.+|..+++..+|++++.++..+-|+++..
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~n---n~evl~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LN---NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-Hh---hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 344557899999999999999999999998755544 22 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
+-.+|..|-+.|+-.+|.+++-...+..|.|-+..++|+.-+...+-..++..
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999988999999999998888877766555555444
No 165
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.02 E-value=9.2e-06 Score=52.23 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~ 113 (401)
++|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 166
>KOG2376|consensus
Probab=98.02 E-value=0.00068 Score=70.00 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
|++..+++..-.++.+.++|++|+.. |+.. +.........+..|-|+++++..++|+.+++ .+++.+.+.+.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~----ikk~-~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKL----IKKN-GALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhc-chhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 44444444444444444444444422 2222 1111123333677788888888888888777 56666777778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
-+|++++++|+|++|+..|+..++-+.++
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 88888888888888888888776655443
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00033 Score=62.94 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFR 86 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~~kA~~~ 86 (401)
.......|+.+...|+|.+|..+|.+++.-.-.+ ++..+..+|.+.+..+++..|....+...+.+|. .+..+.-
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3455678999999999999999999998743123 7889999999999999999999999999999984 4777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQEN 135 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~ 135 (401)
.|.+|-.+|++.+|...|+.++...|+ ++....++.....++...++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999999999999886 455566666666666544433
No 168
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=8.6e-05 Score=66.25 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK----------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 63 y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~----------~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~ 132 (401)
|+.|.+.++.....||.++.++++-|-++..+.+ +++|+.-|++|+.++|+...+...++.++...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999998854 577899999999999999999999999999887654
Q ss_pred HHH---HHHHHHHHHHHHHhhcCCCChhHHHHH
Q psy4703 133 QEN---EQLQNKVHNMFKYVFDTSAPMDKRVTA 162 (401)
Q Consensus 133 ~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~a 162 (401)
... ..+..++.++|+.+.+..++.+...+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 322 245577788888888855554444443
No 169
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=98.02 E-value=7.7e-05 Score=65.91 Aligned_cols=107 Identities=30% Similarity=0.478 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHH--HHhhhcchhhHHHhhhhHHHHHHHHhh-ccCchhHHhhHHHHH--
Q psy4703 134 ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNL--VVLAREMSGAEMLLKSGVAKQINTLLK-CETNEEIYLGEEDFI-- 208 (401)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L--~~l~~~~~gae~~~~e~~v~~L~~ll~-~~~~~e~~lA~e~fi-- 208 (401)
+...+.+.+.++++..+..+. .+....+...+ +..+-++.+.+.+..++-++.+..++. ...+..+..+.-+.+
T Consensus 36 ~~~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a 114 (157)
T PF11701_consen 36 AREEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSA 114 (157)
T ss_dssp HHHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 333455667777777776322 22333443333 445566677777767777877887776 234555555543333
Q ss_pred --------HHHHHhcHHHHHHHHc-CCChh-HHHHHHHhhhhc
Q psy4703 209 --------TSIIKQGVDILKRLYM-SKNEN-IRVRALVGLCKL 241 (401)
Q Consensus 209 --------~~i~~~gv~~Lk~l~~-s~~d~-i~~ralvgLckl 241 (401)
.+|.++|++||+++|+ ++++. |++||+|||||+
T Consensus 115 Ac~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 115 ACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6789999999999996 78888 999999999996
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=6.3e-06 Score=53.46 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703 69 DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY 101 (401)
Q Consensus 69 ~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~ 101 (401)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999886
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=0.00014 Score=68.92 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~ 126 (401)
.|+-|.-+++.|+|..|...|..=+..-|+. +.|+|.+|++++.+|+|++|...|..+.+-.|+++.+.+.|-++..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999976 6799999999999999999999999999999998877776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 127 IVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.+.+.... ..+..+|+.+..
T Consensus 224 ~~~~l~~~-----d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNT-----DEACATLQQVIK 243 (262)
T ss_pred HHHHhcCH-----HHHHHHHHHHHH
Confidence 55554433 224446777776
No 172
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.97 E-value=1.3e-05 Score=51.45 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
+.+|+++|.+|+.+|+|++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888899999999999998888864
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.95 E-value=3.7e-05 Score=74.36 Aligned_cols=134 Identities=21% Similarity=0.254 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDD---- 80 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~~---- 80 (401)
+..+...|+.|-..|+|++|..+|.++..+.. .+....+..|.+.+.+|.+. ++++|+.++++|+++- .++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 56677888989999999999999999977652 11233566777777777666 9999999999999873 222
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 81 PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 81 ~kA~~~~a~a~~~l-g~~eeA~~~~~kal~l~P~~~------~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.+.+.++|.+|... |++++|+..|++|+++...+. .....++.++..++++.+ +.++|+.+..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~--------A~~~~e~~~~ 183 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE--------AIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH--------HHHHHHHHHH
Confidence 56799999999998 999999999999998743222 223334444444444433 3445666554
No 174
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.94 E-value=0.00026 Score=61.10 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------------CcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE------------------SHERATCLKNRAAVYLKQNQNDKVIEDC 70 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~------------------~~~~~~~~~n~a~~y~klg~y~~Ai~~~ 70 (401)
-+.+...|......|+...++..+.+++.+...+ ......+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4455667888888999999999999999987411 1334556666777788888999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 71 SKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 71 ~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
.+++..+|.+-.+|..+-.+|..+|+..+|+..|+++.
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999888888888899999999988888887764
No 175
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.93 E-value=0.0001 Score=71.74 Aligned_cols=120 Identities=14% Similarity=0.041 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
+.+..--.-..+++.++++.|...+..+-+.+ .+ ........|.+.+..| .+.+|.-.|++..+..|..+..+.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQID-ED---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH
Confidence 45555556778899999999999999988888 43 4333333444444455 699999999998888888999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
.+|.+++.+|+|++|...++.+++.+|+++.+..++..+...++..
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999888887777666654
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.92 E-value=1.8e-05 Score=54.23 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
++..+|.+|..+|++++|+..|+++++.+|+++.+++.+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555555554
No 177
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.92 E-value=2.4e-05 Score=53.63 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578899999999999999999999999999999999888865
No 178
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.91 E-value=2.6e-05 Score=49.82 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
++++.+|.++..+|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
No 179
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.87 E-value=0.00076 Score=70.56 Aligned_cols=137 Identities=16% Similarity=0.105 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~ 89 (401)
-.++-.+..+-..|+|++|+.+.++||+.. |+ ...+|...|.+|-+.|++.+|..+.+.|-.+|+.|--.-...+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 455778999999999999999999999999 77 89999999999999999999999999999999998877777889
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-cc------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 90 AYEAIGKFEEAYTDAKHIHRVEPTN-KA------IQ--PVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 90 a~~~lg~~eeA~~~~~kal~l~P~~-~~------~~--~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.++..|+.++|...+.....-+-+. .. +| ...++.+...+....+.+.+ ..+.++|+...+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~-~~v~k~f~~~~~ 340 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF-HAVLKHFDDFEE 340 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHhc
Confidence 9999999999999988765544211 11 11 23345555555555554432 334444444443
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.00045 Score=66.76 Aligned_cols=105 Identities=26% Similarity=0.451 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC---
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVP--DD--- 80 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~kl-g~y~~Ai~~~~kAL~ldP--~~--- 80 (401)
+..+.+ +-..++.+++++|+.+|++|+++.. .....-+.++.++|.+|... |++++|+..|.+|+++-. +.
T Consensus 75 a~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 75 AKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 344444 4445566699999999999998742 12233577899999999998 999999999999998732 12
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 81 -~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
...+...|.++..+|+|++|+..|+++....-++
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 4567889999999999999999999998865443
No 181
>KOG1130|consensus
Probab=97.84 E-value=8.9e-05 Score=73.49 Aligned_cols=159 Identities=13% Similarity=0.179 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPD--DPK 82 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l----dP~--~~k 82 (401)
++-+.||.|+-.|+|+.||.+-+.-+.+.+ .++.-.-.++.|+|.||.-+|+|+.|+++|..++.+ ... .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456789999999999999999887777753 232335578999999999999999999999986544 333 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT------NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD---TS 153 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~------~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 153 (401)
.-|.+|..|.-+.+|+.||.++++-+.|... ...+...|+..+..++...++.. + +....+...+ ..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~-f---ae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY-F---AELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH-H---HHHHHHHHHHhCCcc
Confidence 6789999999999999999999998776432 12344456677777776665544 1 1222233332 33
Q ss_pred CChhHHHHHHHHHHHhhhcc
Q psy4703 154 APMDKRVTAVNNLVVLAREM 173 (401)
Q Consensus 154 ~~~~~~~~a~~~L~~l~~~~ 173 (401)
.....+.........+|.++
T Consensus 353 gelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 353 GELTARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhhhhhHHHHHHhCCCc
Confidence 34455555555566666654
No 182
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.00015 Score=70.52 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 6 MNDYNKLKESGNSAFKQG--DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g--~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+..-.....++..+..| .+.+|.-.|++..+.. |. .+.++..+|.|++.+|+|++|...+.+++..+|+++.+
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-GS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 344444555666666666 6999999999987776 44 67888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCccHH
Q psy4703 84 LFRRCQAYEAIGKF-EEAYTDAKHIHRVEPTNKAIQ 118 (401)
Q Consensus 84 ~~~~a~a~~~lg~~-eeA~~~~~kal~l~P~~~~~~ 118 (401)
+.++..+...+|+. +.+.+.+.+....+|+++-+.
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999 667778888888899875443
No 183
>KOG3785|consensus
Probab=97.78 E-value=0.00089 Score=65.48 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=85.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy4703 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96 (401)
Q Consensus 17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~ 96 (401)
..+..+.+|..|+..++-...++ .+ ....+-.-+|.||+.+|+|++|+..|+.+...+..+.+.+.++|.+++.+|.
T Consensus 30 edfls~rDytGAislLefk~~~~-~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLD-RE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccc-hh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 45677899999999999888777 32 2345566689999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (401)
Q Consensus 97 ~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~ 130 (401)
|.+|.....++ |+++-....+-.+...+.+
T Consensus 107 Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 107 YIEAKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 99998776554 6766555555444444443
No 184
>KOG1130|consensus
Probab=97.77 E-value=0.00012 Score=72.67 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHH
Q psy4703 7 NDYNKLKESGNSAFKQGD--------------------YETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQND 64 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~--------------------y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~ 64 (401)
..+.++++.||.|..+|+ ++.|+++|.+-+++.. .+.-....+|-|+|..|+-+|+|+
T Consensus 133 ~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~ 212 (639)
T KOG1130|consen 133 LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFD 212 (639)
T ss_pred hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHH
Confidence 356789999999998776 4678888887777652 122235578999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--cc--HHHHHHHHHHHHHHHH
Q psy4703 65 KVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--PTN--KA--IQPVLSRLFAIVTKRM 132 (401)
Q Consensus 65 ~Ai~~~~kAL~ldP~~------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~--P~~--~~--~~~~L~~l~~~~~~~~ 132 (401)
+||..-+.=|++...+ -.|+-++|.+|.-+|+|+.|+++|++.+.+. -.+ .+ .-..|+..+..+++.+
T Consensus 213 ~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~ 292 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ 292 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH
Confidence 9999988877775432 4689999999999999999999999977542 222 22 2345778888888876
Q ss_pred HHHH
Q psy4703 133 QENE 136 (401)
Q Consensus 133 ~a~~ 136 (401)
++..
T Consensus 293 kAI~ 296 (639)
T KOG1130|consen 293 KAIT 296 (639)
T ss_pred HHHH
Confidence 6655
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0024 Score=57.54 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=120.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q psy4703 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPDDPKALFRRCQAYEAI 94 (401)
Q Consensus 16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-ldP~~~kA~~~~a~a~~~l 94 (401)
+....+.=|.+.++..-.+.+... |+ ..-.+.+|.+...+|+|.+|...|.+++. +-.+++..+..++++.+..
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~A-pT----vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIA-PT----VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhc-hh----HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 444555557777777777888888 64 44556799999999999999999999986 5678899999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhc
Q psy4703 95 GKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLARE 172 (401)
Q Consensus 95 g~~eeA~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 172 (401)
+++.+|...+++..+.+|. .+.-...+++.+...+....++. -|+.+.+--+..+.+..-..-|+.+||.
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes--------afe~a~~~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES--------AFEVAISYYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH--------HHHHHHHhCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999985 56677788888888877654444 5777777667777787788888888887
Q ss_pred chhhHHH
Q psy4703 173 MSGAEML 179 (401)
Q Consensus 173 ~~gae~~ 179 (401)
+++-.++
T Consensus 210 ~ea~aq~ 216 (251)
T COG4700 210 REANAQY 216 (251)
T ss_pred hHHHHHH
Confidence 6554444
No 186
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.76 E-value=0.0061 Score=69.13 Aligned_cols=124 Identities=10% Similarity=0.048 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE----IVPDDPK 82 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~----ldP~~~k 82 (401)
+...|......|.+.|++++|+..|.+.....- | +...|..+..+|.+.|++++|.+.+.+... +.| +..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P----D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP----DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 466788888899999999999999999876651 4 467888899999999999999999999876 345 457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~-P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.|..+-.+|.+.|++++|.+.|+...+.+ +.+...+..+-..+...++..++..
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 78888889999999999999999988876 3455666666666665555544433
No 187
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.75 E-value=7.3e-05 Score=47.67 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
.+++.+|.+|+.+|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888888764
No 188
>KOG4642|consensus
Probab=97.74 E-value=7.9e-05 Score=69.09 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVT 129 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~ 129 (401)
+.--|.+|+.-++|..|+.+|.++|.++|..+..|.+++.+|+++.+|+.+..+++++++++|+....+..++......+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44457788888999999999999999999999999999999999999999999999999999999888888888877766
Q ss_pred HHHHHHH
Q psy4703 130 KRMQENE 136 (401)
Q Consensus 130 ~~~~a~~ 136 (401)
.+..+..
T Consensus 93 ~~~eaI~ 99 (284)
T KOG4642|consen 93 GYDEAIK 99 (284)
T ss_pred cccHHHH
Confidence 6654443
No 189
>KOG4555|consensus
Probab=97.72 E-value=0.00041 Score=58.83 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
+-..|.+....|+.+.|++-|.++|.+.|..+.+|.+|++++.-.|+.++|+.++++++++....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 34457778889999999999999999999999999999999999999999999999999996543
No 190
>KOG0495|consensus
Probab=97.71 E-value=0.0006 Score=71.16 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
...|...++...-.++.++|+.+++++++.. |+ ...+|..+|.++.++++.+.|...|...++..|+.+..|..++
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~---f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSF-PD---FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-Cc---hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 3445566677777899999999999999999 76 9999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAVNNLV 167 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~L~ 167 (401)
..-.+.|+.-.|...+.++.--+|.|...+...-++....+....+.. +..++++ .|.+..... ..+-
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~--------lmakALQecp~sg~LWa---EaI~ 795 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL--------LMAKALQECPSSGLLWA---EAIW 795 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCccchhHH---HHHH
Confidence 999999999999999999999999998888777666666655544333 4444444 343322111 1111
Q ss_pred HhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH--HHHHHhcHHHHHHHHcCCCh
Q psy4703 168 VLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI--TSIIKQGVDILKRLYMSKNE 228 (401)
Q Consensus 168 ~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi--~~i~~~gv~~Lk~l~~s~~d 228 (401)
+..|... + -..+-.|-+.+.|+++.++..-.+ ....+....|+...++-++|
T Consensus 796 le~~~~r------k---Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 796 LEPRPQR------K---TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred hccCccc------c---hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 2122110 0 111111222246888866653333 44566677777776664444
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.69 E-value=0.0023 Score=55.26 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
..+..+++.|...++.|+|.+|+..++.+....|.. ..+.+.+|.+|++.++|++|+..+++.++++|+++.+-..+
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356788899999999999999999999999988754 67899999999999999999999999999999998876654
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.68 E-value=0.0027 Score=55.12 Aligned_cols=121 Identities=23% Similarity=0.255 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CC
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAA-VYLKQNQNDKVIEDCSKSLEIVP---DD 80 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~-~y~klg~y~~Ai~~~~kAL~ldP---~~ 80 (401)
.+.....+...|......+++..++..+..++... +. ........+. ++...|+++.|+..+.+++..+| ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PD---PDLAEALLALGALYELGDYEEALELYEKALELDPELNEL 166 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CC---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence 44556667777777777777888888888877776 44 2233333344 77788888888888888877666 45
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVT 129 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l~~~~~ 129 (401)
...++.++..+...+++++|+..+.+++...|. .......++..+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 666677777777778888888888888887777 4555666655555544
No 193
>KOG2796|consensus
Probab=97.62 E-value=0.00043 Score=65.22 Aligned_cols=109 Identities=20% Similarity=0.261 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
|.+.......|....+.||-+.|-.+|+..-+... .+-.....+..|.+.+|+-.++|..|...+++.+..||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 66677778899999999999999999985443321 1123467788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
..+.|.|++.+|+..+|++..+.++++.|..
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999974
No 194
>KOG3785|consensus
Probab=97.62 E-value=0.012 Score=57.82 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCC
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--------------EIVP 78 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL--------------~ldP 78 (401)
...|-.+|..|+|++|+..|+-+.+.+ .- .+.++.|+|-|++-+|.|.+|.+...++- +++.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC-CC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 446889999999999999999988866 22 67899999999999999999988766542 1111
Q ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 79 ------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 79 ------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
+...-...+|.++...-.|.+|+..|++++.-+|+...+...++-++..+.-.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 11112233444555555699999999999998888777777777777665444
No 195
>PRK10941 hypothetical protein; Provisional
Probab=97.60 E-value=0.00069 Score=65.05 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
........|+-.+|.+.++|+.|+.+.+..+.++|+++.-+.-||-+|.++|.+..|..+++..++..|+++.+.....+
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999887665544
Q ss_pred HH
Q psy4703 124 LF 125 (401)
Q Consensus 124 l~ 125 (401)
+.
T Consensus 258 l~ 259 (269)
T PRK10941 258 IH 259 (269)
T ss_pred HH
Confidence 43
No 196
>KOG2376|consensus
Probab=97.50 E-value=0.0036 Score=64.84 Aligned_cols=120 Identities=13% Similarity=0.215 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
.+.++..-|.+...|+|++|+..-.+.+... |+ ...+....-.|..+.+.|++|+...++-....-.+.. .|-++
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKA 86 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIV-PD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKA 86 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcC-CC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHH
Confidence 4678888899999999999999999999999 76 7888888889999999999999554443322222222 27889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
-|.+++++.++|+.+++ ..++.+..+...-+++...++.+.++..
T Consensus 87 Yc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald 131 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALD 131 (652)
T ss_pred HHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999998 5566677677878888888877766554
No 197
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.48 E-value=0.0017 Score=54.06 Aligned_cols=98 Identities=21% Similarity=0.302 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcC--CC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTA--EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-------V 77 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-------d 77 (401)
...|...+..|-|++|...|.+|.+... |. .-.++-++..++.++..+|+|++++...+++|.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 4567778889999999999999998864 21 2346677888999999999999999998888865 3
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 78 PD----DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 78 P~----~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
.+ ++.+.+++|.++..+|+.++|+..|+++-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 32 4678899999999999999999999988654
No 198
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.44 E-value=0.00024 Score=45.40 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~ 113 (401)
++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777776664
No 199
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.41 E-value=0.011 Score=51.18 Aligned_cols=106 Identities=31% Similarity=0.445 Sum_probs=89.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Q psy4703 18 SAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-DPKALFRRCQAYEAIGK 96 (401)
Q Consensus 18 ~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~~~lg~ 96 (401)
.+...|+++.|+..|.+++... |........+..++..+...++++.|+..+.+++...+. ...++..++..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 8999999999999999998866 511136677777888889999999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 97 ~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
++.|+..+..++...|........+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 9999999999999999843333333333
No 200
>KOG4340|consensus
Probab=97.41 E-value=0.0026 Score=61.09 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=107.9
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL-------- 74 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL-------- 74 (401)
+.+|++-..+-..|..|+...+|..|.++|++.-.+. |. .....+..|..+++.+.|..|+.......
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~---~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~ 113 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PE---LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSR 113 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hH---HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHH
Confidence 4677777788889999999999999999999999999 65 77777778888888888888877544222
Q ss_pred ----------------------HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703 75 ----------------------EIVP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (401)
Q Consensus 75 ----------------------~ldP--~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~ 130 (401)
+.-| +.+....+.|-+.++.|+|++|++-|+.+++...-++-+...++-++...++
T Consensus 114 ~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q 193 (459)
T KOG4340|consen 114 VLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ 193 (459)
T ss_pred HHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh
Confidence 1124 5677888999999999999999999999999999899888889888888888
Q ss_pred HHHHHH
Q psy4703 131 RMQENE 136 (401)
Q Consensus 131 ~~~a~~ 136 (401)
+..+.+
T Consensus 194 yasALk 199 (459)
T KOG4340|consen 194 YASALK 199 (459)
T ss_pred HHHHHH
Confidence 776655
No 201
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.38 E-value=0.011 Score=64.46 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q psy4703 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKALFRRCQA 90 (401)
Q Consensus 12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~~~~a~a 90 (401)
+......|.+.|++++|...|++... + +...|..+...|.+.|++++|+..|.+..+.. .-+...|..+..+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~---~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPE---K----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC---C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34456677888888888888876422 1 46678888888888888888888888876542 2245677778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHHHHHH
Q psy4703 91 YEAIGKFEEAYTDAKHIHRVE-PTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 91 ~~~lg~~eeA~~~~~kal~l~-P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
+.++|++++|.+.+..+++.. +.|..+...|-..+...+....+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 888888888888888887765 44556666666666666655443
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=0.00018 Score=46.61 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=30.9
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy4703 31 FYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68 (401)
Q Consensus 31 ~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~ 68 (401)
+|++||+++ |+ ++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~-P~---n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELN-PN---NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHC-CC---CHHHHHHHHHHHHHCcCHHhhcC
Confidence 489999999 77 99999999999999999999863
No 203
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.37 E-value=0.00098 Score=47.72 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
..+|.+|.++.++|+|++|..+.+.+++++|+|.++......+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888877766555443
No 204
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.34 E-value=0.0049 Score=67.08 Aligned_cols=123 Identities=13% Similarity=0.030 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKAL 84 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~ 84 (401)
.+...|......|.+.|++++|+..|.+..+..- | +...|..+..+|.+.|++++|.+.+..+++.. +.+...+
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 4567788899999999999999999999876531 4 46678889999999999999999999999886 5677888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
..+...|.+.|++++|...|++..+ | |...+..+-..+...++..++..
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999987653 3 55667777666666666544433
No 205
>KOG0551|consensus
Probab=97.32 E-value=0.0085 Score=58.31 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
..+.-|..-|.-|++.++|..|+..|++.|+..-.+ +..|.+||.|.+.+|+|..|+.++.+++.++|.+..+...
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 477778889999999999999999999999986544 5579999999999999999999999999999999777766
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4703 121 LSRLFAIVTKRMQENE 136 (401)
Q Consensus 121 L~~l~~~~~~~~~a~~ 136 (401)
-+.+...+.....+..
T Consensus 159 ~Akc~~eLe~~~~a~n 174 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVN 174 (390)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 6666666666544433
No 206
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.012 Score=56.59 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK---------------- 72 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k---------------- 72 (401)
.+.-...+......|++.+|...|..+++.. |+ +..+...++.||+..|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAA-PE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3445677889999999999999999999999 76 788889999999999999887765442
Q ss_pred ------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 73 ------------------SLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 73 ------------------AL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
.+..||++..+-+.+|..|...|++++|...+-..+..
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22335556666666666666666666665555544444
No 207
>KOG0376|consensus
Probab=97.28 E-value=0.00055 Score=69.29 Aligned_cols=85 Identities=22% Similarity=0.163 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
..+-+-|..+++-++|+.|+..|.+||+++|+.+..+-+|+.++.+.++|..|+.|+.+|++++|....+...-+.....
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34566788889999999999999999999999999999999999999999999999999999999875554444444444
Q ss_pred HHHHH
Q psy4703 128 VTKRM 132 (401)
Q Consensus 128 ~~~~~ 132 (401)
+.+..
T Consensus 85 l~~~~ 89 (476)
T KOG0376|consen 85 LGEFK 89 (476)
T ss_pred HHHHH
Confidence 44443
No 208
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.16 E-value=0.00074 Score=43.04 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~ 79 (401)
.+|+.+|.+|..+|++++|+.+++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777888888888888888888888888774
No 209
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.15 E-value=0.00098 Score=61.26 Aligned_cols=79 Identities=24% Similarity=0.292 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
...+.+++.||..|-.+|-+.-|.-+|++++.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+-+
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999998765554433
No 210
>PLN03077 Protein ECB2; Provisional
Probab=97.15 E-value=0.013 Score=65.37 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--DDPKA 83 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP--~~~kA 83 (401)
.+...|......|.+.|+.++|+..|++.++..- |+ ...|..+-.++.+.|.+++|...|+...+..+ .+...
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 3455677777888888888888888888776431 43 34455555667788888888888888774322 24567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHH
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTA 162 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 162 (401)
|..+..+|.+.|++++|.+.+++. .+.|+ ..++..|-......+.... .+...+.+++ .|.+.......
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~--------~e~~a~~l~~l~p~~~~~y~ll 697 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVEL--------GELAAQHIFELDPNSVGYYILL 697 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHH--------HHHHHHHHHhhCCCCcchHHHH
Confidence 888888888888888888888764 35554 3444444333332222211 1223444455 44445555555
Q ss_pred HHHHHHhhhcc
Q psy4703 163 VNNLVVLAREM 173 (401)
Q Consensus 163 ~~~L~~l~~~~ 173 (401)
.+.+...|+.+
T Consensus 698 ~n~ya~~g~~~ 708 (857)
T PLN03077 698 CNLYADAGKWD 708 (857)
T ss_pred HHHHHHCCChH
Confidence 55555555543
No 211
>KOG3824|consensus
Probab=97.14 E-value=0.0071 Score=58.30 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=77.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 41 p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
|.+...+.+-.+.|.-..+.|+.++|...|+.|+.++|.++.++...|+....-++.-+|-++|-+|+.++|.|.++..+
T Consensus 110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 33334455556667777789999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHH
Q psy4703 121 LSRLFAIVTKRM 132 (401)
Q Consensus 121 L~~l~~~~~~~~ 132 (401)
-.+.........
T Consensus 190 R~RT~plV~~iD 201 (472)
T KOG3824|consen 190 RARTTPLVSAID 201 (472)
T ss_pred hhccchHHHHHH
Confidence 776665555443
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.07 E-value=0.087 Score=52.46 Aligned_cols=170 Identities=13% Similarity=0.189 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
+...-.+..-+...-.+|+++.|-.+..++-+.. ++ ........++...+..++|..|..-..++++..|.++.++.
T Consensus 115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~--~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr 191 (400)
T COG3071 115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GD--DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR 191 (400)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CC--chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence 3445566777888889999999999999999985 43 25667778999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD-TSAPMDKRVTAV 163 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 163 (401)
-.-++|...|+|.+......+.-+-.-- ++++...-......+-+...... -.....++++..-. .-.+.+.....+
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~-~~~gL~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN-GSEGLKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHhccHHhhcChhHHHHHH
Confidence 9999999999999999888776554332 22322222222221111111100 11223456666555 334455667777
Q ss_pred HHHHHhhhcchhhHHH
Q psy4703 164 NNLVVLAREMSGAEML 179 (401)
Q Consensus 164 ~~L~~l~~~~~gae~~ 179 (401)
..++.++.++++.+.+
T Consensus 271 ~~li~l~~~~~A~~~i 286 (400)
T COG3071 271 ERLIRLGDHDEAQEII 286 (400)
T ss_pred HHHHHcCChHHHHHHH
Confidence 7788888765554433
No 213
>KOG1915|consensus
Probab=97.04 E-value=0.04 Score=56.05 Aligned_cols=124 Identities=13% Similarity=0.102 Sum_probs=105.9
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703 21 KQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99 (401)
Q Consensus 21 ~~g~y~eAi~~y~~Al~l~~p~~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee 99 (401)
...|.+.+-..|+.+|++. |++ =..+.+|...|.--.+..+...|....-.||...|.+ +.+...-..-.++++|+.
T Consensus 378 e~ed~ertr~vyq~~l~lI-PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLI-PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR 455 (677)
T ss_pred HhhhHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence 5678889999999999999 753 3477889999999999999999999999999999965 444445566789999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4703 100 AYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSA 154 (401)
Q Consensus 100 A~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (401)
....|++-++.+|.|..++...+.+...+++..++.. +|..+.+.|.
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa--------ifelAi~qp~ 502 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA--------IFELAISQPA 502 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH--------HHHHHhcCcc
Confidence 9999999999999999999999999999999865544 7888887553
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.03 E-value=0.081 Score=50.01 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCC
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--------QNDKVIEDCSKSLEIVPD 79 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--------~y~~Ai~~~~kAL~ldP~ 79 (401)
.-++....+-.+++.++|++|+...++-+.+. |+++.-.-+++.+|.+++..= --.+|+..+...|..-|+
T Consensus 70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 45678889999999999999999999999999 988889999999999988642 256788999999999997
Q ss_pred CH-----HH------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703 80 DP-----KA------------LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (401)
Q Consensus 80 ~~-----kA------------~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~ 130 (401)
.. +. =...|+.|.+-|.|..|+.-++.+++--|+.+.+.+.|..+......
T Consensus 149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 62 11 12357888999999999999999999988887777776666555443
No 215
>KOG2053|consensus
Probab=97.00 E-value=0.016 Score=62.64 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=93.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy4703 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK 96 (401)
Q Consensus 17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~ 96 (401)
......+++..|+....+.++.. |+ ...+...-|..++++|++++|..+.+..-...+++-..+--+-.+|..+|+
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~-Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKH-PN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHC-CC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 44677889999999999999999 87 666777789999999999999966665555667788888889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 97 FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 97 ~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
+++|...|++++..+|+ .+....+-.++...+.+.+.
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 66666666666666655443
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.049 Score=46.77 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 51 KNRAAVYLKQNQNDKVIEDCSKSLEIVP----------------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 51 ~n~a~~y~klg~y~~Ai~~~~kAL~ldP----------------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
...|......++...++..+.+++.+-. ....++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3345555667788888888888887742 114567778888999999999999999999
Q ss_pred hhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4703 109 RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVF 150 (401)
Q Consensus 109 ~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (401)
.++|-+..++..+.+++...++...+...+......+.+.+.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888766443343333333
No 217
>KOG3081|consensus
Probab=96.94 E-value=0.017 Score=54.68 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 46 RATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 46 ~~~~~~n~a~~y~kl----g~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
.-..+..+|.+|.+. +.+.+|.-.|++.-+..|..+..+...+.|++.+|+|++|...++.++.-++++++...++
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 455666788887764 4689999999999887777889999999999999999999999999999999999888877
Q ss_pred HHHHHHHHH
Q psy4703 122 SRLFAIVTK 130 (401)
Q Consensus 122 ~~l~~~~~~ 130 (401)
-.+....+.
T Consensus 248 iv~a~~~Gk 256 (299)
T KOG3081|consen 248 IVLALHLGK 256 (299)
T ss_pred HHHHHHhCC
Confidence 655554443
No 218
>KOG1941|consensus
Probab=96.91 E-value=0.12 Score=51.22 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP-----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNK--- 115 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~-----kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~--- 115 (401)
.....+|.|++..+.++.+|.+++.++...+.+....+ .++..+|.++..++.|+.+++.|++|+.+..++.
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~ 159 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM 159 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence 34567899999999999999999999999998864433 6788899999999999999999999999865442
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHH
Q psy4703 116 ---AIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 116 ---~~~~~L~~l~~~~~~~~~a~~ 136 (401)
++...|+.++..+++..++..
T Consensus 160 LElqvcv~Lgslf~~l~D~~Kal~ 183 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQLKDYEKALF 183 (518)
T ss_pred eeeehhhhHHHHHHHHHhhhHHhh
Confidence 456678888888888766544
No 219
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.015 Score=52.69 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
.....+..++..|++++|+..++.++... .+......+-.++|.+.+.+|.+++|+...+..-+-+- .+..--.+|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence 34577888899999999999999999776 44456677778899999999999999987765433211 12235568999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 91 YEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 91 ~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
+...|+-++|...|+++++.++++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999988443
No 220
>KOG1915|consensus
Probab=96.87 E-value=0.17 Score=51.71 Aligned_cols=132 Identities=12% Similarity=0.096 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
-+...|...|.--..++++..|-..|.+|+..+ .. +..+|...+.+-++.+....|...+++|+.+-|.--+.|+.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 344556666776778889999999999999999 54 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
.--.-..+|+...|.+.|++=++..|+. +++...-+.....++.. ++..+|++..-
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeie--------raR~IYerfV~ 202 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIE--------RARSIYERFVL 202 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHH--------HHHHHHHHHhe
Confidence 9988999999999999999999999974 45554444444444443 33445666554
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.86 E-value=0.0058 Score=63.48 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=76.4
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
+.-|+.+--+...|..+...|+.++|++.|++++.....-++.....++.+|.|++-+.+|++|..++.+.++.+. +.+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSk 339 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSK 339 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHH
Confidence 3457777778888888888999999999998888543111345667788889999999999999988888888653 444
Q ss_pred H--HHHHHHHHHHcCCH-------HHHHHHHHHHH
Q psy4703 83 A--LFRRCQAYEAIGKF-------EEAYTDAKHIH 108 (401)
Q Consensus 83 A--~~~~a~a~~~lg~~-------eeA~~~~~kal 108 (401)
+ .|..|.|+..+|+. ++|...++++-
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4 35567888888888 55555555443
No 222
>KOG0545|consensus
Probab=96.85 E-value=0.019 Score=53.84 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--------VPD----------DPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l--------dP~----------~~kA~~~~a~a~~~lg~~eeA~~~~~ka 107 (401)
...++...|+-++++|+|.+|...|..||.. .|. ....+.+.++|++..|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3467788999999999999999999998754 233 3456899999999999999999999999
Q ss_pred HhhCCCCccHHHHHHHHHHH
Q psy4703 108 HRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 108 l~l~P~~~~~~~~L~~l~~~ 127 (401)
+..+|.|..+...-++++..
T Consensus 257 L~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HhcCCchHHHHHHHHHHHHh
Confidence 99999997766655554443
No 223
>KOG4507|consensus
Probab=96.80 E-value=0.0025 Score=65.94 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4703 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93 (401)
Q Consensus 14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~ 93 (401)
..|......|+...|+.++..|+... |. ....-..++|.+.++-+-...|-....++|.++...+-.++-+|.+|+.
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~-p~--~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLA-PL--QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA 688 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccC-hh--hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence 33444456899999999999999999 74 2455678999999999999999999999999998888899999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 94 IGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 94 lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
+.+.+.|++.|+.|+.++|+++.+.+.|..+
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999999999999998887655
No 224
>KOG2053|consensus
Probab=96.79 E-value=0.29 Score=53.29 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=114.0
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
+...|+..-+..-.|-.+++.|++++|..+.+ ++...+++ +-..+--+-.||..++++++|...|++++..+|. .
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e 110 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E 110 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence 45678888888888999999999999995555 44444244 5666777899999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCC---CCh
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA-IQPVLSRLFAIVTKRMQENE-QLQNKVHNMFKYVFDTS---APM 156 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~-~~~~L~~l~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~---~~~ 156 (401)
+-++.+=.+|...+.|.+-.+.--+..+.-|+++- .|....-+...+........ ..-..+..|++..+..+ .+.
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 88888889999999998766665555667787753 23333333322221111111 11233455667776644 122
Q ss_pred hHHHHHHHHHHHhhhcchhhHHH
Q psy4703 157 DKRVTAVNNLVVLAREMSGAEML 179 (401)
Q Consensus 157 ~~~~~a~~~L~~l~~~~~gae~~ 179 (401)
.+.......|-.++++.++.+.+
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHH
Confidence 33333334444555554444444
No 225
>KOG1941|consensus
Probab=96.78 E-value=0.009 Score=58.79 Aligned_cols=127 Identities=13% Similarity=0.216 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C---
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----D--- 80 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~----~--- 80 (401)
..+...|+++...+.|+.++++|+.|+.... .+.-..-.++..+|..|-.+.||++|+-+..+|.++-.. +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3455689999999999999999999998762 222345578889999999999999999999999887432 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccH----HHHHHHHHHHHHHHHHHHH
Q psy4703 81 ---PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE--PTNKAI----QPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 81 ---~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~--P~~~~~----~~~L~~l~~~~~~~~~a~~ 136 (401)
.-++|+++.++..+|+.-.|.++++++.++. ..|..+ ...++.++...++.+.+-.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 3468899999999999999999999997763 344333 3456677777776655444
No 226
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.77 E-value=0.0025 Score=39.99 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~ 113 (401)
|++++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666665
No 227
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.74 E-value=0.0068 Score=43.37 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
..++.+|..++++|+|++|..+++.+|+++|+|..|.--..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35778999999999999999999999999999988765443
No 228
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.74 E-value=0.0068 Score=60.57 Aligned_cols=96 Identities=16% Similarity=0.280 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTA-------EES-------HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------p~~-------~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP 78 (401)
...|...+++++|..|+.-|.-|++++. |.. ....-.-..+..||+++++.+-|+...-+.|-++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3456677788888888888888887763 111 11223456789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 79 DDPKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 79 ~~~kA~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
.++.-|++.|.++..+.+|.+|.+.+--+.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876553
No 229
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.74 E-value=0.017 Score=47.73 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=73.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHH
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-----------NDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-----------y~~Ai~~~~kAL~ldP~~~kA 83 (401)
.+..+|.+|++-+|++..+..+... ++......++..-|.+++++.. .-.++++|.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 5778999999999999999999998 6533333667777777765432 345888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
+|.+|.-+-...-|++++.-.+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888887776677788888888887765
No 230
>PLN03077 Protein ECB2; Provisional
Probab=96.71 E-value=0.078 Score=59.18 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHH----------------------------------HHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCL----------------------------------KNRAA 55 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~----------------------------------~n~a~ 55 (401)
..|......+.+.|++++|+..|.+.+....|+ ...+. ..+-.
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd---~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC---HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 345555666777777777777777776543243 21111 12335
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccHHHHH
Q psy4703 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR--VEPTNKAIQPVL 121 (401)
Q Consensus 56 ~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~--l~P~~~~~~~~L 121 (401)
.|.+.|+.++|...|+.. +.+...|..+...|.+.|+.++|+..|++..+ +.|+.......+
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 677778888888877765 45777888888899999999999999988776 456655544444
No 231
>KOG1308|consensus
Probab=96.70 E-value=0.00096 Score=64.98 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=70.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHH
Q psy4703 54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQ 133 (401)
Q Consensus 54 a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~ 133 (401)
|.-.+..|+++.|++.|..+|+++|.....|-.|+.+++++++...|+.+|..+++++|+...-...-+.....++....
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 44455678899999999999999999999999999999999999999999999999999987666666666666666655
Q ss_pred HHH
Q psy4703 134 ENE 136 (401)
Q Consensus 134 a~~ 136 (401)
+.+
T Consensus 201 aa~ 203 (377)
T KOG1308|consen 201 AAH 203 (377)
T ss_pred HHH
Confidence 444
No 232
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.67 E-value=0.091 Score=58.71 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESH--ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------DP 81 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~--~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~------~~ 81 (401)
......|..++..|++++|..++.+++... |... ....++..+|.++...|++++|...+.+++..... ..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 344557888899999999999999999866 4311 13456778999999999999999999999876432 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
.++..+|.++...|++++|...+++++.+
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999886
No 233
>KOG2610|consensus
Probab=96.66 E-value=0.011 Score=57.69 Aligned_cols=102 Identities=15% Similarity=0.034 Sum_probs=58.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-TAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l-~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
..|.+..+++-.-..+|-.|+...-...+.+.+.. + |+.|....+.-..+-++...|-|++|.....++++++|.+..
T Consensus 132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW 210 (491)
T ss_pred hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH
Confidence 34444445555555555555555555555555544 3 443444455555566666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKH 106 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~k 106 (401)
+....+.++...|++.++.+...+
T Consensus 211 a~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666666666666655443
No 234
>KOG4507|consensus
Probab=96.65 E-value=0.04 Score=57.34 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=90.2
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
+.+|.++.-+...+-..-.+|+..+|+.+|..++... |++. .-..+..+|.++.++|...+|--....|++-.|....
T Consensus 207 q~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-~~h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~ 284 (886)
T KOG4507|consen 207 QKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFS-SRHN-KDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS 284 (886)
T ss_pred hcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC-Cccc-ccchhhhHHHHHHHcccccchhheeehhccCCccccc
Confidence 4555555444444444456899999999999999999 5422 3345677999999999999999888888888887777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
-++.+|+++..++.|...+.+|..+.+.+|.-
T Consensus 285 n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 285 NYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred cceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 79999999999999999999999999999965
No 235
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.61 E-value=0.03 Score=44.64 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHH
Q psy4703 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN--KAIQPVLSRLFAIVTK 130 (401)
Q Consensus 66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~--~~~~~~L~~l~~~~~~ 130 (401)
.+..+++.++.+|++..+.+.+|..+...|++++|+..+-.+++.+|+. ..+...+-.+...++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4677889999999999999999999999999999999999999998865 5555555555555544
No 236
>KOG2471|consensus
Probab=96.59 E-value=0.0054 Score=62.31 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhcCCC----C-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h---
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKA-LKVTAEE----S-HERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-I--- 76 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~A-l~l~~p~----~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-l--- 76 (401)
+++..+.-+.+.++..|+|..|...+... |... |. + -....+|.|+|-++++++.|.-++.+|.+||+ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~-~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKE-AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccc-cCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999887653 2222 22 0 12345678999999999999999999999996 1
Q ss_pred -----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 77 -----VP---------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 77 -----dP---------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
.| .....+|+.|..|+..|+.-.|.++|.++.+..-.||.+|..++.+.....+.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK 385 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 11 34678999999999999999999999999999999999999998877655443
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.59 E-value=0.043 Score=53.01 Aligned_cols=115 Identities=11% Similarity=0.029 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLK-QNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k-lg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~ 89 (401)
.|....+..-+.+..+.|-..|.+|.+.. + ....+|...|..-+. .++.+.|...|+.+++..|.+...|.....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~---~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-R---CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C---S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45666777777777999999999998544 3 366788888888666 567777999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHH
Q psy4703 90 AYEAIGKFEEAYTDAKHIHRVEPTNK---AIQPVLSRLFAIVT 129 (401)
Q Consensus 90 a~~~lg~~eeA~~~~~kal~l~P~~~---~~~~~L~~l~~~~~ 129 (401)
.+..+|+.+.|...|++++..-|.+. .++...-+.....+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998877654 34444444443333
No 238
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.56 E-value=0.0036 Score=37.58 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P 112 (401)
+++++|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 239
>KOG4340|consensus
Probab=96.52 E-value=0.028 Score=54.21 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=76.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy4703 19 AFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE 98 (401)
Q Consensus 19 ~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~e 98 (401)
+.+..+|.+||++..--.+.. |. +...+..+|.||+...+|..|..+|++.-.+.|...+..+..++.+.+.+.|.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 467788999999999888888 65 67778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4703 99 EAYTDAKHI 107 (401)
Q Consensus 99 eA~~~~~ka 107 (401)
+|+......
T Consensus 96 DALrV~~~~ 104 (459)
T KOG4340|consen 96 DALRVAFLL 104 (459)
T ss_pred HHHHHHHHh
Confidence 999876554
No 240
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.49 E-value=0.056 Score=60.41 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-------- 79 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p--~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-------- 79 (401)
..+...|..+...|++++|...|.+++..... ........+.++|.+++..|++++|...+.+++.+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 45567888899999999999999999987521 11123456788999999999999999999999886321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----ccHHHHHHHHHHHHHHHHHH
Q psy4703 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN-----KAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~-----~~~~~~L~~l~~~~~~~~~a 134 (401)
....+..+|.++...|++++|...+++++.+.... ......++.+....++...+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 23346678999999999999999999998864421 12233344455544444443
No 241
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.48 E-value=0.039 Score=51.28 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhcC---CCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC------CCHH
Q psy4703 19 AFKQGDYETALDFYTKALKVTA---EESHERATCLKNRAAVYLKQNQ-------NDKVIEDCSKSLEIVP------DDPK 82 (401)
Q Consensus 19 ~~~~g~y~eAi~~y~~Al~l~~---p~~~~~~~~~~n~a~~y~klg~-------y~~Ai~~~~kAL~ldP------~~~k 82 (401)
+.....+++|+..|.-|+-... +++...+.++..+|.+|..+++ +.+|+..|.++++... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445678999999988875431 2334578889999999999998 4557777777776553 2367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
.+|.+|.....+|++++|.++|.+++..--.+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 88999999999999999999999999754333
No 242
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.43 E-value=0.0049 Score=36.96 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD 79 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~ 79 (401)
.++.++|.+++.++++++|+.++.++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 36778888888888888888888888888775
No 243
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.40 E-value=0.0056 Score=39.90 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
+|.++|.+|..+|+|++|+..|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666644
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.39 E-value=0.0063 Score=39.65 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 50 LKNRAAVYLKQNQNDKVIEDCSKSL 74 (401)
Q Consensus 50 ~~n~a~~y~klg~y~~Ai~~~~kAL 74 (401)
|.++|.+|.++|+|++|+.+|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.34 E-value=0.0073 Score=37.80 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
+++++|.||.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777888888888888888888888777753
No 246
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.054 Score=51.67 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
....+..|+=..|...++++.|..+.++.+.++|.++.-+.-+|-+|.++|.+..|+++++..++..|+++.+...-.++
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45667778888899999999999999999999999999999999999999999999999999999999988765544333
No 247
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.32 E-value=0.0054 Score=56.88 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=50.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q psy4703 56 VYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKA 116 (401)
Q Consensus 56 ~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~ 116 (401)
...+.++.+.|.+.|++++++-|.+...|+|+|....+.|+++.|.+.|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3446678888888888888888888888888888888888888888888888888887643
No 248
>KOG4814|consensus
Probab=96.31 E-value=0.037 Score=58.08 Aligned_cols=99 Identities=26% Similarity=0.276 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEE---SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~---~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
.+.+.+..+|+..+|..+++.|...+.-. |. ....+....+++.||+++.+.+.|.+++.+|=+.||.++-.-+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 56788999999999999999999999887 53 234678899999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l 110 (401)
-++....|.-++|+....+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 89999999999999998877654
No 249
>KOG3364|consensus
Probab=96.30 E-value=0.04 Score=47.10 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQ---NDKVIEDCSKSLE-IVPD-DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~---y~~Ai~~~~kAL~-ldP~-~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
.....+|+|.++.+..+ -.+.+..++..++ -.|. .-..+|.++..+.++++|+.|+++....++.+|+|+++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 56678899999987654 6678889999986 4453 45678999999999999999999999999999999998876
Q ss_pred HHHHHHHH
Q psy4703 121 LSRLFAIV 128 (401)
Q Consensus 121 L~~l~~~~ 128 (401)
-..+...+
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 65555444
No 250
>KOG2796|consensus
Probab=96.14 E-value=0.11 Score=49.35 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCC--CCHHHHHH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL----EIVP--DDPKALFR 86 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL----~ldP--~~~kA~~~ 86 (401)
+...+.+.-.|.|.-.+..|.+.++.+ | +..+.+...+|.+.++.||-+.|-.+++.+- .++. ...-.+.+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~-~--e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYY-P--EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhC-C--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667778899999999999999998 4 3488999999999999999999999999543 3333 34456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
.+.+|...++|.+|...|.+++..||.++.+..+-+-+.--+++...+.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999888877777766666655444
No 251
>PRK10941 hypothetical protein; Provisional
Probab=96.14 E-value=0.065 Score=51.54 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
.+.+.-..+.+.++|+.|+.+.+..+.+. |+ .+.-+.-||.+|.++|.+..|+.+++.-++..|+++.+-.-+.++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34566678899999999999999999999 77 788889999999999999999999999999999999887666554
Q ss_pred H
Q psy4703 91 Y 91 (401)
Q Consensus 91 ~ 91 (401)
.
T Consensus 259 ~ 259 (269)
T PRK10941 259 H 259 (269)
T ss_pred H
Confidence 3
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.13 E-value=0.089 Score=54.70 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=79.7
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCH
Q psy4703 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKF 97 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----~kA~~~~a~a~~~lg~~ 97 (401)
..+.+.|.+......+.. |+ ..-.++..|..+...|+.++|++.+++++...... .-.++-+|.++.-+.+|
T Consensus 246 ~~~~~~a~~lL~~~~~~y-P~---s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY-PN---SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 456678888899999999 76 78888999999999999999999999998644333 33588999999999999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 98 EEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 98 eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
++|..+|.+..+.+.-++.....+
T Consensus 322 ~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 322 EEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999776655554443
No 253
>KOG3081|consensus
Probab=96.09 E-value=0.27 Score=46.86 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy4703 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAY 101 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~ 101 (401)
.+.+.+|.-+|++.-+..+| .+.+....|.|++.+++|++|....+.+|.-+++++..+.++-.+-..+|.-.++.
T Consensus 186 gek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred chhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 45688999999998886624 57888999999999999999999999999999999999999999999999998877
Q ss_pred HHHH-HHHhhCCCCcc
Q psy4703 102 TDAK-HIHRVEPTNKA 116 (401)
Q Consensus 102 ~~~~-kal~l~P~~~~ 116 (401)
..+- +....+|+++-
T Consensus 262 ~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHhcCCcchH
Confidence 6654 44455666543
No 254
>KOG1070|consensus
Probab=96.01 E-value=0.43 Score=54.42 Aligned_cols=109 Identities=15% Similarity=0.053 Sum_probs=70.9
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703 20 FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99 (401)
Q Consensus 20 ~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee 99 (401)
..-|.-+.-.+.|++|.+.+ . ....|..++-.|.+-+.+++|.+.++..++--....+.|..+|..++..++-+.
T Consensus 1508 n~yG~eesl~kVFeRAcqyc-d----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQYC-D----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HhhCcHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHH
Confidence 33344555666677777776 1 356677777777777777777777777777666666777777777777777777
Q ss_pred HHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHHHH
Q psy4703 100 AYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQ 133 (401)
Q Consensus 100 A~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~~~ 133 (401)
|...+++|++--|. +.++....+++.-..++..+
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 77777777777776 44444445555555444444
No 255
>KOG1586|consensus
Probab=95.99 E-value=0.65 Score=43.53 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD----- 80 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~----- 80 (401)
-++.+..-||.|--..+|..|=..|-++-++.. ....+.+..|.--+.||.+ .+..+|+.+.+++|++-.+-
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH
Confidence 345556667777777888888888888766541 1123456777777777755 59999999999999986432
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 81 -PKALFRRCQAYEAI-GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 81 -~kA~~~~a~a~~~l-g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
++-+.-+|.+|..- .+++.|+.+|+.+-+....+... ..-.++.....++.....++ .++...|+.+..
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-ssANKC~lKvA~yaa~leqY-~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-SSANKCLLKVAQYAAQLEQY-SKAIDIYEQVAR 182 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34466788888754 99999999999998876544322 12223333333333333333 334445555544
No 256
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.88 E-value=1 Score=50.46 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=92.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----N---QNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl----g---~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
..+++....|+.|+..|++...-- |++..-..+.+..|.+.+.. | .+.+|+..|++.-. .|.-|--|...|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 345677789999999999999998 88777888889899888753 2 47777777766433 466677799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~ 132 (401)
.+|..+|+|+|-+++|.-|++..|+.|.+...-..+-..+.+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESL 603 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776665555555543
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.85 E-value=0.99 Score=44.18 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=100.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VP----- 78 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-dP----- 78 (401)
....+..+...+..+.+.|+++.|...+.++.....+.....+.+.+..+......|+..+|+......+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345667888999999999999999999999988762222236678888899999999999999999888871 10
Q ss_pred ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 79 ----------------------------DDPKALFRRCQAYEAI------GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 79 ----------------------------~~~kA~~~~a~a~~~l------g~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
...++++.+|.-...+ +.+++++..|+++++++|+...++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1146677788877778 889999999999999999988888877777
Q ss_pred HHHHHHH
Q psy4703 125 FAIVTKR 131 (401)
Q Consensus 125 ~~~~~~~ 131 (401)
...+-+.
T Consensus 302 ~~~~~~~ 308 (352)
T PF02259_consen 302 NDKLLES 308 (352)
T ss_pred HHHHHHh
Confidence 6665443
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.77 E-value=0.16 Score=45.76 Aligned_cols=99 Identities=19% Similarity=0.077 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--PDDPK---- 82 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--P~~~k---- 82 (401)
...+...|+.|.+.|++++|++.|.++.+-+ .........+++.-.+.+..++|..+....+++-.+- +.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4577899999999999999999999998887 5445577889999999999999999999999986653 23332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
.....|..++..++|.+|...|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 23345677788899999988876553
No 259
>KOG3824|consensus
Probab=95.76 E-value=0.035 Score=53.67 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
+..-...+....+.|+.+.|...|..|+.++ |+ ++.++...|.....-++.-+|-.+|.+||.++|.+.+|+.+|+
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlala-P~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALA-PT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcC-CC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 4444566777889999999999999999999 77 8999999999888888999999999999999999999999988
Q ss_pred HHH
Q psy4703 89 QAY 91 (401)
Q Consensus 89 ~a~ 91 (401)
...
T Consensus 192 RT~ 194 (472)
T KOG3824|consen 192 RTT 194 (472)
T ss_pred ccc
Confidence 643
No 260
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.70 E-value=0.094 Score=40.55 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
.+....+.|..++...+.++|+..++++++.. ++.++...++-.+..+|...|+|.+.+.+.-.=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999998 776778888888999999999999999887665554
No 261
>KOG2047|consensus
Probab=95.69 E-value=1.6 Score=46.42 Aligned_cols=138 Identities=11% Similarity=0.108 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-C-------Ccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE-E-------SHE------RATCLKNRAAVYLKQNQNDKVIEDCSKSL 74 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-~-------~~~------~~~~~~n~a~~y~klg~y~~Ai~~~~kAL 74 (401)
++.|.+-|..-++..+++.|+.+...|..+-.+ . .|. ...+|...+..--..|-++..-..|+++|
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 566777777778888888888888888765421 0 111 23456666666777888999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP--TNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P--~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
++.=..|....+.|..+..-.-|++|.+.|++.+.+-| +-.+++...- .+-.+++....- .++.+.|+.+++
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL--tkfi~rygg~kl---EraRdLFEqaL~ 578 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL--TKFIKRYGGTKL---ERARDLFEQALD 578 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH--HHHHHHhcCCCH---HHHHHHHHHHHh
Confidence 99988999999999999999999999999999998865 3344444332 122222222211 567889999998
No 262
>KOG2610|consensus
Probab=95.67 E-value=0.15 Score=50.03 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHH
Q psy4703 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-VPDD---PKALFRR 87 (401)
Q Consensus 12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-dP~~---~kA~~~~ 87 (401)
....+...+.+|++.+|-..+++.++-. |+ +..++..--.+|+-+|+...-...+++++-. +|+- .-.+-.+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~-Pt---Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDY-PT---DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhC-ch---hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 3345666788999999999999999999 76 6666666777888899999999999999987 5554 4445557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
+..++..|-|++|.+..+++++++|.|.=+...+.-+.+..++..+.
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence 88899999999999999999999999976666666666655554433
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.21 Score=48.23 Aligned_cols=124 Identities=13% Similarity=0.138 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
.-+.-+......|++.+|...+..++..+|++..+...++.+|...|+.+.|...+. ..|.+.......+ +...+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~----~lP~~~~~~~~~~-l~a~i 210 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA----ALPLQAQDKAAHG-LQAQI 210 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH----hCcccchhhHHHH-HHHHH
Confidence 344567778899999999999999999999999999999999999999999887654 4565544333333 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHH
Q psy4703 129 TKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEML 179 (401)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~ 179 (401)
.-..++.. .....+.-.++-..|.+.+.+...+..+...++.+++.+.+
T Consensus 211 ~ll~qaa~--~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 211 ELLEQAAA--TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HHHHHHhc--CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22222111 01123333444457889999999999999999976666555
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.35 E-value=0.2 Score=51.47 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 51 KNRAAVYLKQNQNDKVIEDCSKSLEIVPD--DPKALFRRCQAYEAIGKFEEAYTDAKH 106 (401)
Q Consensus 51 ~n~a~~y~klg~y~~Ai~~~~kAL~ldP~--~~kA~~~~a~a~~~lg~~eeA~~~~~k 106 (401)
..+|.|..++|+.++|++.+...++..|. +...+.++-.+++.++.|.++...+.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34455555555555555555555554442 333455555555555555555544444
No 265
>KOG1586|consensus
Probab=95.35 E-value=2.2 Score=40.12 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-----
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEES---HERATCLKNRAAVYLKQ-NQNDKVIEDCSKSLEIVPD----- 79 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~---~~~~~~~~n~a~~y~kl-g~y~~Ai~~~~kAL~ldP~----- 79 (401)
+-.-+-.+-..|+.++..+|+.++.++|++. .+. ..-+..+..+|..|-.- .++++||.+|+.+-+.-..
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIy-t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIY-TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 3333444455667789999999999999997 320 11234455678777754 8999999999999776432
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703 80 -DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (401)
Q Consensus 80 -~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~ 117 (401)
--+.+...++.-..+|+|.+|+..|++.....-+|+-.
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 23567777888889999999999999988776666443
No 266
>KOG3617|consensus
Probab=95.19 E-value=6.2 Score=43.33 Aligned_cols=269 Identities=17% Similarity=0.159 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhcCCC-------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKA----------LKVTAEE-------SHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~A----------l~l~~p~-------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k 72 (401)
..|++.+..+-.++|-+.|+++|+++ +.-+ |. ...+..+|.--|.-.-..|+.+.|+..|..
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~-p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY-PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC-hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 45777888888889999999998764 2223 21 123456777777777788998888888886
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCccHHHHHHHHH
Q psy4703 73 SLEI---------------------VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVE------PTNKAIQPVLSRLF 125 (401)
Q Consensus 73 AL~l---------------------dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~------P~~~~~~~~L~~l~ 125 (401)
|-.. ...+--|-|.+|+-|...|++-+|+..|.+|-... ..| .....|..+.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nla 1016 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLA 1016 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 6322 34555667777777888888888777776654331 111 1222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHH---HHHHHhhccCchhHHh
Q psy4703 126 AIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAK---QINTLLKCETNEEIYL 202 (401)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~---~L~~ll~~~~~~e~~l 202 (401)
..-+.... -.+-.||+..... ...+..-+...|....+.+.-|...-+. .|..=++..+||.+..
T Consensus 1017 l~s~~~d~------v~aArYyEe~g~~------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1017 LMSGGSDL------VSAARYYEELGGY------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred hhcCchhH------HHHHHHHHHcchh------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 21111110 0112234433320 1122222333344445556555543333 3333333246777743
Q ss_pred hHHHHHHH--HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCC----C
Q psy4703 203 GEEDFITS--IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR----D 276 (401)
Q Consensus 203 A~e~fi~~--i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~----~ 276 (401)
-..+|+.. ..+..|.+|-..= ...-.++||+-.-. . -+.++++.+ .|.+ .
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar-------~~~~AlqlC~~~nv---~---------vtee~aE~m-----Tp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLAR-------EFSGALQLCKNRNV---R---------VTEEFAELM-----TPTKDDMPN 1140 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCC---c---------hhHHHHHhc-----CcCcCCCcc
Confidence 33444422 3667777774411 12345578854321 1 123444432 2322 2
Q ss_pred chhHHhHHhhhhhccCCH-----HHHHhhcCCHHHHHHHHHHHhcC
Q psy4703 277 PDIRRWAAEGLAYLTLDA-----EVKEALIEDKPALAALVDVASSV 317 (401)
Q Consensus 277 ~~~~~~~~eglay~~~~~-----~vke~~~~d~~~l~~l~~~~~~~ 317 (401)
...|++-.|-+|=+-++. ..| .+-.-..-|++|-.++||.
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtK-KfTQAGdKl~AMraLLKSG 1185 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATK-KFTQAGDKLSAMRALLKSG 1185 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHH-HHhhhhhHHHHHHHHHhcC
Confidence 346777777776554431 122 2323344578888888887
No 267
>KOG2396|consensus
Probab=95.12 E-value=0.45 Score=48.94 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q psy4703 26 ETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGK-FEEAYTDA 104 (401)
Q Consensus 26 ~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~-~eeA~~~~ 104 (401)
..-...|+.|.... +. +..+|.+...-..+.+.|.+--..|.++|..+|+++..|..-|.=.+.-+. .+.|...+
T Consensus 88 ~rIv~lyr~at~rf-~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 88 NRIVFLYRRATNRF-NG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHhc-CC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 34556799999888 65 788888877666677779999999999999999999999988887777776 99999999
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703 105 KHIHRVEPTNKAIQPVLSRLFAIVTK 130 (401)
Q Consensus 105 ~kal~l~P~~~~~~~~L~~l~~~~~~ 130 (401)
.++++.+|+++.++...-++.-....
T Consensus 164 lrgLR~npdsp~Lw~eyfrmEL~~~~ 189 (568)
T KOG2396|consen 164 LRGLRFNPDSPKLWKEYFRMELMYAE 189 (568)
T ss_pred HHHhhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999988877665544333
No 268
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.10 E-value=0.035 Score=51.66 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=56.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
....+.|+++.|.+.|.+++.+. |+ ...-|+.+|....+.|+++.|...|++.+++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-p~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-PE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-ch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34577899999999999999999 76 899999999999999999999999999999999763
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.01 E-value=4.3 Score=40.88 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=100.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCc
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----VPDDPKALFRRCQAYEA---IGKFEEAYTDAKHIH-RVEPTNK 115 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l----dP~~~kA~~~~a~a~~~---lg~~eeA~~~~~kal-~l~P~~~ 115 (401)
-..+....++=.+|....+|+.-+...+..-.+ -++.+...+.+|.++.. .|+.++|+..+..++ .-.+.++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 446667788888999999999999888876666 34567778889999998 999999999999954 5566788
Q ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHH
Q psy4703 116 AIQPVLSRLFAIVTKRMQ-ENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEM 178 (401)
Q Consensus 116 ~~~~~L~~l~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~ 178 (401)
++...++++++.+-.... .......++...|.+++...++.-.=.+++..|...|+.......
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHH
Confidence 899999999987744321 122234667789999999666666667777777777775444333
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.95 E-value=0.58 Score=41.31 Aligned_cols=90 Identities=16% Similarity=0.006 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
...-...+.+........++.+++...+...--+. |+ .+.+-..-|..++..|+|.+|+..++.+.+-.|..+-+-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 34445566777777777777777777776655556 65 666777777777788888888888877777777777666
Q ss_pred HHHHHHHHHcCCHH
Q psy4703 85 FRRCQAYEAIGKFE 98 (401)
Q Consensus 85 ~~~a~a~~~lg~~e 98 (401)
--++.|+..+|+.+
T Consensus 82 ALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 82 ALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHcCChH
Confidence 66677777777654
No 271
>KOG1070|consensus
Probab=94.88 E-value=1.1 Score=51.28 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=102.7
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ----NQNDKVIEDCSKSLEIV 77 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl----g~y~~Ai~~~~kAL~ld 77 (401)
+.-+|+++-.|...-.-+...++.+.|....++|+....+. ...=..|+..+|+.+ |.-+.....|++|.+.+
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999865343 222334444444444 34455667777887775
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 78 PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 78 P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
. -...|..+..+|.+-+++++|.+.|+..++-.-+...+|..++...-...+...+.. .+.+++.
T Consensus 1528 d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~--------lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE--------LLKRALK 1592 (1710)
T ss_pred c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH--------HHHHHHh
Confidence 3 357889999999999999999999999998887778888888777666555444433 4555555
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.74 E-value=0.68 Score=47.74 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=84.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhCC-----------
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAV-----YLKQNQNDKVIEDCSKSLEIVP----------- 78 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~-----y~klg~y~~Ai~~~~kAL~ldP----------- 78 (401)
.-..+.+..+.+.-+..-.+|++++ |+ -+.+|.-+|.- -....-|.+|++..+.++..+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~-pd---CAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEIN-PD---CADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhh-hh---hhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3455678889999999999999999 76 77788777653 1122234555555555444321
Q ss_pred -----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHHHHHHHHHH
Q psy4703 79 -----D--DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 79 -----~--~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
. .+-+.+++|.|..++|+.+||++.++..++..|. +..++++|-.++-.++.+.+.+.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0 1445678899999999999999999999998885 45688888887777777655544
No 273
>KOG1585|consensus
Probab=94.65 E-value=4.1 Score=38.61 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--Cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE--SH-ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-----PDD 80 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~-~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-----P~~ 80 (401)
+..|...++.+-...+|+.|-.++.+|++-. .. .+ .-+..|-..+.....+..+.++...|++|..+- |+-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 4455556666777889999999999998654 21 11 244567777777788999999999999998873 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---ccHHHHHHHHHH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN---KAIQPVLSRLFA 126 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~---~~~~~~L~~l~~ 126 (401)
+-.-..++.=.....+.++|++.|++++.+--.+ ..+.+.++++..
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4444555555667788999999999998774443 344444444433
No 274
>KOG1585|consensus
Probab=94.60 E-value=1.1 Score=42.31 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=85.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 41 EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 41 p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
|+-.-.+..|..-+.+|...++|++|-.+..+|.+-..++ +++|-.-|.....+..+.|+...|++|..+.-.+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 5433466788888889999999999999999998654333 4556666666678889999999999998773322
Q ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCh----hHHHHHHHHHHHhhhcchhhHHHhhhhH
Q psy4703 115 ---KAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD---TSAPM----DKRVTAVNNLVVLAREMSGAEMLLKSGV 184 (401)
Q Consensus 115 ---~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~----~~~~~a~~~L~~l~~~~~gae~~~~e~~ 184 (401)
..+...|++....+.... -..+.++|+++.. ..... +..-+..+-|+.+.++.+++..+.++++
T Consensus 105 GspdtAAmaleKAak~lenv~------Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVK------PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 234445555554443321 1335567777665 11111 1222333344455555555555555544
Q ss_pred H
Q psy4703 185 A 185 (401)
Q Consensus 185 v 185 (401)
.
T Consensus 179 ~ 179 (308)
T KOG1585|consen 179 A 179 (308)
T ss_pred H
Confidence 3
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.55 E-value=0.51 Score=46.22 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cC-C----------------------------CCcchHHHHHHHHHHH
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV-TA-E----------------------------ESHERATCLKNRAAVY 57 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l-~~-p----------------------------~~~~~~~~~~n~a~~y 57 (401)
.+....+.+..+...|+..+|+......+.. .. + .....+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999888871 10 0 0133456666677766
Q ss_pred HHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q psy4703 58 LKQ------NQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF-----------------EEAYTDAKHIHRVEPT 113 (401)
Q Consensus 58 ~kl------g~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~-----------------eeA~~~~~kal~l~P~ 113 (401)
... +.+++++..|.++++++|.+.++|+..|..+..+=+. ..|+..|-+++.+.|.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 677 8889999999999999999999999999888765332 2367777777777665
No 276
>KOG3364|consensus
Probab=94.53 E-value=0.42 Score=41.01 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy4703 9 YNKLKESGNSAFKQGD---YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALF 85 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~---y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~ 85 (401)
.+..++.++.+.+..+ -.+-|..++..+....|+ ..-...+.+|..|.++++|++++.+++..|+.+|+|.+|.-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566778888887655 456888899888733143 35667777999999999999999999999999999988754
Q ss_pred H
Q psy4703 86 R 86 (401)
Q Consensus 86 ~ 86 (401)
-
T Consensus 110 L 110 (149)
T KOG3364|consen 110 L 110 (149)
T ss_pred H
Confidence 3
No 277
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.51 E-value=0.8 Score=44.19 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H
Q psy4703 7 NDYNKLKESGNSAFK-QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP---K 82 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~-~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---k 82 (401)
...+.|...|..-+. .++.+.|...|+.+++.. |. +..+|......+...++.+.|...|++++..-|... .
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~---~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~ 108 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PS---DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKK 108 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH
Confidence 356677777887666 677777999999999999 76 788888888889999999999999999999877655 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAI 117 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~ 117 (401)
.|-.....=..-|+.+......+++.++.|.+..+
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 66666777788899999999999999998885443
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.25 E-value=0.52 Score=37.50 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q psy4703 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD--PKALFRRCQAYEAIGKFE 98 (401)
Q Consensus 28 Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~--~kA~~~~a~a~~~lg~~e 98 (401)
.+..++++++.+ |+ +..+.+.+|..++..|+|++|++.+-.++..++++ -.+.-.+=.++..+|.-+
T Consensus 7 ~~~al~~~~a~~-P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAAN-PD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHS-TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcC-CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 456688889999 76 88999999999999999999999999999999876 344444444444444433
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.18 E-value=0.11 Score=33.91 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
.++.++|.+|..+|+|++|+..+.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566666666666666666666666654
No 280
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.92 E-value=1.5 Score=42.05 Aligned_cols=105 Identities=21% Similarity=0.162 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCcchHHH---HHHHHHHHHHcC-------CHHHHHHHHHHH
Q psy4703 8 DYNKLKESGNSAFK----QGDYETALDFYTKALKVTAEESHERATC---LKNRAAVYLKQN-------QNDKVIEDCSKS 73 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~----~g~y~eAi~~y~~Al~l~~p~~~~~~~~---~~n~a~~y~klg-------~y~~Ai~~~~kA 73 (401)
.+...+..|..+.. ..|+.+|..+|.+|.+.. +... .++++.+|..-. +...|+..|.++
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 34566677777776 448888888888888887 3333 777777776531 233788888887
Q ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 74 LEIVPDDPKALFRRCQAYEA----IGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 74 L~ldP~~~kA~~~~a~a~~~----lg~~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
-... ++.+.+++|.+|.. ..++.+|+.+|+++.+... ......++
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 7765 77888888877754 3378888888888887765 44555555
No 281
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.90 E-value=0.28 Score=39.19 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=35.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCC--c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 18 SAFKQGDYETALDFYTKALKVTAEES--H---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 18 ~~~~~g~y~eAi~~y~~Al~l~~p~~--~---~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
...+.|+|.+|++.+.+..+...... . ....+..++|.++...|++++|+..+++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888888888777776652110 0 12344555666666666666666666666655
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.72 E-value=6.9 Score=37.62 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhc----C-----CC-CcchHHHHHHHHHHHHHcCCHHHH---HHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQG-DYETALDFYTKALKVT----A-----EE-SHERATCLKNRAAVYLKQNQNDKV---IEDCSKSL 74 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~----~-----p~-~~~~~~~~~n~a~~y~klg~y~~A---i~~~~kAL 74 (401)
+..+++-|...+..+ +|++|+..+++|.++. + |+ ......++..++.+|+..+.++.. ....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 556789999999999 9999999999999883 1 11 145678888999999998876543 33333344
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703 75 EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (401)
Q Consensus 75 ~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P 112 (401)
.-.|+.+..++-.=.++.+.++.+++.+.+.+.+.--+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44588788776666677778999999999999887544
No 283
>KOG1550|consensus
Probab=93.70 E-value=0.95 Score=48.10 Aligned_cols=106 Identities=21% Similarity=0.224 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHH
Q psy4703 11 KLKESGNSAFKQG-----DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN---QNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 11 ~l~~~Gn~~~~~g-----~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg---~y~~Ai~~~~kAL~ldP~~~k 82 (401)
+....|..|.+.. ++..|+.+|.++..+. ++.+.+++|.+|..-. ++..|..+|..|... .++.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~ 361 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHIL 361 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChH
Confidence 3456777777743 7889999999999999 6778899999998765 678999999988775 5899
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q psy4703 83 ALFRRCQAYEAI----GKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFA 126 (401)
Q Consensus 83 A~~~~a~a~~~l----g~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~ 126 (401)
|.+++|.+|..= -+.+.|..+|+++.+.. ++.+...++.++.
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 999999998643 47899999999999887 4444444444433
No 284
>KOG2471|consensus
Probab=93.68 E-value=0.1 Score=53.31 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-hcC-------CC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALK-VTA-------EE------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~-l~~-------p~------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
.+.+.|-++|+.|.|.-++.+|.+|++ .+. |. ......+.+|.|..|+..|+.-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 356889999999999999999999996 221 21 1336678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy4703 77 VPDDPKALFRRCQAYEA 93 (401)
Q Consensus 77 dP~~~kA~~~~a~a~~~ 93 (401)
.-.+|..|.|+|.|.+.
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 99999999999998864
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.62 E-value=1.3 Score=42.80 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
...++..++..+...++++.++...++.+.++|-+-.+|.++=.+|+..|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999999887654
No 286
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.53 E-value=0.097 Score=42.48 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=78.1
Q ss_pred HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCC-CchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703 212 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 290 (401)
Q Consensus 212 ~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~-~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~ 290 (401)
..++++.|-++++..+..++..++..|+.+... .+.....+.+ |.. +.+-.+|.. .++..+..|+--|..+
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~i----~~l~~~l~~--~~~~v~~~a~~~L~~l 76 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAG--NNDNIQAVVEAGGL----PALVQLLKS--EDEEVVKAALWALRNL 76 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCh----HHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 445788888888877788888888888877753 1222222222 222 333333432 3678999999999999
Q ss_pred cCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcc
Q psy4703 291 TLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVD 335 (401)
Q Consensus 291 ~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~ 335 (401)
+.+.........+..++..|++++.+. +..+.--++ .+|.||+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~-~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNAT-GALSNLA 119 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHH-HHHHHhh
Confidence 988755555545666899999999877 666666666 8888886
No 287
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.40 E-value=14 Score=40.37 Aligned_cols=154 Identities=20% Similarity=0.175 Sum_probs=102.2
Q ss_pred chhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH----------HHHHH-hcHHHHHHHHcCCChhHHHHHHHhhhhc
Q psy4703 173 MSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI----------TSIIK-QGVDILKRLYMSKNENIRVRALVGLCKL 241 (401)
Q Consensus 173 ~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi----------~~i~~-~gv~~Lk~l~~s~~d~i~~ralvgLckl 241 (401)
..-..++.+.+.+..|..+++ ..+.++.+..-.|+ ..+.+ +.++.|.+++.+++..+.--++-.|+-+
T Consensus 280 ~~ve~kM~~~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 280 PRVELKMVNKGIVSLLVKCLD-RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL 358 (708)
T ss_pred hHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 333455556677888999988 67778766544444 33434 4489999999988876655455455555
Q ss_pred cccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCc
Q psy4703 242 GSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKN 321 (401)
Q Consensus 242 ~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~ 321 (401)
.....--. +--..|-.-+|+..+ . ++..+..++--|.=+|.+.+.|..++.- ..+..|++++-+.++..
T Consensus 359 Sfd~~~R~--~mV~~GlIPkLv~LL----~----d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~ 427 (708)
T PF05804_consen 359 SFDPELRS--QMVSLGLIPKLVELL----K----DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEE 427 (708)
T ss_pred CcCHHHHH--HHHHCCCcHHHHHHh----C----CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCcc
Confidence 43211111 111224444555544 2 3456777888899999999999988655 47899999877765666
Q ss_pred chhhhhhhHHhhcccCCc
Q psy4703 322 VWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 322 ~~~~~~~~~~~n~~~~~~ 339 (401)
+.-.++ ..++||+...+
T Consensus 428 v~~eli-aL~iNLa~~~r 444 (708)
T PF05804_consen 428 VQLELI-ALLINLALNKR 444 (708)
T ss_pred ccHHHH-HHHHHHhcCHH
Confidence 667778 89999997666
No 288
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.33 E-value=1.3 Score=53.27 Aligned_cols=202 Identities=17% Similarity=0.200 Sum_probs=124.8
Q ss_pred hhhHHHHHHHHhhccCchhH-HhhH---HHHH--------HHHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCC
Q psy4703 181 KSGVAKQINTLLKCETNEEI-YLGE---EDFI--------TSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSD 248 (401)
Q Consensus 181 ~e~~v~~L~~ll~~~~~~e~-~lA~---e~fi--------~~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d 248 (401)
..+|+..|.++++ +.+++. ..|. .+++ .-+..+|+..|-.++++++..++..+.+.|..+.. ++..
T Consensus 607 ~~ggL~~Lv~LL~-sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~-~~~~ 684 (2102)
T PLN03200 607 ANDALRTLIQLLS-SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR-SIKE 684 (2102)
T ss_pred ccccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCH
Confidence 3578999999998 545544 3342 3333 23466889999999999999998888888877775 3333
Q ss_pred CCCC-CCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhh
Q psy4703 249 ASIR-PFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQ 327 (401)
Q Consensus 249 ~~~~-~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~ 327 (401)
.... --..|...-|.+ +| ...+.+.+.+|+++|+.+.-++++++++... ..+..|++++++..+..--. .+
T Consensus 685 ~q~~~~v~~GaV~pL~~----LL--~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~-~~I~~Lv~lLr~G~~~~k~~-Aa 756 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIK----LA--KSSSIEVAEQAVCALANLLSDPEVAAEALAE-DIILPLTRVLREGTLEGKRN-AA 756 (2102)
T ss_pred HHHHHHHHcCCHHHHHH----HH--hCCChHHHHHHHHHHHHHHcCchHHHHHHhc-CcHHHHHHHHHhCChHHHHH-HH
Confidence 2111 112233322222 22 3357789999999999999999999998854 55999999999983333333 44
Q ss_pred hhHHhhcccCCcHHHHH-HHhhHhhhhhhhhccCCCccchHHHHHH--HHHHHhccccceehhccCCCCCCCCCC
Q psy4703 328 SDALKDVDKAFDEFMEE-VAKLEKEEAEMLETLYQDEKELADFYSL--LSTLVNGSSSVGMRKKRGLQPYNLPWS 399 (401)
Q Consensus 328 ~~~~~n~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (401)
.++.+|++.+| +.+ |+.|+...+-.. +=-+-|...+.=.. ...| -++..-.|.|+|-+.-.-||.
T Consensus 757 -~AL~~L~~~~~--~~~~~~~~~~~~g~v~--~l~~~L~~~~~~~~~~~~al--~~l~~l~~~~~~~~~~~~~~~ 824 (2102)
T PLN03200 757 -RALAQLLKHFP--VDDVLKDSVQCRGTVL--ALVDLLNSTDLDSSATSEAL--EALALLARTKGGANFSHPPWA 824 (2102)
T ss_pred -HHHHHHHhCCC--hhHHHHHHHHHhCcHH--HHHHHHhcCCcchhhHHHHH--HHHHHHHhhcccCCCCCCchh
Confidence 78999999988 222 556666654211 00011111111111 1111 123334567888888778885
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.25 E-value=0.21 Score=32.62 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
..++.++|.+|..+|+|++|...+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 290
>KOG3617|consensus
Probab=93.15 E-value=16 Score=40.27 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKS----------LEIVP----------DDPKALFRRCQAYEAIGKFEEAYTDA 104 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kA----------L~ldP----------~~~kA~~~~a~a~~~lg~~eeA~~~~ 104 (401)
..-..|++.|.-+...++.+.|+++|+++ |.-+| .+...|...|+-+...|+.+.|+..|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 35567888998888899999999999864 33344 34566777899999999999999999
Q ss_pred HHHHhh---------------------CCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 105 KHIHRV---------------------EPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 105 ~kal~l---------------------~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
..|-.. ...|..+-..|++.++..++..++.+
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 877443 34566777778888888777766655
No 291
>KOG4814|consensus
Probab=93.14 E-value=0.91 Score=48.08 Aligned_cols=79 Identities=18% Similarity=0.073 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPV 120 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~ 120 (401)
..++.|-|.-+++..+|..+++.|...+..-| .+++....++.||+++.+.|.|.+.++.|-+.+|.++-.+..
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 34667789999999999999999999998755 347788889999999999999999999999999998655554
Q ss_pred HHHHH
Q psy4703 121 LSRLF 125 (401)
Q Consensus 121 L~~l~ 125 (401)
.-.+.
T Consensus 434 ~~~~~ 438 (872)
T KOG4814|consen 434 MLQSF 438 (872)
T ss_pred HHHHH
Confidence 44333
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=6.4 Score=36.02 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD-D--PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRL 124 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~-~--~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l 124 (401)
.-..+|..+...+++++|+...+.++....+ + .-+-.|+|.+...+|.+++|+..+..... ++ ...+.+.-+.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 3455788899999999999999999965432 2 33568899999999999999988764321 11 23345566777
Q ss_pred HHHHHHHHHHHH
Q psy4703 125 FAIVTKRMQENE 136 (401)
Q Consensus 125 ~~~~~~~~~a~~ 136 (401)
+...+++..+..
T Consensus 169 ll~kg~k~~Ar~ 180 (207)
T COG2976 169 LLAKGDKQEARA 180 (207)
T ss_pred HHHcCchHHHHH
Confidence 777777766555
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.84 E-value=0.54 Score=37.47 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703 55 AVYLKQNQNDKVIEDCSKSLEIVPD---------DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (401)
Q Consensus 55 ~~y~klg~y~~Ai~~~~kAL~ldP~---------~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P 112 (401)
.-..+.++|..|++.+.+.+..... ...++.++|.++...|++++|+..+++++++-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456789999998888887766321 246789999999999999999999999998754
No 294
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.77 E-value=0.18 Score=33.48 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
..|..+|.+-+..++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888888888888888888888875
No 295
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=2 Score=45.23 Aligned_cols=106 Identities=17% Similarity=0.075 Sum_probs=81.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHH------
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK-SLEIVPDDPKALFRR------ 87 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k-AL~ldP~~~kA~~~~------ 87 (401)
+.......++...++.....++..+ |+ +..++.|++.+....|....++..... +....|++..++..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~-~~---~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVN-PE---NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcC-cc---cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 4555566777777888888888888 65 888899998888887766665555554 888889888887777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 88 CQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 88 a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
|+.+..+|+-.++....+++.++.|.++.+...+.-.
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888888999999999999999999886665544433
No 296
>KOG1550|consensus
Probab=92.45 E-value=3.2 Score=44.17 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh---cCCCCcchHHHHHHHHHHHHHc----C-CHHHHHHHHHHHH
Q psy4703 8 DYNKLKESGNSAFK-----QGDYETALDFYTKALKV---TAEESHERATCLKNRAAVYLKQ----N-QNDKVIEDCSKSL 74 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~-----~g~y~eAi~~y~~Al~l---~~p~~~~~~~~~~n~a~~y~kl----g-~y~~Ai~~~~kAL 74 (401)
++.+....|..++. .+|.+.|+.+|..+... . -. ...+.+.+.+|.+|.+- . ++..|+..+.++-
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~-~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-AT-KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-Hh-hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 34455566666654 46899999999998771 1 00 01455778899999884 3 7888999999988
Q ss_pred HhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4703 75 EIVPDDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFD 151 (401)
Q Consensus 75 ~ldP~~~kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (401)
++. ++.+.+.+|.+|..-. ++..|..+|..|... .+..+...++.++..-.. ...-..++..+|+++.+
T Consensus 321 ~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~g----v~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 321 ELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLG----VERNLELAFAYYKKAAE 392 (552)
T ss_pred hcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCC----cCCCHHHHHHHHHHHHH
Confidence 875 6788999999998776 678999999988754 456677777777664311 11111345557777766
Q ss_pred CC
Q psy4703 152 TS 153 (401)
Q Consensus 152 ~~ 153 (401)
..
T Consensus 393 ~g 394 (552)
T KOG1550|consen 393 KG 394 (552)
T ss_pred cc
Confidence 43
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.41 E-value=2.2 Score=37.22 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
.-...+.+........++.+++.......--+- |+ .+.+-..-|..++..|+|.+|+..++...+-.+..+-+---
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 334444555555555555555555554444444 44 44455555556666666666666666655555555544444
Q ss_pred HHHHHHHcCCH
Q psy4703 87 RCQAYEAIGKF 97 (401)
Q Consensus 87 ~a~a~~~lg~~ 97 (401)
++.|+..+|+.
T Consensus 84 ~A~CL~al~Dp 94 (153)
T TIGR02561 84 LALCLNAKGDA 94 (153)
T ss_pred HHHHHHhcCCh
Confidence 55555555553
No 298
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.40 E-value=14 Score=37.47 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQ 89 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~ 89 (401)
..+...+....-.|+|+.|-..|+..+. + |+ ...--+..+-.....+|+++.|+.+.+.+-+.-|.-+.+..-.=.
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-d-PE--tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-D-PE--TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-C-hH--HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3445667788889999999999987665 3 32 122223333334457899999999999999999999999888888
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q psy4703 90 AYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 90 a~~~lg~~eeA~~~~~kal~ 109 (401)
..+..|+|+.|++..+...+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHhcCChHHHHHHHHHHHH
Confidence 88999999999988766543
No 299
>KOG0530|consensus
Probab=92.29 E-value=4.8 Score=38.51 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=89.9
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-
Q psy4703 21 KQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFE- 98 (401)
Q Consensus 21 ~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~e- 98 (401)
+...-..|+..-..+|.++ |. +..+|..|-.|...++ +..+-+.+.+++++-+|.+...|..|-.+...+|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lN-pA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLN-PA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred ccccCHHHHHHHHHHHHhC-cc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 3455677999999999999 76 8889988888888765 6888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHH
Q psy4703 99 EAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 99 eA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~ 132 (401)
.-+...+.++..|..|--++..-.=+....+...
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 8888999999998888777776555555555443
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.96 E-value=1.2 Score=44.72 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=61.1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------CCCCHHHHHHHHHHHHHc
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI-----------------------------VPDDPKALFRRCQAYEAI 94 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l-----------------------------dP~~~kA~~~~a~a~~~l 94 (401)
|.+...+..++.++..+|++..|.+..++||=. |.....++++....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 568888888888888888888888888877511 112256889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC-CccHHHH
Q psy4703 95 GKFEEAYTDAKHIHRVEPT-NKAIQPV 120 (401)
Q Consensus 95 g~~eeA~~~~~kal~l~P~-~~~~~~~ 120 (401)
|.+.-|.+.++-.+.+||. ||-....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll 143 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLL 143 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 9999999999999999998 6644333
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.86 E-value=7 Score=34.57 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
-...+.....+-+..++.+++...+...--+.|..+..-..-|..+...|+|.+|+..++.+.+-.|..+-+...+.-+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34556677777888899999999999999999999999999999999999999999999999999999998999888888
Q ss_pred HHHHHH
Q psy4703 126 AIVTKR 131 (401)
Q Consensus 126 ~~~~~~ 131 (401)
..+++.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 776653
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=1.1 Score=42.82 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 12 LKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 12 l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
+.+.=+.+...++|+.|..+-.+.+.++ |. ++.-+.-+|.+|.++|.+..|+++++..++..|+++.+-.-+++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~-P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLN-PE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhC-CC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445566888999999999999999999 76 777788899999999999999999999999999998887666544
No 303
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.66 E-value=8.2 Score=39.00 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcC--CC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTA--EE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~--~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
.-...+..|+|+.|++..+...+..- ++ ....+.++...+...+. -+...|..+..+++++.|+.+.+-.--+.+
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAra 272 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARA 272 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 33456778999999999876544321 22 12344555555554443 358889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 91 YEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 91 ~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
++..|+..++-..++.+-+.+|. +.+...+
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY 302 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPH-PDIALLY 302 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence 99999999999999999999885 4444433
No 304
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.23 E-value=2.9 Score=38.76 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcC-CC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy4703 8 DYNKLKESGNSAFKQGD-------YETALDFYTKALKVTA-EE-SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP 78 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~-------y~eAi~~y~~Al~l~~-p~-~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP 78 (401)
.+..+...++.+-..|+ +..|+..|.++++... |. .-....+.+.+|..+.++|++++|+.++.+++....
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35556667777777777 4556666777766552 21 223567888899999999999999999999998754
Q ss_pred CCH-HHHHHHHH
Q psy4703 79 DDP-KALFRRCQ 89 (401)
Q Consensus 79 ~~~-kA~~~~a~ 89 (401)
... ..+..+|+
T Consensus 197 ~s~~~~l~~~AR 208 (214)
T PF09986_consen 197 ASKEPKLKDMAR 208 (214)
T ss_pred CCCcHHHHHHHH
Confidence 333 35555554
No 305
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=5 Score=42.28 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred HcCCHHH-HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703 21 KQGDYET-ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99 (401)
Q Consensus 21 ~~g~y~e-Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee 99 (401)
..+.... ++..|...+.++ |.++......+ +...+..+++...+......++..+|.+..++.++|.+....|....
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~-~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~ 119 (620)
T COG3914 42 NAEGLQALAIYALLLGIAIN-DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFL 119 (620)
T ss_pred cccCchhHHHHHHHccCccC-CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHH
Confidence 3444444 777777777877 65444444444 78888899999999999999999999999999999999999888887
Q ss_pred HHHHHHH-HHhhCCCCccHHHHHHHHHHHHHHHHHH
Q psy4703 100 AYTDAKH-IHRVEPTNKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 100 A~~~~~k-al~l~P~~~~~~~~L~~l~~~~~~~~~a 134 (401)
+...+.. +....|+|.++...+-+.++ +++..+.
T Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~ 154 (620)
T COG3914 120 ALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKL 154 (620)
T ss_pred HHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHH
Confidence 7777666 88999999888887755554 4444433
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.09 E-value=3.2 Score=42.83 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=79.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy4703 16 GNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG 95 (401)
Q Consensus 16 Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg 95 (401)
-......|+.-.|-.-...+++.. |. .+.....++..+..+|+|+.+.++.+-+=.+-..-.++...+-..+.++|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 344567899999999999999988 66 56666678889999999999999888776655555677777778889999
Q ss_pred CHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 96 KFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 96 ~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
++++|+......+.-+-.++++...-
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~ia 397 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVA 397 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeee
Confidence 99999999888876655666554433
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.03 E-value=7 Score=39.27 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=81.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------------------------CCCcchHHHHHHHHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA-------------------------EESHERATCLKNRAAV 56 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~-------------------------p~~~~~~~~~~n~a~~ 56 (401)
|+.+|=++..+...+..+..+|+++.|.++.++|+=... +.+.....+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 467888999999999999999999999999988863210 1123344455556777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q psy4703 57 YLKQNQNDKVIEDCSKSLEIVPD-DPKALFRRCQAY-EAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 57 y~klg~y~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~-~~lg~~eeA~~~~~kal~ 109 (401)
..+.|-|.-|++.|.-.+.+||. |+-+....-..| .+.++|+-=+..++....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 88899999999999999999998 776544444444 677888777766665444
No 308
>PRK09687 putative lyase; Provisional
Probab=91.02 E-value=3 Score=40.36 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhc
Q psy4703 302 EDKPALAALVDVASSVKYKNVWNGTQSDALKDV 334 (401)
Q Consensus 302 ~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~ 334 (401)
.|+..+..|+.++++. +..|-+..+ ..+-++
T Consensus 156 ~~~~ai~~L~~~L~d~-~~~VR~~A~-~aLg~~ 186 (280)
T PRK09687 156 NDEAAIPLLINLLKDP-NGDVRNWAA-FALNSN 186 (280)
T ss_pred CCHHHHHHHHHHhcCC-CHHHHHHHH-HHHhcC
Confidence 3566666666666655 555666666 565555
No 309
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.71 E-value=3.6 Score=34.08 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCccHH
Q psy4703 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDP---KALFRRCQAYEAIGK-----------FEEAYTDAKHIHRVEPTNKAIQ 118 (401)
Q Consensus 53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~---kA~~~~a~a~~~lg~-----------~eeA~~~~~kal~l~P~~~~~~ 118 (401)
+|.-++..|++-+|++..+..+...+++. -.+..-|.++.++.. +-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988776 456666888876654 4568999999999999874444
Q ss_pred HHHHH
Q psy4703 119 PVLSR 123 (401)
Q Consensus 119 ~~L~~ 123 (401)
..+++
T Consensus 82 ~~la~ 86 (111)
T PF04781_consen 82 FELAS 86 (111)
T ss_pred HHHHH
Confidence 44443
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.65 E-value=13 Score=35.77 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=73.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhc---CCC-CcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC------
Q psy4703 19 AFKQGDYETALDFYTKALKVT---AEE-SHERATCLKNRAAVYLKQN-QNDKVIEDCSKSLEI----VP---DD------ 80 (401)
Q Consensus 19 ~~~~g~y~eAi~~y~~Al~l~---~p~-~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kAL~l----dP---~~------ 80 (401)
..+.|+++.|..+|.++-.+. .|+ ....+..++|.|...++.+ +|+.|+.+.++|+++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987654 132 2346788999999999999 999999999999888 22 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCCCccHH
Q psy4703 81 -PKALFRRCQAYEAIGKFEEAYT---DAKHIHRVEPTNKAIQ 118 (401)
Q Consensus 81 -~kA~~~~a~a~~~lg~~eeA~~---~~~kal~l~P~~~~~~ 118 (401)
...+..++.+|...+.++...+ ..+.+-.-.|+.+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 4467788999999888765444 3333334456655555
No 311
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.63 E-value=5.2 Score=41.02 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 54 AAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106 (401)
Q Consensus 54 a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~k 106 (401)
|.-++..|+|.++.-++.-..+++| .+.+|.-+|.+++...+|++|-.++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3446688999999999999999999 999999999999999999999998865
No 312
>KOG1310|consensus
Probab=90.55 E-value=1.4 Score=45.80 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG---KFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg---~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
..-+..-|.-.+-......|+.+|.+++..-|.....|.+++.++++.+ +--.|+.++..|++++|....++..|.+
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 3334444444445566788999999999999999999999999998865 4556899999999999999999999988
Q ss_pred HHHHHHHHHHHHH
Q psy4703 124 LFAIVTKRMQENE 136 (401)
Q Consensus 124 l~~~~~~~~~a~~ 136 (401)
+...++....+..
T Consensus 454 aL~el~r~~eal~ 466 (758)
T KOG1310|consen 454 ALNELTRYLEALS 466 (758)
T ss_pred HHHHHhhHHHhhh
Confidence 8888877755544
No 313
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=0.52 Score=47.15 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=50.9
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHhhhcc-----hhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH
Q psy4703 143 HNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM-----SGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI 208 (401)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~-----~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi 208 (401)
.+||+++.. .+++.+++++|++.|+.+.|+| ++|+..|++ ++..+++|+ ||+.+-+||-|=
T Consensus 4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKE--I~eAYEVLs---D~eKRa~YD~fG 70 (371)
T COG0484 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKE--INEAYEVLS---DPEKRAAYDQFG 70 (371)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH--HHHHHHHhC---CHHHHHHhhccC
Confidence 457999988 7899999999999999999984 578888888 888898888 888866665443
No 314
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.84 E-value=6.5 Score=47.72 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHhhhcchhhHHHhh--hhHHHHHHHHhhccCchhHHhh-H---------HHHHHHH-HHhcHHHHHHH
Q psy4703 156 MDKRVTAVNNLVVLAREMSGAEMLLK--SGVAKQINTLLKCETNEEIYLG-E---------EDFITSI-IKQGVDILKRL 222 (401)
Q Consensus 156 ~~~~~~a~~~L~~l~~~~~gae~~~~--e~~v~~L~~ll~~~~~~e~~lA-~---------e~fi~~i-~~~gv~~Lk~l 222 (401)
.+.+..+...+..+.+.......... .+++..|..++. +.++.+... . ++.-..| ...+++.|-.+
T Consensus 29 ~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~L 107 (2102)
T PLN03200 29 PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSL 107 (2102)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 34445555555555554444333322 345666666665 444444221 1 2222233 45669999999
Q ss_pred HcCCChhHHHHHHHhhhhccccCCCCC-CCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhh
Q psy4703 223 YMSKNENIRVRALVGLCKLGSMGGSDA-SIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEAL 300 (401)
Q Consensus 223 ~~s~~d~i~~ralvgLckl~~~gg~d~-~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~ 300 (401)
+++++.+.+..|...|+.+...+..|. ..+.+ .+|..--|++.++. .+..|.-.++.|+=-|.-++...+-+-..
T Consensus 108 L~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~---gsk~d~~L~~~Av~AL~nLs~~~en~~~~ 184 (2102)
T PLN03200 108 LKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP---GNKQDKVVEGLLTGALRNLCGSTDGFWSA 184 (2102)
T ss_pred HHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhC---CchhhHHHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999887543232 22222 47877778887664 12334334555666666677666655333
Q ss_pred cCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703 301 IEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 301 ~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 339 (401)
+-+...+..|++++++. +....+-.+ .++.|+..+.+
T Consensus 185 IIeaGaVp~LV~LLsS~-d~~lQ~eAa-~aLa~Lass~e 221 (2102)
T PLN03200 185 TLEAGGVDILVKLLSSG-NSDAQANAA-SLLARLMMAFE 221 (2102)
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHH-HHHHHHHcCCh
Confidence 33445666777776655 445555555 55555544433
No 315
>KOG1839|consensus
Probab=89.65 E-value=9.5 Score=43.76 Aligned_cols=148 Identities=12% Similarity=0.100 Sum_probs=109.3
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV- 77 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld- 77 (401)
..+|..+..|...+..+.+.|++++|+..-.+|.-+.. -+++.....|.|++...+..+....|+..+.+++.+.
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 46788899999999999999999999999766655442 1235588899999999999999999999999998763
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 78 -------PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT--------NKAIQPVLSRLFAIVTKRMQENEQLQNKV 142 (401)
Q Consensus 78 -------P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~--------~~~~~~~L~~l~~~~~~~~~a~~~~~~~~ 142 (401)
|.-.-...+++..+..+++++-|+++.+.|+.++-. +......++++...+++...+... .+..
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~-ek~t 1125 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH-EKVT 1125 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH-HhhH
Confidence 444445678899999999999999999999986432 123455566666666666554331 1233
Q ss_pred HHHHHHhhc
Q psy4703 143 HNMFKYVFD 151 (401)
Q Consensus 143 ~~~~~~~~~ 151 (401)
...|...+.
T Consensus 1126 ~~iy~~qlg 1134 (1236)
T KOG1839|consen 1126 YGIYKEQLG 1134 (1236)
T ss_pred HHHHHHhhC
Confidence 445555554
No 316
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.65 E-value=0.58 Score=31.01 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIV 77 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld 77 (401)
.+|..+|.+-+..++|++|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888899999999999999998864
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.49 E-value=1.1 Score=42.33 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
|..+|.+|+.+.|.+...|..+|.++...|+.-+|+.+|-+++-..--.+.+..+|..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555554333334445555444443
No 318
>KOG4224|consensus
Probab=89.40 E-value=5 Score=40.06 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=108.8
Q ss_pred CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH---------HHHH-Hhc---HHHH
Q psy4703 153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI---------TSII-KQG---VDIL 219 (401)
Q Consensus 153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi---------~~i~-~~g---v~~L 219 (401)
..+...+..+...|+-+.+-.+.-..+...|++.-+..+++ ++|+++..=....| +.+. +.+ ++-|
T Consensus 178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 33444455566666666666666666667788888888888 67777621111111 3332 223 6778
Q ss_pred HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHh
Q psy4703 220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEA 299 (401)
Q Consensus 220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~ 299 (401)
-++|.++++.++..|-.+|--+.+. +..-......|+--.|.+..+ +..-+++.- +|=-.--+|+- .--|-
T Consensus 257 v~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llq-----s~~~plila-sVaCIrnisih-plNe~ 327 (550)
T KOG4224|consen 257 VDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQ-----SPMGPLILA-SVACIRNISIH-PLNEV 327 (550)
T ss_pred HHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHh-----CcchhHHHH-HHHHHhhcccc-cCccc
Confidence 8888899999998888777766642 333333344466655655542 222222211 11111112332 23567
Q ss_pred hcCCHHHHHHHHHHHhcCCCCc-chhhhhhhHHhhcccCCc
Q psy4703 300 LIEDKPALAALVDVASSVKYKN-VWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 300 ~~~d~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~ 339 (401)
++-|.-||+-||.+++-. |.. +.-... +++-||.-++.
T Consensus 328 lI~dagfl~pLVrlL~~~-dnEeiqchAv-stLrnLAasse 366 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAG-DNEEIQCHAV-STLRNLAASSE 366 (550)
T ss_pred ceecccchhHHHHHHhcC-CchhhhhhHH-HHHHHHhhhhh
Confidence 899999999999999887 655 666677 99999999887
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.23 E-value=4 Score=41.09 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=71.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHHHHHH
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLK---QNQNDKVIEDCSKS-LEIVPDDPKALFRRC 88 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~~~~~~~~n~a~~y~k---lg~y~~Ai~~~~kA-L~ldP~~~kA~~~~a 88 (401)
.--.|-...+|+.=+...+..-.+ |+ -.....+.+..|.++-+ .|+.++|+..+..+ ....+.++..+.-.|
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~--p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEAL--PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhcc--CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 333455666777666666554333 21 12356667778888888 99999999999994 455678899999999
Q ss_pred HHHHH---------cCCHHHHHHHHHHHHhhCCCC
Q psy4703 89 QAYEA---------IGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 89 ~a~~~---------lg~~eeA~~~~~kal~l~P~~ 114 (401)
.+|-. ...+++|+..|.++++++|+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 99853 235789999999999999753
No 320
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.20 E-value=1.5 Score=33.61 Aligned_cols=72 Identities=28% Similarity=0.349 Sum_probs=51.3
Q ss_pred HHHHHHH-cCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHH
Q psy4703 217 DILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAE 295 (401)
Q Consensus 217 ~~Lk~l~-~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~ 295 (401)
+.|-+.+ +++++.++..++..|+.++.. +.......++ ...++..|+.|+..|+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------------~~~~~L~~~l--~d~~~~vr~~a~~aL~~i----- 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDP----------------EAIPALIELL--KDEDPMVRRAAARALGRI----- 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------------HHHHHHHHHH--TSSSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------------hHHHHHHHHH--cCCCHHHHHHHHHHHHHh-----
Confidence 3444555 688889999888888855431 3455555555 346788999999999988
Q ss_pred HHHhhcCCHHHHHHHHHHHhcC
Q psy4703 296 VKEALIEDKPALAALVDVASSV 317 (401)
Q Consensus 296 vke~~~~d~~~l~~l~~~~~~~ 317 (401)
.++..+..|.+++.+.
T Consensus 59 ------~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDD 74 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-
T ss_pred ------CCHHHHHHHHHHHcCC
Confidence 2677888888888776
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.18 E-value=10 Score=37.35 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=37.6
Q ss_pred ccCChhHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQ------------GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIED 69 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~------------g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~ 69 (401)
+..+|.+.+.|......--.. .-.+.-+..|++|++.+ |+ +..++..+-.++.+..+-++...-
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~---~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PD---SERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345677777666554322111 11233344455555555 43 344444444444444555555555
Q ss_pred HHHHHHhCCCCHHHH
Q psy4703 70 CSKSLEIVPDDPKAL 84 (401)
Q Consensus 70 ~~kAL~ldP~~~kA~ 84 (401)
.++++..+|+++..|
T Consensus 88 we~~l~~~~~~~~LW 102 (321)
T PF08424_consen 88 WEELLFKNPGSPELW 102 (321)
T ss_pred HHHHHHHCCCChHHH
Confidence 555555555554444
No 322
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.12 E-value=0.89 Score=44.33 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFR-RCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~-~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
.++.+|...+.-..+.|-|.+--..|.+++..+|.++..|.. -+-=+..-++++.+...|.++++++|.+|.++...-+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 377888888887788889999999999999999999999877 4555788899999999999999999999999988766
Q ss_pred HHHH
Q psy4703 124 LFAI 127 (401)
Q Consensus 124 l~~~ 127 (401)
+.-.
T Consensus 185 ~El~ 188 (435)
T COG5191 185 MELM 188 (435)
T ss_pred HHHH
Confidence 5443
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.98 E-value=1.7 Score=42.03 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKY 148 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~ 148 (401)
+.+...+..|...|.+.+|++..++++.++|-+.+....|.+++..+++...+.+.+++-+...+..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleae 346 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAE 346 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666666666666666555555444444443333
No 324
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.79 E-value=1.5 Score=41.47 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy4703 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA 93 (401)
Q Consensus 28 Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~ 93 (401)
|..+|.+|+.+. |+ ....|..+|..+...|++=.|+-+|-+++-..-.++.|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~-P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL-PS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH--TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC-CC---CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999999 77 899999999999999999999999999998876678899999888877
No 325
>KOG1914|consensus
Probab=88.69 E-value=25 Score=37.06 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=104.1
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|+.||.+..+|...-..+-.+ .++++-..|++.+... |. .+.+|......-+..++|+.....|.++|.--= +.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~---s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl 86 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PS---SPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL 86 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CC---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence 678999999999888877766 9999999999999999 76 788888888888899999999999998875321 12
Q ss_pred HHH-HHHHHHHHHcCCHHHHHH----HHHHHH---hhCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC
Q psy4703 82 KAL-FRRCQAYEAIGKFEEAYT----DAKHIH---RVEPTNKAIQPVLSRLFAIVTKRMQE-NEQLQNKVHNMFKYVFDT 152 (401)
Q Consensus 82 kA~-~~~a~a~~~lg~~eeA~~----~~~kal---~l~P~~~~~~~~L~~l~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 152 (401)
..| ..+.-+....++...+.. .|+-++ -+++..-.++.......+......+- +++--..+...|++++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 222 112333344444433222 222222 35777777888776666554433332 112225678889999886
Q ss_pred C-CChhHHHHHHHH
Q psy4703 153 S-APMDKRVTAVNN 165 (401)
Q Consensus 153 ~-~~~~~~~~a~~~ 165 (401)
| .+.+...+.+.+
T Consensus 167 Pm~nlEkLW~DY~~ 180 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEA 180 (656)
T ss_pred ccccHHHHHHHHHH
Confidence 5 344554544443
No 326
>KOG0530|consensus
Probab=88.53 E-value=4.3 Score=38.84 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=92.2
Q ss_pred ccCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCC
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQG-DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQND-KVIEDCSKSLEIVPD 79 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g-~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~-~Ai~~~~kAL~ldP~ 79 (401)
|..+|.+-..|.-+-+.+-..+ +..+-+++.++.++-. |. +..+|..|-.+.-.+|++. .-++.+..+|..|..
T Consensus 70 i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pK---NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK 145 (318)
T KOG0530|consen 70 IRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PK---NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK 145 (318)
T ss_pred HHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc
Confidence 4456665555554444443332 4566788888888888 66 9999999999999999988 889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 80 DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 80 ~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
+..||-.|--+....+.|+.-+.+....++.|-.|-.++.
T Consensus 146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999999999999999999999998876655544
No 327
>KOG2300|consensus
Probab=88.44 E-value=12 Score=38.70 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC------
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLE-IVPDD------ 80 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~-ldP~~------ 80 (401)
.+....-.|.....-|.|+.|...|..|+++. ......+-+-.|+|..|+..++-+ ++.++++ +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLSS 440 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcchH
Confidence 35556677888888899999999999999998 554567778889999999977633 3444444 34542
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4703 81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (401)
Q Consensus 81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~ 111 (401)
..++|-.|-..+..+++.||...+.+.+++.
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4568888988999999999999999999876
No 328
>KOG2047|consensus
Probab=88.35 E-value=18 Score=38.84 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=45.2
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEES--HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD 80 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~--~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~ 80 (401)
..||++.+.|..+-. +..|+..+-+..|++|++.-.|.. .....+|...|..|-..|+.+.|...++++++.+=..
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 344555555544333 234455555555555544222311 1233444444444444444444444444444443211
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4703 81 ----PKALFRRCQAYEAIGKFEEAYTDAKHIH 108 (401)
Q Consensus 81 ----~kA~~~~a~a~~~lg~~eeA~~~~~kal 108 (401)
+..|...|..-+.-.+++.|+...++|.
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 2334444444444444444444444444
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.32 E-value=2.5 Score=40.97 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~ka 107 (401)
...++...|..|...|.+.+|++.+.+++.+||-+...+..+-+++..+|+--.|+..|++.
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44556667889999999999999999999999999999999999999999999999998875
No 330
>KOG1077|consensus
Probab=88.28 E-value=9.5 Score=41.18 Aligned_cols=116 Identities=28% Similarity=0.412 Sum_probs=72.1
Q ss_pred HHHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHH-----
Q psy4703 210 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAA----- 284 (401)
Q Consensus 210 ~i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~----- 284 (401)
....+++..|.+++.....+||-.|+-.+|++.+++ + ...++.+=-+..=.-| +...|...||-|+
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~-----s~davK~h~d~Ii~sL-kterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE---F-----SIDAVKKHQDTIINSL-KTERDVSIRRRAVDLLYA 395 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---c-----hHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHH
Confidence 346678888888888888888888888888888752 1 1122211111111111 2345666666554
Q ss_pred ------------hhhhhc-cCCHHHHHhhcCCHHHHH---------------HHHHHHhcCCCCcchhhhhhhHHhhcc
Q psy4703 285 ------------EGLAYL-TLDAEVKEALIEDKPALA---------------ALVDVASSVKYKNVWNGTQSDALKDVD 335 (401)
Q Consensus 285 ------------eglay~-~~~~~vke~~~~d~~~l~---------------~l~~~~~~~~~~~~~~~~~~~~~~n~~ 335 (401)
|-|.|+ |.|+.++|+++---+-|. .|++++..-.+-.+||-++ -|+||=-
T Consensus 396 mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~Rvv-QiVvNne 473 (938)
T KOG1077|consen 396 MCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVV-QIVVNNE 473 (938)
T ss_pred HhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhh-eeEecch
Confidence 567887 489999999865443332 3455554444556999999 8888854
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.18 E-value=28 Score=34.24 Aligned_cols=91 Identities=8% Similarity=0.031 Sum_probs=72.9
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy4703 30 DFYTKALKVTAEESHERATCLKNRAAVYLKQNQ------------NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF 97 (401)
Q Consensus 30 ~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~------------y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ 97 (401)
.-|++.++-+ |+ +..+|..+..-.-.+-. .+.-+..+++||+.+|++...+..+=.+..+..+-
T Consensus 6 ~el~~~v~~~-P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVREN-PH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHHhC-cc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 3467777777 65 77777776655444322 56778899999999999999999888888999999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 98 EEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 98 eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
++..+-+++++..+|++..++..+-..
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999999998887765443
No 332
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.07 E-value=7.4 Score=37.18 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy4703 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLK----QNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~k----lg~y~~Ai~~~~kAL~l 76 (401)
+.+|+..|..+.+.. .+...+++|..|.. ..++.+|..+|++|.+.
T Consensus 93 ~~~A~~~~~~~a~~g------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 93 KTKAADWYRCAAADG------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred HHHHHHHHHHHhhcc------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 444444444433333 44444445554444 22455555555555444
No 333
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.64 E-value=1.9 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTD--AKHIHRVEPT 113 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~--~~kal~l~P~ 113 (401)
.++.+|-.+...|+|++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344455555555555555555 2244444443
No 334
>PRK09687 putative lyase; Provisional
Probab=87.57 E-value=28 Score=33.59 Aligned_cols=239 Identities=13% Similarity=0.101 Sum_probs=129.6
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----HHHHHH
Q psy4703 28 ALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKF----EEAYTD 103 (401)
Q Consensus 28 Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~----eeA~~~ 103 (401)
.++.+...+.-. +......-+.++...|. .++...+.+++ ...++.....-+.++-.+|.- .+++..
T Consensus 24 ~~~~L~~~L~d~------d~~vR~~A~~aL~~~~~-~~~~~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~ 94 (280)
T PRK09687 24 NDDELFRLLDDH------NSLKRISSIRVLQLRGG-QDVFRLAIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNI 94 (280)
T ss_pred cHHHHHHHHhCC------CHHHHHHHHHHHHhcCc-chHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 444455555333 45566666666666664 44555555543 233566666667777888873 467777
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchhhHHHhhhh
Q psy4703 104 AKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSG 183 (401)
Q Consensus 104 ~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~ 183 (401)
+...+.-+|+ +.+...... .++............+.+.+..+.. +.+...|..++..|...+. ..
T Consensus 95 L~~l~~~D~d-~~VR~~A~~---aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~~----------~~ 159 (280)
T PRK09687 95 LNNLALEDKS-ACVRASAIN---ATGHRCKKNPLYSPKIVEQSQITAF-DKSTNVRFAVAFALSVIND----------EA 159 (280)
T ss_pred HHHHHhcCCC-HHHHHHHHH---HHhcccccccccchHHHHHHHHHhh-CCCHHHHHHHHHHHhccCC----------HH
Confidence 7666555554 344332222 2222211000011112222222222 2255666666666644333 23
Q ss_pred HHHHHHHHhhccCchhHHhhHHHHHHHH---HHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchH
Q psy4703 184 VAKQINTLLKCETNEEIYLGEEDFITSI---IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTR 260 (401)
Q Consensus 184 ~v~~L~~ll~~~~~~e~~lA~e~fi~~i---~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~ 260 (401)
++..|..+++ +.++++...--..+-.+ ....++.|-+++...++.||..|+.+|.+++..
T Consensus 160 ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~---------------- 222 (280)
T PRK09687 160 AIPLLINLLK-DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK---------------- 222 (280)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----------------
Confidence 4666677776 55666522211111111 224567788888888889999999999887642
Q ss_pred HHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcc
Q psy4703 261 KLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNV 322 (401)
Q Consensus 261 ~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~ 322 (401)
.-....-+.|. +++.|.-|+|+|.-+ .|+.++..|..++...+|.-+
T Consensus 223 ~av~~Li~~L~----~~~~~~~a~~ALg~i-----------g~~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 223 RVLSVLIKELK----KGTVGDLIIEAAGEL-----------GDKTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred hHHHHHHHHHc----CCchHHHHHHHHHhc-----------CCHhHHHHHHHHHhhCCChhH
Confidence 11222223332 223577799998876 578888899888875545443
No 335
>KOG0686|consensus
Probab=87.50 E-value=3.5 Score=41.62 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV--------PDDP 81 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld--------P~~~ 81 (401)
.++.+.|.-|..-|+.+.|+++|.++-.-+ .........+.|.-.+-.-+|+|..-..+.++|...- .-.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 356678888999999999999999987777 5434566788888888888999999999988887762 1224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAKHI 107 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~ka 107 (401)
+...--|.+.+.+++|..|..+|-.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56666788899999999999988654
No 336
>KOG2062|consensus
Probab=87.25 E-value=9.5 Score=41.39 Aligned_cols=94 Identities=26% Similarity=0.334 Sum_probs=67.5
Q ss_pred HHhcHHHHHHHHcCCChhHHHHHHH--hhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcC--CCCCchhHHhHHhhh
Q psy4703 212 IKQGVDILKRLYMSKNENIRVRALV--GLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN--PARDPDIRRWAAEGL 287 (401)
Q Consensus 212 ~~~gv~~Lk~l~~s~~d~i~~ralv--gLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~--~~~~~~~~~~~~egl 287 (401)
.+..-++++++...+++-+|.--+. +|...|.+ .. ++.|+.|-- +..+.|.||-||.+|
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------------nn----kair~lLh~aVsD~nDDVrRaAVial 579 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------------NN----KAIRRLLHVAVSDVNDDVRRAAVIAL 579 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------------ch----hhHHHhhcccccccchHHHHHHHHHh
Confidence 4456778899998888877763332 44444431 11 345665532 456778999999999
Q ss_pred hhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHh
Q psy4703 288 AYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALK 332 (401)
Q Consensus 288 ay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (401)
.+. |..||+.+-..|++++.+-..-|-||++ +.+-
T Consensus 580 GFV---------l~~dp~~~~s~V~lLses~N~HVRyGaA-~ALG 614 (929)
T KOG2062|consen 580 GFV---------LFRDPEQLPSTVSLLSESYNPHVRYGAA-MALG 614 (929)
T ss_pred eee---------EecChhhchHHHHHHhhhcChhhhhhHH-HHHh
Confidence 999 7779999999999998884456999988 6653
No 337
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.21 E-value=58 Score=36.85 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=88.8
Q ss_pred CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHHHHHHHh---cHHHHHHHHcCCChh
Q psy4703 153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFITSIIKQ---GVDILKRLYMSKNEN 229 (401)
Q Consensus 153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi~~i~~~---gv~~Lk~l~~s~~d~ 229 (401)
+.+...|..+...|..... ...+..++. +.++++..++..-+-.+... .++.|..+++..++.
T Consensus 725 D~d~~VR~~Av~aL~~~~~-------------~~~l~~~l~-D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~ 790 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDD-------------VESVAGAAT-DENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPL 790 (897)
T ss_pred CCCHHHHHHHHHHHhcccC-------------cHHHHHHhc-CCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHH
Confidence 4444556666666554322 122334444 56777766655544333222 257888888888889
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHH
Q psy4703 230 IRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAA 309 (401)
Q Consensus 230 i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~ 309 (401)
+|..|+-.|.+++... .+.......|.. .+...|..|++.|+-+ .+++.+..
T Consensus 791 VR~aA~~aLg~~g~~~---------------~~~~~l~~aL~d--~d~~VR~~Aa~aL~~l-----------~~~~a~~~ 842 (897)
T PRK13800 791 VRAAALAALAELGCPP---------------DDVAAATAALRA--SAWQVRQGAARALAGA-----------AADVAVPA 842 (897)
T ss_pred HHHHHHHHHHhcCCcc---------------hhHHHHHHHhcC--CChHHHHHHHHHHHhc-----------cccchHHH
Confidence 9998888888776420 111223344433 3567899999999754 36777889
Q ss_pred HHHHHhcCCCCcchhhhhhhHHhhc
Q psy4703 310 LVDVASSVKYKNVWNGTQSDALKDV 334 (401)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~n~ 334 (401)
|+.++++. +..|-..++ ..|..+
T Consensus 843 L~~~L~D~-~~~VR~~A~-~aL~~~ 865 (897)
T PRK13800 843 LVEALTDP-HLDVRKAAV-LALTRW 865 (897)
T ss_pred HHHHhcCC-CHHHHHHHH-HHHhcc
Confidence 99999877 788999888 887775
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.05 E-value=2.5 Score=38.74 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHH
Q psy4703 23 GDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----DPKALFRRCQAYEAIGKFE 98 (401)
Q Consensus 23 g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~----~~kA~~~~a~a~~~lg~~e 98 (401)
|+ ++|...|-++-.. |. -..+.+.+.+|.-|. ..+.++|+..+.++|++.+. ++..+..++.++.++|+++
T Consensus 121 ~d-~~A~~~fL~~E~~--~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GD-QEALRRFLQLEGT--PE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred Cc-HHHHHHHHHHcCC--CC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44 5577666654332 21 236888888888776 57789999999999998643 5899999999999999999
Q ss_pred HHHH
Q psy4703 99 EAYT 102 (401)
Q Consensus 99 eA~~ 102 (401)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 9974
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.77 E-value=0.84 Score=27.20 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAK 105 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~ 105 (401)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666665543
No 340
>KOG2041|consensus
Probab=86.71 E-value=17 Score=39.31 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc------HHHHHHHh--hHhhh
Q psy4703 303 DKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD------EFMEEVAK--LEKEE 352 (401)
Q Consensus 303 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~------~~~~~l~~--~~~~~ 352 (401)
+|+-+-.|+.++.-+ +-.||..|-.|.-|-..-. .+|..|+. |+|..
T Consensus 1055 pP~eiySllALaaca---~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk~~ 1109 (1189)
T KOG2041|consen 1055 PPAEIYSLLALAACA---VRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSKNP 1109 (1189)
T ss_pred CHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhccCC
Confidence 788889999998766 5569999777777763322 56666653 45443
No 341
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=86.28 E-value=10 Score=36.23 Aligned_cols=117 Identities=18% Similarity=0.233 Sum_probs=84.0
Q ss_pred HHHH-hcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703 210 SIIK-QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 288 (401)
Q Consensus 210 ~i~~-~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~egla 288 (401)
.|.+ +|++++..++.+.++.++.+|+-.|.-+... +.+... . ..-+.+-|+..+..+ .+.+....+.--|.
T Consensus 49 ~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~---~en~~~---I-k~~i~~Vc~~~~s~~-lns~~Q~agLrlL~ 120 (254)
T PF04826_consen 49 IIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN---DENQEQ---I-KMYIPQVCEETVSSP-LNSEVQLAGLRLLT 120 (254)
T ss_pred HHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC---hhhHHH---H-HHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Confidence 3444 7799999999999999999999988877542 111110 1 123456677666544 35566677888899
Q ss_pred hccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703 289 YLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 289 y~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 339 (401)
-+|+..+..+-++. .+..|+.++.++ +..+-.=++ -+++||+.--.
T Consensus 121 nLtv~~~~~~~l~~---~i~~ll~LL~~G-~~~~k~~vL-k~L~nLS~np~ 166 (254)
T PF04826_consen 121 NLTVTNDYHHMLAN---YIPDLLSLLSSG-SEKTKVQVL-KVLVNLSENPD 166 (254)
T ss_pred ccCCCcchhhhHHh---hHHHHHHHHHcC-ChHHHHHHH-HHHHHhccCHH
Confidence 99999999888854 688889999888 555666677 89999984433
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.07 E-value=20 Score=32.15 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
-...+..+|.-|.+.|+++.|++.|.++.+.... -...+++.-.+.+..++|........++-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999998887542 2567788888999999999999998888765
No 343
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.03 E-value=7 Score=39.82 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAE-----ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-----~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
......+.-.|||..|+...+. |++++. -.+-+..+++..|-||+-+++|.+|+..|+.+|-.--.....+..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3445567789999999988654 333310 0234678889999999999999999999999876422111111222
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCC--CccHHHHHH
Q psy4703 88 CQAY-EAIGKFEEAYTDAKHIHRVEPT--NKAIQPVLS 122 (401)
Q Consensus 88 a~a~-~~lg~~eeA~~~~~kal~l~P~--~~~~~~~L~ 122 (401)
.--+ .-....|.....+--++.+.|. +..+...+.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lk 242 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLK 242 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2112 1234456666667777788886 444544443
No 344
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.73 E-value=3.3 Score=26.97 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q psy4703 49 CLKNRAAVYLKQNQNDKVIED--CSKSLEIVPD 79 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~--~~kAL~ldP~ 79 (401)
.++.+|..+...|+|++|+.. |.-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344556666666666666666 3355555554
No 345
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.26 E-value=8.5 Score=29.31 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=42.4
Q ss_pred hcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhh
Q psy4703 214 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 288 (401)
Q Consensus 214 ~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~egla 288 (401)
..++.|.++++++++.++..|+..|.++|. -+......+++.++ .+...|.+|++-|+
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------------~~~~~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIGD----------------PEAIPALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------------HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 458888889999999999999999998852 23455556666544 35556888998875
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.72 E-value=2.2 Score=44.00 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
..|..+.-....+......|+|+.|.....-+-... .. ...+...+-...+++++|++|.......|.-.-.+++.
T Consensus 318 ~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s---~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 318 NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GT---TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cC---CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence 344444445556777888899999988877665554 22 23344445566789999999999999988877777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 84 LFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 84 ~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
..--+..-..+|-+++|+-.+++.+.++|..
T Consensus 394 ~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 394 LTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred eeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 7666777788999999999999999998853
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.45 E-value=9.4 Score=33.39 Aligned_cols=84 Identities=10% Similarity=-0.052 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 48 TCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 48 ~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
..+.....+.+..++..++.......--+.|+.+....--|..+...|+|++|+..++...+-.|..+-....+..+...
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34555566666789999999998888889999999999999999999999999999999888777777777777777777
Q ss_pred HHHH
Q psy4703 128 VTKR 131 (401)
Q Consensus 128 ~~~~ 131 (401)
+++-
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 6654
No 348
>KOG0529|consensus
Probab=83.42 E-value=44 Score=33.98 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred HHcCCHHH-HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 20 FKQGDYET-ALDFYTKALKVTAEESHERATCLKNRAAVYLKQN------------QNDKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 20 ~~~g~y~e-Ai~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg------------~y~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
-..|.|+. ++..=.+.+..+ |+ ...+|..+-.++.... -.++-+.....++..+|+...+|+.
T Consensus 39 r~~~~yd~e~l~lt~~ll~~n-pe---~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKN-PE---FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred HhccccchHHHHHHHHHHhhC-ch---hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 34555544 566666666777 55 6777766655544322 3556677788899999999999999
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 87 RCQAYEAIGK--FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 87 ~a~a~~~lg~--~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
|..++.+.+. +..-++.++++++.||.|-..+..-+-+...
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~ 157 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ 157 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence 9999998875 5788889999999999998887755444443
No 349
>KOG1464|consensus
Probab=83.41 E-value=34 Score=33.10 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=43.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 59 KQNQNDKVIEDCSKSLEIVPDD----PKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 59 klg~y~~Ai~~~~kAL~ldP~~----~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
+..+.++|+..|.+++++.|.. .+|+-.+-.+++.+++|++-...|++.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4568899999999999998754 578888889999999999988888877653
No 350
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=82.67 E-value=8.7 Score=39.48 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~k 72 (401)
.......|.-+|..|+|.++..+-.-..+++ | .+.+|..+|.|.+...+|.+|..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia-P----S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA-P----SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-C----cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4556677888999999999999999999999 7 588999999999999999999998754
No 351
>KOG2422|consensus
Probab=82.38 E-value=41 Score=35.74 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHhhcCCC--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q psy4703 22 QGDYETALDFYTKALKVTAEE--------SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI----------------- 76 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p~--------~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l----------------- 76 (401)
..-|++|-..|.-|+....|+ +|.+...+...|.+....|+++-|.....++|=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456788888888887776343 5888999999999999999998887777766511
Q ss_pred ----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHH
Q psy4703 77 ----VPD---DPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT-NKAIQPVLSRLFAI 127 (401)
Q Consensus 77 ----dP~---~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~-~~~~~~~L~~l~~~ 127 (401)
.|. +..++|+.=+.+.+-|.+.-|.++++-.+.++|. ||-....+-.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL 389 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL 389 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence 122 2557778888889999999999999999999998 87666555555443
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.33 E-value=11 Score=34.57 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CccHHHHHHHHHHHHHHHHHH
Q psy4703 64 DKVIEDCSKSLEIVP--DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT----NKAIQPVLSRLFAIVTKRMQE 134 (401)
Q Consensus 64 ~~Ai~~~~kAL~ldP--~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~----~~~~~~~L~~l~~~~~~~~~a 134 (401)
++|..-|-++=. .| +++...+.+|..|. ..+-+.|+..+-+++++.+. |+++...|+.++...++...+
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666644322 23 56788888886555 77888999999999988654 367777888887777766543
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.05 E-value=13 Score=28.89 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK---ALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k---A~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
-....|.-++...+.++|+...+++++..++... ++-.+.++|...|+|++++.+.-+-+++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666788899999999999998776544 4556778899999999998876554443
No 354
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.91 E-value=7.2 Score=38.55 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Q psy4703 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--VPDDPKALFRRCQAYEAIGKFEE 99 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l--dP~~~kA~~~~a~a~~~lg~~ee 99 (401)
.-+|..-..+|+-...+. | .+.+-.|++.+.-+..=...++...+...+- -..+.-.+--+|..+.++|+-++
T Consensus 309 dtDW~~I~aLYdaL~~~a-p----SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~e 383 (415)
T COG4941 309 DTDWPAIDALYDALEQAA-P----SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEE 383 (415)
T ss_pred CCChHHHHHHHHHHHHhC-C----CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHH
Confidence 346676666777777777 6 4667788988887777777777777665554 22455677789999999999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 100 AYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 100 A~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
|...|.+++.+.++..+......++
T Consensus 384 Ar~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 384 ARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999998876655554443
No 355
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.70 E-value=4.9 Score=34.77 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 81 PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 81 ~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
......+++..+..|+|.-|......++..+|+|.+++.....++..++..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666666666666666666666666666554
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.68 E-value=24 Score=36.14 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4703 52 NRAAVYLKQNQNDKVIEDCSKSLEIV--------PD-----DP-----KALFRRCQAYEAIGKFEEAYTDAKHIHRVEPT 113 (401)
Q Consensus 52 n~a~~y~klg~y~~Ai~~~~kAL~ld--------P~-----~~-----kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~ 113 (401)
.-|..+++.++|..|+--|..+|++. |. ++ -.--.+..||+.+++.+-|+....+.+-++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 34556667777777777777777663 21 11 11245788999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHHHH
Q psy4703 114 NKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 114 ~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
...-+..-+.+...+.++.++.+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 86666666667777777766655
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.21 E-value=2 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCS 71 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~ 71 (401)
+++++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666677666666543
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.85 E-value=15 Score=34.44 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Q psy4703 55 AVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLS 122 (401)
Q Consensus 55 ~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~ 122 (401)
..+++.+...+|+.....-++-+|.+.....-+-+.|.-.|+|+.|...++-+-+++|++..-...+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 35667788888999888888889988888777888888899999999999988889888765444443
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.84 E-value=4.7 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777763
No 360
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.78 E-value=7.9 Score=29.75 Aligned_cols=10 Identities=10% Similarity=0.398 Sum_probs=3.7
Q ss_pred cCCHHHHHHH
Q psy4703 60 QNQNDKVIED 69 (401)
Q Consensus 60 lg~y~~Ai~~ 69 (401)
.|++.+|+.+
T Consensus 19 ~gr~~eAi~~ 28 (75)
T cd02682 19 EGNAEDAITN 28 (75)
T ss_pred cCCHHHHHHH
Confidence 3333333333
No 361
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.22 E-value=16 Score=30.94 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------hcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALK-------VTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~-------l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
-+-.+...+...|+|++++..-.+++. +.+.+......+.+++|.++-.+|+.++|+..|..+-++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556678889999988877666664 331112456677889999999999999999999998764
No 362
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.04 E-value=4 Score=31.37 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
++..+..++..+=+.|++.+|+.+|++++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556666677777777777777777766654
No 363
>KOG1839|consensus
Probab=79.69 E-value=23 Score=40.87 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI------ 76 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l------ 76 (401)
..+....+.|......|.|.+|.+ ..+++.+.. --++..+..|..++..+.+++++++|+..+.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 456777888999999999998888 444444431 013458999999999999999999999998887544
Q ss_pred -C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHHHHHHHHHHHH
Q psy4703 77 -V-PDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENE 136 (401)
Q Consensus 77 -d-P~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l--------~P~~~~~~~~L~~l~~~~~~~~~a~~ 136 (401)
+ |+...+|-+++...+..++...|...+.++..+ .|.-.....+++.+...+++...+..
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 2 566788999999999999999999999998876 33333344556666555555544433
No 364
>KOG0529|consensus
Probab=79.67 E-value=23 Score=35.99 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC--
Q psy4703 22 QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN--QNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAI-GK-- 96 (401)
Q Consensus 22 ~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg--~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~l-g~-- 96 (401)
....++-+.+-..+++.+ |+ ...+|+.|..+..+.+ ++..-++.|+++++.||.+..+|..|=-+.... ..
T Consensus 88 ~~~ld~eL~~~~~~L~~n-pk---sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVN-PK---SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHhhHHHHHHHHHHHHhC-ch---hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 335677788889999999 76 8999999999999876 478999999999999999988876555444433 33
Q ss_pred -HHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 97 -FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 97 -~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
..+=++...+++.-++.|-.++..-..+...
T Consensus 164 ~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred cchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 5667788888888899887777765555553
No 365
>KOG0890|consensus
Probab=79.38 E-value=1.7e+02 Score=36.32 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PD---- 79 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~---- 79 (401)
+....+-|.+.+....+.|.++.|-.+.-.|.+.. .+.++..+|....+.|+-..|+...++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence 34457888999999999999999999998888887 56789999999999999999999999999765 22
Q ss_pred ------C------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 80 ------D------PKALFRRCQAYEAIGKFE--EAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 80 ------~------~kA~~~~a~a~~~lg~~e--eA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
. .++.+..+.-....++++ +-+..|+.+.++.|....-+..++.-+..+
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 1 223333444444555533 356789999999997666666666444443
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.36 E-value=56 Score=33.05 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhC
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYL--KQNQNDKVIEDCSKSLEIV 77 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~--klg~y~~Ai~~~~kAL~ld 77 (401)
.....++..+|..++|..|...+...++.- |.... ...+..++.+|. ..-+|++|.+.++..+..+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl-~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRL-PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 355678889999999999999999998864 33122 567777777776 4678999999999887753
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.91 E-value=11 Score=35.71 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP------DDPKALFRRCQAYEAIGKFEEAYTDAKHI 107 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP------~~~kA~~~~a~a~~~lg~~eeA~~~~~ka 107 (401)
....+...+|..|+..|+|++|+..++.+...-. -....+..+..|+..+|+.+..+...-+.
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4666777888888888888888888888865532 12456777788888888888877665443
No 368
>KOG0889|consensus
Probab=78.76 E-value=98 Score=39.74 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHH-HHhCCCC--HHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQN-QNDKVIEDCSKS-LEIVPDD--PKAL 84 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg-~y~~Ai~~~~kA-L~ldP~~--~kA~ 84 (401)
|.+...-|..+-+.|-++.++....+.-.+-.-.-.+-..-+..-+.||+... ++..+++.++.. +..-+++ +..+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 55556667777788888888888777655541111122233445577787765 666777766554 3333333 4457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
..+|..+.++|++++|-+.|..|++++-.-+.++.
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~ 2850 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWA 2850 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHH
Confidence 77899999999999999999999998765443333
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.31 E-value=3.6 Score=41.90 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-------H-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 52 NRAAVYLKQNQNDKVIEDCSKS-------L-EIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 52 n~a~~y~klg~y~~Ai~~~~kA-------L-~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
.+..+|.-+|||..|+...+.. . ..-+.++..+|..|-+|+.+++|.+|++.|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999976642 1 11246778899999999999999999999988763
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.19 E-value=11 Score=36.41 Aligned_cols=64 Identities=8% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
...+...+..+...|+++.++..+++.+..+ |- +-..|..+-..|++.|+...|+..|.+.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-cc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4566778889999999999999999999999 64 8889999999999999999999999876553
No 371
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.09 E-value=3.2 Score=40.56 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 5 NMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKN-RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 5 ~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n-~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
-|++...|..-++-..+.|.|.+--..|.++++.. |. +..+|.. -+.-++..++++.+...+.++|.++|++++.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~---nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PL---NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC---CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 45677777778888888999999999999999999 76 8888876 5566778899999999999999999999876
Q ss_pred HH
Q psy4703 84 LF 85 (401)
Q Consensus 84 ~~ 85 (401)
|+
T Consensus 179 w~ 180 (435)
T COG5191 179 WI 180 (435)
T ss_pred HH
Confidence 53
No 372
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.35 E-value=5.9 Score=29.45 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
.+..+...|..+=..|+|++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455566666666777777777777766654
No 373
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=76.29 E-value=52 Score=30.90 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=63.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhcC--CCC------cchHHHHHHHHHHHHHcCCH-HHH-HHHHHHHHHh--CCCCHHH--H
Q psy4703 19 AFKQGDYETALDFYTKALKVTA--EES------HERATCLKNRAAVYLKQNQN-DKV-IEDCSKSLEI--VPDDPKA--L 84 (401)
Q Consensus 19 ~~~~g~y~eAi~~y~~Al~l~~--p~~------~~~~~~~~n~a~~y~klg~y-~~A-i~~~~kAL~l--dP~~~kA--~ 84 (401)
+|..|+|+.|++.-.-||+.+. |++ ...+.-...-+....+.|.. +-. ...+..+..- -|+.+.| |
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4678999999999999999875 331 12223333344444555541 111 1112222111 1444555 4
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 85 FRRCQAYE---------AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 85 ~~~a~a~~---------~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
.-.|..++ ..++...|+..+++|++++|+- .+...+.++...+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~l 224 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRL 224 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHH
Confidence 44455552 4568889999999999999863 4455555554444
No 374
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.21 E-value=34 Score=32.20 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHHHHH
Q psy4703 83 ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTN------KAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 83 A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~------~~~~~~L~~l~~~~~~~~ 132 (401)
..+.+|.-|+.+|+|++|+..|+.+....-.. ..+...+.++...+++..
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 44567888888888888888888886543222 234444555555544443
No 375
>KOG2973|consensus
Probab=76.06 E-value=11 Score=36.98 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=68.4
Q ss_pred HHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHh
Q psy4703 220 KRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEA 299 (401)
Q Consensus 220 k~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~ 299 (401)
-.++++.++.++.-|.-.|..+-. + ..+.+..+|- ++.+....++..+.. .+.|+-.|--+|=++.|.+.
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~--~---~~~~~~~~~~-~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTG--R---GLQSLSKYSE-ALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhccc--c---chhhhccchh-hhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHH
Confidence 345566676665544433333332 2 2445555665 666666666643322 55688889999999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703 300 LIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 300 ~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 339 (401)
|..| |||.++..+-.- ..+..=-.+ +.++|||+--+
T Consensus 79 ll~~--~~k~l~~~~~~p-~~~lad~~c-mlL~NLs~~~~ 114 (353)
T KOG2973|consen 79 LLQD--LLKVLMDMLTDP-QSPLADLIC-MLLSNLSRDDD 114 (353)
T ss_pred HHHH--HHHHHHHHhcCc-ccchHHHHH-HHHHHhccCch
Confidence 9999 999999987644 233333334 88999996544
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.53 E-value=14 Score=32.03 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEE 99 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~ee 99 (401)
......+|...+..|+|.-|++.++.++..+|++..+..-++.+|.++|.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 55667788999999999999999999999999999999999999998876554
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.49 E-value=1.2e+02 Score=32.66 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---------CC-------------CcchHHHHHHHHHHHHHcCCHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTA---------EE-------------SHERATCLKNRAAVYLKQNQNDKVIE 68 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---------p~-------------~~~~~~~~~n~a~~y~klg~y~~Ai~ 68 (401)
.+.--|......|..+.|..++.++++... |. ......+.+..+.+.+-.++|..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 445567777788888788888888876531 00 12244566778888889999999999
Q ss_pred HHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703 69 DCSKSLEIVP---------DDPKALFRRCQAYEAIGKFEEAYTDAK 105 (401)
Q Consensus 69 ~~~kAL~ldP---------~~~kA~~~~a~a~~~lg~~eeA~~~~~ 105 (401)
..+.+..... -.+..++-.|..+...|+.+.|...|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9998876532 247789999999999999999999998
No 378
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=74.52 E-value=57 Score=33.04 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred CChhHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q psy4703 4 NNMNDYNKLKE--SGNSAFKQGDYETALDFYTKALKVTA-EESHERATCLKNRAAVYLK--QNQNDKVIEDCSK 72 (401)
Q Consensus 4 ~~p~~a~~l~~--~Gn~~~~~g~y~eAi~~y~~Al~l~~-p~~~~~~~~~~n~a~~y~k--lg~y~~Ai~~~~k 72 (401)
.+|-.+....+ .+..+|+.++|..|...|.++++... |........+..++.+|.. .-+|++|...+++
T Consensus 123 ~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 123 SDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35555555555 55589999999999999999998862 1223356778888888874 6689999999984
No 379
>KOG2396|consensus
Probab=73.78 E-value=15 Score=38.30 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQ-NDKVIEDCSKSLEIVPDDPKAL 84 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~-y~~Ai~~~~kAL~ldP~~~kA~ 84 (401)
+.+...|..-.+..-+.+.|.+--..|.+++... |+ ++.+|..-|.-.+.-+. .+.|...+.++|..+|+.++.|
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PN---NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 3455556655555666677999999999999999 77 89999988888887775 8999999999999999998764
No 380
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.42 E-value=72 Score=28.96 Aligned_cols=148 Identities=8% Similarity=0.038 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD----DPKALFRRC 88 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~----~~kA~~~~a 88 (401)
+..+..+-..|..++|+..|+..-+-. -. ....-+.+..|.+....|+-..|+.+|+++-.-.|- .--+..+-+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg-~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTG-YG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcC-CC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 444555556666677777776644433 21 222334444566666667777777777766544331 123445555
Q ss_pred HHHHHcCCHHHHHHHHHHHH-hhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q psy4703 89 QAYEAIGKFEEAYTDAKHIH-RVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLV 167 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal-~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 167 (401)
-++...|.|++-..-.+-.- .-+|--..+.+.|+-.....++...+...+...+. --..|.+..+|-+.+..++
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-----Da~aprnirqRAq~mldlI 214 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-----DAQAPRNIRQRAQIMLDLI 214 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-----cccCcHHHHHHHHHHHHHH
Confidence 66666666666544333211 11122234555565555555555555443322211 1113445555555555444
No 381
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.22 E-value=7.6 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
.+..+..+|..+=+.|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555566666666666666666655543
No 382
>KOG0713|consensus
Probab=72.20 E-value=8.9 Score=37.75 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=48.1
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHhhhcc-----hhhHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 143 HNMFKYVFD-TSAPMDKRVTAVNNLVVLAREM-----SGAEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~-----~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
.++|+.+.. .+++.+++.++++.|++.-|+| +.|...|++ ++..+++|+ ||+.+.-|+.
T Consensus 16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~--in~AYEVLs---DpekRk~YD~ 80 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKE--INAAYEVLS---DPEKRKHYDT 80 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH--HHHHHHHhc---CHHHHHHHHh
Confidence 568999988 7889999999999999999984 567777777 888888888 8988444433
No 383
>KOG0546|consensus
Probab=72.08 E-value=2.7 Score=41.62 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQA 90 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a 90 (401)
...+.+...++.+.|..|+..-..+++.+ +. ...+++.++..|+.+.++++|+++...+....|++....-.+..+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~-~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDE-RS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccC-hh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34456667778888888888877788766 44 788999999999999999999999999999999987665555444
Q ss_pred HHHcCCH
Q psy4703 91 YEAIGKF 97 (401)
Q Consensus 91 ~~~lg~~ 97 (401)
-....++
T Consensus 353 ~~~~~~~ 359 (372)
T KOG0546|consen 353 RQKKKQY 359 (372)
T ss_pred hhHHHHH
Confidence 4444433
No 384
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.69 E-value=8.8 Score=29.54 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
+..+..++..+=+.|+|++|+.+|.++++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544
No 385
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.74 E-value=8.5 Score=29.61 Aligned_cols=17 Identities=0% Similarity=0.087 Sum_probs=8.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy4703 59 KQNQNDKVIEDCSKSLE 75 (401)
Q Consensus 59 klg~y~~Ai~~~~kAL~ 75 (401)
+.|+|++|+.+|..+|+
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555544444
No 386
>KOG2581|consensus
Probab=70.72 E-value=64 Score=32.94 Aligned_cols=104 Identities=15% Similarity=0.063 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh--CCCCHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSL--EI--VPDDPKAL 84 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL--~l--dP~~~kA~ 84 (401)
.|+-....+-..|+...--..+..-+.... -+....+.+...+=.+|+..+.|+.|-....++. +. +...+..+
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 344444444455554443333433333221 1112356666777888999999999988877764 11 22446678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
|..|.+..-.++|..|.+++-.|+...|++
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 899999999999999999999999999984
No 387
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=70.72 E-value=9.4 Score=29.04 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~ 39 (401)
.+..+..+|...=..|+|++|+.+|.++++..
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777766543
No 388
>PRK14288 chaperone protein DnaJ; Provisional
Probab=70.55 E-value=9.3 Score=38.50 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=44.9
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ..++.+++.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.||.|
T Consensus 4 dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~--i~~AYevLs---d~~kR~~YD~~ 68 (369)
T PRK14288 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKL--INEAYGVLS---DEKKRALYDRY 68 (369)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHH--HHHHHHHhc---cHHHHHHHHHh
Confidence 57888877 66888899999999999999963 35666666 777777777 77775555543
No 389
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=69.83 E-value=20 Score=34.72 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=59.6
Q ss_pred hcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC---CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhc
Q psy4703 214 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF---ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 290 (401)
Q Consensus 214 ~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~---~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~ 290 (401)
+.+.++.+.++.+++.+++.|+=+++.+-..-|.+.-.... .......+.+...+++... +++.+--|+||+|=+
T Consensus 64 ~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 64 EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 33455666666667888887777777666555533211111 2233467889999998755 778999999999987
Q ss_pred cCCHHHHHhhcCC-HHHHHHHHHH
Q psy4703 291 TLDAEVKEALIED-KPALAALVDV 313 (401)
Q Consensus 291 ~~~~~vke~~~~d-~~~l~~l~~~ 313 (401)
-+-- .+.| +..|++|+-+
T Consensus 142 lL~~-----~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 142 LLSG-----RISDPPKVLSRLLLL 160 (298)
T ss_pred HhcC-----CCCcHHHHHHHHHHH
Confidence 5432 3335 6666666655
No 390
>PRK14296 chaperone protein DnaJ; Provisional
Probab=69.29 E-value=8.8 Score=38.71 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=43.6
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcc----hhhHHHhhhhHHHHHHHHhhccCchhHHhhHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREM----SGAEMLLKSGVAKQINTLLKCETNEEIYLGEE 205 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~----~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e 205 (401)
++|+.+.. ...+.+.+.++++.|+..+|+| .+++..|++ ++..+++|. |++..-.||
T Consensus 5 dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~--i~~AyevLs---D~~KR~~YD 66 (372)
T PRK14296 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVE--INEAADVLL---DKDKRKQYD 66 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHH--HHHHHHHhc---CHHHhhhhh
Confidence 57888876 5677888999999999999997 346667766 777888887 788833343
No 391
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.15 E-value=8.4 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~ 39 (401)
.+..+..+|...=..|+|++|+++|.+|++..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 45555666666666777777777777777665
No 392
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=68.94 E-value=19 Score=36.97 Aligned_cols=108 Identities=17% Similarity=0.314 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-----CCcchHHH--HHHHHHHHH-----Hc--CC-HHHHHHHHH
Q psy4703 7 NDYNKLKESGNSAFKQGDYETALDFYTKALKVTAE-----ESHERATC--LKNRAAVYL-----KQ--NQ-NDKVIEDCS 71 (401)
Q Consensus 7 ~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-----~~~~~~~~--~~n~a~~y~-----kl--g~-y~~Ai~~~~ 71 (401)
.........|..++..|++.+|+..|+..|... | +......+ +..+|.-|. .+ .. -+...++-.
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i-~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSI-PLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-heeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 344555668999999999999999999998875 3 11111111 222222222 11 11 111122222
Q ss_pred HHH---------HhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCc
Q psy4703 72 KSL---------EIVPDDPKALFRRCQAY-EAIGKFEEAYTDAKHIHRVEPTNK 115 (401)
Q Consensus 72 kAL---------~ldP~~~kA~~~~a~a~-~~lg~~eeA~~~~~kal~l~P~~~ 115 (401)
+.+ .+.|.|-..-++.|... ++.++|--|....++.|++.|..+
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 333 33454444444455443 689999999999999999999754
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.60 E-value=8.8 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy4703 51 KNRAAVYLKQNQNDKVIEDCSKSLE 75 (401)
Q Consensus 51 ~n~a~~y~klg~y~~Ai~~~~kAL~ 75 (401)
+++|.+|..+|+++.|....++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999999985
No 394
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=67.32 E-value=3.1 Score=27.44 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhccc
Q psy4703 294 AEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDK 336 (401)
Q Consensus 294 ~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~ 336 (401)
|+.+..++ +...+..|++++++. +..+.--++ .++.||+.
T Consensus 2 ~~~~~~i~-~~g~i~~Lv~ll~~~-~~~v~~~a~-~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIV-EAGGIPPLVQLLKSP-DPEVQEEAA-WALGNLAA 41 (41)
T ss_dssp HHHHHHHH-HTTHHHHHHHHTTSS-SHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHH-HcccHHHHHHHHcCC-CHHHHHHHH-HHHHHHhC
Confidence 55566665 667899999999977 888888888 89999873
No 395
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.25 E-value=11 Score=28.87 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHHh
Q psy4703 95 GKFEEAYTDAKHIHR 109 (401)
Q Consensus 95 g~~eeA~~~~~kal~ 109 (401)
|+|++|+..|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 396
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.15 E-value=1.9e+02 Score=31.17 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q psy4703 8 DYNKLKESGNSAF-KQGDYETALDFYTKALKVTAEESH---ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD---- 79 (401)
Q Consensus 8 ~a~~l~~~Gn~~~-~~g~y~eAi~~y~~Al~l~~p~~~---~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~---- 79 (401)
.+......|..++ ...+++.|..+.++++.+. ..+. ....+.+.++.+|.+.+... |...++++|+.-..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 5677788899988 6789999999999999988 3211 23445566788888888777 99999999987654
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhC--CCCccHHHHH
Q psy4703 80 DPKALFRRCQA--YEAIGKFEEAYTDAKHIHRVE--PTNKAIQPVL 121 (401)
Q Consensus 80 ~~kA~~~~a~a--~~~lg~~eeA~~~~~kal~l~--P~~~~~~~~L 121 (401)
.+.-.|++-++ ++..+++..|+..++....+. +.++.+...+
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 33444444433 333479999999999988876 4565554443
No 397
>KOG0166|consensus
Probab=67.09 E-value=1.7e+02 Score=30.81 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=102.7
Q ss_pred hHHHHHHHHhhccCchhHHhhHHHHHHHH-HHhcHHHHHHHHc-CCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchH
Q psy4703 183 GVAKQINTLLKCETNEEIYLGEEDFITSI-IKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTR 260 (401)
Q Consensus 183 ~~v~~L~~ll~~~~~~e~~lA~e~fi~~i-~~~gv~~Lk~l~~-s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~ 260 (401)
.++..+.+++..+.+|.+ ... ..+-++.|-++++ ..++.++.-|.+.|..+.+ |.++-+...-..|.+-
T Consensus 85 ~a~~~~rkllS~~~~ppi--------~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs-gtse~T~~vv~agavp 155 (514)
T KOG0166|consen 85 TATQAFRKLLSKERNPPI--------DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS-GTSEQTKVVVDAGAVP 155 (514)
T ss_pred HHHHHHHHHHccCCCCCH--------HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc-CchhhccccccCCchH
Confidence 445556666554455666 444 4444888888887 6779999999999998885 4455544444455553
Q ss_pred HHHHHHHhhhcCCCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCC-cchhhhhhhHHhhcccCC-
Q psy4703 261 KLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYK-NVWNGTQSDALKDVDKAF- 338 (401)
Q Consensus 261 ~l~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~n~~~~~- 338 (401)
- +-+.| .+.+.+.+..|+=.|+-.--|...=-.++-+...|.-|+.+.... ++ +.+=-+. -++.|||+.-
T Consensus 156 ~----fi~Ll--~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~-~~~~~lRn~t-W~LsNlcrgk~ 227 (514)
T KOG0166|consen 156 I----FIQLL--SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS-DKLSMLRNAT-WTLSNLCRGKN 227 (514)
T ss_pred H----HHHHh--cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc-cchHHHHHHH-HHHHHHHcCCC
Confidence 3 22222 344567888888889888888888888889999999999998877 43 3444455 7899999887
Q ss_pred c-HHHHHHHh
Q psy4703 339 D-EFMEEVAK 347 (401)
Q Consensus 339 ~-~~~~~l~~ 347 (401)
| |.|.+++.
T Consensus 228 P~P~~~~v~~ 237 (514)
T KOG0166|consen 228 PSPPFDVVAP 237 (514)
T ss_pred CCCcHHHHHH
Confidence 5 66665554
No 398
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=66.75 E-value=13 Score=28.18 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
.+..+...|..+=..|+|++|+.+|.++++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566666666666666666665544
No 399
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=65.04 E-value=13 Score=29.62 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=52.1
Q ss_pred CchhHHhHHhhhhhccCC-HHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703 276 DPDIRRWAAEGLAYLTLD-AEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 276 ~~~~~~~~~eglay~~~~-~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 339 (401)
+++.|..|+-.|+.++.+ ++..+.+++ ...+..|++++.+. +..+....+ .++.|++...|
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~-~~L~~l~~~~~ 81 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAAL-WALRNLAAGPE 81 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHH-HHHHHHccCcH
Confidence 368899999999999987 888888876 48899999999887 778888888 99999998775
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.42 E-value=26 Score=31.46 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4703 63 NDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEP 112 (401)
Q Consensus 63 y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P 112 (401)
.+..++..++.+...| ++..+.+++.++..+|+.++|.+..+++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556667777888888 789999999999999999999999999999999
No 401
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.22 E-value=1.8e+02 Score=30.16 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy4703 17 NSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIE 68 (401)
Q Consensus 17 n~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~ 68 (401)
..+.-+|+++++...... -++. |. .........+.-+.+.|.++.|++
T Consensus 269 k~av~~~d~~~v~~~i~~-~~ll-~~--i~~~~~~~i~~fL~~~G~~e~AL~ 316 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAA-SNLL-PN--IPKDQGQSIARFLEKKGYPELALQ 316 (443)
T ss_dssp HHHHHTT-HHH-----HH-HHTG-GG----HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhh-hhhc-cc--CChhHHHHHHHHHHHCCCHHHHHh
Confidence 344557777776555531 2222 21 112233444444555666666655
No 402
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=64.04 E-value=16 Score=27.62 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~ 39 (401)
.+..+...|...=..|+|++|+.+|..|++..
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34455666666667777777777777766543
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.02 E-value=18 Score=21.40 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy4703 63 NDKVIEDCSKSLEIVPDDPKALFRR 87 (401)
Q Consensus 63 y~~Ai~~~~kAL~ldP~~~kA~~~~ 87 (401)
++.|...|++++...|.++..|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4444444444444444444444433
No 404
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=63.85 E-value=1.9e+02 Score=32.81 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=14.4
Q ss_pred HHHHHHHcCCChhHHHHHHHhhhhcc
Q psy4703 217 DILKRLYMSKNENIRVRALVGLCKLG 242 (401)
Q Consensus 217 ~~Lk~l~~s~~d~i~~ralvgLckl~ 242 (401)
+.|..+++++++.+|..|+..|..++
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~ 712 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALR 712 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 44555555556666665555555544
No 405
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.68 E-value=2e+02 Score=30.42 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
+.+-..+..+-..+-..-.+.-....|+++|++. .+--+|+.++++|... .-++=...+++.++.+-++...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344444444445545556677778999999986 4678999999999988 6677788899999999999888888887
Q ss_pred HHHHHH
Q psy4703 124 LFAIVT 129 (401)
Q Consensus 124 l~~~~~ 129 (401)
.++...
T Consensus 141 ~yEkik 146 (711)
T COG1747 141 KYEKIK 146 (711)
T ss_pred HHHHhc
Confidence 777643
No 406
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.39 E-value=18 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q psy4703 95 GKFEEAYTDAKHIHRVEPTNKAIQPVLSRL 124 (401)
Q Consensus 95 g~~eeA~~~~~kal~l~P~~~~~~~~L~~l 124 (401)
|+++.|...|++++...|.++.++..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 568899999999999999988888776543
No 407
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.13 E-value=1.3e+02 Score=27.46 Aligned_cols=98 Identities=15% Similarity=0.026 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHH
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEES-HERATCLKNRAAVYLKQNQNDKVIEDCSKS-LEIVPDDPKALFRRC 88 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~-~~~~~~~~n~a~~y~klg~y~~Ai~~~~kA-L~ldP~~~kA~~~~a 88 (401)
+....|......|+-..|+..|+++-.-. |-+ ...-.+...-|..++..|.|++...-.+.. -.-+|-...+.--+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALg 174 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHh
Confidence 34455666777777777777777766555 321 122334444455556667777655544332 122344445555567
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q psy4703 89 QAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 89 ~a~~~lg~~eeA~~~~~kal~ 109 (401)
.+-.+.|+|..|...|.....
T Consensus 175 lAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccchHHHHHHHHHHHc
Confidence 777777777777777776554
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.71 E-value=2.8e+02 Score=31.12 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HHHH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV----PDD--PKAL 84 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld----P~~--~kA~ 84 (401)
--.|.....+|+.+.|+.+-+.++..- |. ......++...|.+.+-.|+|.+|..+...+.++. -.+ ..+.
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L-~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQL-PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc-ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 345777888899999999999999887 43 23466788889999999999999999988888773 222 4456
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHH
Q psy4703 85 FRRCQAYEAIG--KFEEAYTDAKH 106 (401)
Q Consensus 85 ~~~a~a~~~lg--~~eeA~~~~~k 106 (401)
+..+.++...| .+.+....|..
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67788888888 34444444433
No 409
>KOG1914|consensus
Probab=60.33 E-value=48 Score=35.02 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=49.2
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 33 TKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 33 ~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
++-|+.+ |. +...|+.+-.-+... -+++....|++.+...|..+.+|.-.....+.-.+|+.-...|.+||.
T Consensus 10 ~~rie~n-P~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEEN-PY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcC-Cc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555 43 677777666655444 777777777777777777777777777777777777777777777664
No 410
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=59.98 E-value=29 Score=21.22 Aligned_cols=29 Identities=24% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy4703 66 VIEDCSKSLEIVPDDPKALFRRCQAYEAI 94 (401)
Q Consensus 66 Ai~~~~kAL~ldP~~~kA~~~~a~a~~~l 94 (401)
.+..+..+|..+|.+..++..|-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46677888888888888887776666544
No 411
>KOG2300|consensus
Probab=59.79 E-value=2.3e+02 Score=29.79 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcC--CC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH-
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTA--EE----SHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP-DDPKAL- 84 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~----~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP-~~~kA~- 84 (401)
-.....-.-.|+|.+|++....+.+.+. |. +...+.+++-+|.-...-+.|+.|...|..|.++-. .+.+|.
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445555678999999999888887763 33 123456677777777778889999999999988643 445554
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4703 85 -FRRCQAYEAIGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 85 -~~~a~a~~~lg~~eeA~~~~~kal~l~P~~ 114 (401)
.++|..|...|+-+.-.+.++ .+.|.|
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld---~i~p~n 434 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALD---LIGPLN 434 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHH---hcCCCC
Confidence 567899999887664443333 356654
No 412
>KOG1463|consensus
Probab=59.42 E-value=1e+02 Score=30.84 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHH
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYLKQNQNDK--VIEDCSKSLEIVPDDPKALFRRC 88 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p--~~~~~~~~~~n~a~~y~klg~y~~--Ai~~~~kAL~ldP~~~kA~~~~a 88 (401)
...|-.+....||..|..||-+|.+-... ++......+..+-.|-.-++..++ ++-....+++.+..+..|+...+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 34566677788999999999999875411 111122333334444444555554 55566678888999999999999
Q ss_pred HHHH--HcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHH
Q psy4703 89 QAYE--AIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKR 131 (401)
Q Consensus 89 ~a~~--~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~ 131 (401)
.++. .+.+|+.|+.+|+.=+.-| +.+...+..++..+-+.
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~lLEk 334 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNLLEK 334 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHHHHH
Confidence 9985 5678999999999877755 45777787777776554
No 413
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.33 E-value=19 Score=27.44 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~ 39 (401)
.+..+..+|...=..|+|++|+.+|.++|+..
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666543
No 414
>PF15469 Sec5: Exocyst complex component Sec5
Probab=59.16 E-value=59 Score=28.94 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=42.0
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhh
Q psy4703 92 EAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAR 171 (401)
Q Consensus 92 ~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 171 (401)
.+.|+|+.++.+|.++..+--+...-...+.++....... ...-...+++++.+.+.+.+........|+.++-
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~i------i~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~ 170 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKI------IEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNV 170 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Confidence 5789999999999999876433211112222222222211 1122345677777777666666666666665543
No 415
>PRK14276 chaperone protein DnaJ; Provisional
Probab=59.08 E-value=18 Score=36.60 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=43.7
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|. +++..|++ ++..+++|. |++..-.|+.|
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~--i~~Ay~vL~---d~~kR~~YD~~ 68 (380)
T PRK14276 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKE--VQEAYETLS---DPQKRAAYDQY 68 (380)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHH--HHHHHHHhc---CHhhhhhHhhc
Confidence 57888877 66777889999999999999973 45666655 777777776 77775555543
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.79 E-value=3.1e+02 Score=30.88 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAE-----ESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDD---- 80 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p-----~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~---- 80 (401)
.-....+..+....+|.+|-....++...-++ .....+.+.--+|.+....|++++|+..++.++..-|.+
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 34456788888999999999998887766522 123455666678889999999999999999999987754
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4703 81 -PKALFRRCQAYEAIGKFEEAYTDAKHIHRVE 111 (401)
Q Consensus 81 -~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~ 111 (401)
..++...|.+..-.|++++|....+.+.++.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4567888999999999999999998888773
No 417
>PRK14279 chaperone protein DnaJ; Provisional
Probab=58.74 E-value=20 Score=36.47 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 143 HNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
.++|+.+.. .+.+.+.+.++++.|+..+|+|. .++..|++ +...+++|. |++.+-.||.|
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vLs---D~~KR~~YD~~ 74 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKA--VSEAHDVLS---DPAKRKEYDET 74 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHH--HHHHHHHhc---chhhhhHHHHh
Confidence 468888877 66778889999999999999964 34566555 777777776 78884444443
No 418
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=58.43 E-value=21 Score=36.65 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=45.0
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHhhhcchhh-HHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 143 HNMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSGA-EMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~ga-e~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
.++|+.+.. ..++.+.+.++++.|+..+|+|... +..|++ ++..+++|. |++..-.|+.|
T Consensus 28 ~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~--i~~AYevLs---D~~kR~~YD~~ 89 (421)
T PTZ00037 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKE--ISRAYEVLS---DPEKRKIYDEY 89 (421)
T ss_pred hhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHH--HHHHHHHhc---cHHHHHHHhhh
Confidence 468999887 6678889999999999999998643 344444 666777776 77776666654
No 419
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.24 E-value=20 Score=27.85 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHhC
Q psy4703 62 QNDKVIEDCSKSLEIV 77 (401)
Q Consensus 62 ~y~~Ai~~~~kAL~ld 77 (401)
.|+.|....++||..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3555556666666555
No 420
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.94 E-value=50 Score=34.20 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Q psy4703 14 ESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI--------VPDDPKALF 85 (401)
Q Consensus 14 ~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l--------dP~~~kA~~ 85 (401)
.+-..+.+.|+.+.|.+. |-+++ ....|..+|...+..|+++-|..+|.++=.. --.+...+-
T Consensus 323 ~rFeLAl~lg~L~~A~~~---a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEI---AKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHHHCT-HHHHHHH---CCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHH
T ss_pred HHhHHHHhcCCHHHHHHH---HHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHH
Confidence 344555667777766433 22222 5668888888888888888888888765222 234455555
Q ss_pred HHHHHHHHcCCHHHHHHH
Q psy4703 86 RRCQAYEAIGKFEEAYTD 103 (401)
Q Consensus 86 ~~a~a~~~lg~~eeA~~~ 103 (401)
.++..-...|++.-|...
T Consensus 394 kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 394 KLAKIAEERGDINIAFQA 411 (443)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH
Confidence 555555555555555443
No 421
>PRK14286 chaperone protein DnaJ; Provisional
Probab=57.09 E-value=22 Score=35.81 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=42.7
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++....||.
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~kR~~YD~ 68 (372)
T PRK14286 5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKE--ATEAYEILR---DPKKRQAYDQ 68 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHH--HHHHHHHhc---cHHHHHHHHH
Confidence 57888877 66778889999999999999865 24555555 777777776 7777444544
No 422
>PTZ00429 beta-adaptin; Provisional
Probab=57.01 E-value=3.1e+02 Score=30.45 Aligned_cols=173 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhH-HhhHHHHH------HHHHHhcHHHHHHHHcC
Q psy4703 153 SAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEI-YLGEEDFI------TSIIKQGVDILKRLYMS 225 (401)
Q Consensus 153 ~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~-~lA~e~fi------~~i~~~gv~~Lk~l~~s 225 (401)
..+...+..++.+++..--.......+ +..+..++. +.+.++ ++.|-... ....--.+.-|.+=+++
T Consensus 43 s~~~~~kk~alKkvIa~mt~G~DvS~L-----F~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d 116 (746)
T PTZ00429 43 GTDSYRKKAAVKRIIANMTMGRDVSYL-----FVDVVKLAP-STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTN 116 (746)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCchHH-----HHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCC
Q ss_pred CChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc-CCHHHHHhhcCCH
Q psy4703 226 KNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT-LDAEVKEALIEDK 304 (401)
Q Consensus 226 ~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~-~~~~vke~~~~d~ 304 (401)
.|+.||..|+=.||.++.. .-.--+....++-+..++ +-.|+.|+=+++-+. ++| +++.+.
T Consensus 117 ~Np~IRaLALRtLs~Ir~~------------~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly~~~p----elv~~~ 178 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVS------------SVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLFHDDM----QLFYQQ 178 (746)
T ss_pred CCHHHHHHHHHHHHcCCcH------------HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhCc----cccccc
Q ss_pred HHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCcHHHHHHHhhHhh
Q psy4703 305 PALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFMEEVAKLEKE 351 (401)
Q Consensus 305 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~ 351 (401)
.++..|.+++.+. +..|.+.++ ..|..+...-|..+.-...+...
T Consensus 179 ~~~~~L~~LL~D~-dp~Vv~nAl-~aL~eI~~~~~~~l~l~~~~~~~ 223 (746)
T PTZ00429 179 DFKKDLVELLNDN-NPVVASNAA-AIVCEVNDYGSEKIESSNEWVNR 223 (746)
T ss_pred chHHHHHHHhcCC-CccHHHHHH-HHHHHHHHhCchhhHHHHHHHHH
No 423
>KOG2114|consensus
Probab=56.85 E-value=53 Score=36.36 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-------------------------CcchHHHHHHHHHHHHHcCCH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-------------------------SHERATCLKNRAAVYLKQNQN 63 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-------------------------~~~~~~~~~n~a~~y~klg~y 63 (401)
++..+..|+.++++|+|++|...|-++|..-.|. .-.+..=-..+-.||.++++-
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcch
Q ss_pred HHHHH-------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 64 DKVIE-------------------------DCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKH 106 (401)
Q Consensus 64 ~~Ai~-------------------------~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~k 106 (401)
++-.+ +++.|.-+.-.+.+--..+-..+..+++|++|+++++.
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc
No 424
>KOG3783|consensus
Probab=56.85 E-value=44 Score=35.10 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=59.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy4703 4 NNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKA 83 (401)
Q Consensus 4 ~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA 83 (401)
..|+.+.-+...+..+...|+-+.|+..++.++... -++.....++-+|.++.-+.+|.+|..++......+ ++..+
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~--~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a 338 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR--MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHA 338 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHH
Confidence 356667777778888888888777888888777722 224567778889999999999999999988887765 45555
Q ss_pred HHH
Q psy4703 84 LFR 86 (401)
Q Consensus 84 ~~~ 86 (401)
+|.
T Consensus 339 ~Y~ 341 (546)
T KOG3783|consen 339 FYT 341 (546)
T ss_pred HHH
Confidence 544
No 425
>KOG4563|consensus
Probab=56.73 E-value=24 Score=35.29 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVT 39 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~ 39 (401)
.+..+...|+.++..++|+.|...|..|..+.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~ 71 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELS 71 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999988877
No 426
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=56.62 E-value=21 Score=27.31 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
+..+..+|...=..|+|++|+.+|..+|+.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444455555555555555555555443
No 427
>PRK14291 chaperone protein DnaJ; Provisional
Probab=56.50 E-value=23 Score=35.85 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ...+.+.+.++++.|+...|+|. .++..|++ ++..+++|. |++..-.|+.|
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~--i~~Ay~vLs---d~~kR~~YD~~ 67 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKE--INEAYQVLS---DPEKRKLYDQF 67 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHH--HHHHHHHhc---CHHHHHHHhhh
Confidence 57888776 66778889999999999999974 35566655 777777776 77775555543
No 428
>PRK14287 chaperone protein DnaJ; Provisional
Probab=56.04 E-value=24 Score=35.51 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=43.5
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.||.|
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~--i~~Ay~~L~---d~~kR~~YD~~ 68 (371)
T PRK14287 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKE--VKEAYDTLS---DPQKKAHYDQF 68 (371)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHH--HHHHHHHhC---cHhHHHHHHhh
Confidence 57888877 66778889999999999999974 35555555 777777776 77775555543
No 429
>KOG1497|consensus
Probab=55.83 E-value=2.2e+02 Score=28.31 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCC
Q psy4703 45 ERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPD------D--PKALFRRCQAYEAIGKFEEAYTDAKHIH--RVEPTN 114 (401)
Q Consensus 45 ~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~------~--~kA~~~~a~a~~~lg~~eeA~~~~~kal--~l~P~~ 114 (401)
........+|..|-+.++|..|.+... ++.++.. . ...+.++|++|++.++-.+|..+..++- ..+..|
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 355678889999999999999887653 3344331 1 2347889999999999999999888764 345577
Q ss_pred ccHHHHHHHHHHHHHHHH
Q psy4703 115 KAIQPVLSRLFAIVTKRM 132 (401)
Q Consensus 115 ~~~~~~L~~l~~~~~~~~ 132 (401)
++.+-.+..++...-+..
T Consensus 180 e~Lqie~kvc~ARvlD~k 197 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYK 197 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766666554443
No 430
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=55.81 E-value=25 Score=26.66 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHHHH
Q psy4703 59 KQNQNDKVIEDCSKSL 74 (401)
Q Consensus 59 klg~y~~Ai~~~~kAL 74 (401)
..|+|++|+..|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 18 NAGNYEEALRLYQHAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444555554444433
No 431
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.75 E-value=2.5e+02 Score=28.82 Aligned_cols=58 Identities=21% Similarity=0.102 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc
Q psy4703 216 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 291 (401)
Q Consensus 216 v~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~ 291 (401)
...|..+++..+..++..|+..|++++.... .-.|... -...+++.|++|++||+-+-
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a------------~~~L~~a------l~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRRLS------------ESTLRLY------LRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccccc------------hHHHHHH------HcCCCHHHHHHHHHHHHHcC
Confidence 4566667777777788888888887775311 1122221 24457778888888886663
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.98 E-value=33 Score=32.25 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q psy4703 26 ETALDFYTKALKVTA----EESHERATCLKNRAAVYLK-QNQNDKVIEDCSKSL 74 (401)
Q Consensus 26 ~eAi~~y~~Al~l~~----p~~~~~~~~~~n~a~~y~k-lg~y~~Ai~~~~kAL 74 (401)
+.|...|++|+++.. |.+|..-.+..|.+..|+. +|+.++|+....+|+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 446666666655321 5556666666666655543 566666666665553
No 433
>PRK14283 chaperone protein DnaJ; Provisional
Probab=54.81 E-value=24 Score=35.59 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=43.3
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+.+.. ...+.+++.++++.|+..+|+|. +++..|++ +...+++|. |++....||.
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~--i~~Ay~~Ls---d~~kR~~YD~ 68 (378)
T PRK14283 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKE--ISEAYAVLS---DDEKRQRYDQ 68 (378)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH--HHHHHHHhc---hhHHHHHHhh
Confidence 57888877 66778889999999999999974 35666655 777777776 7777455543
No 434
>KOG4014|consensus
Probab=54.60 E-value=90 Score=28.58 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703 25 YETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDA 104 (401)
Q Consensus 25 y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~ 104 (401)
...|.++|+++.++. +..+.+++...|+.-.+ ++ ....|.-.+- ..++..+.-+.+.+.|.+..
T Consensus 128 ~~Ka~~y~traCdl~------~~~aCf~LS~m~~~g~~--k~-------~t~ap~~g~p-~~~~~~~~~~kDMdka~qfa 191 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE------DGEACFLLSTMYMGGKE--KF-------KTNAPGEGKP-LDRAELGSLSKDMDKALQFA 191 (248)
T ss_pred cHHHHHHHHHhccCC------CchHHHHHHHHHhccch--hh-------cccCCCCCCC-cchhhhhhhhHhHHHHHHHH
Confidence 456677777776666 55666666666654321 11 1112211000 12344455556778888888
Q ss_pred HHHHhhCCCCccHHHHHHHHHH
Q psy4703 105 KHIHRVEPTNKAIQPVLSRLFA 126 (401)
Q Consensus 105 ~kal~l~P~~~~~~~~L~~l~~ 126 (401)
-+|.+++ ++.+-.++.+.+.
T Consensus 192 ~kACel~--~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 192 IKACELD--IPQACANVSRMYK 211 (248)
T ss_pred HHHHhcC--ChHHHhhHHHHHH
Confidence 8877774 3444455555544
No 435
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.56 E-value=65 Score=27.40 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----C-------cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703 10 NKLKESGNSAFKQGDYETALDFYTKALKVTAEE-----S-------HERATCLKNRAAVYLKQNQNDKVIEDCS 71 (401)
Q Consensus 10 ~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-----~-------~~~~~~~~n~a~~y~klg~y~~Ai~~~~ 71 (401)
+.+-..|+.+++.+++-.++-+|++|+.+. .+ . -.......|+|.-+..+|+.+=.+.+..
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~s-e~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq 74 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLS-EEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ 74 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHH-HHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence 355678999999999999999999999876 21 0 0012223455555666666555555544
No 436
>KOG1258|consensus
Probab=54.08 E-value=3e+02 Score=29.40 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Q psy4703 6 MNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIV-PDDPKAL 84 (401)
Q Consensus 6 p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ld-P~~~kA~ 84 (401)
+.+...|......-...|+++.....|.+++--+ . ....+|.+.+.-.-..|+..-|-....++.++. |..+..+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A---~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-A---LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-h---hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 3445556666666778899999999999998877 3 377889888888888898888888888887764 5666777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQ 118 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~ 118 (401)
..-+..-...|++..|...++++.+--|+..++-
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhH
Confidence 7778888888899999999999987778765443
No 437
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.97 E-value=86 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=13.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 87 RCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 87 ~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
.|.-.-..|+|++|+..|.++++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344456777777777766654
No 438
>PRK14282 chaperone protein DnaJ; Provisional
Probab=53.85 E-value=24 Score=35.46 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch------hhHHHhhhhHHHHHHHHhhccCchhHHhhH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS------GAEMLLKSGVAKQINTLLKCETNEEIYLGE 204 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~------gae~~~~e~~v~~L~~ll~~~~~~e~~lA~ 204 (401)
++|+++.. ...+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.|
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~--i~~Ay~vL~---d~~kR~~Y 67 (369)
T PRK14282 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKE--IQEAYEVLS---DPQKRAMY 67 (369)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHH--HHHHHHHhc---ChhhHHHH
Confidence 57887776 66778889999999999999864 24555555 667777776 77773333
No 439
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=53.84 E-value=85 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=7.0
Q ss_pred HcCCHHHHHHHHHHHH
Q psy4703 93 AIGKFEEAYTDAKHIH 108 (401)
Q Consensus 93 ~lg~~eeA~~~~~kal 108 (401)
..|+|++|+.+|..++
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4444444444444433
No 440
>KOG3783|consensus
Probab=52.15 E-value=1.5e+02 Score=31.25 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSKSLEI---VP----DDPKALFRRCQAYEAIGK-FEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l---dP----~~~kA~~~~a~a~~~lg~-~eeA~~~~~kal~l~P~~ 114 (401)
..--++.+|.++..+|+...|..+|..+++- .. -.|-|+|-+|..|..+|. +.+|...+.+|-+...++
T Consensus 448 ~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 448 EGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 3445667899999999999999999988732 21 237799999999999999 999999999998766443
No 441
>PRK14285 chaperone protein DnaJ; Provisional
Probab=52.13 E-value=26 Score=35.20 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh-----hHHHhhhhHHHHHHHHhhccCchhHHhhHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG-----AEMLLKSGVAKQINTLLKCETNEEIYLGEE 205 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g-----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e 205 (401)
++|+.+.. ...+.+.+.++++.|+.++|+|.. ++..|++ +...+++|. |++....|+
T Consensus 4 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~kr~~yd 66 (365)
T PRK14285 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKE--ATEAYEVLI---DDNKRAQYD 66 (365)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHHHHHHHc---CcchhHHHH
Confidence 57887776 667788899999999999999753 4455555 667777776 666633343
No 442
>PF12854 PPR_1: PPR repeat
Probab=52.00 E-value=38 Score=21.32 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703 82 KALFRRCQAYEAIGKFEEAYTDAK 105 (401)
Q Consensus 82 kA~~~~a~a~~~lg~~eeA~~~~~ 105 (401)
..|..+-..|.+.|+.++|++.|+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555555555555443
No 443
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=51.93 E-value=3e+02 Score=28.75 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=98.4
Q ss_pred ccCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy4703 2 IDNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDP 81 (401)
Q Consensus 2 i~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~ 81 (401)
|+.||.+...|+..-..+-.+|.+++-.+.|.+...-. | ....+|...-..-+..++|......+.++|.-.=+ .
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p---~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-l 109 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-P---IMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-L 109 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-c---cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-H
Confidence 67899999999999999999999999999999987766 4 24444443333333456777777777776653321 2
Q ss_pred HHHHH-HHHHHHH----cC----CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q psy4703 82 KALFR-RCQAYEA----IG----KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTKRMQENE-QLQNKVHNMFKYVFD 151 (401)
Q Consensus 82 kA~~~-~a~a~~~----lg----~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~~~~a~~-~~~~~~~~~~~~~~~ 151 (401)
..|.. +.-+... .| ..-+|.+.--.+.-.+|.....+.......+......+-+. +.-..+.+.|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 22111 1111111 11 13345554444556789988899888877776554443222 222567888999988
Q ss_pred CC-CChhHHHHHHHHH
Q psy4703 152 TS-APMDKRVTAVNNL 166 (401)
Q Consensus 152 ~~-~~~~~~~~a~~~L 166 (401)
.| .+.++..+.+.++
T Consensus 190 tP~~nleklW~dy~~f 205 (660)
T COG5107 190 TPMGNLEKLWKDYENF 205 (660)
T ss_pred CccccHHHHHHHHHHH
Confidence 55 4445555555544
No 444
>PF15469 Sec5: Exocyst complex component Sec5
Probab=51.30 E-value=1.1e+02 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 96 KFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 96 ~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
..++........++++|....++..+
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 45556666666667777555555443
No 445
>KOG2041|consensus
Probab=51.24 E-value=97 Score=33.92 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Q psy4703 44 HERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSR 123 (401)
Q Consensus 44 ~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~ 123 (401)
.....++.++|..+..+..|++|.++|...-.. -+...+|+.++.|++= +.....-|.+......++.
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~ 860 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHH
Confidence 345677888888888888888888888764222 1344555555555542 3333334666666666666
Q ss_pred HHHHHHHHHH
Q psy4703 124 LFAIVTKRMQ 133 (401)
Q Consensus 124 l~~~~~~~~~ 133 (401)
.....+--.+
T Consensus 861 mf~svGMC~q 870 (1189)
T KOG2041|consen 861 MFTSVGMCDQ 870 (1189)
T ss_pred HHHhhchHHH
Confidence 6555554433
No 446
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.13 E-value=60 Score=30.50 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPK 82 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~k 82 (401)
-...+.+.+...+||.....-++.. |. +......+-..|.-.|+|++|...++-+-++.|++.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Pt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-Cc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3456788899999999999999999 76 5555555666777899999999999999999998754
No 447
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=50.72 E-value=1.3e+02 Score=26.02 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 50 LKNRAAVYL-KQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 50 ~~n~a~~y~-klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
|..+|.-++ +.|+-++--..+.....-+..++..++.+|.+|.++|+-.+|-..+++|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344444433 3333333333333444445567899999999999999999999988888753
No 448
>PRK14280 chaperone protein DnaJ; Provisional
Probab=50.41 E-value=32 Score=34.75 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+++.. ...+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. +++..-.|+.|
T Consensus 5 ~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~--i~~Ay~vL~---d~~kr~~yD~~ 68 (376)
T PRK14280 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKE--ISEAYEVLS---DDQKRAQYDQF 68 (376)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH--HHHHHHHhc---cHhHHHHHHhc
Confidence 57888877 56777889999999999999873 35666655 777777776 67665555543
No 449
>PRK14277 chaperone protein DnaJ; Provisional
Probab=50.37 E-value=35 Score=34.55 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=42.4
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+++.. ...+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.|+.
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~kr~~yD~ 69 (386)
T PRK14277 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKE--INEAYEILS---DPQKRAQYDQ 69 (386)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHH--HHHHHHHhC---CHHHHHHHHh
Confidence 57888776 66778889999999999999874 34555555 777777776 6776445543
No 450
>PRK14284 chaperone protein DnaJ; Provisional
Probab=49.90 E-value=34 Score=34.72 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=42.8
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+++.. .+.+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.||.|
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~kR~~YD~~ 66 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKE--VSEAYEVLS---DAQKRESYDRY 66 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHH--HHHHHHHhc---CHHHHHHHHhc
Confidence 46888877 66778889999999999999864 34555554 777777776 77775555543
No 451
>KOG0292|consensus
Probab=49.90 E-value=3.3e+02 Score=30.84 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----C--cchHHHHHHHHHHHHH------------cCCHHHH--
Q psy4703 8 DYNKLKESGNSAFKQGDYETALDFYTKALKVTAEE-----S--HERATCLKNRAAVYLK------------QNQNDKV-- 66 (401)
Q Consensus 8 ~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~-----~--~~~~~~~~n~a~~y~k------------lg~y~~A-- 66 (401)
....-.+.|..+...|++.+|+++|..+|-.. |- . ...+.-+..++.-|.- .+..+++
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i-~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSI-PLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhhe-eEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 34555678999999999999999999998776 31 1 1122333334433431 2234444
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Q psy4703 67 IEDCSKSLEIVPDDPK-ALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQP 119 (401)
Q Consensus 67 i~~~~kAL~ldP~~~k-A~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~ 119 (401)
+..|-.-..+.|-+.- ++..--.+++++++|..|-....+.+++.|..+.+..
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3444444566665543 4444446789999999999999999999998766543
No 452
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=49.18 E-value=1.9e+02 Score=29.91 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=65.1
Q ss_pred cHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhhcc-CC
Q psy4703 215 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT-LD 293 (401)
Q Consensus 215 gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay~~-~~ 293 (401)
.+.-|.+=+.+.|+.++..||-.||.++.. .-.-.+...+.+.+..+ ++..|+.|+-++.-+. .+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------------~~~~~l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP------------EMAEPLIPDVIKLLSDP--SPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------------HHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc------------chhhHHHHHHHHHhcCC--chHHHHHHHHHHHHHhccC
Confidence 344555556678888888888888887732 11234566666666533 4578888988888774 44
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhc
Q psy4703 294 AEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDV 334 (401)
Q Consensus 294 ~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~ 334 (401)
|+. +.+. ++..|.+++.+. +.+|...++ +.+..+
T Consensus 146 p~~----~~~~-~~~~l~~lL~d~-~~~V~~~a~-~~l~~i 179 (526)
T PF01602_consen 146 PDL----VEDE-LIPKLKQLLSDK-DPSVVSAAL-SLLSEI 179 (526)
T ss_dssp HCC----HHGG-HHHHHHHHTTHS-SHHHHHHHH-HHHHHH
T ss_pred HHH----HHHH-HHHHHhhhccCC-cchhHHHHH-HHHHHH
Confidence 443 2233 677777777666 777888877 777777
No 453
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.18 E-value=1.2e+02 Score=23.13 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=10.1
Q ss_pred HcCCHHHHHHHHHHHHh
Q psy4703 93 AIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 93 ~lg~~eeA~~~~~kal~ 109 (401)
..|+|++|+..|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55666666666655554
No 454
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.03 E-value=1e+02 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
.....|...+..|||..|.+...++-+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344455555555555555555555433
No 455
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=49.02 E-value=1.2e+02 Score=34.52 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHH
Q psy4703 24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIG-----KFE 98 (401)
Q Consensus 24 ~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg-----~~e 98 (401)
.+++|+..|++.-. . |. .+--|...|.+|.++|+|++-+.++.-|++.-|.+|..-.-+-.+-..+- .-.
T Consensus 534 ~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (932)
T PRK13184 534 DFTQALSEFSYLHG-G-VG---APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRR 608 (932)
T ss_pred HHHHHHHHHHHhcC-C-CC---CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766322 2 33 56678899999999999999999999999999998764333322222221 123
Q ss_pred HHHHHHHHHHhhCCCCccH
Q psy4703 99 EAYTDAKHIHRVEPTNKAI 117 (401)
Q Consensus 99 eA~~~~~kal~l~P~~~~~ 117 (401)
.|+...--++.+-|.....
T Consensus 609 ~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 609 EALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHHHHhCcccccc
Confidence 4555666677778866443
No 456
>PRK14294 chaperone protein DnaJ; Provisional
Probab=48.88 E-value=41 Score=33.80 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh-----hHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG-----AEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g-----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|.. ++..|++ +...+++|. |++..-.||.
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~--~~~Ay~vL~---d~~~r~~yD~ 68 (366)
T PRK14294 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKE--AAEAYEVLS---DPKKRGIYDQ 68 (366)
T ss_pred ChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHH--HHHHHHHhc---cHHHHHHHHh
Confidence 57888877 567788899999999999998642 4555554 666677766 7777444443
No 457
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=48.83 E-value=2e+02 Score=33.82 Aligned_cols=123 Identities=19% Similarity=0.130 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHHHH----------------------------
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTAE--ESHERATCLKNRAAVYL---------------------------- 58 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p--~~~~~~~~~~n~a~~y~---------------------------- 58 (401)
....+..|+.++..|.|.+|+..|.+|+...+. |.-=.+.++-.++.|.+
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 456678899999999999999999999987531 10001222222222211
Q ss_pred -----------------------------------HcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcC--
Q psy4703 59 -----------------------------------KQNQNDKVIEDCSKSLEI----VPD--DPKALFRRCQAYEAIG-- 95 (401)
Q Consensus 59 -----------------------------------klg~y~~Ai~~~~kAL~l----dP~--~~kA~~~~a~a~~~lg-- 95 (401)
-...+++|+.+|+++... .|. +.++..+.+..+....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 122478889999988632 232 3578888998888888
Q ss_pred ------------------CHHHHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHHHH
Q psy4703 96 ------------------KFEEAYTDAKHIHRVEPTNK------AIQPVLSRLFAIVTKR 131 (401)
Q Consensus 96 ------------------~~eeA~~~~~kal~l~P~~~------~~~~~L~~l~~~~~~~ 131 (401)
.-.++.....+++.+...+- .+...++.++..++-.
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~ 461 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFH 461 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchh
Confidence 78888888888887765432 3444556666666544
No 458
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.41 E-value=54 Score=33.06 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCCchhHHhHHhhhh---hcc---CCHHHHHhhc---C-C---HHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCcH
Q psy4703 274 ARDPDIRRWAAEGLA---YLT---LDAEVKEALI---E-D---KPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDE 340 (401)
Q Consensus 274 ~~~~~~~~~~~egla---y~~---~~~~vke~~~---~-d---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 340 (401)
+..+..++++-+||- .+| ++++...+|. . + .+.++++-+.++.. +..+++=.+ ++-.++ --+.
T Consensus 219 Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~-g~~V~ieyv--LI~GvN-Ds~e 294 (368)
T PRK14456 219 GITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKT-GEPVTLVYM--LLEGIN-DSPE 294 (368)
T ss_pred CChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhc-CCeEEEEEE--EEcCCC-CCHH
Confidence 456778888888984 233 5678888885 2 3 44455555555544 444443222 122222 3347
Q ss_pred HHHHHHhhHhhh---hhhhhccCCCc-------cchHHHHHH-HHHHHhccccceehhccCC
Q psy4703 341 FMEEVAKLEKEE---AEMLETLYQDE-------KELADFYSL-LSTLVNGSSSVGMRKKRGL 391 (401)
Q Consensus 341 ~~~~l~~~~~~~---~~~~~~~~~~~-------~~~~~~v~~-~~~~~~~~~~~~~~~~~~~ 391 (401)
.+.+|++|.+.. +.+- +-|| --+++++.. .+.|.+.||.|.+|+.||.
T Consensus 295 da~~L~~~l~~~~~~VnlI---pyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 295 DARKLIRFASRFFCKINLI---DYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHHHHHHHhcCCCeeEEe---eeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 888889888873 1100 1122 234678999 9999999999999999995
No 459
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=48.34 E-value=28 Score=31.16 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=60.2
Q ss_pred hcCC-HHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc---HHHHHHHhhHhhhhhhhhccCCCccchHHHHHHHHH
Q psy4703 300 LIED-KPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD---EFMEEVAKLEKEEAEMLETLYQDEKELADFYSLLST 375 (401)
Q Consensus 300 ~~~d-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 375 (401)
|..| .+..+.+++-+++.|-++.+|+.+-..+.=+..--| ..+.+|...++.-+-+| +..+--.+++||..+..
T Consensus 24 L~~DY~ev~~d~~~~~k~rP~ka~~~~~~lg~~~~~~~~nPde~~f~~~L~e~sn~l~lv~--~~~rNp~S~~hvq~l~~ 101 (173)
T PF10171_consen 24 LLRDYKEVARDVVKDAKERPVKAALYLTLLGGAYYCYRTNPDEQSFEDALLEASNDLLLVS--PAIRNPTSDKHVQRLMR 101 (173)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCceeccC--hhhcCchHHHHHHHHHH
Confidence 4445 667788888888888888888766455555555566 77888888888865322 24466678999999999
Q ss_pred HHhccccc
Q psy4703 376 LVNGSSSV 383 (401)
Q Consensus 376 ~~~~~~~~ 383 (401)
+++.|.+-
T Consensus 102 l~nqg~Lr 109 (173)
T PF10171_consen 102 LRNQGRLR 109 (173)
T ss_pred HhcCCceE
Confidence 99998753
No 460
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=48.32 E-value=24 Score=23.01 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHhcHHHHHHHHcCCChhHHHHHHHhhhhc
Q psy4703 212 IKQGVDILKRLYMSKNENIRVRALVGLCKL 241 (401)
Q Consensus 212 ~~~gv~~Lk~l~~s~~d~i~~ralvgLckl 241 (401)
-.+|++.|-+++++.+++++..|+..|+-+
T Consensus 10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 446699999999999999988777777654
No 461
>PRK14298 chaperone protein DnaJ; Provisional
Probab=48.10 E-value=33 Score=34.62 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+++.. ...+.+++.++++.|+..+|+|. +++..|++ ++..+++|. |++..-.||.|
T Consensus 6 d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~--i~~Ay~vL~---d~~kR~~YD~~ 69 (377)
T PRK14298 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKE--ISEAYAVLS---DAEKRAQYDRF 69 (377)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHH--HHHHHHHhc---chHhhhhhhhc
Confidence 57888877 56777889999999999999864 34555555 777777776 77775556543
No 462
>KOG0985|consensus
Probab=47.83 E-value=5e+02 Score=30.11 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=70.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH------HHhh--------cC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 15 SGNSAFKQGDYETALDFYTK------ALKV--------TA----EESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~------Al~l--------~~----p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
.|+.....+-|++|...|.+ |++. ++ .++-..+.+|..+|.+.++.+.-.+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 46777778888888887643 2221 10 001236789999999999999999999999655
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 77 VPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHRV 110 (401)
Q Consensus 77 dP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l 110 (401)
+++..|...-++-...|.|++=+.++..|-+-
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 67888888889999999999999999887654
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=47.65 E-value=32 Score=29.00 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q psy4703 13 KESGNSAFKQGDYETALDFYTKALKVTAEE 42 (401)
Q Consensus 13 ~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~ 42 (401)
...|..+...|++++|+.+|-+||..+ |.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~-~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVC-PQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CC
Confidence 467999999999999999999999999 75
No 464
>KOG0985|consensus
Probab=47.61 E-value=1.3e+02 Score=34.61 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVP------------ 78 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP------------ 78 (401)
....-|..+|..|.|+.|--+|.. ..-|..+|..+..+|+|..|+....+|-...-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 346689999999999999888873 44566788899999999999998887633210
Q ss_pred -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q psy4703 79 -------------DDPKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIV 128 (401)
Q Consensus 79 -------------~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~ 128 (401)
-++.-+-.+-.-|...|-|++-+..++.++-+.-.+-.+...|+.++...
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 01222233444567778888888888888877766655666666665543
No 465
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.41 E-value=27 Score=26.68 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHHHHHh
Q psy4703 93 AIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 93 ~lg~~eeA~~~~~kal~ 109 (401)
..|+|++|+..|..+++
T Consensus 18 ~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 18 EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 33666666666666654
No 466
>KOG4014|consensus
Probab=47.24 E-value=1.6e+02 Score=27.00 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=46.2
Q ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCC
Q psy4703 12 LKESGNSAFK-----QGDYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQ-----N--QNDKVIEDCSKSLEIVPD 79 (401)
Q Consensus 12 l~~~Gn~~~~-----~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~kl-----g--~y~~Ai~~~~kAL~ldP~ 79 (401)
-+..|+-++. .++...|++.|..+...+ .+.+..++|..+..- + +..+|..+++++.+++
T Consensus 71 CyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n------~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~-- 142 (248)
T KOG4014|consen 71 CYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN------IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE-- 142 (248)
T ss_pred HHHhhhhhhcccCCCccCHHHHHHHHHHHhccC------CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--
Confidence 3444554442 456777888888777776 566666677666532 2 2677888888877764
Q ss_pred CHHHHHHHHHHHH
Q psy4703 80 DPKALFRRCQAYE 92 (401)
Q Consensus 80 ~~kA~~~~a~a~~ 92 (401)
+..+-|.+...|+
T Consensus 143 ~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 143 DGEACFLLSTMYM 155 (248)
T ss_pred CchHHHHHHHHHh
Confidence 5566666665554
No 467
>KOG4563|consensus
Probab=45.55 E-value=36 Score=34.06 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4703 49 CLKNRAAVYLKQNQNDKVIEDCSKSLEIVP--------DDPKALFRRCQAYEAIGKFEEAYTDA 104 (401)
Q Consensus 49 ~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP--------~~~kA~~~~a~a~~~lg~~eeA~~~~ 104 (401)
-+...|.-++.+++|++|...|..|..+.. ++..++|.+|.+++.+++++..+-..
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345578888999999999999999988743 45789999999999999999887554
No 468
>PRK14300 chaperone protein DnaJ; Provisional
Probab=44.62 E-value=42 Score=33.85 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=41.5
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS----GAEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+++.. ...+.+++.++++.++..+|+|. .++..|.+ ++..+++|. ++...-.||.
T Consensus 4 ~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~--i~~Ay~~L~---d~~~r~~yD~ 66 (372)
T PRK14300 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKE--INAAYDVLK---DEQKRAAYDR 66 (372)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHH--HHHHHHHhh---hHhHhhHHHh
Confidence 57888877 55777889999999999999873 35555555 666777766 5666444544
No 469
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.11 E-value=89 Score=23.41 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=7.7
Q ss_pred HcCCHHHHHHHHHHHH
Q psy4703 93 AIGKFEEAYTDAKHIH 108 (401)
Q Consensus 93 ~lg~~eeA~~~~~kal 108 (401)
..|++++|+..|..++
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555555544444
No 470
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=43.29 E-value=42 Score=33.44 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHhhc-CCCChhHHHHHHHHHHHhhhcchh----hHHHhhhhHHHHHHHHhhccCchhHHhhHH
Q psy4703 145 MFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG----AEMLLKSGVAKQINTLLKCETNEEIYLGEE 205 (401)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e 205 (401)
+|+.+.. ...+.+.+.++++.|+..+|+|.. ++..|.+ +...+++|. ++...-.|+
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~--i~~Ay~vL~---d~~~R~~yd 62 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKE--INEAYEVLS---DPEKRAQYD 62 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHH--HHHHHHHhh---ChHHHHhhh
Confidence 5776666 556778899999999999999764 4445444 666666665 666633343
No 471
>PRK10767 chaperone protein DnaJ; Provisional
Probab=43.13 E-value=42 Score=33.74 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh-----hHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG-----AEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g-----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+++.. ...+.+.+.++++.|+..+|+|.. ++..|++ +...+++|. +++..-.|+.|
T Consensus 5 d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~~L~---d~~~r~~yd~~ 69 (371)
T PRK10767 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKE--IKEAYEVLS---DPQKRAAYDQY 69 (371)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHH--HHHHHHHhc---chhhhhHhhhc
Confidence 57888877 567778899999999999999752 4445544 666666665 66665555543
No 472
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.88 E-value=46 Score=25.80 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHhhc
Q psy4703 23 GDYETALDFYTKALKVT 39 (401)
Q Consensus 23 g~y~eAi~~y~~Al~l~ 39 (401)
+-|+.|..+.++||..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34566666666666666
No 473
>PF13041 PPR_2: PPR repeat family
Probab=42.66 E-value=1e+02 Score=20.69 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4703 11 KLKESGNSAFKQGDYETALDFYTKALKV 38 (401)
Q Consensus 11 ~l~~~Gn~~~~~g~y~eAi~~y~~Al~l 38 (401)
.|...-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444444555566666666666655544
No 474
>PRK14281 chaperone protein DnaJ; Provisional
Probab=42.65 E-value=46 Score=33.89 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh-----hHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG-----AEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g-----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+++.. ...+.+.+.++++.|+..+|+|.. ++..|++ ++..+++|. ++...-.||.|
T Consensus 4 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~~r~~yD~~ 68 (397)
T PRK14281 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKE--VNEAYEVLS---NDDKRRRYDQF 68 (397)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHH--HHHHHHHhh---hhhhhhhhhhc
Confidence 57888876 567778899999999999999742 4455554 777777776 66665555543
No 475
>PRK14278 chaperone protein DnaJ; Provisional
Probab=42.37 E-value=28 Score=35.18 Aligned_cols=58 Identities=12% Similarity=-0.043 Sum_probs=41.5
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh----hHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG----AEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+++.. .+.+.+.+.++++.|+..+|+|.. ++..|++ ++..+++|. +++....||.
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~--i~~Ay~vL~---d~~~r~~YD~ 66 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKE--ISVAYEVLS---DPEKRRIVDL 66 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH--HHHHHHHhc---hhhhhhhhhc
Confidence 46777766 567778899999999999998642 4555555 777777776 6666555543
No 476
>KOG0276|consensus
Probab=41.71 E-value=4.1e+02 Score=28.79 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy4703 24 DYETALDFYTKALKVTAEESHERATCLKNRAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTD 103 (401)
Q Consensus 24 ~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~ 103 (401)
.|-+-..+.++|+++. ++ ++. +=.+.+++|+++.|.+ |....++..-|..+|.+.+..+++..|.++
T Consensus 622 ~Fle~~g~~e~AL~~s-~D-~d~------rFelal~lgrl~iA~~-----la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC 688 (794)
T KOG0276|consen 622 HFLESQGMKEQALELS-TD-PDQ------RFELALKLGRLDIAFD-----LAVEANSEVKWRQLGDAALSAGELPLASEC 688 (794)
T ss_pred hHhhhccchHhhhhcC-CC-hhh------hhhhhhhcCcHHHHHH-----HHHhhcchHHHHHHHHHHhhcccchhHHHH
Q ss_pred HHHHHhh--------CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhcchh
Q psy4703 104 AKHIHRV--------EPTNKAIQPVLSRLFAIVTKRMQENEQLQNKVHNMFKYVFDTSAPMDKRVTAVNNLVVLAREMSG 175 (401)
Q Consensus 104 ~~kal~l--------~P~~~~~~~~L~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~g 175 (401)
+.++..+ ..++.+....++...+..+...-+-- .|-...+ .....+.|..-+|..++
T Consensus 689 ~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~--------~~~l~g~-------~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 689 FLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFL--------AYFLSGD-------YEECLELLISTQRLPEA 753 (794)
T ss_pred HHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHH--------HHHHcCC-------HHHHHHHHHhcCcCcHH
Q ss_pred h--HHHhhhhHHHHHHHH
Q psy4703 176 A--EMLLKSGVAKQINTL 191 (401)
Q Consensus 176 a--e~~~~e~~v~~L~~l 191 (401)
+ .+-+-...+..+..+
T Consensus 754 al~ArtYlps~vs~iv~~ 771 (794)
T KOG0276|consen 754 ALFARTYLPSQVSRIVEL 771 (794)
T ss_pred HHHHhhhChHHHHHHHHH
No 477
>PF12854 PPR_1: PPR repeat
Probab=41.56 E-value=57 Score=20.45 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4703 46 RATCLKNRAAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 46 ~~~~~~n~a~~y~klg~y~~Ai~~~~k 72 (401)
+...|..+-.+|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 466777788888888888888887764
No 478
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.51 E-value=44 Score=33.79 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCchhHHhHHhhhhhc------cCCHHHHHhhcC------CHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCcHHH
Q psy4703 275 RDPDIRRWAAEGLAYL------TLDAEVKEALIE------DKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFDEFM 342 (401)
Q Consensus 275 ~~~~~~~~~~eglay~------~~~~~vke~~~~------d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 342 (401)
..+..++.+-|||-+. +.|++...+|.- -.+.|.++.+.++.. +..+++-.+ .+-.++ --+...
T Consensus 224 l~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~-grrv~ieyv--Li~GvN-Ds~e~a 299 (373)
T PRK14459 224 LVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADAT-GRRVSIEYA--LIRDIN-DQPWRA 299 (373)
T ss_pred chhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHh-CCEEEEEEE--EeCCCC-CCHHHH
Confidence 4456667777776542 578899999876 255666666666443 444444333 122222 333555
Q ss_pred HHHHhhHhhh------hhhhhccCCCcc-------chHHHHHH-HHHHHhccccceehhccCC
Q psy4703 343 EEVAKLEKEE------AEMLETLYQDEK-------ELADFYSL-LSTLVNGSSSVGMRKKRGL 391 (401)
Q Consensus 343 ~~l~~~~~~~------~~~~~~~~~~~~-------~~~~~v~~-~~~~~~~~~~~~~~~~~~~ 391 (401)
.+|++|.+.. +.+- +=||. .+.+.+.. .+.|.++||.+.+|+.||-
T Consensus 300 ~~L~~llk~~~~~~~~VNLI---pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 300 DLLGKKLHGRGGGWVHVNLI---PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred HHHHHHHhhccCCCeEEEEE---ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 5566655543 2211 11332 34577888 9999999999999999995
No 479
>PRK14299 chaperone protein DnaJ; Provisional
Probab=41.43 E-value=57 Score=31.63 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=37.7
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh----hHHHhhhhHHHHHHHHhhccCchhH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG----AEMLLKSGVAKQINTLLKCETNEEI 200 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g----ae~~~~e~~v~~L~~ll~~~~~~e~ 200 (401)
++|+++.. ...+.+.+.++++.|+..+|++.. ++..|++ ++...+++. +++.
T Consensus 5 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~--i~~Ay~~L~---d~~k 61 (291)
T PRK14299 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKE--INEAYTVLS---DPEK 61 (291)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHH--HHHHHHHhc---CHHH
Confidence 57887776 567788899999999999998643 4444444 666666665 6666
No 480
>KOG2160|consensus
Probab=41.30 E-value=3.8e+02 Score=26.79 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=102.1
Q ss_pred CCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHhhHHHHH------------HHHHHhcHHHH
Q psy4703 152 TSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYLGEEDFI------------TSIIKQGVDIL 219 (401)
Q Consensus 152 ~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~fi------------~~i~~~gv~~L 219 (401)
...+.+.+..+..+|....+.-.-|..+...+|...+...+. .+++.++..-..-| ..+-.+|...|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456678888899998887776555555557778777777777 56666632211111 22334567777
Q ss_pred HHHHc-CCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHH----HHHHHhhhcCCCCCchhHHhHHhhhhhccCCH
Q psy4703 220 KRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKL----AEACRRFLVNPARDPDIRRWAAEGLAYLTLDA 294 (401)
Q Consensus 220 k~l~~-s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l----~~~~~~~l~~~~~~~~~~~~~~eglay~~~~~ 294 (401)
-.++. +++..++..||.++|-+= |-+..|.+.-+ ..-.++-|..++.+.-.++-|+.=++|++.--
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLI---------Rn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLI---------RNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHH---------hcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 67676 677788888888887443 33333433111 23345556566678888888999999998665
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcC
Q psy4703 295 EVKEALIEDKPALAALVDVASSV 317 (401)
Q Consensus 295 ~vke~~~~d~~~l~~l~~~~~~~ 317 (401)
.-.+.++.+-.|.+-+..+...-
T Consensus 243 ~s~~d~~~~~~f~~~~~~l~~~l 265 (342)
T KOG2160|consen 243 KSDEDIASSLGFQRVLENLISSL 265 (342)
T ss_pred hhhhhHHHHhhhhHHHHHHhhcc
Confidence 55556778888877777776665
No 481
>PRK14301 chaperone protein DnaJ; Provisional
Probab=41.16 E-value=50 Score=33.30 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=41.4
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh-----hHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG-----AEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g-----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|.. ++..|++ +...+++|. ++.....||.|
T Consensus 5 ~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~kr~~yD~~ 69 (373)
T PRK14301 5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKE--AAEAYEVLR---DAEKRARYDRF 69 (373)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHH--HHHHHHHhc---chhhhhhhhhc
Confidence 57888877 567778889999999999998642 4455554 666666666 66664445443
No 482
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.16 E-value=5.5e+02 Score=28.38 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=77.0
Q ss_pred HHHhcHHHHHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCC-CCCchHHHHHHHHhhhcCCCCCchhHHhHHhhhhh
Q psy4703 211 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY 289 (401)
Q Consensus 211 i~~~gv~~Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~-~~~s~~~l~~~~~~~l~~~~~~~~~~~~~~eglay 289 (401)
...+++..|-+++.+++.++-+-++.-|-||.-.+. +...+ ..|-..+|.+ ++ ++.+.+.++-++--|-=
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E---NK~~m~~~giV~kL~k----Ll--~s~~~~l~~~aLrlL~N 357 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE---NKDEMAESGIVEKLLK----LL--PSENEDLVNVALRLLFN 357 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHcCCHHHHHH----Hh--cCCCHHHHHHHHHHHHH
Confidence 356779999999998888887777777777765322 22222 2233334443 33 33456789999999999
Q ss_pred ccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhccc
Q psy4703 290 LTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDK 336 (401)
Q Consensus 290 ~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~ 336 (401)
+|+|+++++.+++ ...+..|+.++++. +...-++ .++-||+.
T Consensus 358 LSfd~~~R~~mV~-~GlIPkLv~LL~d~---~~~~val-~iLy~LS~ 399 (708)
T PF05804_consen 358 LSFDPELRSQMVS-LGLIPKLVELLKDP---NFREVAL-KILYNLSM 399 (708)
T ss_pred hCcCHHHHHHHHH-CCCcHHHHHHhCCC---chHHHHH-HHHHHhcc
Confidence 9999999998875 44666888888754 3323355 78888885
No 483
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=40.00 E-value=65 Score=31.48 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=41.7
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh----hHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG----AEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ...+.+...++++.|+...|+|.. ++..|.+ ++...+++. ++...-.|+.|
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~--i~~Ay~~L~---~~~kr~~yD~~ 68 (306)
T PRK10266 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKE--VAEAWEVLS---DEQRRAEYDQL 68 (306)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH--HHHHHHHhh---hHHHHHHHHHh
Confidence 57887766 556778899999999999999743 5555554 666666666 66664445543
No 484
>PRK14297 chaperone protein DnaJ; Provisional
Probab=39.78 E-value=52 Score=33.23 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=41.8
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEED 206 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~ 206 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.||.
T Consensus 5 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~~r~~yD~ 68 (380)
T PRK14297 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKE--INEAYQVLS---DPQKKAQYDQ 68 (380)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHH--HHHHHHHhc---CHhhhCchhh
Confidence 57888876 56777889999999999999864 34556555 777777776 6666444543
No 485
>KOG4459|consensus
Probab=39.63 E-value=1.4e+02 Score=30.92 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---------------CC-CcchHHHHHHHHHHHH-HcC---CHHHHHH
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA---------------EE-SHERATCLKNRAAVYL-KQN---QNDKVIE 68 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~---------------p~-~~~~~~~~~n~a~~y~-klg---~y~~Ai~ 68 (401)
....+..|...+..++|.+++.++.+||+... |. .+.-....-.-+.+|. .-| +....+.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLR 110 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999987531 00 0000000000111111 011 1223334
Q ss_pred HHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q psy4703 69 DCSKSLEIVPDD----------PKALFRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVLSRLF 125 (401)
Q Consensus 69 ~~~kAL~ldP~~----------~kA~~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L~~l~ 125 (401)
.|...+.-.|.. ...|.++=.+|.+.|++..|++.....+--+|++..+..++.--.
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 444433333322 256777888999999999999999999999999988877765433
No 486
>KOG2422|consensus
Probab=39.51 E-value=5.2e+02 Score=27.85 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=68.4
Q ss_pred cCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cC---CC---------CcchHHHHH---HHHHHHHHcCC
Q psy4703 3 DNNMNDYNKLKESGNSAFKQGDYETALDFYTKALKV-----TA---EE---------SHERATCLK---NRAAVYLKQNQ 62 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l-----~~---p~---------~~~~~~~~~---n~a~~y~klg~ 62 (401)
..+|=+...+...+...-.+|+.+-|.....++|=. .+ |. .+.+-.+|. ..-....+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 346778889999999999999999988887777621 10 11 233333333 23344557899
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHH
Q psy4703 63 NDKVIEDCSKSLEIVPD-DPKALFRRCQAY-EAIGKFEEAYTDAK 105 (401)
Q Consensus 63 y~~Ai~~~~kAL~ldP~-~~kA~~~~a~a~-~~lg~~eeA~~~~~ 105 (401)
+.-|.++|.-.+.++|. +|-+...+-..| +...+|.=-++.++
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999998 776655555554 34444444444433
No 487
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=39.48 E-value=2.5e+02 Score=27.16 Aligned_cols=113 Identities=8% Similarity=0.012 Sum_probs=72.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHH--HHHcCCH----HHHHHHHHHHHHhCCCCHHHHHH
Q psy4703 15 SGNSAFKQGDYETALDFYTKALKVTAEE--SHERATCLKNRAAV--YLKQNQN----DKVIEDCSKSLEIVPDDPKALFR 86 (401)
Q Consensus 15 ~Gn~~~~~g~y~eAi~~y~~Al~l~~p~--~~~~~~~~~n~a~~--y~klg~y----~~Ai~~~~kAL~ldP~~~kA~~~ 86 (401)
.-..++..|+|++--..|.+..+.. .+ ..... |+..... .+.+... ..-.+..+.=++..|++.-++..
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~-~~s~~~e~~--Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La 82 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAW-LQSRDGEQR--YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLA 82 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhh-hhccCccch--HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHH
Confidence 4567888999999888888877544 21 01122 2222111 2222211 12344445557789999999998
Q ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHH
Q psy4703 87 RCQAYEAIG----------------------KFEEAYTDAKHIHRVEPTNKAIQPVLSRLFAIVTK 130 (401)
Q Consensus 87 ~a~a~~~lg----------------------~~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~~~~ 130 (401)
+|..+.... ..+.|..++.+|++++|....+...+-++-...++
T Consensus 83 ~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 83 MGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 888876543 26789999999999999988777777655554443
No 488
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=39.34 E-value=3.4e+02 Score=25.76 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=94.9
Q ss_pred cCCCChhHHHHHHHHHHHhhhcchhhHHHhhhhHHHHHHHHhhccCchhHHh-hHH---H------HHHHHHHhcHHHHH
Q psy4703 151 DTSAPMDKRVTAVNNLVVLAREMSGAEMLLKSGVAKQINTLLKCETNEEIYL-GEE---D------FITSIIKQGVDILK 220 (401)
Q Consensus 151 ~~~~~~~~~~~a~~~L~~l~~~~~gae~~~~e~~v~~L~~ll~~~~~~e~~l-A~e---~------fi~~i~~~gv~~Lk 220 (401)
+...+...+..+...+....-+....+.+-..||+..+..++. ..++.+.. |.. + .-..|......+++
T Consensus 22 ~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~ 100 (254)
T PF04826_consen 22 ESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCE 100 (254)
T ss_pred hcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 3334444444444444444444444455545588888888888 66666643 211 0 00112222233333
Q ss_pred HHHcC-CChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcC-CCCCchhHHhHHhhhhhccCCHHHHH
Q psy4703 221 RLYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN-PARDPDIRRWAAEGLAYLTLDAEVKE 298 (401)
Q Consensus 221 ~l~~s-~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~-~~~~~~~~~~~~eglay~~~~~~vke 298 (401)
.+... -+..+...++=.|+.+.. ++..-. -++..+..|+-- ..-+..++-.+.--|..+|=+|+.-.
T Consensus 101 ~~~s~~lns~~Q~agLrlL~nLtv---~~~~~~--------~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~ 169 (254)
T PF04826_consen 101 ETVSSPLNSEVQLAGLRLLTNLTV---TNDYHH--------MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTR 169 (254)
T ss_pred HHhcCCCCCHHHHHHHHHHHccCC---Ccchhh--------hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHH
Confidence 33332 222333322223333321 221111 122222222211 12244678889999999999999755
Q ss_pred hhcCCHHHHHHHHHHHhcCCCCcchhhhhhhHHhhcccCCc
Q psy4703 299 ALIEDKPALAALVDVASSVKYKNVWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 299 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 339 (401)
+|..- ..+..++.+..+...+.++.-++ ++|.||++-+-
T Consensus 170 ~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l-~~~~ni~~~~~ 208 (254)
T PF04826_consen 170 ELLSA-QVLSSFLSLFNSSESKENLLRVL-TFFENINENIK 208 (254)
T ss_pred HHHhc-cchhHHHHHHccCCccHHHHHHH-HHHHHHHHhhC
Confidence 55554 47889999888875678999999 99999976554
No 489
>PRK11619 lytic murein transglycosylase; Provisional
Probab=38.88 E-value=2.5e+02 Score=30.57 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4703 53 RAAVYLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEAIGKFEEAYTDAKHIHR 109 (401)
Q Consensus 53 ~a~~y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~lg~~eeA~~~~~kal~ 109 (401)
+....+..++++.+...+...-.-........|.+|.++..+|+-++|...|+++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344455778887777666664333335677888899998889999999998888743
No 490
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.28 E-value=3.2e+02 Score=25.97 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh------CCC
Q psy4703 9 YNKLKESGNSAFKQGDYETALDFYTKALKVTA--EESHERATCLKNRAAVYLKQNQND-KVIEDCSKSLEI------VPD 79 (401)
Q Consensus 9 a~~l~~~Gn~~~~~g~y~eAi~~y~~Al~l~~--p~~~~~~~~~~n~a~~y~klg~y~-~Ai~~~~kAL~l------dP~ 79 (401)
.+.++.-+..+++.|++.-|.+.-.-.|+.-. .. +.+.....++..++.....-+ .-....+++++- .-.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~-~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSED-PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 44556666778888888888776544444320 11 223334456666666554322 223333333332 236
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4703 80 DPKALFRRCQAYEAIGKFEEAYTDAK 105 (401)
Q Consensus 80 ~~kA~~~~a~a~~~lg~~eeA~~~~~ 105 (401)
++..|...|..|.+.|+|.+|..+|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 78999999999999999999998874
No 491
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.26 E-value=69 Score=26.97 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Q psy4703 85 FRRCQAYEAIGKFEEAYTDAKHIHRVEPTNKAIQPVL 121 (401)
Q Consensus 85 ~~~a~a~~~lg~~eeA~~~~~kal~l~P~~~~~~~~L 121 (401)
..+|..+...|++++|..+|-+|+.+.|+-.+....+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4589999999999999999999999999855444433
No 492
>KOG4331|consensus
Probab=37.12 E-value=1e+02 Score=34.10 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=75.5
Q ss_pred CCCCCCCCCchHHHHHHHHhhhcC--CCCCchhHHhHHhhhhhccCCHHHHHhhcCCHHHHHHHHHHHhcCCCCcchhhh
Q psy4703 249 ASIRPFADGSTRKLAEACRRFLVN--PARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSVKYKNVWNGT 326 (401)
Q Consensus 249 ~~~~~~~~~s~~~l~~~~~~~l~~--~~~~~~~~~~~~eglay~~~~~~vke~~~~d~~~l~~l~~~~~~~~~~~~~~~~ 326 (401)
...+++.+-+.+.++...+..... |+.-.-..+|-.||+-=+- .--|+-.. .--+.|.+-+..+.+. -+++.-.+
T Consensus 635 ~i~~~~~~mnl~s~a~el~~~~dal~~s~~~~sv~~~~q~lr~l~-~q~v~pl~-s~l~~l~anlk~ld~~-l~~l~~~v 711 (865)
T KOG4331|consen 635 QILSWADDMNLLSLANELEELADALENSIGCCSVDWLAQGLRCLH-QQFVIPLL-SLLEKLNANLKVLDER-LSSLQSSV 711 (865)
T ss_pred HhccCCCccCHHHHHHHHHHHhcccCcCccchHhHHHHHHhHHHH-HHHHhhHH-HHHHHHHHHHHHHHHh-hhhhhHHH
Confidence 356778888888899998888865 6777778899999992221 11111000 0112233333333333 33455555
Q ss_pred hhhHHhhcccCCc---------------HHHHHHHhhHhhhhhh-hhccCCCccchHHHHHHHHHHHhccccceehhccC
Q psy4703 327 QSDALKDVDKAFD---------------EFMEEVAKLEKEEAEM-LETLYQDEKELADFYSLLSTLVNGSSSVGMRKKRG 390 (401)
Q Consensus 327 ~~~~~~n~~~~~~---------------~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 390 (401)
= .+++|++++.| ++..+.+.|-.+-+-. . .+|. +.-.+..-.......|++ .+ -.+-
T Consensus 712 s-~lla~~~~aq~~l~~~~~~~l~~~~~~~~~~~~~~~~~YI~wv~---~e~~-e~V~sCqPls~~l~~~~~-~l-C~~~ 784 (865)
T KOG4331|consen 712 S-RLLADLQGAQPFLRQNPPPPLAPKPKPRLRRIKGYISQYILWVQ---KEHL-ENVASCQPLSKILRENVV-VL-CGYI 784 (865)
T ss_pred H-HHHHhhhcchhhhhhccchhccccChHHHHHHHhhHHHHHHHHH---HHHH-hhccccccHHHHHHhhhH-hh-hhhc
Confidence 4 88999998887 5566666666552210 1 1121 111111112233344441 11 2345
Q ss_pred CCCCCCCCC
Q psy4703 391 LQPYNLPWS 399 (401)
Q Consensus 391 ~~~~~~~~~ 399 (401)
..|||+||-
T Consensus 785 iDPlN~fW~ 793 (865)
T KOG4331|consen 785 IDPLNLFWF 793 (865)
T ss_pred cCCccccch
Confidence 789999995
No 493
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.02 E-value=54 Score=19.11 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=8.0
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q psy4703 54 AAVYLKQNQNDKVIEDCSK 72 (401)
Q Consensus 54 a~~y~klg~y~~Ai~~~~k 72 (401)
-.+|.+.|++++|...+++
T Consensus 7 i~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3344444444444444433
No 494
>PRK14289 chaperone protein DnaJ; Provisional
Probab=36.61 E-value=79 Score=31.98 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=42.4
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHHHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEEDF 207 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e~f 207 (401)
++|+.+.. ...+.+++.++++.|+...|+|. .++..|.+ +...+++|. +++..-.||.|
T Consensus 6 ~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~--i~~Ay~~L~---d~~~R~~yD~~ 70 (386)
T PRK14289 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKE--AAEAYDVLS---DPDKRSRYDQF 70 (386)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHH--HHHHHHHhc---CHHHHHHHHHh
Confidence 57887776 56777889999999999999864 34555554 666677766 67665556554
No 495
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.51 E-value=1.2e+02 Score=29.44 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred cCChhHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH------HHcCCHHHHHHHHHHHH
Q psy4703 3 DNNMNDYNKLKESGNSA--FKQGDYETALDFYTKALKVTAEESHERATCLKNRAAVY------LKQNQNDKVIEDCSKSL 74 (401)
Q Consensus 3 ~~~p~~a~~l~~~Gn~~--~~~g~y~eAi~~y~~Al~l~~p~~~~~~~~~~n~a~~y------~klg~y~~Ai~~~~kAL 74 (401)
..+|+.-..+..+-..+ +...+|..-+..-.+.++.| |. +.-.|..|-.|. +.-.++.+..++-+.+|
T Consensus 102 k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~D-sr---NyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I 177 (328)
T COG5536 102 KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSD-SR---NYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLI 177 (328)
T ss_pred hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccc-cc---ccceeeeEeeeeecchhhccchhHHHHHHhHHHHH
Confidence 34566555555444433 33355666666677777777 54 555555555554 44455667788888888
Q ss_pred HhCCCCHHHHHHHHH---HHHHcCC------HHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q psy4703 75 EIVPDDPKALFRRCQ---AYEAIGK------FEEAYTDAKHIHRVEPTNKAIQPVLSRLFAI 127 (401)
Q Consensus 75 ~ldP~~~kA~~~~a~---a~~~lg~------~eeA~~~~~kal~l~P~~~~~~~~L~~l~~~ 127 (401)
..|+.|..||..|-. ..+..|+ +++-++..-.++-.+|+|..++..+.-+...
T Consensus 178 ~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 178 ETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred hhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 889988888877732 2233443 5556666666777788888887776555443
No 496
>PRK14295 chaperone protein DnaJ; Provisional
Probab=36.26 E-value=72 Score=32.37 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcch-----hhHHHhhhhHHHHHHHHhhccCchhHHhhHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMS-----GAEMLLKSGVAKQINTLLKCETNEEIYLGEE 205 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~-----gae~~~~e~~v~~L~~ll~~~~~~e~~lA~e 205 (401)
++|+.+.. .+.+.+.+.++++.|+..+|+|. .++..|++ ++..+++|. |++..-.||
T Consensus 10 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~--i~~Ay~vL~---d~~~r~~yD 72 (389)
T PRK14295 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKE--ISEAYDVLS---DEKKRKEYD 72 (389)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHH--HHHHHHHHC---chhhHHHHH
Confidence 57888877 66778889999999999999974 34566655 777777776 676633333
No 497
>PF13041 PPR_2: PPR repeat family
Probab=35.80 E-value=1.4e+02 Score=20.08 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy4703 47 ATCLKNRAAVYLKQNQNDKVIEDCSKSLEI 76 (401)
Q Consensus 47 ~~~~~n~a~~y~klg~y~~Ai~~~~kAL~l 76 (401)
...|.-+-.+|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345555666666666777777666666554
No 498
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.73 E-value=4.5e+02 Score=27.97 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCC
Q psy4703 57 YLKQNQNDKVIEDCSKSLEIVPDDPKALFRRCQAYEA--------------------IGKFEEAYTDAKHIHRVEPTN 114 (401)
Q Consensus 57 y~klg~y~~Ai~~~~kAL~ldP~~~kA~~~~a~a~~~--------------------lg~~eeA~~~~~kal~l~P~~ 114 (401)
|-...+|.+|+......|+.|..+.+|.-.+-.-+.. -.+|-+|+.+|++.+..+..|
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 3346789999999999999999999887776666655 557889999999999887766
No 499
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.44 E-value=86 Score=30.51 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=72.9
Q ss_pred HHHHHcCCChhHHHHHHHhhhhccccCCCCCCCCCCCCCchHHHHHHHHhhhcCCC--CCchhHHhHHhhhhhccCCHHH
Q psy4703 219 LKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPA--RDPDIRRWAAEGLAYLTLDAEV 296 (401)
Q Consensus 219 Lk~l~~s~~d~i~~ralvgLckl~~~gg~d~~~~~~~~~s~~~l~~~~~~~l~~~~--~~~~~~~~~~eglay~~~~~~v 296 (401)
+-+++++++.-|...++..|..+-..++.... +.+.+.....=.|+.+-. .+.+...-++..|+-+.-.++.
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 33366777888888777777777665433221 111244455556666422 2334458899999999999999
Q ss_pred HHhhcCCHHHHHHHHHHH------hcCCCCcchhhhhhhHHhhcccCCc
Q psy4703 297 KEALIEDKPALAALVDVA------SSVKYKNVWNGTQSDALKDVDKAFD 339 (401)
Q Consensus 297 ke~~~~d~~~l~~l~~~~------~~~~~~~~~~~~~~~~~~n~~~~~~ 339 (401)
+..+.+ ...++.|++++ ++..+--+.|-++ -++.-|| +-|
T Consensus 184 R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l-l~lWlLS-F~~ 229 (312)
T PF03224_consen 184 RQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQAL-LCLWLLS-FEP 229 (312)
T ss_dssp HHHHHT-HHHHHHHHHHHH---------HHHHHHHHH-HHHHHHT-TSH
T ss_pred HHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHH-HHHHHHh-cCH
Confidence 999998 99999999999 2223455899999 9999998 555
No 500
>PRK14292 chaperone protein DnaJ; Provisional
Probab=35.37 E-value=63 Score=32.48 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=39.3
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhhhcchh----hHHHhhhhHHHHHHHHhhccCchhHHhhHH
Q psy4703 144 NMFKYVFD-TSAPMDKRVTAVNNLVVLAREMSG----AEMLLKSGVAKQINTLLKCETNEEIYLGEE 205 (401)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~g----ae~~~~e~~v~~L~~ll~~~~~~e~~lA~e 205 (401)
++|+.+.. ...+.+.+.++++.|+..+|+|.. ++..|.+ ++..+++|. +++..-.|+
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~--i~~Ay~vL~---d~~~r~~yd 64 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQ--INEAYAVLS---DAEKRAHYD 64 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHH--HHHHHHHhc---chhhhhhHh
Confidence 46777776 567778899999999999998754 4455444 666666665 565544444
Done!