BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4704
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
Length = 448
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 6/73 (8%)
Query: 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAG---DIPVAE 110
V++ E +LSSGF+LE+PQ HA RI+RMIKLGLGI+++D T DD A ++P E
Sbjct: 373 VILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDD--PTADDTSAAVTEEMPPLE 430
Query: 111 GEAEDASRMEEVD 123
G+ +D SRMEEVD
Sbjct: 431 GD-DDTSRMEEVD 442
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 10 LSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWP 58
L L+ T +S S E +DR++R+HG EI+ L+ + +R+PD+V+WP
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLR-EGMFERIPDIVLWP 212
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 10 LSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWP 58
L L+ T +S S E +DR++R+HG EI+ L+ + +R+PD+V+WP
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLR-EGMFERIPDIVLWP 212
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 10 LSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWP 58
L L+ T +S S E +DR++R+HG EI+ L+ + +R+PD+V+WP
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLR-EGMFERIPDIVLWP 212
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 62 VLSSGFTLEEPQVHAARIHRMIKLGLGIE 90
+L+SGF LE+P +A RI+RMIKLGL ++
Sbjct: 397 LLTSGFQLEDPTGYAERINRMIKLGLSLD 425
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 59 EYIVLSSGFTLEEPQVHAARIHRMIKLGLG 88
E +L+SGF+L+EP A+RI+R+I LGL
Sbjct: 648 ETALLTSGFSLDEPTSFASRINRLISLGLN 677
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 59 EYIVLSSGFTLEEPQVHAARIHRMIKLGL 87
E +L+SGF+L+EP A+RI+R+I LGL
Sbjct: 376 ETALLTSGFSLDEPTSFASRINRLISLGL 404
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEV 95
VV++ E L SG+ L + + + RI RM++L L I+ + +V
Sbjct: 400 VVLF-ETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKV 440
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLGIE 90
VV++ E L SG+ L + + + RI RM++L L I+
Sbjct: 627 VVLF-ETATLRSGYLLPDTKAYGDRIERMLRLSLNID 662
>pdb|2BTU|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution.
pdb|2BTU|B Chain B, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution
Length = 346
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 63 LSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVA 109
L G T E P +++ + + +GI D+ ++ TG+ ++AG + +
Sbjct: 134 LIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIG 180
>pdb|1LRW|A Chain A, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
pdb|1LRW|C Chain C, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
Length = 600
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 23 EGEDRLYRSHGQTNTEIYQLKYTS----IMKRMPDVVMWPEYIVLSSGFTLEEPQVHAAR 78
+G+ R +H N +Y L T+ +M D V W + + L +G + +P+
Sbjct: 319 QGQMRKLLTHPDRNGIVYTLDRTNGDLISADKMDDTVNWVKEVQLDTGLPVRDPEFGTRM 378
Query: 79 IHR 81
H+
Sbjct: 379 DHK 381
>pdb|3CY1|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 S279a
Mutant From M. Tuberculosis
Length = 396
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 261 EKPELIPAGVEELLRINLAFADGLPRLATADIQVGDVLVRKGE 303
>pdb|3CY0|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121 S237a Mutant
From Mycobacterium Tuberculosis
Length = 396
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 261 EKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGE 303
>pdb|4G1X|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cyp121 In
Complex With 4-(1h-1,2,4-Triazol-1-Yl)quinolin-6-Amine
pdb|4G2G|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cyp121 In
Complex With 4,4'-(1h-1,2,3-Triazole-1,5-Diyl)diphenol
Length = 395
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 260 EKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGE 302
>pdb|3CXZ|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121 R386l Mutant
From M. Tuberculosis
Length = 396
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 261 EKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGE 303
>pdb|3CXV|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 A233g
Mutant From Mycobacterium Tuberculosis
Length = 396
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 261 EKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGE 303
>pdb|1N40|A Chain A, Atomic Structure Of Cyp121, A Mycobacterial P450
pdb|1N4G|A Chain A, Structure Of Cyp121, A Mycobacterial P450, In Complex With
Iodopyrazole
pdb|2IJ5|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|B Chain B, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|C Chain C, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|D Chain D, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|E Chain E, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|F Chain F, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ7|A Chain A, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|B Chain B, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|C Chain C, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|D Chain D, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|E Chain E, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|F Chain F, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|3G5F|A Chain A, Crystallographic Analysis Of Cytochrome P450 Cyp121
pdb|3G5H|A Chain A, Crystallographic Analysis Of Cytochrome P450 Cyp121
pdb|4G44|A Chain A, Structure Of P450 Cyp121 In Complex With Lead Compound
Mb286, 3-((1h- 1,2,4-Triazol-1-Yl)methyl)aniline
pdb|4G45|A Chain A, Structure Of Cytochrome Cyp121 In Complex With
2-Methylquinolin-6- Amine
pdb|4G46|A Chain A, Structure Of Cytochrome P450 Cyp121 In Complex With
4-Oxo-4,5,6,7- Tetrahydrobenzofuran-3-Carboxylate
pdb|4G47|A Chain A, Structure Of Cytochrome P450 Cyp121 In Complex With
4-(1h-1,2,4- Triazol-1-Yl)phenol
pdb|4G48|A Chain A, Structure Of Cyp121 In Complex With
4-(4-Phenoxy-1h-Pyrazol-3-Yl) Benzene-1,3-Diol
Length = 396
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 261 EKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGE 303
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3M84|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3QTY|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
pdb|3QTY|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
Length = 350
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 61 IVLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDI 106
+ L G T E P V+ A + + GI D + G+++K GDI
Sbjct: 138 VSLVGGETAEXPGVYQAGEIDXVGVITGIVDRKRIINGENIKEGDI 183
>pdb|3CXY|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 P346l
Mutant From M. Tuberculosis
Length = 396
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE 112
E+P++ A + ++++ L D D++ GD+ V +GE
Sbjct: 261 EKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGE 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,535,894
Number of Sequences: 62578
Number of extensions: 138057
Number of successful extensions: 323
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 23
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)