Query psy4704
Match_columns 123
No_of_seqs 171 out of 522
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 23:44:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6m_A Heat shock protein HSP 99.3 6E-13 2.1E-17 114.0 1.0 69 54-123 373-442 (448)
2 4bby_A Alkyldihydroxyacetoneph 99.2 8.7E-12 3E-16 109.2 4.4 56 5-61 160-215 (658)
3 3hjc_A Heat shock protein 83-1 98.6 4.2E-09 1.4E-13 90.1 -0.1 39 54-92 389-427 (444)
4 1sf8_A Chaperone protein HTPG; 98.4 3.1E-08 1.1E-12 71.9 -0.2 62 24-85 51-126 (126)
5 2o1u_A Endoplasmin; GRP94, HSP 98.3 1.2E-07 4.1E-12 84.4 0.9 38 54-91 626-663 (666)
6 2cge_A ATP-dependent molecular 98.1 3.8E-07 1.3E-11 77.0 0.2 35 54-88 371-405 (405)
7 2cg9_A ATP-dependent molecular 98.0 5.2E-07 1.8E-11 80.5 -1.2 39 50-88 638-677 (677)
8 2ioq_A Chaperone protein HTPG; 97.4 2.1E-05 7.2E-10 69.5 -0.2 31 54-84 593-623 (624)
9 2uuu_A Alkyldihydroxyacetoneph 95.8 0.0079 2.7E-07 52.2 4.4 56 5-61 90-147 (584)
10 1e8g_A Vanillyl-alcohol oxidas 66.7 1.3 4.6E-05 37.7 0.4 53 7-61 22-80 (560)
11 2w1v_A Nitrilase-2, nitrilase 65.6 2.6 8.8E-05 31.9 1.7 21 50-72 34-54 (276)
12 3ivz_A Nitrilase; alpha-beta s 62.2 5 0.00017 30.0 2.8 22 50-73 33-54 (262)
13 1f89_A 32.5 kDa protein YLR351 61.8 1.9 6.5E-05 32.8 0.3 19 50-70 44-62 (291)
14 3dd7_B PHD, prevent HOST death 56.2 3.2 0.00011 21.8 0.5 14 26-39 7-20 (23)
15 3p8k_A Hydrolase, carbon-nitro 52.7 11 0.00039 28.6 3.4 20 50-71 52-71 (281)
16 3hkx_A Amidase; alpha-beta-BET 47.8 11 0.00037 28.8 2.6 20 50-71 52-71 (283)
17 3o3m_B Beta subunit 2-hydroxya 45.8 15 0.0005 29.8 3.2 73 7-84 141-217 (385)
18 1f0x_A DLDH, D-lactate dehydro 44.7 15 0.00053 31.6 3.3 50 1-61 4-55 (571)
19 3abf_A 4-oxalocrotonate tautom 36.6 20 0.00067 20.8 2.0 29 63-91 8-36 (64)
20 2dyu_A Formamidase; AMIF, CEK, 34.8 26 0.00087 27.5 2.9 17 51-69 52-68 (334)
21 1otf_A 4-oxalocrotonate tautom 34.3 18 0.0006 20.8 1.5 30 63-92 7-36 (62)
22 2opa_A Probable tautomerase YW 31.4 21 0.00073 20.4 1.5 30 63-92 7-36 (61)
23 3ry0_A Putative tautomerase; o 31.1 21 0.00073 21.1 1.5 30 63-92 7-36 (65)
24 3m20_A 4-oxalocrotonate tautom 30.9 21 0.00072 21.1 1.4 28 65-92 8-35 (62)
25 1uf5_A N-carbamyl-D-amino acid 30.9 16 0.00054 27.6 1.1 18 51-70 38-55 (303)
26 2e11_A Hydrolase; dimethylarse 30.8 37 0.0013 25.1 3.1 17 51-69 35-51 (266)
27 3szu_A ISPH, 4-hydroxy-3-methy 30.3 24 0.0008 29.0 2.0 47 6-54 54-106 (328)
28 2qgq_A Protein TM_1862; alpha- 29.1 83 0.0029 24.0 5.0 78 4-87 98-185 (304)
29 3n05_A NH(3)-dependent NAD(+) 28.8 46 0.0016 28.3 3.7 21 50-72 36-56 (590)
30 2exr_A Cytokinin dehydrogenase 28.2 26 0.00089 29.5 2.0 46 5-61 26-71 (524)
31 3dnf_A ISPH, LYTB, 4-hydroxy-3 28.1 21 0.00073 28.8 1.4 47 6-54 43-94 (297)
32 2vhh_A CG3027-PA; hydrolase; 2 27.7 41 0.0014 27.2 3.1 17 51-69 112-128 (405)
33 2x4k_A 4-oxalocrotonate tautom 27.3 26 0.0009 19.8 1.4 29 63-91 10-38 (63)
34 2uxy_A Aliphatic amidase; nitr 24.9 39 0.0013 26.5 2.4 17 51-69 51-67 (341)
35 3m21_A Probable tautomerase HP 24.7 32 0.0011 20.5 1.5 27 66-92 13-39 (67)
36 2fok_A R.FOKI, FOKI restrictio 24.1 59 0.002 28.7 3.5 35 49-85 446-491 (579)
37 3ilv_A Glutamine-dependent NAD 24.0 63 0.0021 27.9 3.7 21 50-72 37-57 (634)
38 3mb2_A 4-oxalocrotonate tautom 22.5 37 0.0013 20.5 1.5 30 63-92 8-37 (72)
39 3ej9_A Alpha-subunit of trans- 22.1 38 0.0013 21.0 1.5 30 63-92 8-37 (76)
40 3ahu_A Protein HFQ; SM-like mo 21.4 37 0.0013 22.3 1.4 39 3-62 9-47 (78)
No 1
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=99.27 E-value=6e-13 Score=113.98 Aligned_cols=69 Identities=54% Similarity=0.846 Sum_probs=34.2
Q ss_pred eEeeccccccccCCCCCChHHHHHHHHHHHHhcCCCCcccccccCC-CCCCCCCCCCCCccccccccccCC
Q psy4704 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGD-DVKAGDIPVAEGEAEDASRMEEVD 123 (123)
Q Consensus 54 ~vllpetAlL~SGF~ledp~~Fa~RI~~m~~~~L~i~~~~~~~~~e-~~~~~e~p~~e~~~~~~s~~EevD 123 (123)
+.++|++|+|+|||+|+||+.|++||++||++||||+.++.+.+++ +.++++.|+.+..+ +++.|++||
T Consensus 373 ~~lLyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 442 (448)
T 3q6m_A 373 VILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDD-DTSRMEEVD 442 (448)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCCCc-chhhhhhhc
Confidence 6799999999999999999999999999999999999544332222 33455667777764 788999986
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.19 E-value=8.7e-12 Score=109.21 Aligned_cols=56 Identities=36% Similarity=0.727 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcccccccchhhhhhhccCchHHHHHHhhcCCccccccceEeecccc
Q psy4704 5 LQRSVLSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYI 61 (123)
Q Consensus 5 ~~~~fl~~l~~~~~~~s~d~~dRl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetA 61 (123)
++++|+++|+..+..+|+|..|||+|+||||++|++.+|.|.| +|+||+||+|.|.
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~r~~h~~g~s~~d~~~~~~g~~-~~~P~aVV~P~s~ 215 (658)
T 4bby_A 160 VNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMF-ERIPDIVLWPTCH 215 (658)
T ss_dssp CCHHHHHHHHHHTCEEECCHHHHHHTSCCSCHHHHHHHHSSCC-SCCCSEEEECCSH
T ss_pred CCHHHHHHHHHhcccccCchHHHhhhcCCCCHHHHHHHhCCcc-cCCcCEEEeeCCH
Confidence 6799999999988899999999999999999999999999999 8999999999875
No 3
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=98.61 E-value=4.2e-09 Score=90.10 Aligned_cols=39 Identities=49% Similarity=0.783 Sum_probs=34.3
Q ss_pred eEeeccccccccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 54 ~vllpetAlL~SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
+.++|++|+|++||+++||+.|++||++||++||||+.+
T Consensus 389 ~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 389 VFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEE 427 (444)
T ss_dssp HHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 689999999999999999999999999999999999853
No 4
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=98.40 E-value=3.1e-08 Score=71.88 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=43.4
Q ss_pred hhhhhhhccCchH------------HH-HHHhhcCCccccccc-eEeeccccccccCCCCCChHHHHHHHHHHHHh
Q psy4704 24 GEDRLYRSHGQTN------------TE-IYQLKYTSIMKRMPD-VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKL 85 (123)
Q Consensus 24 ~~dRl~r~HGhtl------------~d-i~~LR~g~~~~Ripd-~vllpetAlL~SGF~ledp~~Fa~RI~~m~~~ 85 (123)
.+.|++++.|+.. |. |-.|+...=.+.+.| +.++|++|+|++||+++||+.|++||++||.+
T Consensus 51 ~Merimka~~~~~~~~k~~LEINp~HplIk~L~~~~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~~ 126 (126)
T 1sf8_A 51 QMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS 126 (126)
T ss_dssp HHHHHHHTTTSCCCCCCCEEEECTTSHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccccccCCeeeeECCCCHHHHHHHHhcChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHhC
Confidence 3679999988641 00 223321110022334 67999999999999999999999999999863
No 5
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.29 E-value=1.2e-07 Score=84.44 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=35.2
Q ss_pred eEeeccccccccCCCCCChHHHHHHHHHHHHhcCCCCc
Q psy4704 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLGIED 91 (123)
Q Consensus 54 ~vllpetAlL~SGF~ledp~~Fa~RI~~m~~~~L~i~~ 91 (123)
+.++|++|+|++||+++||+.|++||++||.++||++.
T Consensus 626 ~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~ 663 (666)
T 2o1u_A 626 AVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDP 663 (666)
T ss_dssp HHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCc
Confidence 68999999999999999999999999999999999984
No 6
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.8e-07 Score=76.97 Aligned_cols=35 Identities=46% Similarity=0.758 Sum_probs=33.4
Q ss_pred eEeeccccccccCCCCCChHHHHHHHHHHHHhcCC
Q psy4704 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLG 88 (123)
Q Consensus 54 ~vllpetAlL~SGF~ledp~~Fa~RI~~m~~~~L~ 88 (123)
+.++|++|+|++||+++||+.|++||++||.++||
T Consensus 371 ~~~Lyd~AlL~~G~~~~dp~~f~~r~~~ll~~~l~ 405 (405)
T 2cge_A 371 TKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 405 (405)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999998876
No 7
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.00 E-value=5.2e-07 Score=80.51 Aligned_cols=39 Identities=44% Similarity=0.727 Sum_probs=35.1
Q ss_pred cccc-eEeeccccccccCCCCCChHHHHHHHHHHHHhcCC
Q psy4704 50 RMPD-VVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGLG 88 (123)
Q Consensus 50 Ripd-~vllpetAlL~SGF~ledp~~Fa~RI~~m~~~~L~ 88 (123)
.+-| +.++|++|+|+|||+++||+.|++||++||+++||
T Consensus 638 ~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 638 TVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp SSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 3444 68999999999999999999999999999998876
No 8
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=97.40 E-value=2.1e-05 Score=69.53 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=29.8
Q ss_pred eEeeccccccccCCCCCChHHHHHHHHHHHH
Q psy4704 54 VVMWPEYIVLSSGFTLEEPQVHAARIHRMIK 84 (123)
Q Consensus 54 ~vllpetAlL~SGF~ledp~~Fa~RI~~m~~ 84 (123)
+.++|++|+|++||+++||+.|++||++||.
T Consensus 593 ~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 593 VELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp HHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 6899999999999999999999999999986
No 9
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=95.80 E-value=0.0079 Score=52.24 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhc--ccccccchhhhhhhccCchHHHHHHhhcCCccccccceEeecccc
Q psy4704 5 LQRSVLSLLEDT--GVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYI 61 (123)
Q Consensus 5 ~~~~fl~~l~~~--~~~~s~d~~dRl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetA 61 (123)
++.+|+++|+.. +..+++|..+|+.++|+.++.+.+.+|.|.+ ...|+++++|.+.
T Consensus 90 ~~~~~~~~L~~~l~g~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~-~~~p~~vv~P~s~ 147 (584)
T 2uuu_A 90 QYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQV-KNAPDLIVLPHSH 147 (584)
T ss_dssp CCHHHHHHHHTTSCGGGEECSHHHHHHTTCCSSHHHHHHHHTTCC-CCCCSEEECCCSH
T ss_pred CCHHHHHHHHhhcCCCeEEECHHHHHHhccCCchhhhhhhccCcc-CCCCCEEEeCCCH
Confidence 467899999963 4568999999999999999999999999988 6899999999874
No 10
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=66.72 E-value=1.3 Score=37.69 Aligned_cols=53 Identities=4% Similarity=0.023 Sum_probs=35.1
Q ss_pred HHHHHHHHhc-c-cccccchhhhhh----hccCchHHHHHHhhcCCccccccceEeecccc
Q psy4704 7 RSVLSLLEDT-G-VSLSTEGEDRLY----RSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYI 61 (123)
Q Consensus 7 ~~fl~~l~~~-~-~~~s~d~~dRl~----r~HGhtl~di~~LR~g~~~~Ripd~vllpetA 61 (123)
+.|+++|+.. + ..+++|..+|.. .+++++.+|.+..+ +.+ ...|++|++|.+.
T Consensus 22 ~~~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~-~~~-~~~p~~Vv~P~s~ 80 (560)
T 1e8g_A 22 NEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVM-DQD-YFLASAIVAPRNV 80 (560)
T ss_dssp HHHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCS-CTT-SSCCSEEECCSSH
T ss_pred HHHHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccc-ccc-ccCCcEEEeCCCH
Confidence 4678888863 4 358888888888 56777777777665 445 5789999999874
No 11
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=65.65 E-value=2.6 Score=31.87 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=16.6
Q ss_pred cccceEeeccccccccCCCCCCh
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLEEP 72 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~ledp 72 (123)
.=+|++||||+++ +||..++-
T Consensus 34 ~gadlvv~PE~~~--~gy~~~~~ 54 (276)
T 2w1v_A 34 QGANIVSLPECFN--SPYGTTYF 54 (276)
T ss_dssp TTCSEEECCTTTT--SCCSTTTH
T ss_pred CCCCEEEcCCCcc--cCCCHHHH
Confidence 3479999999987 69977653
No 12
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=62.18 E-value=5 Score=30.05 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.5
Q ss_pred cccceEeeccccccccCCCCCChH
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLEEPQ 73 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~ledp~ 73 (123)
.=+|++||||+++ +||...++.
T Consensus 33 ~gadlvvfPE~~~--~gy~~~~~~ 54 (262)
T 3ivz_A 33 QGAQLVVLPELFD--TGYNFETRE 54 (262)
T ss_dssp TTCSEEECCTTTT--TCSCCSCHH
T ss_pred CCCCEEEeCCCcc--cCCCCCCHH
Confidence 3479999999886 699887653
No 13
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=61.78 E-value=1.9 Score=32.80 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.4
Q ss_pred cccceEeeccccccccCCCCC
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLE 70 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~le 70 (123)
.=+|++||||+++ +||..+
T Consensus 44 ~gadlvv~PE~~~--~g~~~~ 62 (291)
T 1f89_A 44 PDTKLVVLPECFN--SPYSTD 62 (291)
T ss_dssp TTEEEEECCTTTT--SCSCHH
T ss_pred CCCeEEEcCCCcc--cCCChH
Confidence 3479999999998 799653
No 14
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=56.15 E-value=3.2 Score=21.81 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.4
Q ss_pred hhhhhccCchHHHH
Q psy4704 26 DRLYRSHGQTNTEI 39 (123)
Q Consensus 26 dRl~r~HGhtl~di 39 (123)
+=||-.||||+.++
T Consensus 7 aaIm~~hg~t~~~L 20 (23)
T 3dd7_B 7 ASLFDTLDSTNKEM 20 (26)
T ss_pred HHHHHHHhHHHHHH
Confidence 35888999999876
No 15
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=52.69 E-value=11 Score=28.62 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=16.5
Q ss_pred cccceEeeccccccccCCCCCC
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLEE 71 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~led 71 (123)
.=+|++||||+++ +||..++
T Consensus 52 ~gadlvvfPE~~l--~gy~~~~ 71 (281)
T 3p8k_A 52 AEVDVVVLPEMWN--NGYDLEH 71 (281)
T ss_dssp TTCCEEECCSSTT--TTTCGGG
T ss_pred CCCcEEEcCCCcc--CCCChhH
Confidence 4589999999987 4998875
No 16
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=47.82 E-value=11 Score=28.76 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.2
Q ss_pred cccceEeeccccccccCCCCCC
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLEE 71 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~led 71 (123)
.=+|++||||+++ +||...+
T Consensus 52 ~gadlvvfPE~~l--~gy~~~d 71 (283)
T 3hkx_A 52 QGAQLLLTPELFG--FGYVPSQ 71 (283)
T ss_dssp TTCSEEECCTTGG--GCSCHHH
T ss_pred CCCCEEEcCCCcc--cCCChHH
Confidence 3479999999997 5998764
No 17
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=45.77 E-value=15 Score=29.78 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=48.8
Q ss_pred HHHHHHHHh-cccccccchhh---hhhhccCchHHHHHHhhcCCccccccceEeeccccccccCCCCCChHHHHHHHHHH
Q psy4704 7 RSVLSLLED-TGVSLSTEGED---RLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYIVLSSGFTLEEPQVHAARIHRM 82 (123)
Q Consensus 7 ~~fl~~l~~-~~~~~s~d~~d---Rl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetAlL~SGF~ledp~~Fa~RI~~m 82 (123)
+.|++.|++ +|..++.+... ++.+.+-.-+++++.||..+- ..|.-..++ .++.++|.+ ++..+...+..+
T Consensus 141 ~~l~~~LE~~tG~~i~~e~L~eai~~~N~~r~~~~~~~~l~~~~p-~pisg~d~~---~~~~~~~~~-~~~~~~~~~~~l 215 (385)
T 3o3m_B 141 KGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHS-NTIKPSIRS---LVIKSGFFM-RKEEHTELVKDL 215 (385)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TTSCHHHHH---HHHHGGGGS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCHHHHH---HHHHhheeC-CHHHHHHHHHHH
Confidence 567777776 68899988877 555567888999999996542 122221111 124667776 888888777776
Q ss_pred HH
Q psy4704 83 IK 84 (123)
Q Consensus 83 ~~ 84 (123)
+.
T Consensus 216 ~~ 217 (385)
T 3o3m_B 216 IA 217 (385)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 18
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=44.70 E-value=15 Score=31.65 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHhc-c-cccccchhhhhhhccCchHHHHHHhhcCCccccccceEeecccc
Q psy4704 1 MSTSLQRSVLSLLEDT-G-VSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYI 61 (123)
Q Consensus 1 ~~~~~~~~fl~~l~~~-~-~~~s~d~~dRl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetA 61 (123)
|+|.-.++|+++|+.. + -.+..+..+|..++++.+ .+ ...|+++++|.|.
T Consensus 4 ~~~~~~~~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~----------~~-~~~p~~Vv~P~s~ 55 (571)
T 1f0x_A 4 MTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFR----------SG-QGDALAVVFPGSL 55 (571)
T ss_dssp -----CHHHHHHHHHHHCGGGEECCHHHHHHHHBCSS----------SC-BBCCSEEECCSSH
T ss_pred cCCcchHHHHHHHHHhcCCCeEEcCHHHHHHHhcccc----------cc-CCCccEEEeeCCH
Confidence 5566677899999973 4 467888888888888754 13 4789999999764
No 19
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=36.60 E-value=20 Score=20.80 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=25.3
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIED 91 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~ 91 (123)
+..|.+.+....|++.|.+.+...||++.
T Consensus 8 ~~~g~s~eqk~~l~~~lt~~l~~~lg~~~ 36 (64)
T 3abf_A 8 LLEGRPPEKKRELVRRLTEMASRLLGEPY 36 (64)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34588888899999999999999999984
No 20
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=34.78 E-value=26 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=13.2
Q ss_pred ccceEeeccccccccCCCC
Q psy4704 51 MPDVVMWPEYIVLSSGFTL 69 (123)
Q Consensus 51 ipd~vllpetAlL~SGF~l 69 (123)
=+|++||||+++ +||..
T Consensus 52 gadLVVfPE~~l--~G~~~ 68 (334)
T 2dyu_A 52 GVELIIFPEYST--QGLNT 68 (334)
T ss_dssp TEEEEECCTTTT--TCCCT
T ss_pred CCcEEEcCCCcc--ccCCC
Confidence 379999999886 47654
No 21
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=34.27 E-value=18 Score=20.79 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=25.9
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
+..|.+.+.-+.+++.|...+...||++.+
T Consensus 7 ~~~grs~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 7 IIEGRTDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 446888899999999999999999999853
No 22
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=31.37 E-value=21 Score=20.41 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.7
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
+..|.+.+.-+.+++.|...+...||++.+
T Consensus 7 ~~~grs~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 7 MLEGRTDEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 446888889999999999999999998853
No 23
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=31.13 E-value=21 Score=21.12 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=26.1
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
+..|.+.+.-..++..|.+.+...+|++.+
T Consensus 7 ~~~Grs~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 7 LLEGRSPQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 346899999999999999999999999853
No 24
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=30.91 E-value=21 Score=21.11 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=25.5
Q ss_pred cCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 65 SGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 65 SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
.|++.+.-..++..|.+.+...||++.+
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~lg~~~~ 35 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIYGMDRS 35 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 7999999999999999999999998853
No 25
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=30.88 E-value=16 Score=27.57 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=14.0
Q ss_pred ccceEeeccccccccCCCCC
Q psy4704 51 MPDVVMWPEYIVLSSGFTLE 70 (123)
Q Consensus 51 ipd~vllpetAlL~SGF~le 70 (123)
=+|++||||+++- ||...
T Consensus 38 gadlvv~PE~~~~--gy~~~ 55 (303)
T 1uf5_A 38 GANFIVFPELALT--TFFPR 55 (303)
T ss_dssp TCSEEECCTTTTS--CCGGG
T ss_pred CCCEEEecccccc--CCCcc
Confidence 4799999998864 88643
No 26
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=30.81 E-value=37 Score=25.12 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=13.6
Q ss_pred ccceEeeccccccccCCCC
Q psy4704 51 MPDVVMWPEYIVLSSGFTL 69 (123)
Q Consensus 51 ipd~vllpetAlL~SGF~l 69 (123)
=+|++||||+++- ||..
T Consensus 35 gadlvv~PE~~~~--gy~~ 51 (266)
T 2e11_A 35 QSDLVILPETFTS--GFSN 51 (266)
T ss_dssp TCSEEECCTTTTT--CSCS
T ss_pred CCCEEECCCCccc--cCCh
Confidence 4799999998864 8853
No 27
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=30.27 E-value=24 Score=28.96 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcccccccchh------hhhhhccCchHHHHHHhhcCCccccccce
Q psy4704 6 QRSVLSLLEDTGVSLSTEGE------DRLYRSHGQTNTEIYQLKYTSIMKRMPDV 54 (123)
Q Consensus 6 ~~~fl~~l~~~~~~~s~d~~------dRl~r~HGhtl~di~~LR~g~~~~Ripd~ 54 (123)
|..-++.|++.|+.+-.+-. -=|+|+||-+.+..-.++.-++ +|.|+
T Consensus 54 N~~Vv~~L~~~Gv~~ve~l~ev~~g~~VIirAHGv~~~v~~~a~~rgl--~iiDA 106 (328)
T 3szu_A 54 NRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDL--TVFDA 106 (328)
T ss_dssp CHHHHHHHHHTTEEEESSGGGSCTTCEEEECTTCCCHHHHHHHHHTTC--EEEEC
T ss_pred CHHHHHHHHHCCCEEecchhhCCCCCEEEEECCCCCHHHHHHHHHCCC--EEEEC
Confidence 67788999988875543321 1489999999999999987665 45553
No 28
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=29.14 E-value=83 Score=24.00 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcc-----cccccch-----hhhhhhccCchHHHHHHhhcCCccccccceEeeccccccccCCCCCChH
Q psy4704 4 SLQRSVLSLLEDTG-----VSLSTEG-----EDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYIVLSSGFTLEEPQ 73 (123)
Q Consensus 4 ~~~~~fl~~l~~~~-----~~~s~d~-----~dRl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetAlL~SGF~ledp~ 73 (123)
.+++++++.|++.+ +.++.+. ..++.| ++|..++..+=.- +.+.+|++.+ ++-+--||.=++..
T Consensus 98 ~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r--~~t~e~~~~~i~~-l~~~~~gi~i---~~~~IvG~PgEt~e 171 (304)
T 2qgq_A 98 HLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGR--TKSSEELKKMLSS-IRERFPDAVL---RTSIIVGFPGETEE 171 (304)
T ss_dssp GCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTC--CSCHHHHHHHHHH-HHHHCTTCEE---EEEEEECCTTCCHH
T ss_pred cCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCC--CCCHHHHHHHHHH-HHhhCCCCEE---EEEEEEeCCCCCHH
Confidence 46788999999765 3344333 224433 6787776532111 2123466544 23345599999999
Q ss_pred HHHHHHHHHHHhcC
Q psy4704 74 VHAARIHRMIKLGL 87 (123)
Q Consensus 74 ~Fa~RI~~m~~~~L 87 (123)
+|..-+.-+.+++.
T Consensus 172 d~~~t~~~l~~l~~ 185 (304)
T 2qgq_A 172 DFEELKQFVEEIQF 185 (304)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 99888877766554
No 29
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=28.84 E-value=46 Score=28.30 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=17.3
Q ss_pred cccceEeeccccccccCCCCCCh
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLEEP 72 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~ledp 72 (123)
+=+|++||||.++ +||..+|.
T Consensus 36 ~gadLvvfPEl~l--tGy~~~dl 56 (590)
T 3n05_A 36 QGAHLVAFPEMAL--TGYPVEDL 56 (590)
T ss_dssp TTCSEEECCTTTT--TCSCCGGG
T ss_pred CCCCEEEcCcccc--cCCChHHH
Confidence 4579999999985 69998874
No 30
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=28.24 E-value=26 Score=29.48 Aligned_cols=46 Identities=13% Similarity=-0.094 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcccccccchhhhhhhccCchHHHHHHhhcCCccccccceEeecccc
Q psy4704 5 LQRSVLSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYI 61 (123)
Q Consensus 5 ~~~~fl~~l~~~~~~~s~d~~dRl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetA 61 (123)
|-..|+++|+ ..-.+++|..+|..+++-- .+.+ ...|+++++|.+.
T Consensus 26 ~~~~~~~~l~-~~~~v~~d~~~~~~~~~d~---------~~~~-~~~P~~vv~P~s~ 71 (524)
T 2exr_A 26 STDGVSESLN-IQGEILCGGAAADIAGRDF---------GGMN-CVKPLAVVRPVGP 71 (524)
T ss_dssp --------CC-CSSEEECSHHHHHHHTCCT---------TCCC-CCCCSEEEECSSH
T ss_pred cHHHHHHhcC-CCCeEEeCHHHHHHHhccc---------cccc-cCCCCEEEecCCH
Confidence 3456777777 5556888888888776532 1335 5789999999873
No 31
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=28.07 E-value=21 Score=28.80 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccccccc-----hhhhhhhccCchHHHHHHhhcCCccccccce
Q psy4704 6 QRSVLSLLEDTGVSLSTE-----GEDRLYRSHGQTNTEIYQLKYTSIMKRMPDV 54 (123)
Q Consensus 6 ~~~fl~~l~~~~~~~s~d-----~~dRl~r~HGhtl~di~~LR~g~~~~Ripd~ 54 (123)
|..-++.|++.|+.+-.+ +.-=|+|+||-+.+..-.++.-++ +|-|+
T Consensus 43 N~~Vv~~L~~~Gv~~v~~~ev~~g~~VIirAHGv~~~v~~~a~~rgl--~iiDA 94 (297)
T 3dnf_A 43 NPQEVNRLKNLGVFPSQGEEFKEGDTVIIRSHGIPPEKEEALRKKGL--KVIDA 94 (297)
T ss_dssp CHHHHHHHHHHTEEECCSSCCCTTCEEEECTTCCCHHHHHHHHHTTC--EEEEC
T ss_pred CHHHHHHHHhCCCEEechhhCCCCCEEEEECCCCCHHHHHHHHHCCC--EEEeC
Confidence 677889999888755543 112489999999999999987665 45553
No 32
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=27.74 E-value=41 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=13.8
Q ss_pred ccceEeeccccccccCCCC
Q psy4704 51 MPDVVMWPEYIVLSSGFTL 69 (123)
Q Consensus 51 ipd~vllpetAlL~SGF~l 69 (123)
=+|++||||+++ +||.+
T Consensus 112 gadLVVfPE~~l--~gy~~ 128 (405)
T 2vhh_A 112 GCNIVCTQEAWT--MPFAF 128 (405)
T ss_dssp TCSEEECCTTTT--SCSCC
T ss_pred CCCEEEcCCccc--ccccc
Confidence 379999999987 48854
No 33
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=27.33 E-value=26 Score=19.80 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=25.1
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIED 91 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~ 91 (123)
+..|.+.+....+++.|.+.+...||++.
T Consensus 10 ~~~g~s~e~k~~l~~~l~~~l~~~lg~p~ 38 (63)
T 2x4k_A 10 LLEGRSDEQLKNLVSEVTDAVEKTTGANR 38 (63)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 44588888899999999999999999884
No 34
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=24.91 E-value=39 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=13.4
Q ss_pred ccceEeeccccccccCCCC
Q psy4704 51 MPDVVMWPEYIVLSSGFTL 69 (123)
Q Consensus 51 ipd~vllpetAlL~SGF~l 69 (123)
=+|++||||+++ +||..
T Consensus 51 gadLVVfPE~~l--~G~~~ 67 (341)
T 2uxy_A 51 GMDLVVFPEYSL--QGIMY 67 (341)
T ss_dssp TEEEEECCTTTT--TBCCC
T ss_pred CCcEEEeCCCcc--cccCC
Confidence 479999999886 48754
No 35
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=24.66 E-value=32 Score=20.45 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 66 GFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 66 GF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
|.+.+.-..++..|...+...||++.+
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~ 39 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKA 39 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 899999999999999999999999853
No 36
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=24.11 E-value=59 Score=28.66 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=30.1
Q ss_pred ccccceEeec-----------cccccccCCCCCChHHHHHHHHHHHHh
Q psy4704 49 KRMPDVVMWP-----------EYIVLSSGFTLEEPQVHAARIHRMIKL 85 (123)
Q Consensus 49 ~Ripd~vllp-----------etAlL~SGF~ledp~~Fa~RI~~m~~~ 85 (123)
.|=||+++|+ +|=+-+.||++ |...|.+++|-|+.
T Consensus 446 srKPDg~iy~~~~~d~~gvIiDnKAYs~GYsl--~i~qaDeM~RYIee 491 (579)
T 2fok_A 446 SRKPDGAIYTVGSPIDYGVIVDTKAYSGGYNL--PIGQADEMQRYVEE 491 (579)
T ss_dssp SSSCSEEEECSSSSSCCEEEEEEECCSSCBCC--CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecccCCCceEEEechhhccCcCC--chhhHHHHHHHHHh
Confidence 5999999999 78888999998 56778999998874
No 37
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=24.01 E-value=63 Score=27.90 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=16.9
Q ss_pred cccceEeeccccccccCCCCCCh
Q psy4704 50 RMPDVVMWPEYIVLSSGFTLEEP 72 (123)
Q Consensus 50 Ripd~vllpetAlL~SGF~ledp 72 (123)
+=+|++||||+++ +||..+|.
T Consensus 37 ~gadLvVfPEl~l--tGY~~~dl 57 (634)
T 3ilv_A 37 ANVEILCLPELCI--TGYGCEDL 57 (634)
T ss_dssp TTCSEEECCTTTT--TCSCCGGG
T ss_pred CCCcEEEcCCCcc--ccCChHHH
Confidence 3479999999875 59998874
No 38
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.47 E-value=37 Score=20.53 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=26.0
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
+..|.+.+.-..++..|...+...||++.+
T Consensus 8 ~~~grs~eqK~~L~~~it~~l~~~lg~p~~ 37 (72)
T 3mb2_A 8 MLEGRSTEQKAELARALSAAAAAAFDVPLA 37 (72)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 346899999999999999999999999853
No 39
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=22.11 E-value=38 Score=20.97 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=26.1
Q ss_pred cccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q psy4704 63 LSSGFTLEEPQVHAARIHRMIKLGLGIEDE 92 (123)
Q Consensus 63 L~SGF~ledp~~Fa~RI~~m~~~~L~i~~~ 92 (123)
+..|.+.+.-..++..|...+...+|++.+
T Consensus 8 ~~~Grs~eqK~~L~~~it~~l~~~lg~p~~ 37 (76)
T 3ej9_A 8 MRYGRTDEQKRALSAGLLRVISEATGEPRE 37 (76)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 446899999999999999999999998853
No 40
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=21.42 E-value=37 Score=22.31 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhcccccccchhhhhhhccCchHHHHHHhhcCCccccccceEeeccccc
Q psy4704 3 TSLQRSVLSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYIV 62 (123)
Q Consensus 3 ~~~~~~fl~~l~~~~~~~s~d~~dRl~r~HGhtl~di~~LR~g~~~~Ripd~vllpetAl 62 (123)
.+||+.||+.|+..+++++. -|.+| + |+...+.+||.-.
T Consensus 9 ~nlQd~fLn~lrk~~~~Vtv------------------~L~nG-~--~l~G~I~~fD~f~ 47 (78)
T 3ahu_A 9 INIQDQFLNQIRKENTYVTV------------------FLLNG-F--QLRGQVKGFDNFT 47 (78)
T ss_dssp -CHHHHHHHHHHHHTCCEEE------------------EETTS-C--EEEEEEEEECSSE
T ss_pred cChHHHHHHHHHHcCCcEEE------------------EEeCC-e--EEEEEEEEEcceE
Confidence 46899999999976666643 24455 3 6666666766543
Done!