RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4704
(123 letters)
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 67.0 bits (164), Expect = 2e-14
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 62 VLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEE 121
+LSSGF+LE+PQ HA RI+RMIKLGLGI+++D A + +D SRMEE
Sbjct: 381 LLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEE 440
Query: 122 VD 123
VD
Sbjct: 441 VD 442
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 51.2 bits (123), Expect = 7e-09
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 62 VLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAE 110
+L+SGF LE+P +A RI+RMIKLGL +++E+E A + + AE
Sbjct: 397 LLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA--AEAPVAETAPAE 443
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 43.4 bits (103), Expect = 4e-06
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 62 VLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDE 94
L SG+ L + + + RI RM++L L I+ + +
Sbjct: 634 TLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAK 666
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 40.7 bits (96), Expect = 3e-05
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 62 VLSSGFTLEEPQVHAARIHRMIKLGL 87
+L+SGF+L+EP A+RI+R+I LGL
Sbjct: 379 LLTSGFSLDEPTSFASRINRLISLGL 404
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 39.4 bits (92), Expect = 9e-05
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 62 VLSSGFTLEEPQVHAARIHRMIKLGL 87
+L+SGF+L+EP A+RI+R+I LGL
Sbjct: 651 LLTSGFSLDEPTSFASRINRLISLGL 676
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 37.0 bits (86), Expect = 7e-04
Identities = 7/40 (17%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 20 LSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPE 59
L + R+ + G++ ++ +++ + K PD+++ P
Sbjct: 107 LKDDKLARITHTFGKSLRDLIRVRIGQV-KNAPDLIVLPH 145
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 32.6 bits (75), Expect = 0.013
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 62 VLSSGFTLEEPQVHAARIHRMI 83
+L+ TLE+P + R+++++
Sbjct: 103 LLAERGTLEDPNLFIRRMNQLL 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.13
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 7 RSVLSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYIVLSSG 66
R + +G L+T + + Y+ + N Y+ +I+ D + E ++ S
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL----DFLPKIEENLICSK 563
Query: 67 FTLEEPQVHAARIHRMIKLGLGIEDE 92
+T ++++ L EDE
Sbjct: 564 YT------------DLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.97
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 31/103 (30%)
Query: 11 SLLEDTGVSLSTEGEDRLY----RSHGQTNTEIY--QLK-----YTSIMKRMPDVVMWPE 59
+L EG +L GQ NT+ Y +L+ Y ++
Sbjct: 144 ALFRA-----VGEGNAQLVAIFG---GQGNTDDYFEELRDLYQTYHVLVGD--------- 186
Query: 60 YIVLSSGFTLEEPQVHAARIHRMIKLGLGIED--EDEVATGDD 100
++ S TL E ++ GL I + E+ T D
Sbjct: 187 -LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 26.0 bits (58), Expect = 4.4
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 62 VLSSGFTLEEPQVHAARIHRMI 83
+L+ TLE+P + R+++++
Sbjct: 601 LLAERGTLEDPNLFIRRMNQLL 622
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 25.6 bits (57), Expect = 5.8
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 88 GIEDEDEVATGDDVKAGDI 106
G+ +++ + TG+ ++AGD
Sbjct: 161 GVAEKERLITGETIQAGDA 179
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
PDB: 3qty_A*
Length = 350
Score = 25.2 bits (56), Expect = 7.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 88 GIEDEDEVATGDDVKAGDI 106
GI D + G+++K GDI
Sbjct: 165 GIVDRKRIINGENIKEGDI 183
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 25.2 bits (56), Expect = 7.9
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 88 GIEDEDEVATGDDVKAGDI 106
GI D+ ++ TG+ ++AG +
Sbjct: 159 GIVDKKKIVTGEKIEAGHV 177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.357
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,869,218
Number of extensions: 109514
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 30
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)