RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4704
         (123 letters)



>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score = 29.1 bits (65), Expect = 0.074
 Identities = 6/25 (24%), Positives = 16/25 (64%)

Query: 59  EYIVLSSGFTLEEPQVHAARIHRMI 83
           +  +L+   TLE+P +   R+++++
Sbjct: 89  DQALLAERGTLEDPNLFIRRMNQLL 113


>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida
           [TaxId: 303]}
          Length = 227

 Score = 28.8 bits (63), Expect = 0.15
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 28  LYRSHGQTNTEIYQLKYTSIMKRMPDVVMWPEYIVLSSGFTLEEPQVHAARIHRMIKLGL 87
           L +  G   +     + ++ +        W E + L+                     G+
Sbjct: 154 LAQQFGIPMSSHLFQEISAHLLAATPTAHWLERLDLAGSVIEPTLTFEGGNAVIPDLPGV 213

Query: 88  GIE-DEDEVA 96
           GI   E E+ 
Sbjct: 214 GIIWREKEIG 223


>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase
          (ATP-PRTase, HisG), catalytic domain {Thermus
          thermophilus [TaxId: 274]}
          Length = 206

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 6/48 (12%), Positives = 17/48 (35%)

Query: 4  SLQRSVLSLLEDTGVSLSTEGEDRLYRSHGQTNTEIYQLKYTSIMKRM 51
           + R    +L+  G+ L     +R      +    + +L+   +   +
Sbjct: 14 RMFREAYEVLKRAGLDLPEVEGERTLLHGKEGGVALLELRNKDVPIYV 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,943
Number of extensions: 18510
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 5
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)