BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4705
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 89/114 (78%)
Query: 29 KVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLG 88
K ES N++EL+AR+LNA+ +ELRG +VQ+G KAL+ +A GT KGKR A Q LAR+G
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564
Query: 89 ITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQR 142
IT+NPEV+F G+RSL+V+RPLL+LL + TALE FE LMAL NLA++ E RQR
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR 618
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 2 LRRAATQTMTNMIVSEDVIKIYEANKDKVE 31
L RAA Q + N+++SEDVIK++E N D+V+
Sbjct: 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 32.7 bits (73), Expect = 0.094, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 32 SDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKG---KRQAAQGLARLG 88
S N ++ + RI+ + + + QQGA K ++ N G + + L R+
Sbjct: 470 SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529
Query: 89 ITLNPEVAFPGERSLEVVRPLLSLLHPEATAL--------------ETFEGLMALCNLAA 134
I NP + F +L + P L L P +T + + +E L+AL NLA+
Sbjct: 530 IFTNPGLIFKKYSALNAI-PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS 588
>pdb|3B7A|A Chain A, Complex Of S52a Substituted Droposphila Lush Protein With
Ethanol
pdb|3B7A|B Chain B, Complex Of S52a Substituted Droposphila Lush Protein With
Ethanol
Length = 124
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 9 TMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHL 68
TM + S D+I+ A K K+++++ L N SQ LM +K + +
Sbjct: 2 TMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQD----LMCY---TKCVALM 54
Query: 69 AHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVR 107
A KG+ A + LA+L + PE+ +S+E R
Sbjct: 55 AGTVNKKGEFNAPKALAQLPHLVPPEMMEMSRKSVEACR 93
>pdb|3B6X|A Chain A, Complex Of S52a Substituted Drosophila Lush Protein With
Butanol
pdb|3B6X|B Chain B, Complex Of S52a Substituted Drosophila Lush Protein With
Butanol
Length = 125
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 9 TMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHL 68
TM + S D+I+ A K K+++++ L N SQ LM +K + +
Sbjct: 3 TMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQD----LMCY---TKCVALM 55
Query: 69 AHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVR 107
A KG+ A + LA+L + PE+ +S+E R
Sbjct: 56 AGTVNKKGEFNAPKALAQLPHLVPPEMMEMSRKSVEACR 94
>pdb|3B86|A Chain A, Crystal Structure Of T57s Substituted Lush Protein
Complexed With Ethanol
pdb|3B86|B Chain B, Crystal Structure Of T57s Substituted Lush Protein
Complexed With Ethanol
Length = 124
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 9 TMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHL 68
TM + S D+I+ A K K+++++ L N SQ LM +K + +
Sbjct: 2 TMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQD----LMC---YTKCVSLM 54
Query: 69 AHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVR 107
A + KG+ A + LA+L + PE+ +S+E R
Sbjct: 55 AGSVNKKGEFNAPKALAQLPHLVPPEMMEMSRKSVEACR 93
>pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine.
pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine
Length = 165
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 23 YEANKDKVESDNTRELLARILNALASQQELR 53
Y+AN + TR L A IL+AL +QQ++R
Sbjct: 99 YQANDYLLFGPETRGLPAYILDALPAQQKIR 129
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 24 EANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQG 83
E N VE + L +L + S GL V+QG S HL H + ++ +
Sbjct: 75 EVNITGVEENTLIASLCDLLERIWSH----GLQVKQGKSALWSHLLHYQENRQRKLTSGS 130
Query: 84 LARLGITLNPE 94
L+ GI L+ E
Sbjct: 131 LSTSGILLDSE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,004,411
Number of Sequences: 62578
Number of extensions: 136026
Number of successful extensions: 378
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 14
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)